Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020406.t1 | XP_003602950.1 | 95.3 | 362 | 17 | 0 | 1 | 362 | 1 | 362 | 1.40E-178 | 635.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020406.t1 | P42752 | 45.2 | 314 | 161 | 5 | 22 | 328 | 21 | 330 | 2.8e-66 | 253.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020406.t1 | G7J576 | 95.3 | 362 | 17 | 0 | 1 | 362 | 1 | 362 | 1.0e-178 | 635.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31553 | MS.gene020406 | PPI |
| MS.gene020406 | MS.gene043340 | PPI |
| MS.gene92988 | MS.gene020406 | PPI |
| MS.gene020406 | MS.gene71698 | PPI |
| MS.gene029573 | MS.gene020406 | PPI |
| MS.gene029005 | MS.gene020406 | PPI |
| MS.gene020406 | MS.gene065674 | PPI |
| MS.gene35752 | MS.gene020406 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020406.t1 | MTR_3g100710 | 96.133 | 362 | 14 | 0 | 1 | 362 | 1 | 362 | 0.0 | 652 |
| MS.gene020406.t1 | MTR_3g100710 | 88.398 | 362 | 13 | 1 | 1 | 362 | 1 | 333 | 0.0 | 574 |
| MS.gene020406.t1 | MTR_4g080990 | 75.824 | 364 | 64 | 5 | 1 | 362 | 1 | 342 | 0.0 | 529 |
| MS.gene020406.t1 | MTR_5g032550 | 51.667 | 360 | 146 | 11 | 1 | 354 | 1 | 338 | 1.82e-105 | 313 |
| MS.gene020406.t1 | MTR_5g065830 | 48.023 | 354 | 168 | 8 | 3 | 352 | 4 | 345 | 2.23e-102 | 306 |
| MS.gene020406.t1 | MTR_5g032550 | 54.651 | 258 | 101 | 5 | 1 | 253 | 1 | 247 | 1.16e-83 | 255 |
| MS.gene020406.t1 | MTR_8g068950 | 40.850 | 306 | 157 | 6 | 65 | 352 | 62 | 361 | 1.38e-63 | 207 |
| MS.gene020406.t1 | MTR_8g063120 | 42.241 | 232 | 131 | 2 | 62 | 291 | 59 | 289 | 2.13e-53 | 180 |
| MS.gene020406.t1 | MTR_8g063120 | 47.027 | 185 | 97 | 1 | 62 | 246 | 59 | 242 | 1.06e-52 | 176 |
| MS.gene020406.t1 | MTR_1g107535 | 36.364 | 297 | 174 | 7 | 62 | 352 | 72 | 359 | 8.80e-51 | 174 |
| MS.gene020406.t1 | MTR_5g035360 | 37.024 | 289 | 156 | 4 | 9 | 295 | 12 | 276 | 3.30e-50 | 171 |
| MS.gene020406.t1 | MTR_4g094942 | 37.828 | 267 | 156 | 5 | 90 | 352 | 76 | 336 | 1.78e-49 | 170 |
| MS.gene020406.t1 | MTR_3g102310 | 37.165 | 261 | 156 | 5 | 96 | 353 | 84 | 339 | 6.30e-46 | 160 |
| MS.gene020406.t1 | MTR_5g015670 | 39.196 | 199 | 113 | 3 | 95 | 290 | 101 | 294 | 5.31e-37 | 137 |
| MS.gene020406.t1 | MTR_2g089490 | 32.056 | 287 | 176 | 7 | 74 | 353 | 28 | 302 | 2.41e-35 | 131 |
| MS.gene020406.t1 | MTR_2g011500 | 35.268 | 224 | 131 | 5 | 99 | 319 | 86 | 298 | 2.47e-35 | 131 |
| MS.gene020406.t1 | MTR_2g089490 | 31.597 | 288 | 173 | 8 | 74 | 353 | 28 | 299 | 2.38e-33 | 125 |
| MS.gene020406.t1 | MTR_3g103080 | 34.440 | 241 | 128 | 6 | 8 | 246 | 1 | 213 | 2.31e-31 | 121 |
| MS.gene020406.t1 | MTR_4g095790 | 29.915 | 234 | 144 | 7 | 97 | 319 | 68 | 292 | 3.56e-15 | 75.9 |
| MS.gene020406.t1 | MTR_3g060770 | 31.765 | 170 | 102 | 5 | 92 | 255 | 56 | 217 | 3.63e-15 | 75.5 |
| MS.gene020406.t1 | MTR_3g107970 | 29.121 | 182 | 116 | 4 | 74 | 251 | 225 | 397 | 5.70e-15 | 76.3 |
| MS.gene020406.t1 | MTR_1g011470 | 28.492 | 179 | 123 | 3 | 73 | 251 | 172 | 345 | 1.50e-14 | 74.7 |
| MS.gene020406.t1 | MTR_3g060820 | 30.000 | 170 | 105 | 5 | 92 | 255 | 46 | 207 | 3.29e-13 | 69.7 |
| MS.gene020406.t1 | MTR_3g061680 | 30.286 | 175 | 107 | 6 | 92 | 258 | 46 | 213 | 3.59e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020406.t1 | AT5G65420 | 50.545 | 275 | 118 | 6 | 62 | 332 | 42 | 302 | 2.70e-82 | 253 |
| MS.gene020406.t1 | AT5G65420 | 49.123 | 285 | 117 | 7 | 62 | 332 | 42 | 312 | 3.83e-81 | 250 |
| MS.gene020406.t1 | AT2G22490 | 45.338 | 311 | 159 | 5 | 26 | 329 | 25 | 331 | 3.83e-81 | 252 |
| MS.gene020406.t1 | AT2G22490 | 45.016 | 311 | 161 | 4 | 26 | 329 | 25 | 332 | 1.11e-80 | 251 |
| MS.gene020406.t1 | AT5G10440 | 54.545 | 231 | 102 | 1 | 59 | 289 | 31 | 258 | 2.33e-78 | 243 |
| MS.gene020406.t1 | AT5G65420 | 54.795 | 219 | 97 | 2 | 62 | 278 | 42 | 260 | 1.71e-76 | 237 |
| MS.gene020406.t1 | AT5G10440 | 56.983 | 179 | 77 | 0 | 59 | 237 | 31 | 209 | 1.87e-66 | 209 |
| MS.gene020406.t1 | AT5G65420 | 55.932 | 177 | 77 | 1 | 62 | 237 | 42 | 218 | 4.32e-62 | 199 |
| MS.gene020406.t1 | AT1G70210 | 44.444 | 243 | 127 | 3 | 57 | 295 | 45 | 283 | 5.74e-62 | 202 |
| MS.gene020406.t1 | AT3G50070 | 41.518 | 224 | 120 | 4 | 97 | 317 | 86 | 301 | 3.57e-46 | 161 |
| MS.gene020406.t1 | AT4G34160 | 39.604 | 202 | 119 | 2 | 97 | 296 | 87 | 287 | 4.10e-45 | 159 |
| MS.gene020406.t1 | AT5G67260 | 39.207 | 227 | 124 | 5 | 97 | 319 | 96 | 312 | 3.60e-43 | 154 |
| MS.gene020406.t1 | AT5G67260 | 38.767 | 227 | 125 | 5 | 97 | 319 | 96 | 312 | 8.38e-43 | 154 |
| MS.gene020406.t1 | AT4G37630 | 43.421 | 152 | 84 | 2 | 101 | 251 | 76 | 226 | 4.03e-32 | 121 |
| MS.gene020406.t1 | AT4G03270 | 31.338 | 284 | 168 | 11 | 74 | 352 | 35 | 296 | 2.93e-31 | 120 |
| MS.gene020406.t1 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 7.21e-31 | 118 |
| MS.gene020406.t1 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 2.57e-30 | 118 |
| MS.gene020406.t1 | AT4G03270 | 31.338 | 284 | 167 | 12 | 74 | 352 | 35 | 295 | 2.44e-29 | 115 |
| MS.gene020406.t1 | AT5G02110 | 26.383 | 235 | 159 | 6 | 64 | 294 | 45 | 269 | 3.58e-18 | 85.1 |
| MS.gene020406.t1 | AT1G20610 | 31.429 | 210 | 127 | 8 | 82 | 288 | 197 | 392 | 9.02e-16 | 78.6 |
| MS.gene020406.t1 | AT1G77390 | 29.609 | 179 | 119 | 4 | 74 | 251 | 190 | 362 | 1.03e-14 | 75.5 |
| MS.gene020406.t1 | AT5G02110 | 30.612 | 147 | 96 | 3 | 140 | 286 | 92 | 232 | 1.07e-14 | 74.3 |
| MS.gene020406.t1 | AT4G37490 | 29.143 | 175 | 114 | 4 | 77 | 251 | 179 | 343 | 1.50e-14 | 75.1 |
| MS.gene020406.t1 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 1.57e-14 | 74.7 |
| MS.gene020406.t1 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 2.26e-14 | 74.3 |
| MS.gene020406.t1 | AT1G76310 | 26.728 | 217 | 149 | 4 | 72 | 288 | 187 | 393 | 1.91e-13 | 71.6 |
| MS.gene020406.t1 | AT1G76310 | 28.889 | 180 | 118 | 4 | 72 | 251 | 187 | 356 | 5.17e-13 | 70.1 |
Find 0 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGTTGATTAATTTTGA+TGG | + | 51443:130842-130861 | MS.gene020406:intron | 15.0% |
| !!! | TTTTATGAAATCTTTTTGAT+GGG | + | 51443:129779-129798 | MS.gene020406:intron | 15.0% |
| !!! | TTTTTATGAAATCTTTTTGA+TGG | + | 51443:129778-129797 | MS.gene020406:intron | 15.0% |
| !! | AATACATAGAAAAGGTAAAA+TGG | + | 51443:130992-131011 | MS.gene020406:intron | 20.0% |
| !! | TATTAACAATGTGTTAATTG+TGG | + | 51443:131297-131316 | MS.gene020406:intron | 20.0% |
| !! | TTATCTATCCATTAATTACT+TGG | + | 51443:130186-130205 | MS.gene020406:CDS | 20.0% |
| !!! | TTAATTTTTCATCAAAACAG+TGG | + | 51443:129827-129846 | MS.gene020406:intron | 20.0% |
| ! | AGTGAAAACAATCATGAATT+AGG | + | 51443:130815-130834 | MS.gene020406:intron | 25.0% |
| ! | ATTATTGAAGTGTGTTGAAA+AGG | + | 51443:131334-131353 | MS.gene020406:CDS | 25.0% |
| ! | ATTGTGATATGTATCCATAA+GGG | - | 51443:129896-129915 | None:intergenic | 25.0% |
| ! | ATTTAATGAACTATCCCTTA+TGG | + | 51443:129879-129898 | MS.gene020406:intron | 25.0% |
| ! | CATCATCATTAATCTTAGAA+AGG | - | 51443:130658-130677 | None:intergenic | 25.0% |
| ! | CTCATATAACAACTTAAACA+AGG | + | 51443:131174-131193 | MS.gene020406:intron | 25.0% |
| ! | GAAGTTCAACACAAAAAAAT+AGG | + | 51443:130257-130276 | MS.gene020406:intron | 25.0% |
| ! | TCGTTATTCATTAACTTACA+GGG | - | 51443:130237-130256 | None:intergenic | 25.0% |
| ! | TCTGATTCAATACATAGAAA+AGG | + | 51443:130984-131003 | MS.gene020406:CDS | 25.0% |
| ! | TTATGTTTCCAATTTCAGAA+GGG | + | 51443:130311-130330 | MS.gene020406:intron | 25.0% |
| !! | TACATTGTTTTCTTGTCATT+TGG | - | 51443:131027-131046 | None:intergenic | 25.0% |
| !! | TGCAATTTTCTGTGATTTAT+AGG | + | 51443:130129-130148 | MS.gene020406:intron | 25.0% |
| !!! | TAGATTGGATTGATTTGTAT+TGG | + | 51443:130039-130058 | MS.gene020406:intron | 25.0% |
| AAACATTCAATGAAGGAGAA+TGG | - | 51443:130635-130654 | None:intergenic | 30.0% | |
| AAACATTTAGGTACCTTTGA+TGG | - | 51443:130735-130754 | None:intergenic | 30.0% | |
| AACTTGTCAATTTCAATGCT+TGG | + | 51443:130446-130465 | MS.gene020406:intron | 30.0% | |
| ACATAGAAAAGGTAAAATGG+TGG | + | 51443:130995-131014 | MS.gene020406:intron | 30.0% | |
| AGAAAGGAAACATTCAATGA+AGG | - | 51443:130642-130661 | None:intergenic | 30.0% | |
| ATGATGATAAGAGTTCATCA+AGG | + | 51443:130672-130691 | MS.gene020406:CDS | 30.0% | |
| CTAGAAACACAATCAAAACT+TGG | - | 51443:129409-129428 | None:intergenic | 30.0% | |
| CTCGTTATTCATTAACTTAC+AGG | - | 51443:130238-130257 | None:intergenic | 30.0% | |
| GAATCGATCCAAGTAATTAA+TGG | - | 51443:130197-130216 | None:intergenic | 30.0% | |
| GATTGTGATATGTATCCATA+AGG | - | 51443:129897-129916 | None:intergenic | 30.0% | |
| GTGTTAATTGTGGTTATTAC+AGG | + | 51443:131307-131326 | MS.gene020406:intron | 30.0% | |
| GTTATGTTTCCAATTTCAGA+AGG | + | 51443:130310-130329 | MS.gene020406:intron | 30.0% | |
| TAGCACATTTGATTGATGAA+TGG | + | 51443:130003-130022 | MS.gene020406:intron | 30.0% | |
| TATTTGAATAGGTTGCAGTT+TGG | + | 51443:129646-129665 | MS.gene020406:CDS | 30.0% | |
| TCATCAATTCATCAGATACA+AGG | - | 51443:129964-129983 | None:intergenic | 30.0% | |
| TTAGTTCATACATACTCTCA+AGG | + | 51443:131065-131084 | MS.gene020406:intron | 30.0% | |
| ! | ATAGGCTTTATATTCTGCAT+TGG | + | 51443:130275-130294 | MS.gene020406:intron | 30.0% |
| ! | ATCCATTGCTTGATAACTAT+TGG | + | 51443:129933-129952 | MS.gene020406:intron | 30.0% |
| ! | ATTTTTCATCAAAACAGTGG+CGG | + | 51443:129830-129849 | MS.gene020406:intron | 30.0% |
| ! | TGATGAATTGATGACTTGAA+TGG | + | 51443:129970-129989 | MS.gene020406:intron | 30.0% |
| ! | TGATTTGTATTGGATTGGAT+TGG | + | 51443:130049-130068 | MS.gene020406:intron | 30.0% |
| ! | TTTAGCTTCAAACACAAACT+TGG | - | 51443:130549-130568 | None:intergenic | 30.0% |
| !! | ATTGATGAATGGATTGAGAT+TGG | + | 51443:130014-130033 | MS.gene020406:intron | 30.0% |
| !! | TGGATTGATTTGTATTGGAT+TGG | + | 51443:130044-130063 | MS.gene020406:intron | 30.0% |
| !! | TGTTTTCTTGTCATTTGGAA+AGG | - | 51443:131022-131041 | None:intergenic | 30.0% |
| !!! | GTTTTTGATGATGCTGAATA+TGG | + | 51443:129457-129476 | MS.gene020406:CDS | 30.0% |
| AGCTAAAACCATTCAGAGAA+TGG | + | 51443:130562-130581 | MS.gene020406:CDS | 35.0% | |
| ATGACTCAACAACGTTATGA+TGG | + | 51443:129538-129557 | MS.gene020406:CDS | 35.0% | |
| ATGGATAGATAAGCACAAAG+AGG | - | 51443:130178-130197 | None:intergenic | 35.0% | |
| CAGGGAATTCATATACAGAA+AGG | - | 51443:130219-130238 | None:intergenic | 35.0% | |
| CTAGAAATGAAGTCATCGAT+TGG | + | 51443:129686-129705 | MS.gene020406:CDS | 35.0% | |
| CTATTCAAATAATCAGCACC+AGG | - | 51443:129637-129656 | None:intergenic | 35.0% | |
| CTTATATCAAGCACCATCAA+AGG | + | 51443:130719-130738 | MS.gene020406:CDS | 35.0% | |
| GTCCAATAGTTATCAAGCAA+TGG | - | 51443:129938-129957 | None:intergenic | 35.0% | |
| TAAAAGCTCCATTCTCTGAA+TGG | - | 51443:130573-130592 | None:intergenic | 35.0% | |
| TATCTTCCTCAGTACAAAGA+AGG | - | 51443:129432-129451 | None:intergenic | 35.0% | |
| TCACTTGAGCAATGAAGTTA+GGG | - | 51443:130762-130781 | None:intergenic | 35.0% | |
| TTATAGGTTCGAGCACATTT+CGG | + | 51443:130145-130164 | MS.gene020406:intron | 35.0% | |
| TTCACTTGAGCAATGAAGTT+AGG | - | 51443:130763-130782 | None:intergenic | 35.0% | |
| TTTGCTACCATCAATTGCTT+GGG | - | 51443:130953-130972 | None:intergenic | 35.0% | |
| ! | AGTCATCGATTGGATTCAAA+AGG | + | 51443:129696-129715 | MS.gene020406:CDS | 35.0% |
| ! | ATGATTGTTTTCACTGCAAG+GGG | - | 51443:130810-130829 | None:intergenic | 35.0% |
| ! | ATTTGCTACCATCAATTGCT+TGG | - | 51443:130954-130973 | None:intergenic | 35.0% |
| ! | CATGATTGTTTTCACTGCAA+GGG | - | 51443:130811-130830 | None:intergenic | 35.0% |
| ! | GGATTGAGATTGGATTAGAT+TGG | + | 51443:130024-130043 | MS.gene020406:intron | 35.0% |
| ! | GTTTGGAGATTTGGATTTTC+AGG | + | 51443:129663-129682 | MS.gene020406:CDS | 35.0% |
| ! | TCATGATTGTTTTCACTGCA+AGG | - | 51443:130812-130831 | None:intergenic | 35.0% |
| ! | TGTATTGGATTGGATTGGAT+TGG | + | 51443:130054-130073 | MS.gene020406:intron | 35.0% |
| !! | CTGGTGCTGATTATTTGAAT+AGG | + | 51443:129635-129654 | MS.gene020406:CDS | 35.0% |
| !! | TTTGATGATGCTGAATATGG+TGG | + | 51443:129460-129479 | MS.gene020406:CDS | 35.0% |
| !!! | CGTTTTAATTGGGTTTGGAT+TGG | + | 51443:129856-129875 | MS.gene020406:intron | 35.0% |
| AAAAGTGATGACACCAATGC+TGG | + | 51443:131470-131489 | MS.gene020406:CDS | 40.0% | |
| AAACACTCTTCACTCTGCAA+TGG | - | 51443:129580-129599 | None:intergenic | 40.0% | |
| AATCCTACCTGCAAATCAAG+AGG | - | 51443:130416-130435 | None:intergenic | 40.0% | |
| AATGTATCCAACACACCCAT+TGG | - | 51443:131437-131456 | None:intergenic | 40.0% | |
| AATTTCAGAAGGGAAGAGCT+TGG | + | 51443:130321-130340 | MS.gene020406:intron | 40.0% | |
| AGCTTGGACAATGCAATTGT+TGG | + | 51443:130337-130356 | MS.gene020406:CDS | 40.0% | |
| AGGAAGCTAAACAAAACCTG+TGG | + | 51443:131545-131564 | MS.gene020406:CDS | 40.0% | |
| AGTTAGGGAGGGAAACATTT+AGG | - | 51443:130747-130766 | None:intergenic | 40.0% | |
| ATCTTTGGCAGCTAAAGTAG+AGG | + | 51443:130373-130392 | MS.gene020406:CDS | 40.0% | |
| ATGTATCCAACACACCCATT+GGG | - | 51443:131436-131455 | None:intergenic | 40.0% | |
| CACTGTTCAATGACATCTCT+TGG | - | 51443:131361-131380 | None:intergenic | 40.0% | |
| GTCATCTGATGATCATTCCT+AGG | - | 51443:129523-129542 | None:intergenic | 40.0% | |
| TAGGTTGCAGTTTGGAGATT+TGG | + | 51443:129654-129673 | MS.gene020406:CDS | 40.0% | |
| TAGTACTCAGCACATTGAAG+TGG | + | 51443:130591-130610 | MS.gene020406:CDS | 40.0% | |
| TCATTGAACAGTGTGTTCAC+TGG | + | 51443:131368-131387 | MS.gene020406:CDS | 40.0% | |
| TTGAGCAATGAAGTTAGGGA+GGG | - | 51443:130758-130777 | None:intergenic | 40.0% | |
| ! | TGATGGTGTGAATTCAATGC+AGG | + | 51443:130859-130878 | MS.gene020406:intron | 40.0% |
| ! | TTCTAGCCTTCTTTGTACTG+AGG | + | 51443:129423-129442 | MS.gene020406:CDS | 40.0% |
| !! | AAGCTCTTCCCTTCTGAAAT+TGG | - | 51443:130322-130341 | None:intergenic | 40.0% |
| !! | AGAGTGTTTGGTTCTGATGT+TGG | + | 51443:129591-129610 | MS.gene020406:CDS | 40.0% |
| !! | ATTGCAGAGTGAAGAGTGTT+TGG | + | 51443:129579-129598 | MS.gene020406:CDS | 40.0% |
| !! | CTTGATTTGCAGGTAGGATT+AGG | + | 51443:130416-130435 | MS.gene020406:intron | 40.0% |
| !! | GTCGATTTTTGTGTGCAGAT+TGG | + | 51443:130518-130537 | MS.gene020406:intron | 40.0% |
| !! | TGGAAAAAGAGTGTCAGCAA+TGG | + | 51443:129611-129630 | MS.gene020406:CDS | 40.0% |
| CAATGCAGGTCTTGACTTCT+TGG | + | 51443:130873-130892 | MS.gene020406:intron | 45.0% | |
| CTTGAGCAATGAAGTTAGGG+AGG | - | 51443:130759-130778 | None:intergenic | 45.0% | |
| GATGATGCTGAATATGGTGG+TGG | + | 51443:129463-129482 | MS.gene020406:CDS | 45.0% | |
| GTAGTAGCCCAGATGCTAAA+AGG | + | 51443:131522-131541 | MS.gene020406:CDS | 45.0% | |
| TGCAGGTAGGATTAGGAACT+AGG | + | 51443:130423-130442 | MS.gene020406:intron | 45.0% | |
| TTTCATCAAAACAGTGGCGG+CGG | + | 51443:129833-129852 | MS.gene020406:intron | 45.0% | |
| ! | AGCTTCCTCCTTTTAGCATC+TGG | - | 51443:131533-131552 | None:intergenic | 45.0% |
| ! | CTACAAAAGCTCTGATCCAC+AGG | - | 51443:131564-131583 | None:intergenic | 45.0% |
| ! | CTGTGGCAACATGTGTTGTT+GGG | + | 51443:130923-130942 | MS.gene020406:CDS | 45.0% |
| ! | GCTTCCTCCTTTTAGCATCT+GGG | - | 51443:131532-131551 | None:intergenic | 45.0% |
| ! | GTTCGAGCACATTTCGGTTT+TGG | + | 51443:130151-130170 | MS.gene020406:CDS | 45.0% |
| ! | TGTGGCAACATGTGTTGTTG+GGG | + | 51443:130924-130943 | MS.gene020406:CDS | 45.0% |
| ! | TTGTTTTCACTGCAAGGGGT+TGG | - | 51443:130806-130825 | None:intergenic | 45.0% |
| !! | GGCTGTAGCTTGCTTATCTT+TGG | + | 51443:130358-130377 | MS.gene020406:CDS | 45.0% |
| !! | TGAATATGGTGGTGGTGGTT+CGG | + | 51443:129471-129490 | MS.gene020406:CDS | 45.0% |
| AACACACCCATTGGGCTTTG+AGG | - | 51443:131428-131447 | None:intergenic | 50.0% | |
| ACAGCTGCTGCAATCTCTGA+TGG | - | 51443:130907-130926 | None:intergenic | 50.0% | |
| ACCTGCAAATCAAGAGGCTG+AGG | - | 51443:130410-130429 | None:intergenic | 50.0% | |
| AGTGATGACACCAATGCTGG+TGG | + | 51443:131473-131492 | MS.gene020406:CDS | 50.0% | |
| AGTGTGCCTCAAAGCCCAAT+GGG | + | 51443:131419-131438 | MS.gene020406:CDS | 50.0% | |
| ATCAGAGATTGCAGCAGCTG+TGG | + | 51443:130906-130925 | MS.gene020406:CDS | 50.0% | |
| CTCTGCAATGGCAACTCATC+AGG | - | 51443:129568-129587 | None:intergenic | 50.0% | |
| GAACAGTGTGTTCACTGGCA+AGG | + | 51443:131373-131392 | MS.gene020406:CDS | 50.0% | |
| GCTGTGGCAACATGTGTTGT+TGG | + | 51443:130922-130941 | MS.gene020406:CDS | 50.0% | |
| GGGGAAACCCAAGCAATTGA+TGG | + | 51443:130943-130962 | MS.gene020406:CDS | 50.0% | |
| GTAGCCCAGATGCTAAAAGG+AGG | + | 51443:131525-131544 | MS.gene020406:CDS | 50.0% | |
| TAGTGTGCCTCAAAGCCCAA+TGG | + | 51443:131418-131437 | MS.gene020406:CDS | 50.0% | |
| TCAAAGCCCAATGGGTGTGT+TGG | + | 51443:131427-131446 | MS.gene020406:CDS | 50.0% | |
| !! | AAAGAGTGTCAGCAATGGCC+TGG | + | 51443:129616-129635 | MS.gene020406:CDS | 50.0% |
| !! | ATTGGGCTTTGAGGCACACT+AGG | - | 51443:131419-131438 | None:intergenic | 50.0% |
| !! | CAGCCTCTTGATTTGCAGGT+AGG | + | 51443:130410-130429 | MS.gene020406:intron | 50.0% |
| !! | GATGCTGAATATGGTGGTGG+TGG | + | 51443:129466-129485 | MS.gene020406:CDS | 50.0% |
| !! | TCCTCAGCCTCTTGATTTGC+AGG | + | 51443:130406-130425 | MS.gene020406:CDS | 50.0% |
| !! | TTGGGCTTTGAGGCACACTA+GGG | - | 51443:131418-131437 | None:intergenic | 50.0% |
| !!! | GGCGGCGTTTTAATTGGGTT+TGG | + | 51443:129851-129870 | MS.gene020406:intron | 50.0% |
| GATGACACCAATGCTGGTGG+TGG | + | 51443:131476-131495 | MS.gene020406:CDS | 55.0% | |
| TGAACCACCACCACCAGCAT+TGG | - | 51443:131486-131505 | None:intergenic | 55.0% | |
| !! | AGTGGCGGCGGCGTTTTAAT+TGG | + | 51443:129845-129864 | MS.gene020406:intron | 55.0% |
| !! | ATATGGTGGTGGTGGTTCGG+TGG | + | 51443:129474-129493 | MS.gene020406:CDS | 55.0% |
| !!! | GTGGCGGCGGCGTTTTAATT+GGG | + | 51443:129846-129865 | MS.gene020406:intron | 55.0% |
| ! | TGGAGGTGTACGAGGACTCG+TGG | + | 51443:129494-129513 | MS.gene020406:CDS | 60.0% |
| !! | GACACCAATGCTGGTGGTGG+TGG | + | 51443:131479-131498 | MS.gene020406:CDS | 60.0% |
| !! | TGGTTCGGTGGAGGTGTACG+AGG | + | 51443:129486-129505 | MS.gene020406:CDS | 60.0% |
| ACGAGGACTCGTGGCGTCCT+AGG | + | 51443:129503-129522 | MS.gene020406:CDS | 65.0% | |
| !! | TGGTGGTGGTGGTTCGGTGG+AGG | + | 51443:129477-129496 | MS.gene020406:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51443 | gene | 129400 | 131583 | 129400 | ID=MS.gene020406 |
| 51443 | mRNA | 129400 | 131583 | 129400 | ID=MS.gene020406.t1;Parent=MS.gene020406 |
| 51443 | exon | 129400 | 129717 | 129400 | ID=MS.gene020406.t1.exon1;Parent=MS.gene020406.t1 |
| 51443 | CDS | 129400 | 129717 | 129400 | ID=cds.MS.gene020406.t1;Parent=MS.gene020406.t1 |
| 51443 | exon | 130151 | 130237 | 130151 | ID=MS.gene020406.t1.exon2;Parent=MS.gene020406.t1 |
| 51443 | CDS | 130151 | 130237 | 130151 | ID=cds.MS.gene020406.t1;Parent=MS.gene020406.t1 |
| 51443 | exon | 130329 | 130427 | 130329 | ID=MS.gene020406.t1.exon3;Parent=MS.gene020406.t1 |
| 51443 | CDS | 130329 | 130427 | 130329 | ID=cds.MS.gene020406.t1;Parent=MS.gene020406.t1 |
| 51443 | exon | 130536 | 130740 | 130536 | ID=MS.gene020406.t1.exon4;Parent=MS.gene020406.t1 |
| 51443 | CDS | 130536 | 130740 | 130536 | ID=cds.MS.gene020406.t1;Parent=MS.gene020406.t1 |
| 51443 | exon | 130881 | 131005 | 130881 | ID=MS.gene020406.t1.exon5;Parent=MS.gene020406.t1 |
| 51443 | CDS | 130881 | 131005 | 130881 | ID=cds.MS.gene020406.t1;Parent=MS.gene020406.t1 |
| 51443 | exon | 131329 | 131583 | 131329 | ID=MS.gene020406.t1.exon6;Parent=MS.gene020406.t1 |
| 51443 | CDS | 131329 | 131583 | 131329 | ID=cds.MS.gene020406.t1;Parent=MS.gene020406.t1 |
| Gene Sequence |
| Protein sequence |
