Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020442.t1 | XP_024634972.1 | 92.3 | 443 | 34 | 0 | 1 | 443 | 1 | 443 | 2.70E-235 | 824.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020442.t1 | Q39048 | 40.6 | 434 | 222 | 14 | 7 | 425 | 1 | 413 | 2.8e-76 | 287.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020442.t1 | A0A396J1C8 | 92.3 | 443 | 34 | 0 | 1 | 443 | 1 | 443 | 1.9e-235 | 824.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023496 | MS.gene020442 | PPI |
| MS.gene08811 | MS.gene020442 | PPI |
| MS.gene08966 | MS.gene020442 | PPI |
| MS.gene09279 | MS.gene020442 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020442.t1 | MTR_3g100150 | 93.333 | 435 | 29 | 0 | 1 | 435 | 1 | 435 | 0.0 | 844 |
| MS.gene020442.t1 | MTR_1g035890 | 78.539 | 438 | 89 | 2 | 1 | 436 | 1 | 435 | 0.0 | 715 |
| MS.gene020442.t1 | MTR_2g036780 | 76.749 | 443 | 97 | 3 | 1 | 440 | 1 | 440 | 0.0 | 699 |
| MS.gene020442.t1 | MTR_8g081600 | 32.463 | 268 | 171 | 5 | 163 | 428 | 1 | 260 | 5.44e-41 | 147 |
| MS.gene020442.t1 | MTR_8g081480 | 48.092 | 131 | 66 | 2 | 15 | 144 | 16 | 145 | 3.09e-32 | 120 |
| MS.gene020442.t1 | MTR_7g114960 | 25.280 | 447 | 270 | 18 | 18 | 424 | 15 | 437 | 2.48e-22 | 99.4 |
| MS.gene020442.t1 | MTR_1g011660 | 24.528 | 424 | 268 | 14 | 34 | 424 | 27 | 431 | 1.27e-20 | 94.4 |
| MS.gene020442.t1 | MTR_8g096530 | 26.639 | 244 | 154 | 6 | 46 | 275 | 39 | 271 | 1.66e-16 | 81.6 |
| MS.gene020442.t1 | MTR_8g079970 | 23.162 | 272 | 182 | 10 | 18 | 278 | 10 | 265 | 6.64e-15 | 76.6 |
| MS.gene020442.t1 | MTR_3g026950 | 26.335 | 281 | 175 | 9 | 18 | 277 | 9 | 278 | 7.28e-14 | 73.6 |
| MS.gene020442.t1 | MTR_4g007540 | 24.818 | 274 | 185 | 11 | 15 | 277 | 6 | 269 | 1.31e-13 | 72.8 |
| MS.gene020442.t1 | MTR_2g064495 | 23.022 | 278 | 182 | 9 | 17 | 278 | 8 | 269 | 1.36e-13 | 72.8 |
| MS.gene020442.t1 | MTR_4g127650 | 23.684 | 418 | 241 | 18 | 61 | 431 | 69 | 455 | 3.19e-13 | 71.6 |
| MS.gene020442.t1 | MTR_2g105330 | 24.265 | 272 | 183 | 10 | 18 | 278 | 10 | 269 | 4.32e-13 | 71.2 |
| MS.gene020442.t1 | MTR_7g086000 | 25.868 | 317 | 192 | 13 | 15 | 303 | 8 | 309 | 5.67e-13 | 70.9 |
| MS.gene020442.t1 | MTR_8g079950 | 28.049 | 164 | 110 | 4 | 18 | 177 | 10 | 169 | 5.88e-13 | 70.9 |
| MS.gene020442.t1 | MTR_5g084850 | 25.610 | 164 | 114 | 4 | 18 | 177 | 10 | 169 | 1.12e-12 | 70.1 |
| MS.gene020442.t1 | MTR_7g084940 | 22.164 | 379 | 243 | 17 | 5 | 352 | 10 | 367 | 2.81e-12 | 68.6 |
| MS.gene020442.t1 | MTR_8g075610 | 24.481 | 241 | 158 | 10 | 48 | 275 | 29 | 258 | 1.02e-11 | 67.0 |
| MS.gene020442.t1 | MTR_4g097090 | 23.245 | 413 | 250 | 19 | 61 | 431 | 68 | 455 | 1.27e-11 | 66.6 |
| MS.gene020442.t1 | MTR_3g098980 | 24.583 | 240 | 155 | 9 | 46 | 271 | 46 | 273 | 3.55e-11 | 65.1 |
| MS.gene020442.t1 | MTR_5g090830 | 26.271 | 236 | 150 | 9 | 54 | 275 | 55 | 280 | 6.73e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020442.t1 | AT4G24510 | 40.553 | 434 | 222 | 14 | 7 | 425 | 1 | 413 | 1.11e-98 | 302 |
| MS.gene020442.t1 | AT4G13840 | 35.897 | 429 | 252 | 10 | 8 | 430 | 11 | 422 | 6.33e-92 | 285 |
| MS.gene020442.t1 | AT3G23840 | 36.111 | 432 | 243 | 11 | 10 | 437 | 11 | 413 | 2.80e-90 | 280 |
| MS.gene020442.t1 | AT2G19070 | 24.522 | 314 | 200 | 11 | 11 | 301 | 3 | 302 | 6.21e-14 | 73.9 |
| MS.gene020442.t1 | AT5G48930 | 22.769 | 325 | 195 | 10 | 15 | 317 | 6 | 296 | 1.08e-13 | 73.2 |
| MS.gene020442.t1 | AT3G48720 | 25.574 | 305 | 194 | 12 | 29 | 313 | 25 | 316 | 1.12e-13 | 73.2 |
| MS.gene020442.t1 | AT5G41040 | 28.902 | 173 | 108 | 5 | 46 | 212 | 65 | 228 | 1.16e-12 | 70.1 |
| MS.gene020442.t1 | AT5G41040 | 28.902 | 173 | 108 | 5 | 46 | 212 | 49 | 212 | 1.21e-12 | 69.7 |
| MS.gene020442.t1 | AT1G27620 | 22.943 | 401 | 267 | 15 | 46 | 425 | 43 | 422 | 2.03e-12 | 69.3 |
| MS.gene020442.t1 | AT5G63560 | 25.000 | 248 | 155 | 11 | 46 | 278 | 41 | 272 | 8.71e-12 | 67.0 |
| MS.gene020442.t1 | AT1G32910 | 23.192 | 401 | 249 | 14 | 60 | 421 | 59 | 439 | 1.25e-11 | 66.6 |
| MS.gene020442.t1 | AT4G31910 | 24.000 | 200 | 139 | 5 | 48 | 241 | 45 | 237 | 6.10e-11 | 64.7 |
Find 87 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATCCCATTTCCATTAAA+AGG | 0.125824 | 3.3:+82591251 | MS.gene020442:CDS |
| AATGGGTTCACTACCTAATT+TGG | 0.146863 | 3.3:+82589408 | None:intergenic |
| CTTTGTCTTGGTATTGATAT+TGG | 0.233450 | 3.3:-82591392 | None:intergenic |
| CGGTTGAAATTCTTGAAGTT+TGG | 0.237541 | 3.3:-82589441 | None:intergenic |
| TAAAGGGCAGAAACCGATTT+TGG | 0.239229 | 3.3:+82591756 | MS.gene020442:CDS |
| TTATTACCATTGTCATCTTC+TGG | 0.251400 | 3.3:-82591835 | None:intergenic |
| GATTCATACTCACATGTTTC+AGG | 0.254132 | 3.3:+82589628 | MS.gene020442:CDS |
| GGACAAATAAGAGGAGATTT+TGG | 0.254623 | 3.3:+82591454 | MS.gene020442:CDS |
| TGGGGAGGAGTTTCCAAATT+AGG | 0.268890 | 3.3:-82589421 | None:intergenic |
| TTTGGCATGTGAAGAGATTT+TGG | 0.279640 | 3.3:-82591190 | None:intergenic |
| GGTTGAAATTCTTGAAGTTT+GGG | 0.305408 | 3.3:-82589440 | None:intergenic |
| TTAGCAAATCCATGTAGTTT+AGG | 0.306387 | 3.3:-82589507 | None:intergenic |
| AAATTATTTCAGCTATGATT+TGG | 0.308886 | 3.3:+82591422 | MS.gene020442:CDS |
| GATATTGGTATTGGTTGATA+TGG | 0.311739 | 3.3:-82591377 | None:intergenic |
| AATTGAGGTTTAGTGAGATT+TGG | 0.334442 | 3.3:-82591208 | None:intergenic |
| CTTGGTATTGATATTGGTAT+TGG | 0.335050 | 3.3:-82591386 | None:intergenic |
| CGAGTCTTGGACTTTGTTAA+GGG | 0.335519 | 3.3:+82591947 | MS.gene020442:CDS |
| AAATCACAATTTGCCAAAAT+CGG | 0.338748 | 3.3:-82591769 | None:intergenic |
| TTCCAAACAACTTCATCATT+TGG | 0.339654 | 3.3:+82591345 | MS.gene020442:CDS |
| TTTAGAATTGAATAAGTATA+TGG | 0.345472 | 3.3:-82589551 | None:intergenic |
| CTGAGCTGGGCTCACATTCT+TGG | 0.349530 | 3.3:+82591103 | MS.gene020442:CDS |
| GAAGATGACAATGGTAATAA+TGG | 0.356828 | 3.3:+82591838 | MS.gene020442:CDS |
| CAACAACTGTTGAAGAATAT+TGG | 0.364639 | 3.3:+82591275 | MS.gene020442:CDS |
| TCGAGTCTTGGACTTTGTTA+AGG | 0.367163 | 3.3:+82591946 | MS.gene020442:CDS |
| AAAGTTAACATATGTAGATT+TGG | 0.368935 | 3.3:+82591705 | MS.gene020442:CDS |
| TCTTCACCACGAGGGGTTGC+TGG | 0.369933 | 3.3:-82589469 | None:intergenic |
| GACTATCCGTGGGACTGAGC+TGG | 0.378652 | 3.3:+82591089 | MS.gene020442:CDS |
| GCTATGATTTGGAAATGTAT+AGG | 0.393101 | 3.3:+82591433 | MS.gene020442:CDS |
| TTTATGGGATAAAGATTAAA+GGG | 0.393168 | 3.3:+82591740 | MS.gene020442:CDS |
| ATACAATATTGTTCGAGTCT+TGG | 0.400828 | 3.3:+82591934 | MS.gene020442:CDS |
| GGGTGATCAAGGTGTTGTTT+TGG | 0.424320 | 3.3:+82591801 | MS.gene020442:CDS |
| TACCAAATGATGAAGTTGTT+TGG | 0.426548 | 3.3:-82591347 | None:intergenic |
| ACGAGGGGTTGCTGGAACTA+CGG | 0.428143 | 3.3:-82589461 | None:intergenic |
| GTGCTAGTTTACATTTCAGT+TGG | 0.430768 | 3.3:-82591900 | None:intergenic |
| AGGGTTAGAATATCAGAATC+AGG | 0.434770 | 3.3:+82589652 | MS.gene020442:CDS |
| CCATTGTCATCTTCTGGTCC+TGG | 0.436805 | 3.3:-82591829 | None:intergenic |
| AATGTAAACTAGCACAAGAA+TGG | 0.442197 | 3.3:+82591908 | MS.gene020442:CDS |
| TAATCCCATTTCCATTAAAA+GGG | 0.449982 | 3.3:+82591252 | MS.gene020442:CDS |
| ACAGAATTTGATGAGAATTG+AGG | 0.450261 | 3.3:-82591223 | None:intergenic |
| GAAAATGAATTCCCGACAAA+TGG | 0.454250 | 3.3:+82591523 | MS.gene020442:CDS |
| CTCAACACCGAGCCATTTGT+CGG | 0.462606 | 3.3:-82591535 | None:intergenic |
| ATGGTAACAATTTCTTTACC+TGG | 0.475074 | 3.3:+82591865 | MS.gene020442:CDS |
| AGTATATGGATCGGATATAG+TGG | 0.480043 | 3.3:-82589537 | None:intergenic |
| AATTTCAAAATACTTTGTCT+TGG | 0.480369 | 3.3:-82591404 | None:intergenic |
| GCGTCGTTGCACTTGATAAA+CGG | 0.491094 | 3.3:-82589679 | None:intergenic |
| ATGTAAACTAGCACAAGAAT+GGG | 0.492269 | 3.3:+82591909 | MS.gene020442:CDS |
| TTTCGAGGTGTGGGTGATCA+AGG | 0.495403 | 3.3:+82591790 | MS.gene020442:CDS |
| CAATGGTAATAATGGAAGGA+TGG | 0.498640 | 3.3:+82591846 | MS.gene020442:CDS |
| AGTTGGTCAAGTTCTTTCCC+AGG | 0.509452 | 3.3:-82591883 | None:intergenic |
| ATCGAAACAAGTTTACCTCC+TGG | 0.511391 | 3.3:+82591562 | MS.gene020442:CDS |
| ACTATCCGTGGGACTGAGCT+GGG | 0.514770 | 3.3:+82591090 | MS.gene020442:CDS |
| CATACTCACATGTTTCAGGT+AGG | 0.517432 | 3.3:+82589632 | MS.gene020442:CDS |
| TCAACACCGAGCCATTTGTC+GGG | 0.518341 | 3.3:-82591534 | None:intergenic |
| TTTATCAAGTGCAACGACGC+GGG | 0.528936 | 3.3:+82589682 | MS.gene020442:CDS |
| TAGTTCACATTCTTCAAATG+TGG | 0.529855 | 3.3:+82591064 | MS.gene020442:intron |
| TCTGATATATTAGATTCTCC+AGG | 0.530313 | 3.3:-82591580 | None:intergenic |
| GCGAGAAAACGCTGCGTGAA+TGG | 0.530466 | 3.3:+82589728 | MS.gene020442:CDS |
| ATACTCACATGTTTCAGGTA+GGG | 0.532854 | 3.3:+82589633 | MS.gene020442:CDS |
| AATGAATGAGAATCATGCAT+TGG | 0.533438 | 3.3:+82591630 | MS.gene020442:CDS |
| GAAAACGCTGCGTGAATGGT+TGG | 0.535685 | 3.3:+82589732 | MS.gene020442:CDS |
| AGCTAGTGTGTGACTCCACT+TGG | 0.536358 | 3.3:-82591155 | None:intergenic |
| AAGTGGAGTCACACACTAGC+TGG | 0.545603 | 3.3:+82591157 | MS.gene020442:CDS |
| TGGTAACAATTTCTTTACCT+GGG | 0.546017 | 3.3:+82591866 | MS.gene020442:CDS |
| CTTGTATATGATCATGTGCT+TGG | 0.551161 | 3.3:+82589781 | MS.gene020442:CDS |
| ATGACAATGGTAATAATGGA+AGG | 0.564844 | 3.3:+82591842 | MS.gene020442:CDS |
| ATACTTATTCAATTCTAAAG+CGG | 0.570391 | 3.3:+82589555 | MS.gene020442:CDS |
| TTCACATTCTTCAAATGTGG+AGG | 0.578555 | 3.3:+82591067 | MS.gene020442:CDS |
| GAATCAAGTAGTGGAAACAT+TGG | 0.583620 | 3.3:-82589610 | None:intergenic |
| AAATGTATAGGACAAATAAG+AGG | 0.585230 | 3.3:+82591445 | MS.gene020442:CDS |
| GTTGAAATTCTTGAAGTTTG+GGG | 0.589535 | 3.3:-82589439 | None:intergenic |
| TTATCAAGTGCAACGACGCG+GGG | 0.589797 | 3.3:+82589683 | MS.gene020442:CDS |
| TGCATATAACCTAAACTACA+TGG | 0.592000 | 3.3:+82589498 | MS.gene020442:CDS |
| GTACATATCGTCACAACCCT+AGG | 0.594537 | 3.3:-82591478 | None:intergenic |
| TGAATTCCCGACAAATGGCT+CGG | 0.606392 | 3.3:+82591528 | MS.gene020442:CDS |
| GAAATTCTTGAAGTTTGGGG+AGG | 0.607791 | 3.3:-82589436 | None:intergenic |
| GTGAGCCCAGCTCAGTCCCA+CGG | 0.619598 | 3.3:-82591095 | None:intergenic |
| CAAATGTGGAGGACTATCCG+TGG | 0.627456 | 3.3:+82591078 | MS.gene020442:CDS |
| AATTGAATAAGTATATGGAT+CGG | 0.632663 | 3.3:-82589546 | None:intergenic |
| AAATGTGGAGGACTATCCGT+GGG | 0.635013 | 3.3:+82591079 | MS.gene020442:CDS |
| TGTGAGTATGAATCAAGTAG+TGG | 0.635337 | 3.3:-82589619 | None:intergenic |
| AAAATGATGGAGGAAGGTGA+AGG | 0.654901 | 3.3:+82591655 | MS.gene020442:CDS |
| AGTAGCTACATAACTATCAG+TGG | 0.657052 | 3.3:-82591305 | None:intergenic |
| GATATATTAGATTCTCCAGG+AGG | 0.665656 | 3.3:-82591577 | None:intergenic |
| GTTTATCAAGTGCAACGACG+CGG | 0.688910 | 3.3:+82589681 | MS.gene020442:CDS |
| GTAGTTCCAGCAACCCCTCG+TGG | 0.703084 | 3.3:+82589463 | MS.gene020442:CDS |
| CCAGGACCAGAAGATGACAA+TGG | 0.706189 | 3.3:+82591829 | MS.gene020442:CDS |
| TATCAAGTGCAACGACGCGG+GGG | 0.711388 | 3.3:+82589684 | MS.gene020442:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAAAATTAGTTTTTTTTA+GGG | - | chr3.3:82590187-82590206 | None:intergenic | 10.0% |
| !!! | AATGGTTATATTTTTTTTAT+TGG | - | chr3.3:82591005-82591024 | None:intergenic | 10.0% |
| !!! | ATAAATATTACTAATTTTGT+TGG | + | chr3.3:82590156-82590175 | MS.gene020442:intron | 10.0% |
| !!! | TTATATTTTTTTTATTGGAA+CGG | - | chr3.3:82591000-82591019 | None:intergenic | 10.0% |
| !!! | TTTTATGTTTCTTTTTATTA+GGG | - | chr3.3:82590372-82590391 | None:intergenic | 10.0% |
| !!! | TTTTGTTCTAATTTAAAAAA+CGG | + | chr3.3:82590343-82590362 | MS.gene020442:intron | 10.0% |
| !!! | TTTTTATGTTTCTTTTTATT+AGG | - | chr3.3:82590373-82590392 | None:intergenic | 10.0% |
| !! | TCTCGATTATAATTTAAAAA+TGG | - | chr3.3:82590302-82590321 | None:intergenic | 15.0% |
| !! | TTTGTTCTAATTTAAAAAAC+GGG | + | chr3.3:82590344-82590363 | MS.gene020442:intron | 15.0% |
| !!! | AAAGATGATTTTATTGTTTA+TGG | + | chr3.3:82591679-82591698 | MS.gene020442:CDS | 15.0% |
| !!! | ATAAATTTTCTTTATTTGTG+TGG | + | chr3.3:82590905-82590924 | MS.gene020442:intron | 15.0% |
| !!! | ATCGATTTTTTTTTTTTACA+AGG | - | chr3.3:82590500-82590519 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTTCTTTAAATC+CGG | - | chr3.3:82590762-82590781 | None:intergenic | 15.0% |
| !!! | CAACAAAATTAGTTTTTTTT+AGG | - | chr3.3:82590188-82590207 | None:intergenic | 15.0% |
| !!! | TTTAGAATTGAATAAGTATA+TGG | - | chr3.3:82589554-82589573 | None:intergenic | 15.0% |
| !! | AAAGTTAACATATGTAGATT+TGG | + | chr3.3:82591705-82591724 | MS.gene020442:CDS | 20.0% |
| !! | AAATTATTTCAGCTATGATT+TGG | + | chr3.3:82591422-82591441 | MS.gene020442:CDS | 20.0% |
| !! | AATTGAATAAGTATATGGAT+CGG | - | chr3.3:82589549-82589568 | None:intergenic | 20.0% |
| !! | AATTTCAAAATACTTTGTCT+TGG | - | chr3.3:82591407-82591426 | None:intergenic | 20.0% |
| !! | ATAGTAAAATCTTACTATCA+TGG | - | chr3.3:82590834-82590853 | None:intergenic | 20.0% |
| !! | ATATCATGATCATGATATTA+AGG | + | chr3.3:82589855-82589874 | MS.gene020442:intron | 20.0% |
| !! | ATATCATTCTTATTCGATAT+TGG | - | chr3.3:82590879-82590898 | None:intergenic | 20.0% |
| !! | CCAATATATAAACATGAAAT+AGG | - | chr3.3:82589903-82589922 | None:intergenic | 20.0% |
| !! | CCTATTTCATGTTTATATAT+TGG | + | chr3.3:82589900-82589919 | MS.gene020442:intron | 20.0% |
| !! | TATATAAACATGAAATAGGT+AGG | - | chr3.3:82589899-82589918 | None:intergenic | 20.0% |
| !! | TTTATGGGATAAAGATTAAA+GGG | + | chr3.3:82591740-82591759 | MS.gene020442:CDS | 20.0% |
| !!! | AAAGCATATTTTGAAATGAA+TGG | + | chr3.3:82590934-82590953 | MS.gene020442:intron | 20.0% |
| !!! | ATACTTATTCAATTCTAAAG+CGG | + | chr3.3:82589555-82589574 | MS.gene020442:CDS | 20.0% |
| !!! | TATTTGAAGCATATTTATCA+TGG | + | chr3.3:82590697-82590716 | MS.gene020442:intron | 20.0% |
| !!! | TTTTATGGGATAAAGATTAA+AGG | + | chr3.3:82591739-82591758 | MS.gene020442:CDS | 20.0% |
| !!! | TTTTGGCAGTTTTTTTTTAA+TGG | + | chr3.3:82590722-82590741 | MS.gene020442:intron | 20.0% |
| !!! | TTTTTTGTTAAGTAGTTTAG+TGG | - | chr3.3:82590603-82590622 | None:intergenic | 20.0% |
| ! | AAATCACAATTTGCCAAAAT+CGG | - | chr3.3:82591772-82591791 | None:intergenic | 25.0% |
| ! | AAATGTATAGGACAAATAAG+AGG | + | chr3.3:82591445-82591464 | MS.gene020442:CDS | 25.0% |
| ! | AAGTGAAAAAAAATTACTGC+AGG | - | chr3.3:82590066-82590085 | None:intergenic | 25.0% |
| ! | AGTGAAAAAAAATTACTGCA+GGG | - | chr3.3:82590065-82590084 | None:intergenic | 25.0% |
| ! | ATAATCCCATTTCCATTAAA+AGG | + | chr3.3:82591251-82591270 | MS.gene020442:CDS | 25.0% |
| ! | TAATCCCATTTCCATTAAAA+GGG | + | chr3.3:82591252-82591271 | MS.gene020442:CDS | 25.0% |
| ! | TTAAAATAGCTAGTGTTACA+AGG | - | chr3.3:82590659-82590678 | None:intergenic | 25.0% |
| ! | TTTGTTTGATCACGAAAATA+TGG | + | chr3.3:82590974-82590993 | MS.gene020442:intron | 25.0% |
| !! | GCATATTTATCATGGATTTT+TGG | + | chr3.3:82590705-82590724 | MS.gene020442:intron | 25.0% |
| !! | GGATAATTCTTTTCTTTTTG+AGG | - | chr3.3:82590436-82590455 | None:intergenic | 25.0% |
| !! | TGGAAGAAGCTAATTTTTAT+GGG | + | chr3.3:82591725-82591744 | MS.gene020442:CDS | 25.0% |
| !! | TTGGAAGAAGCTAATTTTTA+TGG | + | chr3.3:82591724-82591743 | MS.gene020442:CDS | 25.0% |
| AATGAATGAGAATCATGCAT+TGG | + | chr3.3:82591630-82591649 | MS.gene020442:CDS | 30.0% | |
| AATGTAAACTAGCACAAGAA+TGG | + | chr3.3:82591908-82591927 | MS.gene020442:CDS | 30.0% | |
| AATTGAGGTTTAGTGAGATT+TGG | - | chr3.3:82591211-82591230 | None:intergenic | 30.0% | |
| ACAGAATTTGATGAGAATTG+AGG | - | chr3.3:82591226-82591245 | None:intergenic | 30.0% | |
| ATACAATATTGTTCGAGTCT+TGG | + | chr3.3:82591934-82591953 | MS.gene020442:CDS | 30.0% | |
| ATGGCTTAAATAATGTCACA+AGG | - | chr3.3:82589986-82590005 | None:intergenic | 30.0% | |
| ATGGTAACAATTTCTTTACC+TGG | + | chr3.3:82591865-82591884 | MS.gene020442:CDS | 30.0% | |
| ATGTAAACTAGCACAAGAAT+GGG | + | chr3.3:82591909-82591928 | MS.gene020442:CDS | 30.0% | |
| ATTTAAGCCATCTGTTAGTT+TGG | + | chr3.3:82589995-82590014 | MS.gene020442:intron | 30.0% | |
| CAACAACTGTTGAAGAATAT+TGG | + | chr3.3:82591275-82591294 | MS.gene020442:CDS | 30.0% | |
| GAAGATGACAATGGTAATAA+TGG | + | chr3.3:82591838-82591857 | MS.gene020442:CDS | 30.0% | |
| GGTTGAAATTCTTGAAGTTT+GGG | - | chr3.3:82589443-82589462 | None:intergenic | 30.0% | |
| GTTGAAATTCTTGAAGTTTG+GGG | - | chr3.3:82589442-82589461 | None:intergenic | 30.0% | |
| TACCAAATGATGAAGTTGTT+TGG | - | chr3.3:82591350-82591369 | None:intergenic | 30.0% | |
| TAGTTCACATTCTTCAAATG+TGG | + | chr3.3:82591064-82591083 | MS.gene020442:intron | 30.0% | |
| TCATGCATTGGAAAAAATGA+TGG | + | chr3.3:82591642-82591661 | MS.gene020442:CDS | 30.0% | |
| TCTGATATATTAGATTCTCC+AGG | - | chr3.3:82591583-82591602 | None:intergenic | 30.0% | |
| TGAATAAGTGATGTGTTTCT+TGG | - | chr3.3:82590558-82590577 | None:intergenic | 30.0% | |
| TGCATATAACCTAAACTACA+TGG | + | chr3.3:82589498-82589517 | MS.gene020442:CDS | 30.0% | |
| TGGTAACAATTTCTTTACCT+GGG | + | chr3.3:82591866-82591885 | MS.gene020442:CDS | 30.0% | |
| TTACAAGGTAACTAAGAGAT+TGG | - | chr3.3:82590485-82590504 | None:intergenic | 30.0% | |
| TTAGCAAATCCATGTAGTTT+AGG | - | chr3.3:82589510-82589529 | None:intergenic | 30.0% | |
| TTATTACCATTGTCATCTTC+TGG | - | chr3.3:82591838-82591857 | None:intergenic | 30.0% | |
| TTCCAAACAACTTCATCATT+TGG | + | chr3.3:82591345-82591364 | MS.gene020442:CDS | 30.0% | |
| ! | AGTTGCTTTGAATCAATGAA+TGG | - | chr3.3:82591023-82591042 | None:intergenic | 30.0% |
| ! | ATGACAATGGTAATAATGGA+AGG | + | chr3.3:82591842-82591861 | MS.gene020442:CDS | 30.0% |
| ! | GCTATGATTTGGAAATGTAT+AGG | + | chr3.3:82591433-82591452 | MS.gene020442:CDS | 30.0% |
| !! | AAACATTGGTGCTTTTAAGT+CGG | - | chr3.3:82589599-82589618 | None:intergenic | 30.0% |
| !! | CTTGGTATTGATATTGGTAT+TGG | - | chr3.3:82591389-82591408 | None:intergenic | 30.0% |
| !! | CTTTGTCTTGGTATTGATAT+TGG | - | chr3.3:82591395-82591414 | None:intergenic | 30.0% |
| !! | GATATTGGTATTGGTTGATA+TGG | - | chr3.3:82591380-82591399 | None:intergenic | 30.0% |
| AAAGGAGAAAAAGCAAGATC+AGG | - | chr3.3:82589808-82589827 | None:intergenic | 35.0% | |
| AATCGATCGCTTTACTCAAT+TGG | + | chr3.3:82590513-82590532 | MS.gene020442:intron | 35.0% | |
| AGGGTTAGAATATCAGAATC+AGG | + | chr3.3:82589652-82589671 | MS.gene020442:CDS | 35.0% | |
| AGTAGCTACATAACTATCAG+TGG | - | chr3.3:82591308-82591327 | None:intergenic | 35.0% | |
| AGTATATGGATCGGATATAG+TGG | - | chr3.3:82589540-82589559 | None:intergenic | 35.0% | |
| CAAGGTTAATAGTATGCACA+AGG | - | chr3.3:82589968-82589987 | None:intergenic | 35.0% | |
| CGGTTGAAATTCTTGAAGTT+TGG | - | chr3.3:82589444-82589463 | None:intergenic | 35.0% | |
| CTTGTATATGATCATGTGCT+TGG | + | chr3.3:82589781-82589800 | MS.gene020442:CDS | 35.0% | |
| GAAAATGAATTCCCGACAAA+TGG | + | chr3.3:82591523-82591542 | MS.gene020442:CDS | 35.0% | |
| GAACATCTTACATCATTCGA+AGG | + | chr3.3:82590320-82590339 | MS.gene020442:intron | 35.0% | |
| GATATATTAGATTCTCCAGG+AGG | - | chr3.3:82591580-82591599 | None:intergenic | 35.0% | |
| GATTCATACTCACATGTTTC+AGG | + | chr3.3:82589628-82589647 | MS.gene020442:CDS | 35.0% | |
| GCTAGATATTCACTCGTTTA+AGG | - | chr3.3:82590581-82590600 | None:intergenic | 35.0% | |
| GCTTAAAGCTGTTAATTGCA+AGG | - | chr3.3:82590457-82590476 | None:intergenic | 35.0% | |
| TGCATTGGAAAAAATGATGG+AGG | + | chr3.3:82591645-82591664 | MS.gene020442:CDS | 35.0% | |
| TGTGAGTATGAATCAAGTAG+TGG | - | chr3.3:82589622-82589641 | None:intergenic | 35.0% | |
| TTCACATTCTTCAAATGTGG+AGG | + | chr3.3:82591067-82591086 | MS.gene020442:CDS | 35.0% | |
| ! | AACAGTTGTTGCCCTTTTAA+TGG | - | chr3.3:82591266-82591285 | None:intergenic | 35.0% |
| ! | ATACTCACATGTTTCAGGTA+GGG | + | chr3.3:82589633-82589652 | MS.gene020442:CDS | 35.0% |
| ! | CAATGGTAATAATGGAAGGA+TGG | + | chr3.3:82591846-82591865 | MS.gene020442:CDS | 35.0% |
| ! | GAATCAAGTAGTGGAAACAT+TGG | - | chr3.3:82589613-82589632 | None:intergenic | 35.0% |
| ! | GGACAAATAAGAGGAGATTT+TGG | + | chr3.3:82591454-82591473 | MS.gene020442:CDS | 35.0% |
| ! | GTGCTAGTTTACATTTCAGT+TGG | - | chr3.3:82591903-82591922 | None:intergenic | 35.0% |
| ! | GTTGCCCTTTTAATGGAAAT+GGG | - | chr3.3:82591259-82591278 | None:intergenic | 35.0% |
| ! | TGTTGCCCTTTTAATGGAAA+TGG | - | chr3.3:82591260-82591279 | None:intergenic | 35.0% |
| ! | TTGGAAAAAATGATGGAGGA+AGG | + | chr3.3:82591649-82591668 | MS.gene020442:CDS | 35.0% |
| ! | TTGGCAAATTGTGATTTTCG+AGG | + | chr3.3:82591775-82591794 | MS.gene020442:CDS | 35.0% |
| ! | TTTGGCATGTGAAGAGATTT+TGG | - | chr3.3:82591193-82591212 | None:intergenic | 35.0% |
| !! | AAAGGGCATCACAATTAACA+GGG | - | chr3.3:82590786-82590805 | None:intergenic | 35.0% |
| !! | AAATTGTGATTTTCGAGGTG+TGG | + | chr3.3:82591780-82591799 | MS.gene020442:CDS | 35.0% |
| !! | AATTGTGATTTTCGAGGTGT+GGG | + | chr3.3:82591781-82591800 | MS.gene020442:CDS | 35.0% |
| !! | CTTTTAAGTCGGATATTGAG+AGG | - | chr3.3:82589588-82589607 | None:intergenic | 35.0% |
| !!! | CTTTTAACTTCATCACCAAG+TGG | + | chr3.3:82591140-82591159 | MS.gene020442:CDS | 35.0% |
| !!! | TGATCTTGCTTTTTCTCCTT+TGG | + | chr3.3:82589807-82589826 | MS.gene020442:CDS | 35.0% |
| !!! | TTCTCCTTTGGTTTTTGTCA+AGG | + | chr3.3:82589819-82589838 | MS.gene020442:CDS | 35.0% |
| AATGGAGAGACAGAGTTAAC+CGG | + | chr3.3:82590740-82590759 | MS.gene020442:intron | 40.0% | |
| ATCGAAACAAGTTTACCTCC+TGG | + | chr3.3:82591562-82591581 | MS.gene020442:CDS | 40.0% | |
| CGCTTTACTCAATTGGTAGA+GGG | + | chr3.3:82590520-82590539 | MS.gene020442:intron | 40.0% | |
| CGTACCTTGACAAAAACCAA+AGG | - | chr3.3:82589826-82589845 | None:intergenic | 40.0% | |
| GAAATTCTTGAAGTTTGGGG+AGG | - | chr3.3:82589439-82589458 | None:intergenic | 40.0% | |
| TACTCAATTGGTAGAGGGTT+GGG | + | chr3.3:82590525-82590544 | MS.gene020442:intron | 40.0% | |
| TCGCTTTACTCAATTGGTAG+AGG | + | chr3.3:82590519-82590538 | MS.gene020442:intron | 40.0% | |
| TTACTCAATTGGTAGAGGGT+TGG | + | chr3.3:82590524-82590543 | MS.gene020442:intron | 40.0% | |
| ! | AAAATGATGGAGGAAGGTGA+AGG | + | chr3.3:82591655-82591674 | MS.gene020442:CDS | 40.0% |
| ! | AAGAGGAGATTTTGGACCTA+GGG | + | chr3.3:82591462-82591481 | MS.gene020442:CDS | 40.0% |
| ! | ACTATTTTCTTCACCACGAG+GGG | - | chr3.3:82589479-82589498 | None:intergenic | 40.0% |
| ! | AGCCATCTGTTAGTTTGGTT+TGG | + | chr3.3:82590000-82590019 | MS.gene020442:intron | 40.0% |
| ! | CACTATTTTCTTCACCACGA+GGG | - | chr3.3:82589480-82589499 | None:intergenic | 40.0% |
| ! | CATACTCACATGTTTCAGGT+AGG | + | chr3.3:82589632-82589651 | MS.gene020442:CDS | 40.0% |
| ! | GCCATCTGTTAGTTTGGTTT+GGG | + | chr3.3:82590001-82590020 | MS.gene020442:intron | 40.0% |
| ! | TAAGAGGAGATTTTGGACCT+AGG | + | chr3.3:82591461-82591480 | MS.gene020442:CDS | 40.0% |
| !! | CAAAGGGCATCACAATTAAC+AGG | - | chr3.3:82590787-82590806 | None:intergenic | 40.0% |
| !! | CCATCTGTTAGTTTGGTTTG+GGG | + | chr3.3:82590002-82590021 | MS.gene020442:intron | 40.0% |
| !! | TAAAGGGCAGAAACCGATTT+TGG | + | chr3.3:82591756-82591775 | MS.gene020442:CDS | 40.0% |
| AAATGTGGAGGACTATCCGT+GGG | + | chr3.3:82591079-82591098 | MS.gene020442:CDS | 45.0% | |
| AGTTGGTCAAGTTCTTTCCC+AGG | - | chr3.3:82591886-82591905 | None:intergenic | 45.0% | |
| CCCCAAACCAAACTAACAGA+TGG | - | chr3.3:82590005-82590024 | None:intergenic | 45.0% | |
| GCGTCGTTGCACTTGATAAA+CGG | - | chr3.3:82589682-82589701 | None:intergenic | 45.0% | |
| GTACATATCGTCACAACCCT+AGG | - | chr3.3:82591481-82591500 | None:intergenic | 45.0% | |
| GTTTATCAAGTGCAACGACG+CGG | + | chr3.3:82589681-82589700 | MS.gene020442:CDS | 45.0% | |
| TGAATTCCCGACAAATGGCT+CGG | + | chr3.3:82591528-82591547 | MS.gene020442:CDS | 45.0% | |
| TGGGGAGGAGTTTCCAAATT+AGG | - | chr3.3:82589424-82589443 | None:intergenic | 45.0% | |
| TTTATCAAGTGCAACGACGC+GGG | + | chr3.3:82589682-82589701 | MS.gene020442:CDS | 45.0% | |
| ! | GCACTATTTTCTTCACCACG+AGG | - | chr3.3:82589481-82589500 | None:intergenic | 45.0% |
| ! | GGCATGTGAAGAGATTTTGG+TGG | - | chr3.3:82591190-82591209 | None:intergenic | 45.0% |
| !!! | GGGTGATCAAGGTGTTGTTT+TGG | + | chr3.3:82591801-82591820 | MS.gene020442:CDS | 45.0% |
| !!! | GGTGTTGTTTTGGTTCTTCC+AGG | + | chr3.3:82591811-82591830 | MS.gene020442:CDS | 45.0% |
| AAGTGGAGTCACACACTAGC+TGG | + | chr3.3:82591157-82591176 | MS.gene020442:CDS | 50.0% | |
| AGCTAGTGTGTGACTCCACT+TGG | - | chr3.3:82591158-82591177 | None:intergenic | 50.0% | |
| CAAATGTGGAGGACTATCCG+TGG | + | chr3.3:82591078-82591097 | MS.gene020442:CDS | 50.0% | |
| CCAGGACCAGAAGATGACAA+TGG | + | chr3.3:82591829-82591848 | MS.gene020442:CDS | 50.0% | |
| CCATTGTCATCTTCTGGTCC+TGG | - | chr3.3:82591832-82591851 | None:intergenic | 50.0% | |
| CTCAACACCGAGCCATTTGT+CGG | - | chr3.3:82591538-82591557 | None:intergenic | 50.0% | |
| GAAAACGCTGCGTGAATGGT+TGG | + | chr3.3:82589732-82589751 | MS.gene020442:CDS | 50.0% | |
| GAGGCTGCGCAAATTGCAAA+GGG | - | chr3.3:82590803-82590822 | None:intergenic | 50.0% | |
| TACTATCATGGCCACCGATG+AGG | - | chr3.3:82590822-82590841 | None:intergenic | 50.0% | |
| TCAACACCGAGCCATTTGTC+GGG | - | chr3.3:82591537-82591556 | None:intergenic | 50.0% | |
| TGAGGCTGCGCAAATTGCAA+AGG | - | chr3.3:82590804-82590823 | None:intergenic | 50.0% | |
| TGCAATTTGCGCAGCCTCAT+CGG | + | chr3.3:82590805-82590824 | MS.gene020442:intron | 50.0% | |
| TTATCAAGTGCAACGACGCG+GGG | + | chr3.3:82589683-82589702 | MS.gene020442:CDS | 50.0% | |
| TTTCGAGGTGTGGGTGATCA+AGG | + | chr3.3:82591790-82591809 | MS.gene020442:CDS | 50.0% | |
| AATTTGCGCAGCCTCATCGG+TGG | + | chr3.3:82590808-82590827 | MS.gene020442:intron | 55.0% | |
| ACGAGGGGTTGCTGGAACTA+CGG | - | chr3.3:82589464-82589483 | None:intergenic | 55.0% | |
| ACTATCCGTGGGACTGAGCT+GGG | + | chr3.3:82591090-82591109 | MS.gene020442:CDS | 55.0% | |
| CTGAGCTGGGCTCACATTCT+TGG | + | chr3.3:82591103-82591122 | MS.gene020442:CDS | 55.0% | |
| GCGAGAAAACGCTGCGTGAA+TGG | + | chr3.3:82589728-82589747 | MS.gene020442:CDS | 55.0% | |
| TATCAAGTGCAACGACGCGG+GGG | + | chr3.3:82589684-82589703 | MS.gene020442:CDS | 55.0% | |
| GACTATCCGTGGGACTGAGC+TGG | + | chr3.3:82591089-82591108 | MS.gene020442:CDS | 60.0% | |
| GTAGTTCCAGCAACCCCTCG+TGG | + | chr3.3:82589463-82589482 | MS.gene020442:CDS | 60.0% | |
| TCTTCACCACGAGGGGTTGC+TGG | - | chr3.3:82589472-82589491 | None:intergenic | 60.0% | |
| GTGAGCCCAGCTCAGTCCCA+CGG | - | chr3.3:82591098-82591117 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 82589409 | 82591966 | 82589409 | ID=MS.gene020442 |
| chr3.3 | mRNA | 82589409 | 82591966 | 82589409 | ID=MS.gene020442.t1;Parent=MS.gene020442 |
| chr3.3 | exon | 82589409 | 82589840 | 82589409 | ID=MS.gene020442.t1.exon1;Parent=MS.gene020442.t1 |
| chr3.3 | CDS | 82589409 | 82589840 | 82589409 | ID=cds.MS.gene020442.t1;Parent=MS.gene020442.t1 |
| chr3.3 | exon | 82591067 | 82591966 | 82591067 | ID=MS.gene020442.t1.exon2;Parent=MS.gene020442.t1 |
| chr3.3 | CDS | 82591067 | 82591966 | 82591067 | ID=cds.MS.gene020442.t1;Parent=MS.gene020442.t1 |
| Gene Sequence |
| Protein sequence |
