Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022431.t1 | XP_013460947.1 | 97 | 540 | 14 | 1 | 1 | 538 | 1 | 540 | 2.40E-294 | 1020.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022431.t1 | Q84MA8 | 67.2 | 524 | 166 | 2 | 13 | 531 | 7 | 529 | 8.1e-203 | 708.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022431.t1 | A0A072UZW0 | 97.0 | 540 | 14 | 1 | 1 | 538 | 1 | 540 | 1.7e-294 | 1020.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31058 | MS.gene022431 | PPI |
| MS.gene06502 | MS.gene022431 | PPI |
| MS.gene022431 | MS.gene049377 | PPI |
| MS.gene013405 | MS.gene022431 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022431.t1 | MTR_3g075120 | 97.037 | 540 | 14 | 1 | 1 | 538 | 1 | 540 | 0.0 | 1067 |
| MS.gene022431.t1 | MTR_3g094320 | 49.013 | 557 | 239 | 5 | 25 | 537 | 28 | 583 | 0.0 | 554 |
| MS.gene022431.t1 | MTR_7g072600 | 53.571 | 56 | 26 | 0 | 182 | 237 | 18 | 73 | 7.49e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022431.t1 | AT5G50300 | 67.562 | 521 | 163 | 2 | 13 | 528 | 24 | 543 | 0.0 | 720 |
| MS.gene022431.t1 | AT5G50300 | 67.562 | 521 | 163 | 2 | 13 | 528 | 7 | 526 | 0.0 | 720 |
| MS.gene022431.t1 | AT3G10960 | 49.911 | 561 | 237 | 5 | 19 | 535 | 19 | 579 | 0.0 | 568 |
Find 137 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAGCAAGCCCCAGTTTC+TGG | 0.095177 | 3.2:-67771679 | None:intergenic |
| AACCAAGGTGTTGGGCTTAT+TGG | 0.202923 | 3.2:+67771607 | MS.gene022431:CDS |
| GTTTGTAACGGCGTTGTTTA+TGG | 0.215211 | 3.2:-67771035 | None:intergenic |
| CATGCAAGCCTAATAGATTT+TGG | 0.220227 | 3.2:-67771538 | None:intergenic |
| GTTAAAGGTAGTATGATTTA+TGG | 0.226860 | 3.2:+67771778 | MS.gene022431:CDS |
| TGGGCCTGATCCGGCTAATT+TGG | 0.234839 | 3.2:+67771627 | MS.gene022431:CDS |
| CTTGCATGTGCTGCTGGTAT+TGG | 0.252498 | 3.2:+67771553 | MS.gene022431:CDS |
| AACTTCAATGGCTATTGTTT+TGG | 0.253159 | 3.2:+67771450 | MS.gene022431:CDS |
| AAGTTCTGGCTTGGAGCTTT+TGG | 0.263465 | 3.2:+67771721 | MS.gene022431:CDS |
| ACCAAGGTGTTGGGCTTATT+GGG | 0.273447 | 3.2:+67771608 | MS.gene022431:CDS |
| CCCAGAAACTGGGGCTTGCT+TGG | 0.280194 | 3.2:+67771678 | MS.gene022431:CDS |
| TTGCATGTGCTGCTGGTATT+GGG | 0.306219 | 3.2:+67771554 | MS.gene022431:CDS |
| CCATCACCAAGTGGTGTATC+AGG | 0.320339 | 3.2:-67771856 | None:intergenic |
| AAAAGTATCGACCCAGAAAC+TGG | 0.321079 | 3.2:+67771667 | MS.gene022431:CDS |
| AGTTGCAAAGCCCAAAGTTC+TGG | 0.334679 | 3.2:+67771707 | MS.gene022431:CDS |
| AAGCTCCAAGCCAGAACTTT+GGG | 0.337032 | 3.2:-67771717 | None:intergenic |
| ACTATTGTAGGGTCAGCTTT+AGG | 0.337994 | 3.2:+67772117 | MS.gene022431:CDS |
| ATGCTGCAAGCATCATAAAT+TGG | 0.340022 | 3.2:+67772469 | MS.gene022431:CDS |
| TTTAACCTTGTTGGTTATCA+TGG | 0.341914 | 3.2:+67771406 | MS.gene022431:CDS |
| TTAGGTCTTGCTCCAGGTAT+GGG | 0.343050 | 3.2:+67771364 | MS.gene022431:CDS |
| GGTGAGTTTGTGGATGAAAA+AGG | 0.348399 | 3.2:+67772048 | MS.gene022431:CDS |
| AAACTTTGAAGGTGAATATA+TGG | 0.351162 | 3.2:+67772071 | MS.gene022431:CDS |
| GGTTTAATGAAGAATGTTAA+AGG | 0.354466 | 3.2:+67771763 | MS.gene022431:CDS |
| TTTAGGTCTTGCTCCAGGTA+TGG | 0.357659 | 3.2:+67771363 | MS.gene022431:CDS |
| AGCTTATACCAAAATCTATT+AGG | 0.366341 | 3.2:+67771530 | MS.gene022431:CDS |
| GTCCTTCACTAGTGATGGTT+GGG | 0.368109 | 3.2:+67772289 | MS.gene022431:CDS |
| ATGAGAGAGGGTGGTAGGAC+AGG | 0.368223 | 3.2:+67772180 | MS.gene022431:CDS |
| TCTTTGTGACATTTGTGTCT+TGG | 0.380620 | 3.2:+67771806 | MS.gene022431:CDS |
| CCAAGCAAGCCCCAGTTTCT+GGG | 0.387318 | 3.2:-67771678 | None:intergenic |
| GGATTAACGGCTGTGATCAT+TGG | 0.387358 | 3.2:+67772201 | MS.gene022431:CDS |
| ATAGCAAATGGTATTGTTGC+TGG | 0.390897 | 3.2:+67772411 | MS.gene022431:CDS |
| TACAACAACTGCAACATTTG+TGG | 0.398363 | 3.2:+67772143 | MS.gene022431:CDS |
| TTTGCTATGGAATAAGTTAG+AGG | 0.398585 | 3.2:-67772396 | None:intergenic |
| GATGCAGCTGGTACTATTGT+AGG | 0.399262 | 3.2:+67772105 | MS.gene022431:CDS |
| CCAGAAACTGGGGCTTGCTT+GGG | 0.399883 | 3.2:+67771679 | MS.gene022431:CDS |
| TGTTGTCAAGTGTTCCTCCA+TGG | 0.400237 | 3.2:+67772259 | MS.gene022431:CDS |
| AATGGTATTGTTGCTGGTAT+TGG | 0.400571 | 3.2:+67772417 | MS.gene022431:CDS |
| AGGTTCCGCCTGAGCCGGTT+AGG | 0.405081 | 3.2:-67771177 | None:intergenic |
| GGCTGAGATTGGTGAGTTTG+TGG | 0.411324 | 3.2:+67772038 | MS.gene022431:CDS |
| AAAGCTCCAAGCCAGAACTT+TGG | 0.419444 | 3.2:-67771718 | None:intergenic |
| GCAAGCATCATAAATTGGTT+GGG | 0.419855 | 3.2:+67772474 | MS.gene022431:CDS |
| ATGGTTTCTTCTGTTGCAAT+GGG | 0.423017 | 3.2:+67771322 | MS.gene022431:CDS |
| GTTGTCAAGTGTTCCTCCAT+GGG | 0.424101 | 3.2:+67772260 | MS.gene022431:CDS |
| TTCAAGTTAACCAAGGTGTT+GGG | 0.433354 | 3.2:+67771599 | MS.gene022431:CDS |
| CAAGCTTCATATCCAGCATT+AGG | 0.435994 | 3.2:-67771250 | None:intergenic |
| GAGGAACACTTGACAACAAA+GGG | 0.436205 | 3.2:-67772254 | None:intergenic |
| CAACACCTTGGTTAACTTGA+AGG | 0.438439 | 3.2:-67771597 | None:intergenic |
| GGTTAGGATGGTTGCGTTGA+CGG | 0.441711 | 3.2:-67771161 | None:intergenic |
| CAAAGCCCAAAGTTCTGGCT+TGG | 0.453258 | 3.2:+67771712 | MS.gene022431:CDS |
| ATTAGGCTTGCATGTGCTGC+TGG | 0.458483 | 3.2:+67771547 | MS.gene022431:CDS |
| GACTGGTATAATGTATACTA+TGG | 0.460238 | 3.2:+67772017 | MS.gene022431:CDS |
| TAAGCATTGGGCCCCATACC+TGG | 0.463025 | 3.2:-67771376 | None:intergenic |
| TATGGTTTCTTCTGTTGCAA+TGG | 0.464732 | 3.2:+67771321 | MS.gene022431:CDS |
| TCTTTGTTGTAACTTGAAGT+AGG | 0.472333 | 3.2:-67771071 | None:intergenic |
| GTAACCAAATTAGCCGGATC+AGG | 0.472560 | 3.2:-67771631 | None:intergenic |
| TGCAACTTCTGTAACTGCTA+TGG | 0.474498 | 3.2:+67771303 | MS.gene022431:CDS |
| GGGTGGTAGGACAGGATTAA+CGG | 0.474590 | 3.2:+67772188 | MS.gene022431:CDS |
| AAGGGAAGTTTGGGAGGCAT+TGG | 0.475987 | 3.2:+67771963 | MS.gene022431:CDS |
| GTTAAAAGCTAAATAAGCAT+TGG | 0.476658 | 3.2:-67771389 | None:intergenic |
| GTGTCGGCCACTGCAACAAC+AGG | 0.478730 | 3.2:+67772534 | MS.gene022431:CDS |
| TTAAAAGCTAAATAAGCATT+GGG | 0.480173 | 3.2:-67771388 | None:intergenic |
| CTAACTTATTCCATAGCAAA+TGG | 0.481739 | 3.2:+67772399 | MS.gene022431:CDS |
| AATCTCATATCAAACTTCAA+TGG | 0.485501 | 3.2:+67771438 | MS.gene022431:CDS |
| CTGATACACCACTTGGTGAT+GGG | 0.491740 | 3.2:+67771857 | MS.gene022431:CDS |
| CTTCAAGTTAACCAAGGTGT+TGG | 0.492330 | 3.2:+67771598 | MS.gene022431:CDS |
| TGCAAGCATCATAAATTGGT+TGG | 0.492995 | 3.2:+67772473 | MS.gene022431:CDS |
| CCTGATACACCACTTGGTGA+TGG | 0.494415 | 3.2:+67771856 | MS.gene022431:CDS |
| GCAACCATCCTAACCGGCTC+AGG | 0.495398 | 3.2:+67771169 | MS.gene022431:CDS |
| ACATTTGTGGAATCATCAGC+TGG | 0.495434 | 3.2:+67772156 | MS.gene022431:CDS |
| CTTCCTTTAGGTCTTGCTCC+AGG | 0.495831 | 3.2:+67771358 | MS.gene022431:CDS |
| GGCTAATTTGGTTACGATGA+CGG | 0.502335 | 3.2:+67771639 | MS.gene022431:CDS |
| GGTCCTTCACTAGTGATGGT+TGG | 0.503897 | 3.2:+67772288 | MS.gene022431:CDS |
| CGAACAGTCTGCAACGGAGC+AGG | 0.504315 | 3.2:-67771197 | None:intergenic |
| TGGGCTTATTGGGCCTGATC+CGG | 0.513185 | 3.2:+67771618 | MS.gene022431:CDS |
| GGAGCAGGTTCCGCCTGAGC+CGG | 0.514286 | 3.2:-67771182 | None:intergenic |
| AGTGTTCCTCCATGGGCTAT+AGG | 0.514609 | 3.2:+67772267 | MS.gene022431:CDS |
| GTCAACGCAACCATCCTAAC+CGG | 0.515994 | 3.2:+67771163 | MS.gene022431:CDS |
| GCCGTTACAAACAGCTTCAT+AGG | 0.518154 | 3.2:+67771046 | MS.gene022431:CDS |
| GAAACTGGGGCTTGCTTGGG+TGG | 0.519213 | 3.2:+67771682 | MS.gene022431:CDS |
| CTTGTTGGTTATCATGGAAG+TGG | 0.521160 | 3.2:+67771412 | MS.gene022431:CDS |
| TCCGCCTGAGCCGGTTAGGA+TGG | 0.522218 | 3.2:-67771173 | None:intergenic |
| TAAATTGGTTGGGGAAAATG+AGG | 0.522940 | 3.2:+67772484 | MS.gene022431:CDS |
| TAAGATTGAATCAACTGCAT+GGG | 0.524569 | 3.2:+67771915 | MS.gene022431:CDS |
| TATAGGTCCTTCACTAGTGA+TGG | 0.527969 | 3.2:+67772284 | MS.gene022431:CDS |
| TTAGGCTTCAGTGTGCAATC+TGG | 0.529240 | 3.2:-67771232 | None:intergenic |
| ATACCTGGAGCAAGACCTAA+AGG | 0.530459 | 3.2:-67771361 | None:intergenic |
| AATATAGAAGTATGGGAGGA+GGG | 0.534212 | 3.2:+67770957 | None:intergenic |
| TGCACACTGAAGCCTAATGC+TGG | 0.535912 | 3.2:+67771238 | MS.gene022431:CDS |
| AGCAACAATACCATTTGCTA+TGG | 0.536834 | 3.2:-67772409 | None:intergenic |
| AAAATCATTATAGCAAAAGC+AGG | 0.540709 | 3.2:-67772369 | None:intergenic |
| TAATATAGAAGTATGGGAGG+AGG | 0.545354 | 3.2:+67770956 | None:intergenic |
| TAGGTCTTGCTCCAGGTATG+GGG | 0.545422 | 3.2:+67771365 | MS.gene022431:CDS |
| TAATAAAAGGGAAGTTTGGG+AGG | 0.550227 | 3.2:+67771957 | MS.gene022431:CDS |
| GCATATATTGTTGATGCAGC+TGG | 0.552779 | 3.2:+67772093 | MS.gene022431:CDS |
| GGTTGGGGAAAATGAGGAGA+AGG | 0.555614 | 3.2:+67772490 | MS.gene022431:CDS |
| GTTGATGTAATTGCTATGAC+TGG | 0.557035 | 3.2:+67772000 | MS.gene022431:CDS |
| GTAAGCCATGGTTAGAAAAG+TGG | 0.557631 | 3.2:-67771131 | None:intergenic |
| AACAACAGGTGTTGACTCAA+TGG | 0.559073 | 3.2:+67772548 | MS.gene022431:CDS |
| AAAGTATCGACCCAGAAACT+GGG | 0.559581 | 3.2:+67771668 | MS.gene022431:CDS |
| CAAGCATCATAAATTGGTTG+GGG | 0.560273 | 3.2:+67772475 | MS.gene022431:CDS |
| CTGGGATGAGAGAGGGTGGT+AGG | 0.562053 | 3.2:+67772175 | MS.gene022431:CDS |
| AAGTTGTGAAGGATATTGAT+TGG | 0.562846 | 3.2:+67772325 | MS.gene022431:CDS |
| ATGCAGCTGGTACTATTGTA+GGG | 0.565450 | 3.2:+67772106 | MS.gene022431:CDS |
| TTGTTGCAGTGGCCGACACT+TGG | 0.566804 | 3.2:-67772530 | None:intergenic |
| GACGGTTATGATGTAAGCCA+TGG | 0.571881 | 3.2:-67771143 | None:intergenic |
| ATAAGATTGAATCAACTGCA+TGG | 0.577206 | 3.2:+67771914 | MS.gene022431:CDS |
| ACCATCCTAACCGGCTCAGG+CGG | 0.579563 | 3.2:+67771172 | MS.gene022431:CDS |
| ATGTATACTATGGCTGAGAT+TGG | 0.581796 | 3.2:+67772027 | MS.gene022431:CDS |
| TCCTATGAAGCTGTTTGTAA+CGG | 0.584350 | 3.2:-67771047 | None:intergenic |
| GCCCAATAAGCCCAACACCT+TGG | 0.585757 | 3.2:-67771609 | None:intergenic |
| ACCCCAACCATCACTAGTGA+AGG | 0.592025 | 3.2:-67772291 | None:intergenic |
| AATGAGGAGAAGGATGATCA+AGG | 0.597156 | 3.2:+67772500 | MS.gene022431:CDS |
| TCCTTCACTAGTGATGGTTG+GGG | 0.600145 | 3.2:+67772290 | MS.gene022431:CDS |
| GTCATCGTAACCAAATTAGC+CGG | 0.603620 | 3.2:-67771637 | None:intergenic |
| AATGATGATGAAAGTTGTGA+AGG | 0.608328 | 3.2:+67772314 | MS.gene022431:CDS |
| GGTTAGAAAAGTGGCAGTTG+CGG | 0.614796 | 3.2:-67771122 | None:intergenic |
| ATCATCAGCTGGGATGAGAG+AGG | 0.620208 | 3.2:+67772167 | MS.gene022431:CDS |
| TCATCAGCTGGGATGAGAGA+GGG | 0.625775 | 3.2:+67772168 | MS.gene022431:CDS |
| AGTGAAGGACCTATAGCCCA+TGG | 0.627407 | 3.2:-67772276 | None:intergenic |
| GTGCAATCTGGTGTTGCAGT+AGG | 0.631629 | 3.2:-67771220 | None:intergenic |
| GTCAACACCTGTTGTTGCAG+TGG | 0.633263 | 3.2:-67772541 | None:intergenic |
| ATGGGAGGAGGGAAAGCATG+TGG | 0.635626 | 3.2:+67770968 | MS.gene022431:CDS |
| GGAGGAACACTTGACAACAA+AGG | 0.635885 | 3.2:-67772255 | None:intergenic |
| GTGGGCCTTCAAGTTAACCA+AGG | 0.637659 | 3.2:+67771592 | MS.gene022431:CDS |
| CACTTCCATGATAACCAACA+AGG | 0.638963 | 3.2:-67771411 | None:intergenic |
| CTGGAGCAAGACCTAAAGGA+AGG | 0.643586 | 3.2:-67771357 | None:intergenic |
| CTAAAATTCCCATCACCAAG+TGG | 0.643825 | 3.2:-67771865 | None:intergenic |
| CAAGGAGCATAACCAAGTGT+CGG | 0.645951 | 3.2:+67772518 | MS.gene022431:CDS |
| CATTTGTGGAATCATCAGCT+GGG | 0.649553 | 3.2:+67772157 | MS.gene022431:CDS |
| AACAGGTGTTGACTCAATGG+TGG | 0.650221 | 3.2:+67772551 | MS.gene022431:CDS |
| AATTAATATAGAAGTATGGG+AGG | 0.654250 | 3.2:+67770953 | None:intergenic |
| AGTAGGCGAACAGTCTGCAA+CGG | 0.671171 | 3.2:-67771203 | None:intergenic |
| AAGTATCGACCCAGAAACTG+GGG | 0.678648 | 3.2:+67771669 | MS.gene022431:CDS |
| TCAGCTGGGATGAGAGAGGG+TGG | 0.679695 | 3.2:+67772171 | MS.gene022431:CDS |
| GTCTTGGTTTAGACACACTG+AGG | 0.729855 | 3.2:+67771822 | MS.gene022431:CDS |
| GAAGGACCTATAGCCCATGG+AGG | 0.763046 | 3.2:-67772273 | None:intergenic |
| AGGAACACTTGACAACAAAG+GGG | 0.764521 | 3.2:-67772253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAGCTAAATAAGCATT+GGG | - | chr3.2:67771391-67771410 | None:intergenic | 20.0% |
| !!! | ACTTTGGTGATTTTAATAAA+AGG | + | chr3.2:67771944-67771963 | MS.gene022431:CDS | 20.0% |
| !!! | ATTTTAATAAAAGGGAAGTT+TGG | + | chr3.2:67771953-67771972 | MS.gene022431:CDS | 20.0% |
| !!! | CTTTGGTGATTTTAATAAAA+GGG | + | chr3.2:67771945-67771964 | MS.gene022431:CDS | 20.0% |
| !!! | TTTTAATAAAAGGGAAGTTT+GGG | + | chr3.2:67771954-67771973 | MS.gene022431:CDS | 20.0% |
| ! | AAAATCATTATAGCAAAAGC+AGG | - | chr3.2:67772372-67772391 | None:intergenic | 25.0% |
| ! | AATCTCATATCAAACTTCAA+TGG | + | chr3.2:67771438-67771457 | MS.gene022431:CDS | 25.0% |
| ! | AGCTTATACCAAAATCTATT+AGG | + | chr3.2:67771530-67771549 | MS.gene022431:CDS | 25.0% |
| ! | GGTTTAATGAAGAATGTTAA+AGG | + | chr3.2:67771763-67771782 | MS.gene022431:CDS | 25.0% |
| ! | GTTAAAAGCTAAATAAGCAT+TGG | - | chr3.2:67771392-67771411 | None:intergenic | 25.0% |
| ! | GTTAAAGGTAGTATGATTTA+TGG | + | chr3.2:67771778-67771797 | MS.gene022431:CDS | 25.0% |
| !! | AAACTTTGAAGGTGAATATA+TGG | + | chr3.2:67772071-67772090 | MS.gene022431:CDS | 25.0% |
| !!! | TATTTAGCTTTTAACCTTGT+TGG | + | chr3.2:67771397-67771416 | MS.gene022431:CDS | 25.0% |
| AAAAAACACATGGACTCAAA+TGG | + | chr3.2:67771006-67771025 | MS.gene022431:CDS | 30.0% | |
| AAGTTGTGAAGGATATTGAT+TGG | + | chr3.2:67772325-67772344 | MS.gene022431:CDS | 30.0% | |
| AGCCAAAACAAAAAATGACT+TGG | + | chr3.2:67771276-67771295 | MS.gene022431:CDS | 30.0% | |
| ATAAGATTGAATCAACTGCA+TGG | + | chr3.2:67771914-67771933 | MS.gene022431:CDS | 30.0% | |
| CTAACTTATTCCATAGCAAA+TGG | + | chr3.2:67772399-67772418 | MS.gene022431:CDS | 30.0% | |
| GACTGGTATAATGTATACTA+TGG | + | chr3.2:67772017-67772036 | MS.gene022431:CDS | 30.0% | |
| GATGAAAAAGGAAACTTTGA+AGG | + | chr3.2:67772060-67772079 | MS.gene022431:CDS | 30.0% | |
| TAAGATTGAATCAACTGCAT+GGG | + | chr3.2:67771915-67771934 | MS.gene022431:CDS | 30.0% | |
| TTTCAAGGCTAAAAAACACA+TGG | + | chr3.2:67770996-67771015 | MS.gene022431:CDS | 30.0% | |
| ! | AACTTCAATGGCTATTGTTT+TGG | + | chr3.2:67771450-67771469 | MS.gene022431:CDS | 30.0% |
| ! | AATGATGATGAAAGTTGTGA+AGG | + | chr3.2:67772314-67772333 | MS.gene022431:CDS | 30.0% |
| ! | CAAAACAAAAAATGACTTGG+TGG | + | chr3.2:67771279-67771298 | MS.gene022431:CDS | 30.0% |
| ! | TCTTTGTTGTAACTTGAAGT+AGG | - | chr3.2:67771074-67771093 | None:intergenic | 30.0% |
| ! | TTTAACCTTGTTGGTTATCA+TGG | + | chr3.2:67771406-67771425 | MS.gene022431:CDS | 30.0% |
| ! | TTTGCTATGGAATAAGTTAG+AGG | - | chr3.2:67772399-67772418 | None:intergenic | 30.0% |
| !!! | CACCAAGTCATTTTTTGTTT+TGG | - | chr3.2:67771281-67771300 | None:intergenic | 30.0% |
| !!! | TTTCTTTTAGCTTCTGCTTT+TGG | + | chr3.2:67771487-67771506 | MS.gene022431:CDS | 30.0% |
| !!! | TTTTTAGCTAACCTTCCTTT+AGG | + | chr3.2:67771346-67771365 | MS.gene022431:CDS | 30.0% |
| AATGGTATTGTTGCTGGTAT+TGG | + | chr3.2:67772417-67772436 | MS.gene022431:CDS | 35.0% | |
| ATAGCAAATGGTATTGTTGC+TGG | + | chr3.2:67772411-67772430 | MS.gene022431:CDS | 35.0% | |
| ATGCTGCAAGCATCATAAAT+TGG | + | chr3.2:67772469-67772488 | MS.gene022431:CDS | 35.0% | |
| ATGGTTTCTTCTGTTGCAAT+GGG | + | chr3.2:67771322-67771341 | MS.gene022431:CDS | 35.0% | |
| ATGTATACTATGGCTGAGAT+TGG | + | chr3.2:67772027-67772046 | MS.gene022431:CDS | 35.0% | |
| CAAGCATCATAAATTGGTTG+GGG | + | chr3.2:67772475-67772494 | MS.gene022431:CDS | 35.0% | |
| GCAAGCATCATAAATTGGTT+GGG | + | chr3.2:67772474-67772493 | MS.gene022431:CDS | 35.0% | |
| GTTGATGTAATTGCTATGAC+TGG | + | chr3.2:67772000-67772019 | MS.gene022431:CDS | 35.0% | |
| TAAATTGGTTGGGGAAAATG+AGG | + | chr3.2:67772484-67772503 | MS.gene022431:CDS | 35.0% | |
| TAATAAAAGGGAAGTTTGGG+AGG | + | chr3.2:67771957-67771976 | MS.gene022431:CDS | 35.0% | |
| TACAACAACTGCAACATTTG+TGG | + | chr3.2:67772143-67772162 | MS.gene022431:CDS | 35.0% | |
| TATGGTTTCTTCTGTTGCAA+TGG | + | chr3.2:67771321-67771340 | MS.gene022431:CDS | 35.0% | |
| TCCTATGAAGCTGTTTGTAA+CGG | - | chr3.2:67771050-67771069 | None:intergenic | 35.0% | |
| TCTTTGTGACATTTGTGTCT+TGG | + | chr3.2:67771806-67771825 | MS.gene022431:CDS | 35.0% | |
| TGCAAGCATCATAAATTGGT+TGG | + | chr3.2:67772473-67772492 | MS.gene022431:CDS | 35.0% | |
| ! | AAGCATGTGGTGTATTTTCA+AGG | + | chr3.2:67770981-67771000 | MS.gene022431:CDS | 35.0% |
| ! | AGCAACAATACCATTTGCTA+TGG | - | chr3.2:67772412-67772431 | None:intergenic | 35.0% |
| ! | CATGCAAGCCTAATAGATTT+TGG | - | chr3.2:67771541-67771560 | None:intergenic | 35.0% |
| ! | GGTTTTCTTATCACAAGCTA+CGG | + | chr3.2:67771742-67771761 | MS.gene022431:CDS | 35.0% |
| ! | TATTTTCCTGATACACCACT+TGG | + | chr3.2:67771850-67771869 | MS.gene022431:CDS | 35.0% |
| ! | TTCAAGTTAACCAAGGTGTT+GGG | + | chr3.2:67771599-67771618 | MS.gene022431:CDS | 35.0% |
| !! | GGGCTTTTTATTGCTTTTGT+GGG | + | chr3.2:67771574-67771593 | MS.gene022431:CDS | 35.0% |
| !! | TGGGCTTTTTATTGCTTTTG+TGG | + | chr3.2:67771573-67771592 | MS.gene022431:CDS | 35.0% |
| !!! | ACTGCATGGGTTTTTAACTT+TGG | + | chr3.2:67771928-67771947 | MS.gene022431:CDS | 35.0% |
| !!! | ATGGCTATTGTTTTGGTTGA+AGG | + | chr3.2:67771457-67771476 | MS.gene022431:CDS | 35.0% |
| AATGAGGAGAAGGATGATCA+AGG | + | chr3.2:67772500-67772519 | MS.gene022431:CDS | 40.0% | |
| ACATTTGTGGAATCATCAGC+TGG | + | chr3.2:67772156-67772175 | MS.gene022431:CDS | 40.0% | |
| ACTATTGTAGGGTCAGCTTT+AGG | + | chr3.2:67772117-67772136 | MS.gene022431:CDS | 40.0% | |
| AGGAACACTTGACAACAAAG+GGG | - | chr3.2:67772256-67772275 | None:intergenic | 40.0% | |
| ATGCAGCTGGTACTATTGTA+GGG | + | chr3.2:67772106-67772125 | MS.gene022431:CDS | 40.0% | |
| CAAGCTTCATATCCAGCATT+AGG | - | chr3.2:67771253-67771272 | None:intergenic | 40.0% | |
| CACTTCCATGATAACCAACA+AGG | - | chr3.2:67771414-67771433 | None:intergenic | 40.0% | |
| CATTTGTGGAATCATCAGCT+GGG | + | chr3.2:67772157-67772176 | MS.gene022431:CDS | 40.0% | |
| CTAAAATTCCCATCACCAAG+TGG | - | chr3.2:67771868-67771887 | None:intergenic | 40.0% | |
| GAGGAACACTTGACAACAAA+GGG | - | chr3.2:67772257-67772276 | None:intergenic | 40.0% | |
| GCATATATTGTTGATGCAGC+TGG | + | chr3.2:67772093-67772112 | MS.gene022431:CDS | 40.0% | |
| GGCTAATTTGGTTACGATGA+CGG | + | chr3.2:67771639-67771658 | MS.gene022431:CDS | 40.0% | |
| GGTGAGTTTGTGGATGAAAA+AGG | + | chr3.2:67772048-67772067 | MS.gene022431:CDS | 40.0% | |
| GTAAGCCATGGTTAGAAAAG+TGG | - | chr3.2:67771134-67771153 | None:intergenic | 40.0% | |
| GTCATCGTAACCAAATTAGC+CGG | - | chr3.2:67771640-67771659 | None:intergenic | 40.0% | |
| GTTTGTAACGGCGTTGTTTA+TGG | - | chr3.2:67771038-67771057 | None:intergenic | 40.0% | |
| TATAGGTCCTTCACTAGTGA+TGG | + | chr3.2:67772284-67772303 | MS.gene022431:CDS | 40.0% | |
| TGCAACTTCTGTAACTGCTA+TGG | + | chr3.2:67771303-67771322 | MS.gene022431:CDS | 40.0% | |
| ! | CAACACCTTGGTTAACTTGA+AGG | - | chr3.2:67771600-67771619 | None:intergenic | 40.0% |
| ! | CTTCAAGTTAACCAAGGTGT+TGG | + | chr3.2:67771598-67771617 | MS.gene022431:CDS | 40.0% |
| ! | CTTGTTGGTTATCATGGAAG+TGG | + | chr3.2:67771412-67771431 | MS.gene022431:CDS | 40.0% |
| ! | TTCTGGGTCGATACTTTTAC+AGG | - | chr3.2:67771665-67771684 | None:intergenic | 40.0% |
| !! | AAAAGTATCGACCCAGAAAC+TGG | + | chr3.2:67771667-67771686 | MS.gene022431:CDS | 40.0% |
| !! | AAAGTATCGACCCAGAAACT+GGG | + | chr3.2:67771668-67771687 | MS.gene022431:CDS | 40.0% |
| !! | AACAACAGGTGTTGACTCAA+TGG | + | chr3.2:67772548-67772567 | MS.gene022431:CDS | 40.0% |
| !!! | AACTGCCACTTTTCTAACCA+TGG | + | chr3.2:67771126-67771145 | MS.gene022431:CDS | 40.0% |
| !!! | GCTTCTGCTTTTGGTTTAAG+AGG | + | chr3.2:67771496-67771515 | MS.gene022431:CDS | 40.0% |
| AAAGCTCCAAGCCAGAACTT+TGG | - | chr3.2:67771721-67771740 | None:intergenic | 45.0% | |
| AAGCTCCAAGCCAGAACTTT+GGG | - | chr3.2:67771720-67771739 | None:intergenic | 45.0% | |
| AGTTGCAAAGCCCAAAGTTC+TGG | + | chr3.2:67771707-67771726 | MS.gene022431:CDS | 45.0% | |
| ATACCTGGAGCAAGACCTAA+AGG | - | chr3.2:67771364-67771383 | None:intergenic | 45.0% | |
| GACGGTTATGATGTAAGCCA+TGG | - | chr3.2:67771146-67771165 | None:intergenic | 45.0% | |
| GATGCAGCTGGTACTATTGT+AGG | + | chr3.2:67772105-67772124 | MS.gene022431:CDS | 45.0% | |
| GCCGTTACAAACAGCTTCAT+AGG | + | chr3.2:67771046-67771065 | MS.gene022431:CDS | 45.0% | |
| GGAGGAACACTTGACAACAA+AGG | - | chr3.2:67772258-67772277 | None:intergenic | 45.0% | |
| GGATTAACGGCTGTGATCAT+TGG | + | chr3.2:67772201-67772220 | MS.gene022431:CDS | 45.0% | |
| GGTTAGAAAAGTGGCAGTTG+CGG | - | chr3.2:67771125-67771144 | None:intergenic | 45.0% | |
| GTAACCAAATTAGCCGGATC+AGG | - | chr3.2:67771634-67771653 | None:intergenic | 45.0% | |
| GTCCTTCACTAGTGATGGTT+GGG | + | chr3.2:67772289-67772308 | MS.gene022431:CDS | 45.0% | |
| GTCTTGGTTTAGACACACTG+AGG | + | chr3.2:67771822-67771841 | MS.gene022431:CDS | 45.0% | |
| GTTGTCAAGTGTTCCTCCAT+GGG | + | chr3.2:67772260-67772279 | MS.gene022431:CDS | 45.0% | |
| TCCTTCACTAGTGATGGTTG+GGG | + | chr3.2:67772290-67772309 | MS.gene022431:CDS | 45.0% | |
| TGTTGTCAAGTGTTCCTCCA+TGG | + | chr3.2:67772259-67772278 | MS.gene022431:CDS | 45.0% | |
| TTAGGCTTCAGTGTGCAATC+TGG | - | chr3.2:67771235-67771254 | None:intergenic | 45.0% | |
| TTAGGTCTTGCTCCAGGTAT+GGG | + | chr3.2:67771364-67771383 | MS.gene022431:CDS | 45.0% | |
| TTTAGGTCTTGCTCCAGGTA+TGG | + | chr3.2:67771363-67771382 | MS.gene022431:CDS | 45.0% | |
| ! | CAAGGAGCATAACCAAGTGT+CGG | + | chr3.2:67772518-67772537 | MS.gene022431:CDS | 45.0% |
| ! | CTGATACACCACTTGGTGAT+GGG | + | chr3.2:67771857-67771876 | MS.gene022431:CDS | 45.0% |
| ! | TTGCATGTGCTGCTGGTATT+GGG | + | chr3.2:67771554-67771573 | MS.gene022431:CDS | 45.0% |
| !! | AACAGGTGTTGACTCAATGG+TGG | + | chr3.2:67772551-67772570 | MS.gene022431:CDS | 45.0% |
| !! | AACCAAGGTGTTGGGCTTAT+TGG | + | chr3.2:67771607-67771626 | MS.gene022431:CDS | 45.0% |
| !! | AAGTATCGACCCAGAAACTG+GGG | + | chr3.2:67771669-67771688 | MS.gene022431:CDS | 45.0% |
| !! | ACCAAGGTGTTGGGCTTATT+GGG | + | chr3.2:67771608-67771627 | MS.gene022431:CDS | 45.0% |
| !!! | AAGTTCTGGCTTGGAGCTTT+TGG | + | chr3.2:67771721-67771740 | MS.gene022431:CDS | 45.0% |
| ACCCCAACCATCACTAGTGA+AGG | - | chr3.2:67772294-67772313 | None:intergenic | 50.0% | |
| AGTAGGCGAACAGTCTGCAA+CGG | - | chr3.2:67771206-67771225 | None:intergenic | 50.0% | |
| AGTGAAGGACCTATAGCCCA+TGG | - | chr3.2:67772279-67772298 | None:intergenic | 50.0% | |
| ATCATCAGCTGGGATGAGAG+AGG | + | chr3.2:67772167-67772186 | MS.gene022431:CDS | 50.0% | |
| ATTAGGCTTGCATGTGCTGC+TGG | + | chr3.2:67771547-67771566 | MS.gene022431:CDS | 50.0% | |
| CCATCACCAAGTGGTGTATC+AGG | - | chr3.2:67771859-67771878 | None:intergenic | 50.0% | |
| CTGGAGCAAGACCTAAAGGA+AGG | - | chr3.2:67771360-67771379 | None:intergenic | 50.0% | |
| CTTCCTTTAGGTCTTGCTCC+AGG | + | chr3.2:67771358-67771377 | MS.gene022431:CDS | 50.0% | |
| GGCTGAGATTGGTGAGTTTG+TGG | + | chr3.2:67772038-67772057 | MS.gene022431:CDS | 50.0% | |
| GGGTGGTAGGACAGGATTAA+CGG | + | chr3.2:67772188-67772207 | MS.gene022431:CDS | 50.0% | |
| GGTCCTTCACTAGTGATGGT+TGG | + | chr3.2:67772288-67772307 | MS.gene022431:CDS | 50.0% | |
| GGTTAGGATGGTTGCGTTGA+CGG | - | chr3.2:67771164-67771183 | None:intergenic | 50.0% | |
| GGTTGGGGAAAATGAGGAGA+AGG | + | chr3.2:67772490-67772509 | MS.gene022431:CDS | 50.0% | |
| GTCAACACCTGTTGTTGCAG+TGG | - | chr3.2:67772544-67772563 | None:intergenic | 50.0% | |
| GTCAACGCAACCATCCTAAC+CGG | + | chr3.2:67771163-67771182 | MS.gene022431:CDS | 50.0% | |
| TAGGTCTTGCTCCAGGTATG+GGG | + | chr3.2:67771365-67771384 | MS.gene022431:CDS | 50.0% | |
| TCATCAGCTGGGATGAGAGA+GGG | + | chr3.2:67772168-67772187 | MS.gene022431:CDS | 50.0% | |
| TGCACACTGAAGCCTAATGC+TGG | + | chr3.2:67771238-67771257 | MS.gene022431:CDS | 50.0% | |
| ! | AAGGGAAGTTTGGGAGGCAT+TGG | + | chr3.2:67771963-67771982 | MS.gene022431:CDS | 50.0% |
| ! | AGTGTTCCTCCATGGGCTAT+AGG | + | chr3.2:67772267-67772286 | MS.gene022431:CDS | 50.0% |
| ! | CAAAGCCCAAAGTTCTGGCT+TGG | + | chr3.2:67771712-67771731 | MS.gene022431:CDS | 50.0% |
| ! | CCTGATACACCACTTGGTGA+TGG | + | chr3.2:67771856-67771875 | MS.gene022431:CDS | 50.0% |
| ! | CTTGCATGTGCTGCTGGTAT+TGG | + | chr3.2:67771553-67771572 | MS.gene022431:CDS | 50.0% |
| ! | GTGGGCCTTCAAGTTAACCA+AGG | + | chr3.2:67771592-67771611 | MS.gene022431:CDS | 50.0% |
| !! | GTGCAATCTGGTGTTGCAGT+AGG | - | chr3.2:67771223-67771242 | None:intergenic | 50.0% |
| ATGAGAGAGGGTGGTAGGAC+AGG | + | chr3.2:67772180-67772199 | MS.gene022431:CDS | 55.0% | |
| CCAAGCAAGCCCCAGTTTCT+GGG | - | chr3.2:67771681-67771700 | None:intergenic | 55.0% | |
| GAAGGACCTATAGCCCATGG+AGG | - | chr3.2:67772276-67772295 | None:intergenic | 55.0% | |
| GCCCAATAAGCCCAACACCT+TGG | - | chr3.2:67771612-67771631 | None:intergenic | 55.0% | |
| TGGGCCTGATCCGGCTAATT+TGG | + | chr3.2:67771627-67771646 | MS.gene022431:CDS | 55.0% | |
| TGGGCTTATTGGGCCTGATC+CGG | + | chr3.2:67771618-67771637 | MS.gene022431:CDS | 55.0% | |
| TTGTTGCAGTGGCCGACACT+TGG | - | chr3.2:67772533-67772552 | None:intergenic | 55.0% | |
| ! | ATGGGAGGAGGGAAAGCATG+TGG | + | chr3.2:67770968-67770987 | MS.gene022431:CDS | 55.0% |
| ! | CCAGAAACTGGGGCTTGCTT+GGG | + | chr3.2:67771679-67771698 | MS.gene022431:CDS | 55.0% |
| !! | TAAGCATTGGGCCCCATACC+TGG | - | chr3.2:67771379-67771398 | None:intergenic | 55.0% |
| CCCAAGCAAGCCCCAGTTTC+TGG | - | chr3.2:67771682-67771701 | None:intergenic | 60.0% | |
| CGAACAGTCTGCAACGGAGC+AGG | - | chr3.2:67771200-67771219 | None:intergenic | 60.0% | |
| CTGGGATGAGAGAGGGTGGT+AGG | + | chr3.2:67772175-67772194 | MS.gene022431:CDS | 60.0% | |
| TCAGCTGGGATGAGAGAGGG+TGG | + | chr3.2:67772171-67772190 | MS.gene022431:CDS | 60.0% | |
| ! | ACCATCCTAACCGGCTCAGG+CGG | + | chr3.2:67771172-67771191 | MS.gene022431:CDS | 60.0% |
| ! | CCCAGAAACTGGGGCTTGCT+TGG | + | chr3.2:67771678-67771697 | MS.gene022431:CDS | 60.0% |
| ! | GAAACTGGGGCTTGCTTGGG+TGG | + | chr3.2:67771682-67771701 | MS.gene022431:CDS | 60.0% |
| ! | GCAACCATCCTAACCGGCTC+AGG | + | chr3.2:67771169-67771188 | MS.gene022431:CDS | 60.0% |
| ! | GTGTCGGCCACTGCAACAAC+AGG | + | chr3.2:67772534-67772553 | MS.gene022431:CDS | 60.0% |
| AGGTTCCGCCTGAGCCGGTT+AGG | - | chr3.2:67771180-67771199 | None:intergenic | 65.0% | |
| TCCGCCTGAGCCGGTTAGGA+TGG | - | chr3.2:67771176-67771195 | None:intergenic | 65.0% | |
| GGAGCAGGTTCCGCCTGAGC+CGG | - | chr3.2:67771185-67771204 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 67770968 | 67772584 | 67770968 | ID=MS.gene022431 |
| chr3.2 | mRNA | 67770968 | 67772584 | 67770968 | ID=MS.gene022431.t1;Parent=MS.gene022431 |
| chr3.2 | exon | 67770968 | 67772584 | 67770968 | ID=MS.gene022431.t1.exon1;Parent=MS.gene022431.t1 |
| chr3.2 | CDS | 67770968 | 67772584 | 67770968 | ID=cds.MS.gene022431.t1;Parent=MS.gene022431.t1 |
| Gene Sequence |
| Protein sequence |
