Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022441.t1 | XP_003602073.2 | 93.2 | 296 | 20 | 0 | 1 | 296 | 1 | 296 | 2.00E-152 | 548.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022441.t1 | O64885 | 53.5 | 301 | 132 | 4 | 1 | 296 | 1 | 298 | 2.9e-75 | 283.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022441.t1 | G7J512 | 93.2 | 296 | 20 | 0 | 1 | 296 | 38 | 333 | 1.4e-152 | 548.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022441 | MS.gene018651 | PPI |
| MS.gene022441 | MS.gene36640 | PPI |
| MS.gene022441 | MS.gene023974 | PPI |
| MS.gene022441 | MS.gene96949 | PPI |
| MS.gene022441 | MS.gene85452 | PPI |
| MS.gene022441 | MS.gene23437 | PPI |
| MS.gene022441 | MS.gene035194 | PPI |
| MS.gene022441 | MS.gene058668 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022441.t1 | MTR_3g088850 | 95.946 | 296 | 12 | 0 | 1 | 296 | 1 | 296 | 0.0 | 587 |
| MS.gene022441.t1 | MTR_3g088850 | 95.946 | 296 | 12 | 0 | 1 | 296 | 38 | 333 | 0.0 | 587 |
| MS.gene022441.t1 | MTR_3g088850 | 96.599 | 294 | 10 | 0 | 1 | 294 | 64 | 357 | 0.0 | 586 |
| MS.gene022441.t1 | MTR_3g096970 | 88.851 | 296 | 30 | 1 | 1 | 296 | 1 | 293 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022441.t1 | AT2G44510 | 52.229 | 314 | 141 | 5 | 1 | 309 | 1 | 310 | 6.69e-94 | 281 |
| MS.gene022441.t1 | AT5G03830 | 47.967 | 246 | 85 | 7 | 1 | 244 | 1 | 205 | 2.29e-53 | 176 |
| MS.gene022441.t1 | AT5G03830 | 47.967 | 246 | 85 | 7 | 1 | 244 | 1 | 205 | 2.29e-53 | 176 |
| MS.gene022441.t1 | AT5G03830 | 47.967 | 246 | 85 | 7 | 1 | 244 | 1 | 205 | 2.29e-53 | 176 |
Find 86 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTCTTGGCTTGCTTTA+AGG | 0.096395 | 3.2:+67638303 | None:intergenic |
| CTCAAAGGATTCAATGGATT+TGG | 0.172099 | 3.2:+67639552 | None:intergenic |
| TTGCTACCGCTCTTAATTTA+TGG | 0.178946 | 3.2:-67639039 | MS.gene022441:CDS |
| TGATCAGTTGAGATTACTTT+TGG | 0.218935 | 3.2:-67638273 | MS.gene022441:CDS |
| TGGCTTTGCAGACTTGATTT+TGG | 0.241139 | 3.2:-67639125 | MS.gene022441:CDS |
| CCATGGAAATCATTTGGTTT+AGG | 0.265164 | 3.2:+67639199 | None:intergenic |
| TTAGGTCGTTGCTTCCTTCT+TGG | 0.271489 | 3.2:+67639652 | None:intergenic |
| CTCTTCCAAAGTGTGCTTGC+TGG | 0.277420 | 3.2:+67639392 | None:intergenic |
| CTCTTAATTTATGGAGGTAT+AGG | 0.323978 | 3.2:-67639030 | MS.gene022441:CDS |
| TCAGATGACTCGGACCCTTC+TGG | 0.356080 | 3.2:+67639366 | None:intergenic |
| AGCACATAACGTAGGTCTTC+TGG | 0.358688 | 3.2:-67638243 | MS.gene022441:CDS |
| TTAACTCCATGGAAATCATT+TGG | 0.362300 | 3.2:+67639193 | None:intergenic |
| GCTTAAACTGGAAGGAATTC+CGG | 0.375583 | 3.2:+67638001 | None:intergenic |
| TCTTAATTTATGGAGGTATA+GGG | 0.378376 | 3.2:-67639029 | MS.gene022441:intron |
| CGAGTAAGAGCGCGGGCAAA+AGG | 0.390292 | 3.2:+67639607 | None:intergenic |
| AATGTAATGGGCCAAGATTT+AGG | 0.400189 | 3.2:+67639634 | None:intergenic |
| GTATTATATAATGCTTAAAC+TGG | 0.402268 | 3.2:+67637989 | None:intergenic |
| TGCTTCCTTCTTGGCTTTCG+AGG | 0.418543 | 3.2:+67639661 | None:intergenic |
| CATATAAATGTGGTAAAAGC+TGG | 0.418657 | 3.2:+67638192 | None:intergenic |
| GGGTTTCTCAAAGGATTCAA+TGG | 0.435353 | 3.2:+67639546 | None:intergenic |
| CTTACCTTGATGTCGAAGAA+TGG | 0.441510 | 3.2:-67639156 | MS.gene022441:CDS |
| ATGGATTTGGAACGACGGTT+TGG | 0.441562 | 3.2:+67639565 | None:intergenic |
| TTACCTTGATGTCGAAGAAT+GGG | 0.448973 | 3.2:-67639155 | MS.gene022441:CDS |
| GGAAGCAACGACCTAAATCT+TGG | 0.457740 | 3.2:-67639645 | MS.gene022441:CDS |
| GATCAGCAACACCCTTCTCT+TGG | 0.470409 | 3.2:+67638291 | None:intergenic |
| GAGTAAGAGCGCGGGCAAAA+GGG | 0.470885 | 3.2:+67639608 | None:intergenic |
| GCAAAAGGGGAGAATGTAAT+GGG | 0.471618 | 3.2:+67639622 | None:intergenic |
| GGCAAAAGGGGAGAATGTAA+TGG | 0.485013 | 3.2:+67639621 | None:intergenic |
| TAACTTGCCTCATGAGGTGC+AGG | 0.500201 | 3.2:+67637599 | None:intergenic |
| CGGTTTGGCTTAGAAACAAA+GGG | 0.512973 | 3.2:+67639580 | None:intergenic |
| ATATAAATGTGGTAAAAGCT+GGG | 0.516100 | 3.2:+67638193 | None:intergenic |
| AACAGCCAACGAAGGACCTC+CGG | 0.519563 | 3.2:-67638020 | MS.gene022441:intron |
| AATCCCATTCTTCGACATCA+AGG | 0.523684 | 3.2:+67639152 | None:intergenic |
| TGGCTCCAGCAAGCACACTT+TGG | 0.524816 | 3.2:-67639397 | MS.gene022441:CDS |
| CAGAGCAACAGAAAAGAAAA+CGG | 0.530065 | 3.2:-67637802 | MS.gene022441:CDS |
| GAAGGGTCCGAGTCATCTGA+TGG | 0.530189 | 3.2:-67639363 | MS.gene022441:CDS |
| TCTCTTGGCTTGCTTTAAGG+AGG | 0.534343 | 3.2:+67638306 | None:intergenic |
| GTGGTAAAAGCTGGGGAGGA+AGG | 0.534852 | 3.2:+67638201 | None:intergenic |
| CCTTAAAGCAAGCCAAGAGA+AGG | 0.538235 | 3.2:-67638303 | MS.gene022441:CDS |
| ATAATTTCCAGTTAAGCTCA+TGG | 0.539419 | 3.2:-67637652 | MS.gene022441:intron |
| TCAGCAGCCTGCACCTCATG+AGG | 0.539473 | 3.2:-67637606 | MS.gene022441:CDS |
| AATACTTAGCAAAATTTACA+AGG | 0.539825 | 3.2:-67637971 | MS.gene022441:intron |
| CCTAAACCAAATGATTTCCA+TGG | 0.542817 | 3.2:-67639199 | MS.gene022441:CDS |
| CTACCGCTCTTAATTTATGG+AGG | 0.556422 | 3.2:-67639036 | MS.gene022441:CDS |
| TATATAATGCTTAAACTGGA+AGG | 0.560232 | 3.2:+67637993 | None:intergenic |
| GTAGAGGATGATGAGGACGA+AGG | 0.562570 | 3.2:-67639073 | MS.gene022441:CDS |
| GCAGCAAGGTCTTAACTCCA+TGG | 0.566822 | 3.2:+67639182 | None:intergenic |
| ATGTCTCACCTCATCTTCTG+TGG | 0.569078 | 3.2:+67638142 | None:intergenic |
| GGAAGGTGTGGGTTTCTCAA+AGG | 0.571208 | 3.2:+67639537 | None:intergenic |
| AAATGCCTCGAAAGCCAAGA+AGG | 0.572851 | 3.2:-67639666 | MS.gene022441:CDS |
| TACTGTAGGGACTGTTGTGA+AGG | 0.577451 | 3.2:-67639095 | MS.gene022441:CDS |
| TTACTAGTAGAGGAAGGTGT+GGG | 0.584179 | 3.2:+67639526 | None:intergenic |
| AGTAAGAGCGCGGGCAAAAG+GGG | 0.585680 | 3.2:+67639609 | None:intergenic |
| GAATTCCGGAGGTCCTTCGT+TGG | 0.585803 | 3.2:+67638015 | None:intergenic |
| AAAAGAGAATCATATAAATG+TGG | 0.590238 | 3.2:+67638182 | None:intergenic |
| AAAAGGTGTCTTACTAGTAG+AGG | 0.591028 | 3.2:+67639516 | None:intergenic |
| ACGGTTTGGCTTAGAAACAA+AGG | 0.596096 | 3.2:+67639579 | None:intergenic |
| AAGGGTCCGAGTCATCTGAT+GGG | 0.600422 | 3.2:-67639362 | MS.gene022441:CDS |
| GTCATGGGCCACAGAAGATG+AGG | 0.600540 | 3.2:-67638150 | MS.gene022441:intron |
| ATCATATAACTTGCCTCATG+AGG | 0.601021 | 3.2:+67637593 | None:intergenic |
| AAATGTGGTAAAAGCTGGGG+AGG | 0.603377 | 3.2:+67638197 | None:intergenic |
| AAACTCCCCATCAGATGACT+CGG | 0.618901 | 3.2:+67639356 | None:intergenic |
| CTTAAAGCAAGCCAAGAGAA+GGG | 0.622283 | 3.2:-67638302 | MS.gene022441:CDS |
| CTTACTAGTAGAGGAAGGTG+TGG | 0.627433 | 3.2:+67639525 | None:intergenic |
| GGTGTCTTACTAGTAGAGGA+AGG | 0.630445 | 3.2:+67639520 | None:intergenic |
| ACTTTGGAAGAGAGACCAGA+AGG | 0.630897 | 3.2:-67639381 | MS.gene022441:CDS |
| GGGCATACGAGTAAGAGCGC+GGG | 0.637156 | 3.2:+67639600 | None:intergenic |
| AAGATGTATTATGAAACTCA+AGG | 0.638398 | 3.2:-67638336 | MS.gene022441:CDS |
| TATAAATGTGGTAAAAGCTG+GGG | 0.644703 | 3.2:+67638194 | None:intergenic |
| ATCAAGGTAAGTTTGCAGCA+AGG | 0.645459 | 3.2:+67639168 | None:intergenic |
| TCTTCTGGTCTCACAACGTG+TGG | 0.646090 | 3.2:-67638228 | MS.gene022441:CDS |
| AGGGACTGTTGTGAAGGTAG+AGG | 0.647189 | 3.2:-67639089 | MS.gene022441:CDS |
| AGGGTCCGAGTCATCTGATG+GGG | 0.656952 | 3.2:-67639361 | MS.gene022441:CDS |
| GCAGGCTGCTGAGTGCGCAG+AGG | 0.665779 | 3.2:+67637617 | None:intergenic |
| CTTTGGAAGAGAGACCAGAA+GGG | 0.667517 | 3.2:-67639380 | MS.gene022441:CDS |
| AGGGCATACGAGTAAGAGCG+CGG | 0.669005 | 3.2:+67639599 | None:intergenic |
| ATTCAATGGATTTGGAACGA+CGG | 0.673927 | 3.2:+67639560 | None:intergenic |
| AGTGCGCAGAGGAAAACAGA+AGG | 0.677336 | 3.2:+67637628 | None:intergenic |
| GTCGAAGAATGGGATTTGAG+TGG | 0.692626 | 3.2:-67639145 | MS.gene022441:CDS |
| ACGGAGCGATGATAGCGAAG+AGG | 0.694142 | 3.2:-67637783 | MS.gene022441:CDS |
| AATAGTATACGTAAAGCCAG+AGG | 0.698407 | 3.2:-67637759 | MS.gene022441:CDS |
| ATACCTCCATAAATTAAGAG+CGG | 0.705253 | 3.2:+67639033 | None:intergenic |
| TGTGAAGGTAGAGGATGATG+AGG | 0.709733 | 3.2:-67639080 | MS.gene022441:CDS |
| TAAACTGGAAGGAATTCCGG+AGG | 0.716607 | 3.2:+67638004 | None:intergenic |
| GGGGAACAAGCACATAACGT+AGG | 0.723235 | 3.2:-67638251 | MS.gene022441:CDS |
| GCACACTTAACAGCCAACGA+AGG | 0.730403 | 3.2:-67638028 | MS.gene022441:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTATATATTACAATCA+AGG | + | chr3.2:67637785-67637804 | None:intergenic | 15.0% |
| !! | TTAAATTATAAAAGGGAAAA+AGG | + | chr3.2:67637234-67637253 | None:intergenic | 15.0% |
| !!! | ACTCTTTTTTAGTTAATTTA+TGG | - | chr3.2:67639214-67639233 | MS.gene022441:CDS | 15.0% |
| !!! | AGAAAATTGATTTTTTCTTT+CGG | - | chr3.2:67637905-67637924 | MS.gene022441:intron | 15.0% |
| !!! | TTATGTTTTATTTGTAAGTT+TGG | - | chr3.2:67638302-67638321 | MS.gene022441:CDS | 15.0% |
| !! | AAAAGAGAATCATATAAATG+TGG | + | chr3.2:67638551-67638570 | None:intergenic | 20.0% |
| !! | AAATTGAATAATAGCATAAG+AGG | + | chr3.2:67637409-67637428 | None:intergenic | 20.0% |
| !! | AATACTTAGCAAAATTTACA+AGG | - | chr3.2:67638759-67638778 | MS.gene022441:intron | 20.0% |
| !! | ATAAAGAGGAATAAACAAAA+AGG | + | chr3.2:67637856-67637875 | None:intergenic | 20.0% |
| !! | GACAAAATAATTCAAAATGA+TGG | + | chr3.2:67639034-67639053 | None:intergenic | 20.0% |
| !! | GTATTATATAATGCTTAAAC+TGG | + | chr3.2:67638744-67638763 | None:intergenic | 20.0% |
| !! | TAAAACATTACAAAAACAAG+TGG | + | chr3.2:67638872-67638891 | None:intergenic | 20.0% |
| !! | TAATAGAAACATCATGATAA+TGG | + | chr3.2:67639180-67639199 | None:intergenic | 20.0% |
| !! | TCTCAAATAAAAGATGTATT+TGG | + | chr3.2:67638330-67638349 | None:intergenic | 20.0% |
| !!! | ATAATATCTCTGTTGTTTAA+GGG | - | chr3.2:67637477-67637496 | MS.gene022441:intron | 20.0% |
| !!! | ATTGCTATTTTTAGCTTTTA+TGG | - | chr3.2:67638825-67638844 | MS.gene022441:intron | 20.0% |
| !!! | ATTTTGGTAATCAAGAAAAA+AGG | - | chr3.2:67638033-67638052 | MS.gene022441:intron | 20.0% |
| !!! | GTAGTATATGATTACTATTT+TGG | + | chr3.2:67638011-67638030 | None:intergenic | 20.0% |
| !!! | TAATCATATACTACGTATTT+TGG | - | chr3.2:67638017-67638036 | MS.gene022441:CDS | 20.0% |
| !!! | TATAATATCTCTGTTGTTTA+AGG | - | chr3.2:67637476-67637495 | MS.gene022441:intron | 20.0% |
| ! | AAGATGTATTATGAAACTCA+AGG | - | chr3.2:67638394-67638413 | MS.gene022441:intron | 25.0% |
| ! | AAGCTAAAAATAGCAATAAG+AGG | + | chr3.2:67638822-67638841 | None:intergenic | 25.0% |
| ! | ATATAAATGTGGTAAAAGCT+GGG | + | chr3.2:67638540-67638559 | None:intergenic | 25.0% |
| ! | CAAAAAAGTAAAGGAAAAAG+AGG | + | chr3.2:67637759-67637778 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAGGAATTTGTA+TGG | - | chr3.2:67638044-67638063 | MS.gene022441:intron | 25.0% |
| ! | TAACTAGTAAAATTGCACAA+GGG | + | chr3.2:67637962-67637981 | None:intergenic | 25.0% |
| ! | TAAGAGGACAATAAATAGAA+AGG | + | chr3.2:67638806-67638825 | None:intergenic | 25.0% |
| ! | TATATAATGCTTAAACTGGA+AGG | + | chr3.2:67638740-67638759 | None:intergenic | 25.0% |
| ! | TGCAAAGTGTAAAACATAAA+AGG | + | chr3.2:67637284-67637303 | None:intergenic | 25.0% |
| ! | TGTTTATTCCTCTTTATCTT+TGG | - | chr3.2:67637859-67637878 | MS.gene022441:intron | 25.0% |
| ! | TTAGTAGATAAGATAGATGA+CGG | + | chr3.2:67638263-67638282 | None:intergenic | 25.0% |
| ! | TTGCTCCTAGAAAAATTATT+AGG | + | chr3.2:67638375-67638394 | None:intergenic | 25.0% |
| !! | AATGATTGTCTGTTTTACTT+TGG | - | chr3.2:67639464-67639483 | MS.gene022441:intron | 25.0% |
| !! | AGCTTAACTGGAAATTATTT+TGG | + | chr3.2:67639076-67639095 | None:intergenic | 25.0% |
| !! | ATTTGGTTTAGGATCAAAAA+AGG | + | chr3.2:67637523-67637542 | None:intergenic | 25.0% |
| !! | GTAATGTTTTACTTCATTTC+TGG | - | chr3.2:67638881-67638900 | MS.gene022441:intron | 25.0% |
| !! | TCTTAATTTATGGAGGTATA+GGG | - | chr3.2:67637701-67637720 | MS.gene022441:intron | 25.0% |
| !! | TTACTTATTTCTCAAACCAA+CGG | + | chr3.2:67639271-67639290 | None:intergenic | 25.0% |
| !! | TTGAGCCTAATAATTTTTCT+AGG | - | chr3.2:67638367-67638386 | MS.gene022441:intron | 25.0% |
| !!! | AAATTTTGTTTATGACTGAC+TGG | - | chr3.2:67638158-67638177 | MS.gene022441:CDS | 25.0% |
| !!! | ATATGATTACTATTTTGGTG+AGG | + | chr3.2:67638006-67638025 | None:intergenic | 25.0% |
| !!! | CTCTTTTTCCTTTACTTTTT+TGG | - | chr3.2:67637757-67637776 | MS.gene022441:CDS | 25.0% |
| !!! | TCTTTTTAATGAAGTGTCAT+GGG | - | chr3.2:67638565-67638584 | MS.gene022441:intron | 25.0% |
| AAAAAAGAGTAACTTTCAGC+AGG | + | chr3.2:67639204-67639223 | None:intergenic | 30.0% | |
| AAAATTGCACAAGGGTAAAA+TGG | + | chr3.2:67637954-67637973 | None:intergenic | 30.0% | |
| ACTATGCAATAGTTATACGT+CGG | - | chr3.2:67639514-67639533 | MS.gene022441:intron | 30.0% | |
| ATAATTTCCAGTTAAGCTCA+TGG | - | chr3.2:67639078-67639097 | MS.gene022441:CDS | 30.0% | |
| ATACCTCCATAAATTAAGAG+CGG | + | chr3.2:67637700-67637719 | None:intergenic | 30.0% | |
| CAACGTTTCTTTAATGTCTT+TGG | - | chr3.2:67638105-67638124 | MS.gene022441:intron | 30.0% | |
| CATATAAATGTGGTAAAAGC+TGG | + | chr3.2:67638541-67638560 | None:intergenic | 30.0% | |
| CTAACTAGTAAAATTGCACA+AGG | + | chr3.2:67637963-67637982 | None:intergenic | 30.0% | |
| TATAAATGTGGTAAAAGCTG+GGG | + | chr3.2:67638539-67638558 | None:intergenic | 30.0% | |
| TATAATAACACAAGCGATCA+TGG | + | chr3.2:67637432-67637451 | None:intergenic | 30.0% | |
| TTAACTCCATGGAAATCATT+TGG | + | chr3.2:67637540-67637559 | None:intergenic | 30.0% | |
| TTAGGCTCAATTTAGATTAG+CGG | + | chr3.2:67638357-67638376 | None:intergenic | 30.0% | |
| TTATTCCTCTTTATCTTTGG+CGG | - | chr3.2:67637862-67637881 | MS.gene022441:intron | 30.0% | |
| ! | AATGTCTTTGGTTCATTGAA+TGG | - | chr3.2:67638117-67638136 | MS.gene022441:intron | 30.0% |
| ! | CTCTTAATTTATGGAGGTAT+AGG | - | chr3.2:67637700-67637719 | MS.gene022441:intron | 30.0% |
| ! | TGATCAGTTGAGATTACTTT+TGG | - | chr3.2:67638457-67638476 | MS.gene022441:intron | 30.0% |
| !! | ATCAGTTGAGATTACTTTTG+GGG | - | chr3.2:67638459-67638478 | MS.gene022441:intron | 30.0% |
| !! | CTCTTTTTAATGAAGTGTCA+TGG | - | chr3.2:67638564-67638583 | MS.gene022441:intron | 30.0% |
| !! | GATCAGTTGAGATTACTTTT+GGG | - | chr3.2:67638458-67638477 | MS.gene022441:intron | 30.0% |
| AATAGTATACGTAAAGCCAG+AGG | - | chr3.2:67638971-67638990 | MS.gene022441:intron | 35.0% | |
| ATACATAGATAGACATCCGT+TGG | - | chr3.2:67639252-67639271 | MS.gene022441:intron | 35.0% | |
| ATGGTTTCTAATCATGTCAC+AGG | + | chr3.2:67639591-67639610 | None:intergenic | 35.0% | |
| CAAAAAAGGCAAAATCTGCT+TGG | + | chr3.2:67637509-67637528 | None:intergenic | 35.0% | |
| CAGAGCAACAGAAAAGAAAA+CGG | - | chr3.2:67638928-67638947 | MS.gene022441:intron | 35.0% | |
| CCTAAACCAAATGATTTCCA+TGG | - | chr3.2:67637531-67637550 | MS.gene022441:intron | 35.0% | |
| GGTTGCGGTGTTTATATAAA+TGG | - | chr3.2:67639341-67639360 | MS.gene022441:intron | 35.0% | |
| TAATTCAAAATGATGGCACC+AGG | + | chr3.2:67639027-67639046 | None:intergenic | 35.0% | |
| TATTCCTCTTTATCTTTGGC+GGG | - | chr3.2:67637863-67637882 | MS.gene022441:intron | 35.0% | |
| TCGTGAAAAATTTCATCCTC+TGG | + | chr3.2:67638990-67639009 | None:intergenic | 35.0% | |
| TTACCTTGATGTCGAAGAAT+GGG | - | chr3.2:67637575-67637594 | MS.gene022441:intron | 35.0% | |
| TTGCTACCGCTCTTAATTTA+TGG | - | chr3.2:67637691-67637710 | MS.gene022441:intron | 35.0% | |
| ! | ACGAGGTATTATTAGTATCC+TGG | - | chr3.2:67639006-67639025 | MS.gene022441:intron | 35.0% |
| ! | AGACATTGATAGCATCAGAT+GGG | - | chr3.2:67638605-67638624 | MS.gene022441:intron | 35.0% |
| ! | AGAGGATGAAATTTTTCACG+AGG | - | chr3.2:67638989-67639008 | MS.gene022441:intron | 35.0% |
| ! | ATCATATAACTTGCCTCATG+AGG | + | chr3.2:67639140-67639159 | None:intergenic | 35.0% |
| ! | ATGTTTTTCTGTTTGACTGC+TGG | - | chr3.2:67638641-67638660 | MS.gene022441:intron | 35.0% |
| ! | ATTCAATGGATTTGGAACGA+CGG | + | chr3.2:67637173-67637192 | None:intergenic | 35.0% |
| ! | CCATGGAAATCATTTGGTTT+AGG | + | chr3.2:67637534-67637553 | None:intergenic | 35.0% |
| ! | CTCAAAGGATTCAATGGATT+TGG | + | chr3.2:67637181-67637200 | None:intergenic | 35.0% |
| ! | GAGCTTCTAAAAAAGTTGAG+GGG | + | chr3.2:67638241-67638260 | None:intergenic | 35.0% |
| ! | GGAGCTTCTAAAAAAGTTGA+GGG | + | chr3.2:67638242-67638261 | None:intergenic | 35.0% |
| ! | TCAAGGCACCAAAAAAGTAA+AGG | + | chr3.2:67637768-67637787 | None:intergenic | 35.0% |
| ! | TTCTTTTGAACTTTGCCTTG+TGG | - | chr3.2:67639308-67639327 | MS.gene022441:intron | 35.0% |
| !! | AAAAGGTGTCTTACTAGTAG+AGG | + | chr3.2:67637217-67637236 | None:intergenic | 35.0% |
| !! | AATGTAATGGGCCAAGATTT+AGG | + | chr3.2:67637099-67637118 | None:intergenic | 35.0% |
| !! | AGTTAGCAATTTGTTGCAGA+AGG | - | chr3.2:67637977-67637996 | MS.gene022441:CDS | 35.0% |
| !! | TCAGTTGAGATTACTTTTGG+GGG | - | chr3.2:67638460-67638479 | MS.gene022441:intron | 35.0% |
| !!! | ATTTTGGAACAGACTACTGT+AGG | - | chr3.2:67637621-67637640 | MS.gene022441:CDS | 35.0% |
| !!! | TGGTGGACTAATTTTCACTT+TGG | - | chr3.2:67638661-67638680 | MS.gene022441:intron | 35.0% |
| !!! | TTTTGGAACAGACTACTGTA+GGG | - | chr3.2:67637622-67637641 | MS.gene022441:CDS | 35.0% |
| AATCCCATTCTTCGACATCA+AGG | + | chr3.2:67637581-67637600 | None:intergenic | 40.0% | |
| AGTAAGTCAGTGTGATGTCA+AGG | + | chr3.2:67637827-67637846 | None:intergenic | 40.0% | |
| ATCAAGGTAAGTTTGCAGCA+AGG | + | chr3.2:67637565-67637584 | None:intergenic | 40.0% | |
| CATGTGCAGGTTATCAGTAA+TGG | + | chr3.2:67639610-67639629 | None:intergenic | 40.0% | |
| CTACCGCTCTTAATTTATGG+AGG | - | chr3.2:67637694-67637713 | MS.gene022441:intron | 40.0% | |
| CTTAAAGCAAGCCAAGAGAA+GGG | - | chr3.2:67638428-67638447 | MS.gene022441:intron | 40.0% | |
| CTTACCTTGATGTCGAAGAA+TGG | - | chr3.2:67637574-67637593 | MS.gene022441:intron | 40.0% | |
| GCAAAAGGGGAGAATGTAAT+GGG | + | chr3.2:67637111-67637130 | None:intergenic | 40.0% | |
| GCTTAAACTGGAAGGAATTC+CGG | + | chr3.2:67638732-67638751 | None:intergenic | 40.0% | |
| GGGTTTCTCAAAGGATTCAA+TGG | + | chr3.2:67637187-67637206 | None:intergenic | 40.0% | |
| TACTAGCTGTTAGTGATAGC+TGG | - | chr3.2:67639542-67639561 | MS.gene022441:CDS | 40.0% | |
| TAGGAAGTGGGTCAGAAATA+GGG | + | chr3.2:67637308-67637327 | None:intergenic | 40.0% | |
| TTGCCTTGTGGTCTATTTGT+GGG | - | chr3.2:67639320-67639339 | MS.gene022441:intron | 40.0% | |
| TTTGCCTTGTGGTCTATTTG+TGG | - | chr3.2:67639319-67639338 | MS.gene022441:intron | 40.0% | |
| ! | ACGGTTTGGCTTAGAAACAA+AGG | + | chr3.2:67637154-67637173 | None:intergenic | 40.0% |
| ! | CGGAGCTTCTAAAAAAGTTG+AGG | + | chr3.2:67638243-67638262 | None:intergenic | 40.0% |
| ! | CGGTTTGGCTTAGAAACAAA+GGG | + | chr3.2:67637153-67637172 | None:intergenic | 40.0% |
| ! | GAGACATTGATAGCATCAGA+TGG | - | chr3.2:67638604-67638623 | MS.gene022441:intron | 40.0% |
| ! | GTCTTTGGTTCATTGAATGG+TGG | - | chr3.2:67638120-67638139 | MS.gene022441:intron | 40.0% |
| ! | TTACTAGTAGAGGAAGGTGT+GGG | + | chr3.2:67637207-67637226 | None:intergenic | 40.0% |
| ! | TTTTTCTGTTTGACTGCTGG+TGG | - | chr3.2:67638644-67638663 | MS.gene022441:intron | 40.0% |
| !! | TGGCTTTGCAGACTTGATTT+TGG | - | chr3.2:67637605-67637624 | MS.gene022441:CDS | 40.0% |
| AAACTCCCCATCAGATGACT+CGG | + | chr3.2:67637377-67637396 | None:intergenic | 45.0% | |
| AAATGTGGTAAAAGCTGGGG+AGG | + | chr3.2:67638536-67638555 | None:intergenic | 45.0% | |
| AGAAGGACCATGAGCTTAAC+TGG | + | chr3.2:67639088-67639107 | None:intergenic | 45.0% | |
| AGCACATAACGTAGGTCTTC+TGG | - | chr3.2:67638487-67638506 | MS.gene022441:intron | 45.0% | |
| ATGTCTCACCTCATCTTCTG+TGG | + | chr3.2:67638591-67638610 | None:intergenic | 45.0% | |
| CAACCCACAAATAGACCACA+AGG | + | chr3.2:67639326-67639345 | None:intergenic | 45.0% | |
| CCTTAAAGCAAGCCAAGAGA+AGG | - | chr3.2:67638427-67638446 | MS.gene022441:intron | 45.0% | |
| CTAATCCTGCATACATGTGC+AGG | + | chr3.2:67639623-67639642 | None:intergenic | 45.0% | |
| CTAGGAAGTGGGTCAGAAAT+AGG | + | chr3.2:67637309-67637328 | None:intergenic | 45.0% | |
| CTTACTAGTAGAGGAAGGTG+TGG | + | chr3.2:67637208-67637227 | None:intergenic | 45.0% | |
| GAGGTATAGGGTAAGTCACA+TGG | - | chr3.2:67637713-67637732 | MS.gene022441:intron | 45.0% | |
| GATAACCTGCACATGTATGC+AGG | - | chr3.2:67639615-67639634 | MS.gene022441:CDS | 45.0% | |
| GATACCCGCCAAAGATAAAG+AGG | + | chr3.2:67637870-67637889 | None:intergenic | 45.0% | |
| GGAAGCAACGACCTAAATCT+TGG | - | chr3.2:67637085-67637104 | MS.gene022441:CDS | 45.0% | |
| GGCAAAAGGGGAGAATGTAA+TGG | + | chr3.2:67637112-67637131 | None:intergenic | 45.0% | |
| GGTGTCTTACTAGTAGAGGA+AGG | + | chr3.2:67637213-67637232 | None:intergenic | 45.0% | |
| GTCGAAGAATGGGATTTGAG+TGG | - | chr3.2:67637585-67637604 | MS.gene022441:intron | 45.0% | |
| GTGATGTCAAGGTGATCACA+CGG | + | chr3.2:67637816-67637835 | None:intergenic | 45.0% | |
| TAAACTGGAAGGAATTCCGG+AGG | + | chr3.2:67638729-67638748 | None:intergenic | 45.0% | |
| TACTGTAGGGACTGTTGTGA+AGG | - | chr3.2:67637635-67637654 | MS.gene022441:CDS | 45.0% | |
| TAGCTGTTAGTGATAGCTGG+AGG | - | chr3.2:67639545-67639564 | MS.gene022441:CDS | 45.0% | |
| TGATAGCATCAGATGGGTGA+GGG | - | chr3.2:67638611-67638630 | MS.gene022441:intron | 45.0% | |
| TGTGAAGGTAGAGGATGATG+AGG | - | chr3.2:67637650-67637669 | MS.gene022441:intron | 45.0% | |
| TTAGGTCGTTGCTTCCTTCT+TGG | + | chr3.2:67637081-67637100 | None:intergenic | 45.0% | |
| ! | ACTTTGGAAGAGAGACCAGA+AGG | - | chr3.2:67637349-67637368 | MS.gene022441:intron | 45.0% |
| ! | ATGGATTTGGAACGACGGTT+TGG | + | chr3.2:67637168-67637187 | None:intergenic | 45.0% |
| ! | CTTTGGAAGAGAGACCAGAA+GGG | - | chr3.2:67637350-67637369 | MS.gene022441:intron | 45.0% |
| ! | TGTGGTCTATTTGTGGGTTG+CGG | - | chr3.2:67639326-67639345 | MS.gene022441:intron | 45.0% |
| ! | TTGATAGCATCAGATGGGTG+AGG | - | chr3.2:67638610-67638629 | MS.gene022441:intron | 45.0% |
| !! | CCTTCTCTTGGCTTGCTTTA+AGG | + | chr3.2:67638430-67638449 | None:intergenic | 45.0% |
| !! | CTATTTCTGACCCACTTCCT+AGG | - | chr3.2:67637307-67637326 | MS.gene022441:intron | 45.0% |
| !! | TCTCTTGGCTTGCTTTAAGG+AGG | + | chr3.2:67638427-67638446 | None:intergenic | 45.0% |
| !! | ATAAACATTTAAATTATAAA+AGG | + | chr3.2:67637242-67637261 | None:intergenic | 5.0% |
| !! | TAAACATTTAAATTATAAAA+GGG | + | chr3.2:67637241-67637260 | None:intergenic | 5.0% |
| AAGGGTCCGAGTCATCTGAT+GGG | - | chr3.2:67637368-67637387 | MS.gene022441:intron | 50.0% | |
| AGGGACTGTTGTGAAGGTAG+AGG | - | chr3.2:67637641-67637660 | MS.gene022441:CDS | 50.0% | |
| AGTGCGCAGAGGAAAACAGA+AGG | + | chr3.2:67639105-67639124 | None:intergenic | 50.0% | |
| CTCTTCCAAAGTGTGCTTGC+TGG | + | chr3.2:67637341-67637360 | None:intergenic | 50.0% | |
| CTGACCCACTTCCTAGGTAA+TGG | - | chr3.2:67637313-67637332 | MS.gene022441:intron | 50.0% | |
| GATCAGCAACACCCTTCTCT+TGG | + | chr3.2:67638442-67638461 | None:intergenic | 50.0% | |
| GCACACTTAACAGCCAACGA+AGG | - | chr3.2:67638702-67638721 | MS.gene022441:intron | 50.0% | |
| GCAGCAAGGTCTTAACTCCA+TGG | + | chr3.2:67637551-67637570 | None:intergenic | 50.0% | |
| GGAGCCATTACCTAGGAAGT+GGG | + | chr3.2:67637320-67637339 | None:intergenic | 50.0% | |
| GGGGAACAAGCACATAACGT+AGG | - | chr3.2:67638479-67638498 | MS.gene022441:intron | 50.0% | |
| GTAGAGGATGATGAGGACGA+AGG | - | chr3.2:67637657-67637676 | MS.gene022441:intron | 50.0% | |
| TCTTCTGGTCTCACAACGTG+TGG | - | chr3.2:67638502-67638521 | MS.gene022441:intron | 50.0% | |
| TGGAGCCATTACCTAGGAAG+TGG | + | chr3.2:67637321-67637340 | None:intergenic | 50.0% | |
| ! | GGAAGGTGTGGGTTTCTCAA+AGG | + | chr3.2:67637196-67637215 | None:intergenic | 50.0% |
| ! | TAACTTGCCTCATGAGGTGC+AGG | + | chr3.2:67639134-67639153 | None:intergenic | 50.0% |
| ! | TGCTTCCTTCTTGGCTTTCG+AGG | + | chr3.2:67637072-67637091 | None:intergenic | 50.0% |
| AACAGCCAACGAAGGACCTC+CGG | - | chr3.2:67638710-67638729 | MS.gene022441:intron | 55.0% | |
| AGGGCATACGAGTAAGAGCG+CGG | + | chr3.2:67637134-67637153 | None:intergenic | 55.0% | |
| AGGGTCCGAGTCATCTGATG+GGG | - | chr3.2:67637369-67637388 | MS.gene022441:intron | 55.0% | |
| GAAGGGTCCGAGTCATCTGA+TGG | - | chr3.2:67637367-67637386 | MS.gene022441:intron | 55.0% | |
| GAATTCCGGAGGTCCTTCGT+TGG | + | chr3.2:67638718-67638737 | None:intergenic | 55.0% | |
| GTCATGGGCCACAGAAGATG+AGG | - | chr3.2:67638580-67638599 | MS.gene022441:intron | 55.0% | |
| GTGGTAAAAGCTGGGGAGGA+AGG | + | chr3.2:67638532-67638551 | None:intergenic | 55.0% | |
| TGGCTCCAGCAAGCACACTT+TGG | - | chr3.2:67637333-67637352 | MS.gene022441:intron | 55.0% | |
| ! | ACGGAGCGATGATAGCGAAG+AGG | - | chr3.2:67638947-67638966 | MS.gene022441:intron | 55.0% |
| ! | AGTAAGAGCGCGGGCAAAAG+GGG | + | chr3.2:67637124-67637143 | None:intergenic | 55.0% |
| ! | GAGTAAGAGCGCGGGCAAAA+GGG | + | chr3.2:67637125-67637144 | None:intergenic | 55.0% |
| ! | GCTTGCTGGAGCCATTACCT+AGG | + | chr3.2:67637327-67637346 | None:intergenic | 55.0% |
| ! | TCAGATGACTCGGACCCTTC+TGG | + | chr3.2:67637367-67637386 | None:intergenic | 55.0% |
| TCAGCAGCCTGCACCTCATG+AGG | - | chr3.2:67639124-67639143 | MS.gene022441:CDS | 60.0% | |
| ! | CGAGTAAGAGCGCGGGCAAA+AGG | + | chr3.2:67637126-67637145 | None:intergenic | 60.0% |
| ! | GGGCATACGAGTAAGAGCGC+GGG | + | chr3.2:67637133-67637152 | None:intergenic | 60.0% |
| GCAGGCTGCTGAGTGCGCAG+AGG | + | chr3.2:67639116-67639135 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 67637066 | 67639686 | 67637066 | ID=MS.gene022441 |
| chr3.2 | mRNA | 67637066 | 67639686 | 67637066 | ID=MS.gene022441.t1;Parent=MS.gene022441 |
| chr3.2 | exon | 67639530 | 67639686 | 67639530 | ID=MS.gene022441.t1.exon1;Parent=MS.gene022441.t1 |
| chr3.2 | CDS | 67639530 | 67639686 | 67639530 | ID=cds.MS.gene022441.t1;Parent=MS.gene022441.t1 |
| chr3.2 | exon | 67639353 | 67639423 | 67639353 | ID=MS.gene022441.t1.exon2;Parent=MS.gene022441.t1 |
| chr3.2 | CDS | 67639353 | 67639423 | 67639353 | ID=cds.MS.gene022441.t1;Parent=MS.gene022441.t1 |
| chr3.2 | exon | 67639030 | 67639254 | 67639030 | ID=MS.gene022441.t1.exon3;Parent=MS.gene022441.t1 |
| chr3.2 | CDS | 67639030 | 67639254 | 67639030 | ID=cds.MS.gene022441.t1;Parent=MS.gene022441.t1 |
| chr3.2 | exon | 67638151 | 67638363 | 67638151 | ID=MS.gene022441.t1.exon4;Parent=MS.gene022441.t1 |
| chr3.2 | CDS | 67638151 | 67638363 | 67638151 | ID=cds.MS.gene022441.t1;Parent=MS.gene022441.t1 |
| chr3.2 | exon | 67637972 | 67638037 | 67637972 | ID=MS.gene022441.t1.exon5;Parent=MS.gene022441.t1 |
| chr3.2 | CDS | 67637972 | 67638037 | 67637972 | ID=cds.MS.gene022441.t1;Parent=MS.gene022441.t1 |
| chr3.2 | exon | 67637742 | 67637834 | 67637742 | ID=MS.gene022441.t1.exon6;Parent=MS.gene022441.t1 |
| chr3.2 | CDS | 67637742 | 67637834 | 67637742 | ID=cds.MS.gene022441.t1;Parent=MS.gene022441.t1 |
| chr3.2 | exon | 67637603 | 67637663 | 67637603 | ID=MS.gene022441.t1.exon7;Parent=MS.gene022441.t1 |
| chr3.2 | CDS | 67637603 | 67637663 | 67637603 | ID=cds.MS.gene022441.t1;Parent=MS.gene022441.t1 |
| chr3.2 | exon | 67637066 | 67637115 | 67637066 | ID=MS.gene022441.t1.exon8;Parent=MS.gene022441.t1 |
| chr3.2 | CDS | 67637066 | 67637115 | 67637066 | ID=cds.MS.gene022441.t1;Parent=MS.gene022441.t1 |
| Gene Sequence |
| Protein sequence |
