Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022840.t1 | XP_003626964.1 | 96.2 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 4.90E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022840.t1 | Q9SSK5 | 44.5 | 155 | 84 | 1 | 2 | 154 | 4 | 158 | 5.0e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022840.t1 | G7LFU4 | 96.2 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 3.5e-83 | 317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68338 | MS.gene022840 | PPI |
| MS.gene022840 | MS.gene43899 | PPI |
| MS.gene027577 | MS.gene022840 | PPI |
| MS.gene45085 | MS.gene022840 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022840.t1 | MTR_8g012550 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 1.17e-111 | 313 |
| MS.gene022840.t1 | MTR_8g045570 | 36.552 | 145 | 89 | 3 | 8 | 150 | 6 | 149 | 3.03e-29 | 105 |
| MS.gene022840.t1 | MTR_1g030810 | 33.974 | 156 | 97 | 4 | 1 | 153 | 1 | 153 | 2.49e-27 | 100 |
| MS.gene022840.t1 | MTR_1g030820 | 35.256 | 156 | 95 | 4 | 1 | 153 | 1 | 153 | 3.56e-26 | 97.1 |
| MS.gene022840.t1 | MTR_1g031640 | 35.664 | 143 | 86 | 3 | 9 | 150 | 7 | 144 | 3.73e-25 | 94.4 |
| MS.gene022840.t1 | MTR_8g045490 | 33.562 | 146 | 94 | 3 | 8 | 151 | 6 | 150 | 4.51e-25 | 94.4 |
| MS.gene022840.t1 | MTR_1g030840 | 35.625 | 160 | 94 | 3 | 1 | 153 | 1 | 158 | 1.06e-24 | 93.6 |
| MS.gene022840.t1 | MTR_8g045400 | 35.172 | 145 | 90 | 4 | 8 | 150 | 6 | 148 | 2.20e-24 | 92.8 |
| MS.gene022840.t1 | MTR_8g045695 | 32.000 | 150 | 98 | 4 | 8 | 155 | 6 | 153 | 8.47e-24 | 91.3 |
| MS.gene022840.t1 | MTR_8g045300 | 31.333 | 150 | 100 | 3 | 8 | 155 | 6 | 154 | 1.10e-23 | 90.9 |
| MS.gene022840.t1 | MTR_8g045735 | 32.667 | 150 | 97 | 4 | 8 | 155 | 6 | 153 | 1.77e-23 | 90.5 |
| MS.gene022840.t1 | MTR_8g045665 | 32.877 | 146 | 94 | 4 | 8 | 151 | 6 | 149 | 2.68e-23 | 89.7 |
| MS.gene022840.t1 | MTR_8g045520 | 32.000 | 150 | 99 | 3 | 8 | 155 | 6 | 154 | 5.72e-23 | 89.0 |
| MS.gene022840.t1 | MTR_8g045560 | 32.192 | 146 | 95 | 4 | 8 | 151 | 6 | 149 | 1.38e-22 | 88.2 |
| MS.gene022840.t1 | MTR_8g045555 | 30.345 | 145 | 98 | 3 | 8 | 150 | 6 | 149 | 1.45e-22 | 87.8 |
| MS.gene022840.t1 | MTR_8g045640 | 31.757 | 148 | 97 | 4 | 6 | 151 | 4 | 149 | 2.37e-21 | 84.7 |
| MS.gene022840.t1 | MTR_5g035010 | 29.139 | 151 | 106 | 1 | 1 | 150 | 1 | 151 | 1.84e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022840.t1 | AT1G70890 | 44.516 | 155 | 84 | 1 | 2 | 154 | 4 | 158 | 4.74e-46 | 147 |
| MS.gene022840.t1 | AT1G70830 | 43.871 | 155 | 85 | 1 | 2 | 154 | 19 | 173 | 9.74e-44 | 142 |
| MS.gene022840.t1 | AT1G70840 | 44.516 | 155 | 84 | 1 | 2 | 154 | 17 | 171 | 1.43e-43 | 142 |
| MS.gene022840.t1 | AT1G70830 | 43.312 | 157 | 87 | 1 | 2 | 156 | 19 | 175 | 1.72e-43 | 142 |
| MS.gene022840.t1 | AT1G70830 | 43.312 | 157 | 87 | 1 | 2 | 156 | 19 | 175 | 6.46e-43 | 142 |
| MS.gene022840.t1 | AT1G70830 | 45.161 | 62 | 34 | 0 | 4 | 65 | 183 | 244 | 2.16e-14 | 68.6 |
| MS.gene022840.t1 | AT1G70830 | 43.312 | 157 | 87 | 1 | 2 | 156 | 19 | 175 | 5.16e-42 | 142 |
| MS.gene022840.t1 | AT1G70830 | 42.484 | 153 | 86 | 1 | 4 | 154 | 183 | 335 | 4.39e-39 | 135 |
| MS.gene022840.t1 | AT1G70850 | 43.709 | 151 | 83 | 1 | 2 | 150 | 6 | 156 | 2.73e-41 | 138 |
| MS.gene022840.t1 | AT1G70850 | 46.939 | 49 | 26 | 0 | 15 | 63 | 175 | 223 | 4.86e-11 | 59.3 |
| MS.gene022840.t1 | AT1G70850 | 43.709 | 151 | 83 | 1 | 2 | 150 | 6 | 156 | 1.24e-40 | 139 |
| MS.gene022840.t1 | AT1G70850 | 45.775 | 142 | 75 | 1 | 15 | 154 | 175 | 316 | 4.26e-40 | 137 |
| MS.gene022840.t1 | AT1G70850 | 43.709 | 151 | 83 | 1 | 2 | 150 | 6 | 156 | 1.24e-40 | 139 |
| MS.gene022840.t1 | AT1G70850 | 45.775 | 142 | 75 | 1 | 15 | 154 | 175 | 316 | 4.26e-40 | 137 |
| MS.gene022840.t1 | AT1G70830 | 42.484 | 153 | 86 | 1 | 4 | 154 | 136 | 288 | 1.37e-39 | 135 |
| MS.gene022840.t1 | AT1G70830 | 39.796 | 98 | 57 | 1 | 61 | 156 | 31 | 128 | 6.06e-18 | 78.6 |
| MS.gene022840.t1 | AT5G28010 | 40.260 | 154 | 90 | 1 | 3 | 154 | 13 | 166 | 2.63e-39 | 131 |
| MS.gene022840.t1 | AT5G28010 | 40.260 | 154 | 90 | 1 | 3 | 154 | 13 | 166 | 2.63e-39 | 131 |
| MS.gene022840.t1 | AT1G70880 | 40.645 | 155 | 90 | 1 | 2 | 154 | 5 | 159 | 8.35e-39 | 129 |
| MS.gene022840.t1 | AT5G28000 | 37.584 | 149 | 91 | 1 | 8 | 154 | 16 | 164 | 1.61e-32 | 113 |
| MS.gene022840.t1 | AT1G23130 | 34.459 | 148 | 94 | 2 | 8 | 153 | 13 | 159 | 6.00e-29 | 104 |
| MS.gene022840.t1 | AT1G35260 | 39.073 | 151 | 87 | 3 | 7 | 154 | 4 | 152 | 1.72e-27 | 100 |
| MS.gene022840.t1 | AT1G14930 | 31.126 | 151 | 100 | 3 | 1 | 150 | 1 | 148 | 8.09e-20 | 80.9 |
| MS.gene022840.t1 | AT1G35310 | 34.043 | 141 | 89 | 3 | 15 | 153 | 12 | 150 | 2.90e-19 | 79.3 |
| MS.gene022840.t1 | AT1G14940 | 31.429 | 140 | 94 | 2 | 12 | 150 | 10 | 148 | 2.99e-19 | 79.3 |
| MS.gene022840.t1 | AT1G14960 | 28.571 | 140 | 98 | 2 | 12 | 150 | 10 | 148 | 6.09e-19 | 78.6 |
| MS.gene022840.t1 | AT1G24020 | 28.477 | 151 | 105 | 2 | 1 | 150 | 1 | 149 | 9.32e-18 | 75.5 |
| MS.gene022840.t1 | AT1G24020 | 28.477 | 151 | 105 | 2 | 1 | 150 | 1 | 149 | 9.32e-18 | 75.5 |
| MS.gene022840.t1 | AT2G01520 | 29.139 | 151 | 103 | 3 | 1 | 150 | 1 | 148 | 1.56e-17 | 74.7 |
| MS.gene022840.t1 | AT1G30990 | 28.571 | 140 | 97 | 3 | 12 | 150 | 10 | 147 | 1.84e-17 | 74.7 |
| MS.gene022840.t1 | AT4G14060 | 29.139 | 151 | 103 | 3 | 1 | 150 | 1 | 148 | 1.98e-17 | 74.7 |
| MS.gene022840.t1 | AT1G23120 | 28.788 | 132 | 88 | 3 | 2 | 132 | 50 | 176 | 6.01e-17 | 74.3 |
| MS.gene022840.t1 | AT1G14950 | 29.139 | 151 | 103 | 3 | 1 | 150 | 1 | 148 | 7.45e-17 | 73.2 |
| MS.gene022840.t1 | AT1G23120 | 28.462 | 130 | 87 | 3 | 4 | 132 | 2 | 126 | 7.71e-17 | 73.2 |
| MS.gene022840.t1 | AT4G23680 | 30.827 | 133 | 88 | 3 | 1 | 132 | 1 | 130 | 7.99e-17 | 73.2 |
| MS.gene022840.t1 | AT2G01530 | 30.464 | 151 | 101 | 3 | 1 | 150 | 1 | 148 | 2.99e-16 | 71.6 |
| MS.gene022840.t1 | AT4G23670 | 28.477 | 151 | 104 | 3 | 1 | 150 | 1 | 148 | 3.66e-16 | 71.2 |
| MS.gene022840.t1 | AT3G26460 | 30.714 | 140 | 92 | 4 | 1 | 138 | 1 | 137 | 1.79e-15 | 69.7 |
| MS.gene022840.t1 | AT3G26450 | 29.688 | 128 | 87 | 3 | 13 | 138 | 11 | 137 | 5.57e-13 | 63.2 |
| MS.gene022840.t1 | AT1G70860 | 39.062 | 64 | 39 | 0 | 9 | 72 | 12 | 75 | 3.08e-11 | 56.6 |
Find 35 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATACCCTTTACTATATC+AGG | 0.145016 | 8.1:+84518777 | None:intergenic |
| TAAAACAAAGAGTGAGGATT+AGG | 0.284544 | 8.1:+84517525 | None:intergenic |
| CAGGGCATACATTTGAAATA+TGG | 0.304864 | 8.1:+84518796 | None:intergenic |
| AGAAATGGATGTGCCTATTA+AGG | 0.342860 | 8.1:-84518862 | MS.gene022840:CDS |
| AGTGTTGGGTGGAGACTTAT+TGG | 0.355222 | 8.1:-84517649 | MS.gene022840:CDS |
| ACCACACTTCCTTCTCTTTG+TGG | 0.370613 | 8.1:+84517588 | None:intergenic |
| TGCTGGGGAGTGGCCTTAAT+AGG | 0.384194 | 8.1:+84518849 | None:intergenic |
| TTGAACTTCATGAAGGTGAT+TGG | 0.384755 | 8.1:-84518758 | MS.gene022840:CDS |
| TGAACTTCATGAAGGTGATT+GGG | 0.392703 | 8.1:-84518757 | MS.gene022840:CDS |
| CAAAATAACTTTCAAAGTGT+TGG | 0.400707 | 8.1:-84517664 | MS.gene022840:CDS |
| AAAATAACTTTCAAAGTGTT+GGG | 0.411266 | 8.1:-84517663 | MS.gene022840:CDS |
| TGCAATTGAAAAGATAGAAA+TGG | 0.422798 | 8.1:-84518877 | MS.gene022840:CDS |
| AAAACAAAGAGTGAGGATTA+GGG | 0.456937 | 8.1:+84517526 | None:intergenic |
| CTTACCGAAAACATAATTCC+AGG | 0.459113 | 8.1:+84518713 | None:intergenic |
| GAAGGTGATTGGGGCACTGA+GGG | 0.465665 | 8.1:-84518747 | MS.gene022840:CDS |
| AAACTTGTGTTTCTAAGCAA+AGG | 0.480042 | 8.1:-84517713 | MS.gene022840:CDS |
| CTGAGGGGTGCATTATATCC+TGG | 0.482569 | 8.1:-84518731 | MS.gene022840:CDS |
| ACAAAACTTCATAAAACTGC+TGG | 0.482751 | 8.1:+84518832 | None:intergenic |
| GTATGCCCTGATATAGTAAA+GGG | 0.486941 | 8.1:-84518783 | MS.gene022840:CDS |
| TTCATAAAACTGCTGGGGAG+TGG | 0.515855 | 8.1:+84518839 | None:intergenic |
| TGTATGCCCTGATATAGTAA+AGG | 0.517053 | 8.1:-84518784 | MS.gene022840:CDS |
| CAAAACTTCATAAAACTGCT+GGG | 0.538598 | 8.1:+84518833 | None:intergenic |
| GTTGGGTGGAGACTTATTGG+AGG | 0.547743 | 8.1:-84517646 | MS.gene022840:CDS |
| CAAATTATGCCACAAAGAGA+AGG | 0.567700 | 8.1:-84517597 | MS.gene022840:CDS |
| CAATACCCTTTACTATATCA+GGG | 0.568506 | 8.1:+84518778 | None:intergenic |
| GAACTTCATGAAGGTGATTG+GGG | 0.570247 | 8.1:-84518756 | MS.gene022840:CDS |
| GAGAAGGAAGTGTGGTTCGT+CGG | 0.576383 | 8.1:-84517581 | MS.gene022840:CDS |
| ATAACTTTCAAAGTGTTGGG+TGG | 0.599542 | 8.1:-84517660 | MS.gene022840:CDS |
| GACAAATAAAACAAAGAGTG+AGG | 0.603900 | 8.1:+84517519 | None:intergenic |
| TGAAGGTGATTGGGGCACTG+AGG | 0.615934 | 8.1:-84518748 | MS.gene022840:CDS |
| TGATGCTCATCTTGCACCCG+AGG | 0.618366 | 8.1:-84517475 | MS.gene022840:CDS |
| AAGGGTATTGAACTTCATGA+AGG | 0.622666 | 8.1:-84518765 | MS.gene022840:CDS |
| AAGGTGATTGGGGCACTGAG+GGG | 0.666433 | 8.1:-84518746 | MS.gene022840:CDS |
| AAAACTTCATAAAACTGCTG+GGG | 0.672455 | 8.1:+84518834 | None:intergenic |
| GCCACAAAGAGAAGGAAGTG+TGG | 0.682037 | 8.1:-84517589 | MS.gene022840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTATTAGATTAATATAT+AGG | + | chr8.1:84518574-84518593 | None:intergenic | 10.0% |
| !! | TTATGATTATTTATAAGTTA+AGG | - | chr8.1:84518186-84518205 | MS.gene022840:intron | 10.0% |
| !!! | TTATTTTTTTATTGAAAACA+CGG | + | chr8.1:84518274-84518293 | None:intergenic | 10.0% |
| !!! | AAATTTAGAGTTTGATATAT+TGG | - | chr8.1:84518215-84518234 | MS.gene022840:intron | 15.0% |
| !!! | AAATTTTATTTACTTTCGAT+CGG | + | chr8.1:84518384-84518403 | None:intergenic | 15.0% |
| !!! | TTACTTTTATCTTAACTTTT+CGG | - | chr8.1:84517746-84517765 | MS.gene022840:intron | 15.0% |
| !! | ACAAAAATATATATGCAAGT+TGG | + | chr8.1:84518318-84518337 | None:intergenic | 20.0% |
| !! | TAAAAGTAACTTGAGTATAA+AGG | + | chr8.1:84517735-84517754 | None:intergenic | 20.0% |
| !! | TGTCTTATCTATAATTTATG+TGG | - | chr8.1:84517968-84517987 | MS.gene022840:intron | 20.0% |
| !!! | AAAATAACTTTCAAAGTGTT+GGG | - | chr8.1:84518689-84518708 | MS.gene022840:intron | 20.0% |
| !!! | ATTTTTACTTTTAAAGAGCA+TGG | - | chr8.1:84518108-84518127 | MS.gene022840:intron | 20.0% |
| !!! | TTTTACAAGTTGATTTTGTA+AGG | + | chr8.1:84517915-84517934 | None:intergenic | 20.0% |
| ! | CAAAATAACTTTCAAAGTGT+TGG | - | chr8.1:84518688-84518707 | MS.gene022840:intron | 25.0% |
| ! | TGCAATTGAAAAGATAGAAA+TGG | - | chr8.1:84517475-84517494 | MS.gene022840:CDS | 25.0% |
| ! | TTATGCAACAAAAAAAAAGC+TGG | - | chr8.1:84518614-84518633 | MS.gene022840:intron | 25.0% |
| ! | TTCCAACTATAATTCGATAT+TGG | - | chr8.1:84518416-84518435 | MS.gene022840:intron | 25.0% |
| ! | TTCCAATATCGAATTATAGT+TGG | + | chr8.1:84518421-84518440 | None:intergenic | 25.0% |
| !! | ATATCCTGGAATTATGTTTT+CGG | - | chr8.1:84517635-84517654 | MS.gene022840:CDS | 25.0% |
| !! | ATATCTGAATATAGTTGATG+TGG | - | chr8.1:84518540-84518559 | MS.gene022840:intron | 25.0% |
| !! | TTTCTTTAAGAAAGTAGTGT+TGG | + | chr8.1:84518342-84518361 | None:intergenic | 25.0% |
| !!! | TTTGTTTTATTTGTCTGTTG+AGG | - | chr8.1:84518841-84518860 | MS.gene022840:CDS | 25.0% |
| AAAACAAAGAGTGAGGATTA+GGG | + | chr8.1:84518829-84518848 | None:intergenic | 30.0% | |
| AAAACTTCATAAAACTGCTG+GGG | + | chr8.1:84517521-84517540 | None:intergenic | 30.0% | |
| ACAAAACTTCATAAAACTGC+TGG | + | chr8.1:84517523-84517542 | None:intergenic | 30.0% | |
| CAAAACTTCATAAAACTGCT+GGG | + | chr8.1:84517522-84517541 | None:intergenic | 30.0% | |
| CAATACCCTTTACTATATCA+GGG | + | chr8.1:84517577-84517596 | None:intergenic | 30.0% | |
| GACAAATAAAACAAAGAGTG+AGG | + | chr8.1:84518836-84518855 | None:intergenic | 30.0% | |
| TAAAACAAAGAGTGAGGATT+AGG | + | chr8.1:84518830-84518849 | None:intergenic | 30.0% | |
| TCAATACCCTTTACTATATC+AGG | + | chr8.1:84517578-84517597 | None:intergenic | 30.0% | |
| ! | AAACTTGTGTTTCTAAGCAA+AGG | - | chr8.1:84518639-84518658 | MS.gene022840:intron | 30.0% |
| ! | TGTCATGAACTTTAGTTCAT+CGG | + | chr8.1:84518007-84518026 | None:intergenic | 30.0% |
| !! | GTAATTTAGAGTTGATACTG+AGG | - | chr8.1:84517790-84517809 | MS.gene022840:intron | 30.0% |
| AGAAATGGATGTGCCTATTA+AGG | - | chr8.1:84517490-84517509 | MS.gene022840:CDS | 35.0% | |
| CAAATTATGCCACAAAGAGA+AGG | - | chr8.1:84518755-84518774 | MS.gene022840:CDS | 35.0% | |
| CATCAAAATATATGTACCCC+AGG | + | chr8.1:84518141-84518160 | None:intergenic | 35.0% | |
| CTTACCGAAAACATAATTCC+AGG | + | chr8.1:84517642-84517661 | None:intergenic | 35.0% | |
| GTATGCCCTGATATAGTAAA+GGG | - | chr8.1:84517569-84517588 | MS.gene022840:CDS | 35.0% | |
| GTTTGATATATTGGTCCTCT+CGG | - | chr8.1:84518224-84518243 | MS.gene022840:intron | 35.0% | |
| TCTCGACAATAACAACGATT+TGG | + | chr8.1:84518038-84518057 | None:intergenic | 35.0% | |
| TGAACTTCATGAAGGTGATT+GGG | - | chr8.1:84517595-84517614 | MS.gene022840:CDS | 35.0% | |
| TGTATGCCCTGATATAGTAA+AGG | - | chr8.1:84517568-84517587 | MS.gene022840:CDS | 35.0% | |
| TTGAACTTCATGAAGGTGAT+TGG | - | chr8.1:84517594-84517613 | MS.gene022840:CDS | 35.0% | |
| ! | CAGGGCATACATTTGAAATA+TGG | + | chr8.1:84517559-84517578 | None:intergenic | 35.0% |
| ! | CTTAACTTTTCGGTTCTCAA+GGG | - | chr8.1:84517756-84517775 | MS.gene022840:intron | 35.0% |
| ! | GTCATGAACTTTAGTTCATC+GGG | + | chr8.1:84518006-84518025 | None:intergenic | 35.0% |
| ! | TCTTAACTTTTCGGTTCTCA+AGG | - | chr8.1:84517755-84517774 | MS.gene022840:intron | 35.0% |
| !! | AAGGGTATTGAACTTCATGA+AGG | - | chr8.1:84517587-84517606 | MS.gene022840:CDS | 35.0% |
| !! | ATAACTTTCAAAGTGTTGGG+TGG | - | chr8.1:84518692-84518711 | MS.gene022840:intron | 35.0% |
| GAACTTCATGAAGGTGATTG+GGG | - | chr8.1:84517596-84517615 | MS.gene022840:CDS | 40.0% | |
| ! | AAAGAGCATGGTTGAAAACC+TGG | - | chr8.1:84518120-84518139 | MS.gene022840:intron | 40.0% |
| ! | AAGAGCATGGTTGAAAACCT+GGG | - | chr8.1:84518121-84518140 | MS.gene022840:intron | 40.0% |
| !! | GGATTAGTCGATTCTTGGAT+CGG | - | chr8.1:84518245-84518264 | MS.gene022840:intron | 40.0% |
| ACCACACTTCCTTCTCTTTG+TGG | + | chr8.1:84518767-84518786 | None:intergenic | 45.0% | |
| AGAGCATGGTTGAAAACCTG+GGG | - | chr8.1:84518122-84518141 | MS.gene022840:intron | 45.0% | |
| CAAGAATCGACTAATCCGAG+AGG | + | chr8.1:84518242-84518261 | None:intergenic | 45.0% | |
| GTTCTCAAGGGTAAAAGTCG+TGG | - | chr8.1:84517768-84517787 | MS.gene022840:intron | 45.0% | |
| TTCATAAAACTGCTGGGGAG+TGG | + | chr8.1:84517516-84517535 | None:intergenic | 45.0% | |
| ! | AGTGTTGGGTGGAGACTTAT+TGG | - | chr8.1:84518703-84518722 | MS.gene022840:intron | 45.0% |
| !! | CTCTCGGATTAGTCGATTCT+TGG | - | chr8.1:84518240-84518259 | MS.gene022840:intron | 45.0% |
| !!! | AGATATATTTATTTTAATTT+TGG | - | chr8.1:84518590-84518609 | MS.gene022840:intron | 5.0% |
| !!! | CTATATTATATTTTTATATT+TGG | - | chr8.1:84517879-84517898 | MS.gene022840:intron | 5.0% |
| !!! | GATATATTTATTTTAATTTT+GGG | - | chr8.1:84518591-84518610 | MS.gene022840:intron | 5.0% |
| GCCACAAAGAGAAGGAAGTG+TGG | - | chr8.1:84518763-84518782 | MS.gene022840:CDS | 50.0% | |
| GTTGGGTGGAGACTTATTGG+AGG | - | chr8.1:84518706-84518725 | MS.gene022840:intron | 50.0% | |
| ! | CTGAGGGGTGCATTATATCC+TGG | - | chr8.1:84517621-84517640 | MS.gene022840:CDS | 50.0% |
| ! | GAGAAGGAAGTGTGGTTCGT+CGG | - | chr8.1:84518771-84518790 | MS.gene022840:CDS | 50.0% |
| TGATGCTCATCTTGCACCCG+AGG | - | chr8.1:84518877-84518896 | MS.gene022840:CDS | 55.0% | |
| ! | TGCTGGGGAGTGGCCTTAAT+AGG | + | chr8.1:84517506-84517525 | None:intergenic | 55.0% |
| !! | AAGGTGATTGGGGCACTGAG+GGG | - | chr8.1:84517606-84517625 | MS.gene022840:CDS | 55.0% |
| !! | GAAGGTGATTGGGGCACTGA+GGG | - | chr8.1:84517605-84517624 | MS.gene022840:CDS | 55.0% |
| !! | TGAAGGTGATTGGGGCACTG+AGG | - | chr8.1:84517604-84517623 | MS.gene022840:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 84517464 | 84518910 | 84517464 | ID=MS.gene022840 |
| chr8.1 | mRNA | 84517464 | 84518910 | 84517464 | ID=MS.gene022840.t1;Parent=MS.gene022840 |
| chr8.1 | exon | 84518718 | 84518910 | 84518718 | ID=MS.gene022840.t1.exon1;Parent=MS.gene022840.t1 |
| chr8.1 | CDS | 84518718 | 84518910 | 84518718 | ID=cds.MS.gene022840.t1;Parent=MS.gene022840.t1 |
| chr8.1 | exon | 84517464 | 84517741 | 84517464 | ID=MS.gene022840.t1.exon2;Parent=MS.gene022840.t1 |
| chr8.1 | CDS | 84517464 | 84517741 | 84517464 | ID=cds.MS.gene022840.t1;Parent=MS.gene022840.t1 |
| Gene Sequence |
| Protein sequence |
