Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43899.t1 | XP_003613297.1 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 1.30E-80 | 308.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43899.t1 | Q93VR4 | 51.7 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 8.0e-42 | 171.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43899.t1 | B7FKA0 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 9.6e-81 | 308.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene43899 | 0.836542 | 8.80E-57 | -1.69E-46 |
MS.gene049681 | MS.gene43899 | 0.805728 | 1.16E-49 | -1.69E-46 |
MS.gene049758 | MS.gene43899 | 0.831409 | 1.70E-55 | -1.69E-46 |
MS.gene050099 | MS.gene43899 | 0.813159 | 2.95E-51 | -1.69E-46 |
MS.gene050128 | MS.gene43899 | 0.871297 | 7.61E-67 | -1.69E-46 |
MS.gene050301 | MS.gene43899 | 0.846947 | 1.58E-59 | -1.69E-46 |
MS.gene050581 | MS.gene43899 | 0.847726 | 9.63E-60 | -1.69E-46 |
MS.gene05101 | MS.gene43899 | 0.81162 | 6.39E-51 | -1.69E-46 |
MS.gene051471 | MS.gene43899 | 0.813148 | 2.96E-51 | -1.69E-46 |
MS.gene051789 | MS.gene43899 | 0.825587 | 4.32E-54 | -1.69E-46 |
MS.gene051860 | MS.gene43899 | 0.802186 | 6.32E-49 | -1.69E-46 |
MS.gene052078 | MS.gene43899 | 0.844761 | 6.19E-59 | -1.69E-46 |
MS.gene052178 | MS.gene43899 | 0.890917 | 6.38E-74 | -1.69E-46 |
MS.gene052287 | MS.gene43899 | 0.818925 | 1.52E-52 | -1.69E-46 |
MS.gene052326 | MS.gene43899 | 0.814951 | 1.19E-51 | -1.69E-46 |
MS.gene053074 | MS.gene43899 | 0.821005 | 5.08E-53 | -1.69E-46 |
MS.gene053204 | MS.gene43899 | 0.820005 | 8.62E-53 | -1.69E-46 |
MS.gene053557 | MS.gene43899 | 0.816372 | 5.72E-52 | -1.69E-46 |
MS.gene053836 | MS.gene43899 | 0.828328 | 9.56E-55 | -1.69E-46 |
MS.gene054010 | MS.gene43899 | 0.862238 | 5.84E-64 | -1.69E-46 |
MS.gene054011 | MS.gene43899 | 0.874056 | 9.10E-68 | -1.69E-46 |
MS.gene054012 | MS.gene43899 | 0.869049 | 4.14E-66 | -1.69E-46 |
MS.gene054013 | MS.gene43899 | 0.867181 | 1.65E-65 | -1.69E-46 |
MS.gene054184 | MS.gene43899 | 0.817229 | 3.67E-52 | -1.69E-46 |
MS.gene054185 | MS.gene43899 | 0.817563 | 3.09E-52 | -1.69E-46 |
MS.gene054214 | MS.gene43899 | 0.875954 | 2.05E-68 | -1.69E-46 |
MS.gene054596 | MS.gene43899 | 0.802055 | 6.73E-49 | -1.69E-46 |
MS.gene054618 | MS.gene43899 | 0.820344 | 7.21E-53 | -1.69E-46 |
MS.gene055277 | MS.gene43899 | 0.856535 | 3.01E-62 | -1.69E-46 |
MS.gene055390 | MS.gene43899 | 0.81861 | 1.79E-52 | -1.69E-46 |
MS.gene055422 | MS.gene43899 | 0.849258 | 3.63E-60 | -1.69E-46 |
MS.gene055428 | MS.gene43899 | 0.835356 | 1.76E-56 | -1.69E-46 |
MS.gene055604 | MS.gene43899 | 0.881334 | 2.62E-70 | -1.69E-46 |
MS.gene056191 | MS.gene43899 | 0.84112 | 5.76E-58 | -1.69E-46 |
MS.gene056314 | MS.gene43899 | 0.800869 | 1.18E-48 | -1.69E-46 |
MS.gene056612 | MS.gene43899 | 0.812581 | 3.95E-51 | -1.69E-46 |
MS.gene056772 | MS.gene43899 | 0.824556 | 7.57E-54 | -1.69E-46 |
MS.gene056902 | MS.gene43899 | 0.827591 | 1.44E-54 | -1.69E-46 |
MS.gene056931 | MS.gene43899 | 0.830819 | 2.37E-55 | -1.69E-46 |
MS.gene056933 | MS.gene43899 | 0.829928 | 3.91E-55 | -1.69E-46 |
MS.gene056935 | MS.gene43899 | 0.814988 | 1.16E-51 | -1.69E-46 |
MS.gene05702 | MS.gene43899 | 0.821201 | 4.58E-53 | -1.69E-46 |
MS.gene05733 | MS.gene43899 | 0.814089 | 1.84E-51 | -1.69E-46 |
MS.gene057439 | MS.gene43899 | 0.815399 | 9.43E-52 | -1.69E-46 |
MS.gene057752 | MS.gene43899 | 0.805964 | 1.04E-49 | -1.69E-46 |
MS.gene057779 | MS.gene43899 | 0.805295 | 1.43E-49 | -1.69E-46 |
MS.gene057796 | MS.gene43899 | 0.814077 | 1.85E-51 | -1.69E-46 |
MS.gene058002 | MS.gene43899 | 0.820679 | 6.04E-53 | -1.69E-46 |
MS.gene05811 | MS.gene43899 | 0.82964 | 4.60E-55 | -1.69E-46 |
MS.gene058660 | MS.gene43899 | 0.812527 | 4.05E-51 | -1.69E-46 |
MS.gene059006 | MS.gene43899 | 0.806272 | 8.91E-50 | -1.69E-46 |
MS.gene05907 | MS.gene43899 | 0.806914 | 6.53E-50 | -1.69E-46 |
MS.gene059228 | MS.gene43899 | 0.88659 | 2.99E-72 | -1.69E-46 |
MS.gene059294 | MS.gene43899 | 0.857677 | 1.39E-62 | -1.69E-46 |
MS.gene059518 | MS.gene43899 | 0.82825 | 9.98E-55 | -1.69E-46 |
MS.gene059692 | MS.gene43899 | 0.804368 | 2.23E-49 | -1.69E-46 |
MS.gene059695 | MS.gene43899 | 0.800488 | 1.41E-48 | -1.69E-46 |
MS.gene05984 | MS.gene43899 | 0.826848 | 2.17E-54 | -1.69E-46 |
MS.gene059894 | MS.gene43899 | 0.834938 | 2.24E-56 | -1.69E-46 |
MS.gene059974 | MS.gene43899 | 0.894164 | 3.19E-75 | -1.69E-46 |
MS.gene060005 | MS.gene43899 | 0.883032 | 6.32E-71 | -1.69E-46 |
MS.gene06037 | MS.gene43899 | 0.873181 | 1.79E-67 | -1.69E-46 |
MS.gene060476 | MS.gene43899 | 0.832616 | 8.54E-56 | -1.69E-46 |
MS.gene060559 | MS.gene43899 | 0.827906 | 1.21E-54 | -1.69E-46 |
MS.gene060800 | MS.gene43899 | 0.837556 | 4.85E-57 | -1.69E-46 |
MS.gene061049 | MS.gene43899 | 0.854124 | 1.52E-61 | -1.69E-46 |
MS.gene061112 | MS.gene43899 | 0.826161 | 3.16E-54 | -1.69E-46 |
MS.gene061265 | MS.gene43899 | 0.82585 | 3.74E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene022840 | MS.gene43899 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43899.t1 | MTR_5g035010 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.26e-110 | 310 |
MS.gene43899.t1 | MTR_8g012550 | 29.801 | 151 | 105 | 1 | 1 | 151 | 1 | 150 | 1.23e-19 | 80.5 |
MS.gene43899.t1 | MTR_1g030810 | 32.026 | 153 | 97 | 5 | 3 | 151 | 1 | 150 | 2.32e-15 | 69.3 |
MS.gene43899.t1 | MTR_1g030820 | 30.968 | 155 | 96 | 6 | 3 | 151 | 1 | 150 | 4.13e-14 | 65.9 |
MS.gene43899.t1 | MTR_1g030840 | 30.827 | 133 | 86 | 3 | 3 | 130 | 1 | 132 | 2.16e-12 | 61.6 |
MS.gene43899.t1 | MTR_1g031640 | 29.630 | 135 | 86 | 5 | 9 | 141 | 7 | 134 | 2.36e-12 | 61.2 |
MS.gene43899.t1 | MTR_8g045520 | 27.097 | 155 | 109 | 4 | 3 | 155 | 1 | 153 | 6.55e-12 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43899.t1 | AT1G24020 | 51.678 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 2.71e-55 | 171 |
MS.gene43899.t1 | AT1G24020 | 51.678 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 2.71e-55 | 171 |
MS.gene43899.t1 | AT1G70830 | 34.868 | 152 | 96 | 2 | 2 | 151 | 19 | 169 | 2.11e-22 | 88.2 |
MS.gene43899.t1 | AT1G70830 | 34.868 | 152 | 96 | 2 | 2 | 151 | 19 | 169 | 3.89e-22 | 88.2 |
MS.gene43899.t1 | AT1G70840 | 36.667 | 150 | 92 | 2 | 4 | 151 | 19 | 167 | 4.13e-22 | 87.4 |
MS.gene43899.t1 | AT1G70830 | 34.868 | 152 | 96 | 2 | 2 | 151 | 19 | 169 | 1.43e-21 | 87.8 |
MS.gene43899.t1 | AT1G70850 | 34.416 | 154 | 98 | 2 | 2 | 153 | 6 | 158 | 1.93e-21 | 87.0 |
MS.gene43899.t1 | AT1G70830 | 34.868 | 152 | 96 | 2 | 2 | 151 | 19 | 169 | 3.52e-21 | 88.2 |
MS.gene43899.t1 | AT1G70830 | 33.333 | 150 | 97 | 2 | 4 | 151 | 183 | 331 | 1.72e-19 | 83.6 |
MS.gene43899.t1 | AT1G70850 | 34.416 | 154 | 98 | 2 | 2 | 153 | 6 | 158 | 6.02e-21 | 87.0 |
MS.gene43899.t1 | AT1G70850 | 33.813 | 139 | 89 | 2 | 15 | 151 | 175 | 312 | 2.28e-17 | 77.4 |
MS.gene43899.t1 | AT1G70850 | 34.416 | 154 | 98 | 2 | 2 | 153 | 6 | 158 | 6.02e-21 | 87.0 |
MS.gene43899.t1 | AT1G70850 | 33.813 | 139 | 89 | 2 | 15 | 151 | 175 | 312 | 2.28e-17 | 77.4 |
MS.gene43899.t1 | AT1G70890 | 36.184 | 152 | 94 | 3 | 2 | 151 | 4 | 154 | 7.39e-21 | 83.6 |
MS.gene43899.t1 | AT1G70830 | 33.333 | 150 | 97 | 2 | 4 | 151 | 136 | 284 | 8.27e-20 | 83.6 |
MS.gene43899.t1 | AT1G70830 | 36.471 | 85 | 52 | 1 | 69 | 151 | 38 | 122 | 9.82e-11 | 58.9 |
MS.gene43899.t1 | AT5G28010 | 31.579 | 152 | 101 | 2 | 4 | 153 | 14 | 164 | 2.62e-19 | 79.7 |
MS.gene43899.t1 | AT5G28010 | 31.579 | 152 | 101 | 2 | 4 | 153 | 14 | 164 | 2.62e-19 | 79.7 |
MS.gene43899.t1 | AT5G28000 | 32.237 | 152 | 100 | 2 | 4 | 153 | 12 | 162 | 5.46e-18 | 76.3 |
MS.gene43899.t1 | AT1G70880 | 31.169 | 154 | 103 | 3 | 2 | 153 | 5 | 157 | 4.68e-17 | 73.9 |
MS.gene43899.t1 | AT1G14930 | 28.289 | 152 | 102 | 3 | 3 | 151 | 1 | 148 | 7.33e-14 | 65.5 |
MS.gene43899.t1 | AT1G35260 | 31.081 | 148 | 96 | 4 | 9 | 153 | 6 | 150 | 2.50e-13 | 63.9 |
MS.gene43899.t1 | AT3G26460 | 25.333 | 150 | 110 | 2 | 3 | 151 | 1 | 149 | 7.23e-11 | 57.4 |
Find 35 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGTCATGTGGGAAGGCCTT+AGG | 0.333006 | 5.2:-25485276 | None:intergenic |
AATAGTTGTAGAATCCCTTA+TGG | 0.338562 | 5.2:-25485250 | None:intergenic |
GCAAAATCTTTGACAATAGT+TGG | 0.338740 | 5.2:-25486041 | None:intergenic |
ATCCCCTTCAATTATACAAT+AGG | 0.381348 | 5.2:-25485904 | None:intergenic |
ATCTCACATCCTTCTCCAAC+TGG | 0.381866 | 5.2:-25485972 | None:intergenic |
CCTTGAATGATTTGTAGTAT+TGG | 0.436050 | 5.2:-25485932 | None:intergenic |
CCAATACTACAAATCATTCA+AGG | 0.446219 | 5.2:+25485932 | MS.gene43899:CDS |
AGTCTAATGCAGACAAGTAC+TGG | 0.454231 | 5.2:+25485223 | MS.gene43899:CDS |
AGTCATGTGGGAAGGCCTTA+GGG | 0.459268 | 5.2:-25485275 | None:intergenic |
GAGAAGGATGTGAGATGAAA+TGG | 0.470943 | 5.2:+25485979 | MS.gene43899:CDS |
ACAAGTACTGGCAAACCATA+AGG | 0.476885 | 5.2:+25485235 | MS.gene43899:CDS |
GAGGGTGATGGTAAAGCTCC+TGG | 0.482745 | 5.2:+25485318 | MS.gene43899:CDS |
TCTTTGACAATAGTTGGATC+AGG | 0.487708 | 5.2:-25486035 | None:intergenic |
GTGAAGTGGCGGATAGAGCC+AGG | 0.488549 | 5.2:-25485336 | None:intergenic |
GCAACCTATTGTATAATTGA+AGG | 0.505768 | 5.2:+25485900 | MS.gene43899:CDS |
AAAAGCATTGAGGTCCTTGA+GGG | 0.507266 | 5.2:+25485300 | MS.gene43899:CDS |
CAAGTACTGGCAAACCATAA+GGG | 0.509772 | 5.2:+25485236 | MS.gene43899:CDS |
ATCATGGCTGTAGCTCTTCG+TGG | 0.517791 | 5.2:+25485174 | None:intergenic |
CAACCTATTGTATAATTGAA+GGG | 0.524179 | 5.2:+25485901 | MS.gene43899:CDS |
TACCTTCAGCATAAGTGAAG+TGG | 0.548909 | 5.2:-25485350 | None:intergenic |
TGCAGTCAAGAACTTCATTG+AGG | 0.557320 | 5.2:+25486061 | MS.gene43899:CDS |
CAAAAGCATTGAGGTCCTTG+AGG | 0.558857 | 5.2:+25485299 | MS.gene43899:CDS |
CGCCACTTCACTTATGCTGA+AGG | 0.559188 | 5.2:+25485348 | MS.gene43899:CDS |
ATTGAGGTCCTTGAGGGTGA+TGG | 0.560374 | 5.2:+25485306 | MS.gene43899:CDS |
CATCTTGCTGTAACACCAGT+TGG | 0.560972 | 5.2:+25485957 | MS.gene43899:CDS |
CAATACTACAAATCATTCAA+GGG | 0.584423 | 5.2:+25485933 | MS.gene43899:CDS |
GCTGTAACACCAGTTGGAGA+AGG | 0.585512 | 5.2:+25485963 | MS.gene43899:CDS |
AACCTATTGTATAATTGAAG+GGG | 0.589185 | 5.2:+25485902 | MS.gene43899:CDS |
GAGCTTTACCATCACCCTCA+AGG | 0.617751 | 5.2:-25485314 | None:intergenic |
ATGCTGCTGATGATGAAAAG+AGG | 0.618271 | 5.2:+25485874 | MS.gene43899:CDS |
AGTCAAGAACTTCATTGAGG+TGG | 0.628959 | 5.2:+25486064 | MS.gene43899:CDS |
CTTCAGCATAAGTGAAGTGG+CGG | 0.638511 | 5.2:-25485347 | None:intergenic |
AAAACTCGCGAAGTCTTCGA+CGG | 0.651660 | 5.2:+25485842 | MS.gene43899:CDS |
AGCTCTTCGTGGAAAGCTAG+AGG | 0.660101 | 5.2:+25485185 | MS.gene43899:CDS |
ACATGACTACAAAAGCATTG+AGG | 0.674108 | 5.2:+25485290 | MS.gene43899:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGATGAAATTCAATAAATA+AGG | + | chr5.2:25485540-25485559 | MS.gene43899:intron | 15.0% |
!! | TGATGAAATTCAATAAATAA+GGG | + | chr5.2:25485541-25485560 | MS.gene43899:intron | 15.0% |
!! | TTGATCCTACAATATATTAT+AGG | - | chr5.2:25485824-25485843 | None:intergenic | 20.0% |
!!! | AATAAATAAGGGTATATCAA+TGG | + | chr5.2:25485552-25485571 | MS.gene43899:intron | 20.0% |
! | AACCTATTGTATAATTGAAG+GGG | + | chr5.2:25485902-25485921 | MS.gene43899:CDS | 25.0% |
! | AATTTAGAGACTTTCTTCTT+TGG | + | chr5.2:25485374-25485393 | MS.gene43899:intron | 25.0% |
! | CAACCTATTGTATAATTGAA+GGG | + | chr5.2:25485901-25485920 | MS.gene43899:CDS | 25.0% |
! | CAATACTACAAATCATTCAA+GGG | + | chr5.2:25485933-25485952 | MS.gene43899:CDS | 25.0% |
! | TCATACATTCTTATCTGATT+TGG | + | chr5.2:25485795-25485814 | MS.gene43899:intron | 25.0% |
! | TGTTAAATCGATGATTAAAG+AGG | + | chr5.2:25485639-25485658 | MS.gene43899:intron | 25.0% |
AATAGTTGTAGAATCCCTTA+TGG | - | chr5.2:25485253-25485272 | None:intergenic | 30.0% | |
ATCCCCTTCAATTATACAAT+AGG | - | chr5.2:25485907-25485926 | None:intergenic | 30.0% | |
CCAATACTACAAATCATTCA+AGG | + | chr5.2:25485932-25485951 | MS.gene43899:CDS | 30.0% | |
GCAAAATCTTTGACAATAGT+TGG | - | chr5.2:25486044-25486063 | None:intergenic | 30.0% | |
GCAACCTATTGTATAATTGA+AGG | + | chr5.2:25485900-25485919 | MS.gene43899:CDS | 30.0% | |
! | CCTTGAATGATTTGTAGTAT+TGG | - | chr5.2:25485935-25485954 | None:intergenic | 30.0% |
! | TTCTACAACTATTTTCCCTA+AGG | + | chr5.2:25485260-25485279 | MS.gene43899:CDS | 30.0% |
!! | TACATTCTTATCTGATTTGG+TGG | + | chr5.2:25485798-25485817 | MS.gene43899:intron | 30.0% |
AAAGCGATACATGAATCTCT+TGG | - | chr5.2:25485732-25485751 | None:intergenic | 35.0% | |
ATTAAAGAGGTAGAGACACT+AGG | + | chr5.2:25485652-25485671 | MS.gene43899:intron | 35.0% | |
CTTCTTTGGTAGAGAATGAA+GGG | + | chr5.2:25485388-25485407 | MS.gene43899:intron | 35.0% | |
GGTGGCCTATAATATATTGT+AGG | + | chr5.2:25485816-25485835 | MS.gene43899:intron | 35.0% | |
GTCAAATGCAACGAATATTG+TGG | - | chr5.2:25485495-25485514 | None:intergenic | 35.0% | |
TCTTCTTTGGTAGAGAATGA+AGG | + | chr5.2:25485387-25485406 | MS.gene43899:intron | 35.0% | |
TCTTTGACAATAGTTGGATC+AGG | - | chr5.2:25486038-25486057 | None:intergenic | 35.0% | |
! | CAATGCTTTTGTAGTCATGT+GGG | - | chr5.2:25485290-25485309 | None:intergenic | 35.0% |
! | TCAATGCTTTTGTAGTCATG+TGG | - | chr5.2:25485291-25485310 | None:intergenic | 35.0% |
!! | ACATGACTACAAAAGCATTG+AGG | + | chr5.2:25485290-25485309 | MS.gene43899:CDS | 35.0% |
!!! | TAGAGAATGAAGGGCATTTT+GGG | + | chr5.2:25485397-25485416 | MS.gene43899:intron | 35.0% |
AGTCAAGAACTTCATTGAGG+TGG | + | chr5.2:25486064-25486083 | MS.gene43899:CDS | 40.0% | |
AGTCTAATGCAGACAAGTAC+TGG | + | chr5.2:25485223-25485242 | MS.gene43899:CDS | 40.0% | |
GAGAAGGATGTGAGATGAAA+TGG | + | chr5.2:25485979-25485998 | MS.gene43899:CDS | 40.0% | |
TACCTTCAGCATAAGTGAAG+TGG | - | chr5.2:25485353-25485372 | None:intergenic | 40.0% | |
TGCAGTCAAGAACTTCATTG+AGG | + | chr5.2:25486061-25486080 | MS.gene43899:CDS | 40.0% | |
! | ATGCTGCTGATGATGAAAAG+AGG | + | chr5.2:25485874-25485893 | MS.gene43899:CDS | 40.0% |
!! | AAAAGCATTGAGGTCCTTGA+GGG | + | chr5.2:25485300-25485319 | MS.gene43899:CDS | 40.0% |
!! | ACAAGTACTGGCAAACCATA+AGG | + | chr5.2:25485235-25485254 | MS.gene43899:CDS | 40.0% |
!! | CAAGTACTGGCAAACCATAA+GGG | + | chr5.2:25485236-25485255 | MS.gene43899:CDS | 40.0% |
!!! | GTAGAGAATGAAGGGCATTT+TGG | + | chr5.2:25485396-25485415 | MS.gene43899:intron | 40.0% |
AAAACTCGCGAAGTCTTCGA+CGG | + | chr5.2:25485842-25485861 | MS.gene43899:CDS | 45.0% | |
ATCTCACATCCTTCTCCAAC+TGG | - | chr5.2:25485975-25485994 | None:intergenic | 45.0% | |
CATGAATCTCTTGGAACGCT+AGG | - | chr5.2:25485723-25485742 | None:intergenic | 45.0% | |
CTTCAGCATAAGTGAAGTGG+CGG | - | chr5.2:25485350-25485369 | None:intergenic | 45.0% | |
! | CATCTTGCTGTAACACCAGT+TGG | + | chr5.2:25485957-25485976 | MS.gene43899:CDS | 45.0% |
! | GCTTTTGTAGTCATGTGGGA+AGG | - | chr5.2:25485286-25485305 | None:intergenic | 45.0% |
!! | CAAAAGCATTGAGGTCCTTG+AGG | + | chr5.2:25485299-25485318 | MS.gene43899:CDS | 45.0% |
AGCTCTTCGTGGAAAGCTAG+AGG | + | chr5.2:25485185-25485204 | MS.gene43899:CDS | 50.0% | |
AGTCATGTGGGAAGGCCTTA+GGG | - | chr5.2:25485278-25485297 | None:intergenic | 50.0% | |
ATTGAGGTCCTTGAGGGTGA+TGG | + | chr5.2:25485306-25485325 | MS.gene43899:CDS | 50.0% | |
CGCCACTTCACTTATGCTGA+AGG | + | chr5.2:25485348-25485367 | MS.gene43899:CDS | 50.0% | |
GAGCTTTACCATCACCCTCA+AGG | - | chr5.2:25485317-25485336 | None:intergenic | 50.0% | |
GCTGTAACACCAGTTGGAGA+AGG | + | chr5.2:25485963-25485982 | MS.gene43899:CDS | 50.0% | |
TAGTCATGTGGGAAGGCCTT+AGG | - | chr5.2:25485279-25485298 | None:intergenic | 50.0% | |
AACGCTAGGCACTAGTGCAG+TGG | - | chr5.2:25485709-25485728 | None:intergenic | 55.0% | |
! | GAGGGTGATGGTAAAGCTCC+TGG | + | chr5.2:25485318-25485337 | MS.gene43899:CDS | 55.0% |
!! | GTGAAGTGGCGGATAGAGCC+AGG | - | chr5.2:25485339-25485358 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 25485177 | 25486115 | 25485177 | ID=MS.gene43899 |
chr5.2 | mRNA | 25485177 | 25486115 | 25485177 | ID=MS.gene43899.t1;Parent=MS.gene43899 |
chr5.2 | exon | 25485177 | 25485369 | 25485177 | ID=MS.gene43899.t1.exon1;Parent=MS.gene43899.t1 |
chr5.2 | CDS | 25485177 | 25485369 | 25485177 | ID=cds.MS.gene43899.t1;Parent=MS.gene43899.t1 |
chr5.2 | exon | 25485838 | 25486115 | 25485838 | ID=MS.gene43899.t1.exon2;Parent=MS.gene43899.t1 |
chr5.2 | CDS | 25485838 | 25486115 | 25485838 | ID=cds.MS.gene43899.t1;Parent=MS.gene43899.t1 |
Gene Sequence |
Protein sequence |