Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68338.t1 | XP_003613297.1 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 1.30E-80 | 308.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68338.t1 | Q93VR4 | 51.7 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 8.0e-42 | 171.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68338.t1 | B7FKA0 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 9.6e-81 | 308.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene68338 | 0.835841 | 1.33E-56 | -1.69E-46 |
MS.gene049681 | MS.gene68338 | 0.809987 | 1.44E-50 | -1.69E-46 |
MS.gene049758 | MS.gene68338 | 0.824667 | 7.13E-54 | -1.69E-46 |
MS.gene050099 | MS.gene68338 | 0.811906 | 5.54E-51 | -1.69E-46 |
MS.gene050128 | MS.gene68338 | 0.865132 | 7.37E-65 | -1.69E-46 |
MS.gene050301 | MS.gene68338 | 0.841507 | 4.56E-58 | -1.69E-46 |
MS.gene050581 | MS.gene68338 | 0.841605 | 4.29E-58 | -1.69E-46 |
MS.gene05101 | MS.gene68338 | 0.810401 | 1.17E-50 | -1.69E-46 |
MS.gene051471 | MS.gene68338 | 0.808396 | 3.16E-50 | -1.69E-46 |
MS.gene051789 | MS.gene68338 | 0.829244 | 5.74E-55 | -1.69E-46 |
MS.gene051860 | MS.gene68338 | 0.800332 | 1.51E-48 | -1.69E-46 |
MS.gene052078 | MS.gene68338 | 0.842027 | 3.32E-58 | -1.69E-46 |
MS.gene052178 | MS.gene68338 | 0.88694 | 2.21E-72 | -1.69E-46 |
MS.gene052287 | MS.gene68338 | 0.818038 | 2.41E-52 | -1.69E-46 |
MS.gene052326 | MS.gene68338 | 0.804296 | 2.31E-49 | -1.69E-46 |
MS.gene053074 | MS.gene68338 | 0.812106 | 5.01E-51 | -1.69E-46 |
MS.gene053204 | MS.gene68338 | 0.807243 | 5.56E-50 | -1.69E-46 |
MS.gene053557 | MS.gene68338 | 0.810532 | 1.10E-50 | -1.69E-46 |
MS.gene053836 | MS.gene68338 | 0.826978 | 2.02E-54 | -1.69E-46 |
MS.gene054010 | MS.gene68338 | 0.861442 | 1.02E-63 | -1.69E-46 |
MS.gene054011 | MS.gene68338 | 0.871387 | 7.11E-67 | -1.69E-46 |
MS.gene054012 | MS.gene68338 | 0.864953 | 8.39E-65 | -1.69E-46 |
MS.gene054013 | MS.gene68338 | 0.862681 | 4.27E-64 | -1.69E-46 |
MS.gene054184 | MS.gene68338 | 0.813767 | 2.17E-51 | -1.69E-46 |
MS.gene054185 | MS.gene68338 | 0.813993 | 1.93E-51 | -1.69E-46 |
MS.gene054214 | MS.gene68338 | 0.865154 | 7.25E-65 | -1.69E-46 |
MS.gene054618 | MS.gene68338 | 0.817002 | 4.13E-52 | -1.69E-46 |
MS.gene055277 | MS.gene68338 | 0.853028 | 3.13E-61 | -1.69E-46 |
MS.gene055390 | MS.gene68338 | 0.814167 | 1.77E-51 | -1.69E-46 |
MS.gene055422 | MS.gene68338 | 0.84463 | 6.71E-59 | -1.69E-46 |
MS.gene055428 | MS.gene68338 | 0.833492 | 5.17E-56 | -1.69E-46 |
MS.gene055604 | MS.gene68338 | 0.882157 | 1.32E-70 | -1.69E-46 |
MS.gene056191 | MS.gene68338 | 0.842762 | 2.12E-58 | -1.69E-46 |
MS.gene056612 | MS.gene68338 | 0.806995 | 6.27E-50 | -1.69E-46 |
MS.gene056772 | MS.gene68338 | 0.819421 | 1.17E-52 | -1.69E-46 |
MS.gene056902 | MS.gene68338 | 0.827695 | 1.36E-54 | -1.69E-46 |
MS.gene056931 | MS.gene68338 | 0.833223 | 6.03E-56 | -1.69E-46 |
MS.gene056933 | MS.gene68338 | 0.832499 | 9.13E-56 | -1.69E-46 |
MS.gene056935 | MS.gene68338 | 0.816096 | 6.59E-52 | -1.69E-46 |
MS.gene05702 | MS.gene68338 | 0.817594 | 3.04E-52 | -1.69E-46 |
MS.gene05733 | MS.gene68338 | 0.812657 | 3.80E-51 | -1.69E-46 |
MS.gene057439 | MS.gene68338 | 0.815627 | 8.39E-52 | -1.69E-46 |
MS.gene057752 | MS.gene68338 | 0.802876 | 4.56E-49 | -1.69E-46 |
MS.gene057779 | MS.gene68338 | 0.8 | 1.77E-48 | -1.69E-46 |
MS.gene057796 | MS.gene68338 | 0.81104 | 8.54E-51 | -1.69E-46 |
MS.gene058002 | MS.gene68338 | 0.822522 | 2.26E-53 | -1.69E-46 |
MS.gene05811 | MS.gene68338 | 0.826306 | 2.92E-54 | -1.69E-46 |
MS.gene058660 | MS.gene68338 | 0.807982 | 3.87E-50 | -1.69E-46 |
MS.gene059006 | MS.gene68338 | 0.806804 | 6.88E-50 | -1.69E-46 |
MS.gene05907 | MS.gene68338 | 0.801521 | 8.66E-49 | -1.69E-46 |
MS.gene059228 | MS.gene68338 | 0.881191 | 2.95E-70 | -1.69E-46 |
MS.gene059294 | MS.gene68338 | 0.854122 | 1.52E-61 | -1.69E-46 |
MS.gene059518 | MS.gene68338 | 0.826917 | 2.09E-54 | -1.69E-46 |
MS.gene059692 | MS.gene68338 | 0.800565 | 1.36E-48 | -1.69E-46 |
MS.gene05984 | MS.gene68338 | 0.825653 | 4.17E-54 | -1.69E-46 |
MS.gene059894 | MS.gene68338 | 0.828445 | 8.96E-55 | -1.69E-46 |
MS.gene059974 | MS.gene68338 | 0.892037 | 2.30E-74 | -1.69E-46 |
MS.gene060005 | MS.gene68338 | 0.878239 | 3.30E-69 | -1.69E-46 |
MS.gene06037 | MS.gene68338 | 0.869116 | 3.94E-66 | -1.69E-46 |
MS.gene060476 | MS.gene68338 | 0.828666 | 7.92E-55 | -1.69E-46 |
MS.gene060559 | MS.gene68338 | 0.829317 | 5.51E-55 | -1.69E-46 |
MS.gene060800 | MS.gene68338 | 0.836935 | 6.99E-57 | -1.69E-46 |
MS.gene061049 | MS.gene68338 | 0.850477 | 1.66E-60 | -1.69E-46 |
MS.gene061112 | MS.gene68338 | 0.814667 | 1.37E-51 | -1.69E-46 |
MS.gene061265 | MS.gene68338 | 0.814676 | 1.36E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene68338 | MS.gene022840 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68338.t1 | MTR_5g035010 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.26e-110 | 310 |
MS.gene68338.t1 | MTR_8g012550 | 29.801 | 151 | 105 | 1 | 1 | 151 | 1 | 150 | 1.23e-19 | 80.5 |
MS.gene68338.t1 | MTR_1g030810 | 32.026 | 153 | 97 | 5 | 3 | 151 | 1 | 150 | 2.32e-15 | 69.3 |
MS.gene68338.t1 | MTR_1g030820 | 30.968 | 155 | 96 | 6 | 3 | 151 | 1 | 150 | 4.13e-14 | 65.9 |
MS.gene68338.t1 | MTR_1g030840 | 30.827 | 133 | 86 | 3 | 3 | 130 | 1 | 132 | 2.16e-12 | 61.6 |
MS.gene68338.t1 | MTR_1g031640 | 29.630 | 135 | 86 | 5 | 9 | 141 | 7 | 134 | 2.36e-12 | 61.2 |
MS.gene68338.t1 | MTR_8g045520 | 27.097 | 155 | 109 | 4 | 3 | 155 | 1 | 153 | 6.55e-12 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68338.t1 | AT1G24020 | 51.678 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 2.71e-55 | 171 |
MS.gene68338.t1 | AT1G24020 | 51.678 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 2.71e-55 | 171 |
MS.gene68338.t1 | AT1G70830 | 34.868 | 152 | 96 | 2 | 2 | 151 | 19 | 169 | 2.11e-22 | 88.2 |
MS.gene68338.t1 | AT1G70830 | 34.868 | 152 | 96 | 2 | 2 | 151 | 19 | 169 | 3.89e-22 | 88.2 |
MS.gene68338.t1 | AT1G70840 | 36.667 | 150 | 92 | 2 | 4 | 151 | 19 | 167 | 4.13e-22 | 87.4 |
MS.gene68338.t1 | AT1G70830 | 34.868 | 152 | 96 | 2 | 2 | 151 | 19 | 169 | 1.43e-21 | 87.8 |
MS.gene68338.t1 | AT1G70850 | 34.416 | 154 | 98 | 2 | 2 | 153 | 6 | 158 | 1.93e-21 | 87.0 |
MS.gene68338.t1 | AT1G70830 | 34.868 | 152 | 96 | 2 | 2 | 151 | 19 | 169 | 3.52e-21 | 88.2 |
MS.gene68338.t1 | AT1G70830 | 33.333 | 150 | 97 | 2 | 4 | 151 | 183 | 331 | 1.72e-19 | 83.6 |
MS.gene68338.t1 | AT1G70850 | 34.416 | 154 | 98 | 2 | 2 | 153 | 6 | 158 | 6.02e-21 | 87.0 |
MS.gene68338.t1 | AT1G70850 | 33.813 | 139 | 89 | 2 | 15 | 151 | 175 | 312 | 2.28e-17 | 77.4 |
MS.gene68338.t1 | AT1G70850 | 34.416 | 154 | 98 | 2 | 2 | 153 | 6 | 158 | 6.02e-21 | 87.0 |
MS.gene68338.t1 | AT1G70850 | 33.813 | 139 | 89 | 2 | 15 | 151 | 175 | 312 | 2.28e-17 | 77.4 |
MS.gene68338.t1 | AT1G70890 | 36.184 | 152 | 94 | 3 | 2 | 151 | 4 | 154 | 7.39e-21 | 83.6 |
MS.gene68338.t1 | AT1G70830 | 33.333 | 150 | 97 | 2 | 4 | 151 | 136 | 284 | 8.27e-20 | 83.6 |
MS.gene68338.t1 | AT1G70830 | 36.471 | 85 | 52 | 1 | 69 | 151 | 38 | 122 | 9.82e-11 | 58.9 |
MS.gene68338.t1 | AT5G28010 | 31.579 | 152 | 101 | 2 | 4 | 153 | 14 | 164 | 2.62e-19 | 79.7 |
MS.gene68338.t1 | AT5G28010 | 31.579 | 152 | 101 | 2 | 4 | 153 | 14 | 164 | 2.62e-19 | 79.7 |
MS.gene68338.t1 | AT5G28000 | 32.237 | 152 | 100 | 2 | 4 | 153 | 12 | 162 | 5.46e-18 | 76.3 |
MS.gene68338.t1 | AT1G70880 | 31.169 | 154 | 103 | 3 | 2 | 153 | 5 | 157 | 4.68e-17 | 73.9 |
MS.gene68338.t1 | AT1G14930 | 28.289 | 152 | 102 | 3 | 3 | 151 | 1 | 148 | 7.33e-14 | 65.5 |
MS.gene68338.t1 | AT1G35260 | 31.081 | 148 | 96 | 4 | 9 | 153 | 6 | 150 | 2.50e-13 | 63.9 |
MS.gene68338.t1 | AT3G26460 | 25.333 | 150 | 110 | 2 | 3 | 151 | 1 | 149 | 7.23e-11 | 57.4 |
Find 35 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGTCATGTGGGAAGGCCTT+AGG | 0.333006 | 5.2:+25563673 | None:intergenic |
AATAGTTGTAGAATCCCTTA+TGG | 0.338562 | 5.2:+25563699 | None:intergenic |
GCAAAATCTTTGACAATAGT+TGG | 0.338740 | 5.2:+25562908 | None:intergenic |
ATCCCCTTCAATTATACAAT+AGG | 0.381348 | 5.2:+25563045 | None:intergenic |
ATCTCACATCCTTCTCCAAC+TGG | 0.381866 | 5.2:+25562977 | None:intergenic |
CCTTGAATGATTTGTAGTAT+TGG | 0.436050 | 5.2:+25563017 | None:intergenic |
CCAATACTACAAATCATTCA+AGG | 0.446219 | 5.2:-25563017 | MS.gene68338:CDS |
AGTCTAATGCAGACAAGTAC+TGG | 0.454231 | 5.2:-25563726 | MS.gene68338:CDS |
AGTCATGTGGGAAGGCCTTA+GGG | 0.459268 | 5.2:+25563674 | None:intergenic |
GAGAAGGATGTGAGATGAAA+TGG | 0.470943 | 5.2:-25562970 | MS.gene68338:CDS |
ACAAGTACTGGCAAACCATA+AGG | 0.476885 | 5.2:-25563714 | MS.gene68338:CDS |
GAGGGTGATGGTAAAGCTCC+TGG | 0.482745 | 5.2:-25563631 | MS.gene68338:CDS |
TCTTTGACAATAGTTGGATC+AGG | 0.487708 | 5.2:+25562914 | None:intergenic |
GTGAAGTGGCGGATAGAGCC+AGG | 0.488549 | 5.2:+25563613 | None:intergenic |
GCAACCTATTGTATAATTGA+AGG | 0.505768 | 5.2:-25563049 | MS.gene68338:CDS |
AAAAGCATTGAGGTCCTTGA+GGG | 0.507266 | 5.2:-25563649 | MS.gene68338:CDS |
CAAGTACTGGCAAACCATAA+GGG | 0.509772 | 5.2:-25563713 | MS.gene68338:CDS |
ATCATGGCTGTAGCTCTTCG+TGG | 0.517791 | 5.2:-25563775 | MS.gene68338:CDS |
CAACCTATTGTATAATTGAA+GGG | 0.524179 | 5.2:-25563048 | MS.gene68338:CDS |
TACCTTCAGCATAAGTGAAG+TGG | 0.548909 | 5.2:+25563599 | None:intergenic |
TGCAGTCAAGAACTTCATTG+AGG | 0.557320 | 5.2:-25562888 | MS.gene68338:CDS |
CAAAAGCATTGAGGTCCTTG+AGG | 0.558857 | 5.2:-25563650 | MS.gene68338:CDS |
CGCCACTTCACTTATGCTGA+AGG | 0.559188 | 5.2:-25563601 | MS.gene68338:intron |
ATTGAGGTCCTTGAGGGTGA+TGG | 0.560374 | 5.2:-25563643 | MS.gene68338:CDS |
CATCTTGCTGTAACACCAGT+TGG | 0.560972 | 5.2:-25562992 | MS.gene68338:CDS |
CAATACTACAAATCATTCAA+GGG | 0.584423 | 5.2:-25563016 | MS.gene68338:CDS |
GCTGTAACACCAGTTGGAGA+AGG | 0.585512 | 5.2:-25562986 | MS.gene68338:CDS |
AACCTATTGTATAATTGAAG+GGG | 0.589185 | 5.2:-25563047 | MS.gene68338:CDS |
GAGCTTTACCATCACCCTCA+AGG | 0.617751 | 5.2:+25563635 | None:intergenic |
ATGCTGCTGATGATGAAAAG+AGG | 0.618271 | 5.2:-25563075 | MS.gene68338:CDS |
AGTCAAGAACTTCATTGAGG+TGG | 0.628959 | 5.2:-25562885 | MS.gene68338:CDS |
CTTCAGCATAAGTGAAGTGG+CGG | 0.638511 | 5.2:+25563602 | None:intergenic |
AAAACTCGCGAAGTCTTCGA+CGG | 0.651660 | 5.2:-25563107 | MS.gene68338:CDS |
AGCTCTTCGTGGAAAGCTAG+AGG | 0.660101 | 5.2:-25563764 | MS.gene68338:CDS |
ACATGACTACAAAAGCATTG+AGG | 0.674108 | 5.2:-25563659 | MS.gene68338:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGATGAAATTCAATAAATA+AGG | - | chr5.2:25563219-25563238 | MS.gene68338:intron | 15.0% |
!! | TGATGAAATTCAATAAATAA+GGG | - | chr5.2:25563220-25563239 | MS.gene68338:intron | 15.0% |
!! | TTGATCCTACAATATATTAT+AGG | + | chr5.2:25563503-25563522 | None:intergenic | 20.0% |
!!! | AATAAATAAGGGTATATCAA+TGG | - | chr5.2:25563231-25563250 | MS.gene68338:intron | 20.0% |
! | AACCTATTGTATAATTGAAG+GGG | - | chr5.2:25563581-25563600 | MS.gene68338:intron | 25.0% |
! | AATTTAGAGACTTTCTTCTT+TGG | - | chr5.2:25563053-25563072 | MS.gene68338:CDS | 25.0% |
! | CAACCTATTGTATAATTGAA+GGG | - | chr5.2:25563580-25563599 | MS.gene68338:intron | 25.0% |
! | CAATACTACAAATCATTCAA+GGG | - | chr5.2:25563612-25563631 | MS.gene68338:CDS | 25.0% |
! | TCATACATTCTTATCTGATT+TGG | - | chr5.2:25563474-25563493 | MS.gene68338:intron | 25.0% |
! | TGTTAAATCGATGATTAAAG+AGG | - | chr5.2:25563318-25563337 | MS.gene68338:intron | 25.0% |
AATAGTTGTAGAATCCCTTA+TGG | + | chr5.2:25562932-25562951 | None:intergenic | 30.0% | |
ATCCCCTTCAATTATACAAT+AGG | + | chr5.2:25563586-25563605 | None:intergenic | 30.0% | |
CCAATACTACAAATCATTCA+AGG | - | chr5.2:25563611-25563630 | MS.gene68338:CDS | 30.0% | |
GCAAAATCTTTGACAATAGT+TGG | + | chr5.2:25563723-25563742 | None:intergenic | 30.0% | |
GCAACCTATTGTATAATTGA+AGG | - | chr5.2:25563579-25563598 | MS.gene68338:intron | 30.0% | |
! | CCTTGAATGATTTGTAGTAT+TGG | + | chr5.2:25563614-25563633 | None:intergenic | 30.0% |
! | TTCTACAACTATTTTCCCTA+AGG | - | chr5.2:25562939-25562958 | MS.gene68338:CDS | 30.0% |
!! | TACATTCTTATCTGATTTGG+TGG | - | chr5.2:25563477-25563496 | MS.gene68338:intron | 30.0% |
AAAGCGATACATGAATCTCT+TGG | + | chr5.2:25563411-25563430 | None:intergenic | 35.0% | |
ATTAAAGAGGTAGAGACACT+AGG | - | chr5.2:25563331-25563350 | MS.gene68338:intron | 35.0% | |
CTTCTTTGGTAGAGAATGAA+GGG | - | chr5.2:25563067-25563086 | MS.gene68338:CDS | 35.0% | |
GGTGGCCTATAATATATTGT+AGG | - | chr5.2:25563495-25563514 | MS.gene68338:intron | 35.0% | |
GTCAAATGCAACGAATATTG+TGG | + | chr5.2:25563174-25563193 | None:intergenic | 35.0% | |
TCTTCTTTGGTAGAGAATGA+AGG | - | chr5.2:25563066-25563085 | MS.gene68338:CDS | 35.0% | |
TCTTTGACAATAGTTGGATC+AGG | + | chr5.2:25563717-25563736 | None:intergenic | 35.0% | |
! | CAATGCTTTTGTAGTCATGT+GGG | + | chr5.2:25562969-25562988 | None:intergenic | 35.0% |
! | TCAATGCTTTTGTAGTCATG+TGG | + | chr5.2:25562970-25562989 | None:intergenic | 35.0% |
!! | ACATGACTACAAAAGCATTG+AGG | - | chr5.2:25562969-25562988 | MS.gene68338:CDS | 35.0% |
!!! | TAGAGAATGAAGGGCATTTT+GGG | - | chr5.2:25563076-25563095 | MS.gene68338:CDS | 35.0% |
AGTCAAGAACTTCATTGAGG+TGG | - | chr5.2:25563743-25563762 | MS.gene68338:CDS | 40.0% | |
AGTCTAATGCAGACAAGTAC+TGG | - | chr5.2:25562902-25562921 | MS.gene68338:CDS | 40.0% | |
GAGAAGGATGTGAGATGAAA+TGG | - | chr5.2:25563658-25563677 | MS.gene68338:CDS | 40.0% | |
TACCTTCAGCATAAGTGAAG+TGG | + | chr5.2:25563032-25563051 | None:intergenic | 40.0% | |
TGCAGTCAAGAACTTCATTG+AGG | - | chr5.2:25563740-25563759 | MS.gene68338:CDS | 40.0% | |
! | ATGCTGCTGATGATGAAAAG+AGG | - | chr5.2:25563553-25563572 | MS.gene68338:intron | 40.0% |
!! | AAAAGCATTGAGGTCCTTGA+GGG | - | chr5.2:25562979-25562998 | MS.gene68338:CDS | 40.0% |
!! | ACAAGTACTGGCAAACCATA+AGG | - | chr5.2:25562914-25562933 | MS.gene68338:CDS | 40.0% |
!! | CAAGTACTGGCAAACCATAA+GGG | - | chr5.2:25562915-25562934 | MS.gene68338:CDS | 40.0% |
!!! | GTAGAGAATGAAGGGCATTT+TGG | - | chr5.2:25563075-25563094 | MS.gene68338:CDS | 40.0% |
AAAACTCGCGAAGTCTTCGA+CGG | - | chr5.2:25563521-25563540 | MS.gene68338:intron | 45.0% | |
ATCTCACATCCTTCTCCAAC+TGG | + | chr5.2:25563654-25563673 | None:intergenic | 45.0% | |
CATGAATCTCTTGGAACGCT+AGG | + | chr5.2:25563402-25563421 | None:intergenic | 45.0% | |
CTTCAGCATAAGTGAAGTGG+CGG | + | chr5.2:25563029-25563048 | None:intergenic | 45.0% | |
! | CATCTTGCTGTAACACCAGT+TGG | - | chr5.2:25563636-25563655 | MS.gene68338:CDS | 45.0% |
! | GCTTTTGTAGTCATGTGGGA+AGG | + | chr5.2:25562965-25562984 | None:intergenic | 45.0% |
!! | CAAAAGCATTGAGGTCCTTG+AGG | - | chr5.2:25562978-25562997 | MS.gene68338:CDS | 45.0% |
AGCTCTTCGTGGAAAGCTAG+AGG | - | chr5.2:25562864-25562883 | MS.gene68338:CDS | 50.0% | |
AGTCATGTGGGAAGGCCTTA+GGG | + | chr5.2:25562957-25562976 | None:intergenic | 50.0% | |
ATTGAGGTCCTTGAGGGTGA+TGG | - | chr5.2:25562985-25563004 | MS.gene68338:CDS | 50.0% | |
CGCCACTTCACTTATGCTGA+AGG | - | chr5.2:25563027-25563046 | MS.gene68338:CDS | 50.0% | |
GAGCTTTACCATCACCCTCA+AGG | + | chr5.2:25562996-25563015 | None:intergenic | 50.0% | |
GCTGTAACACCAGTTGGAGA+AGG | - | chr5.2:25563642-25563661 | MS.gene68338:CDS | 50.0% | |
TAGTCATGTGGGAAGGCCTT+AGG | + | chr5.2:25562958-25562977 | None:intergenic | 50.0% | |
AACGCTAGGCACTAGTGCAG+TGG | + | chr5.2:25563388-25563407 | None:intergenic | 55.0% | |
! | GAGGGTGATGGTAAAGCTCC+TGG | - | chr5.2:25562997-25563016 | MS.gene68338:CDS | 55.0% |
!! | GTGAAGTGGCGGATAGAGCC+AGG | + | chr5.2:25563018-25563037 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 25562856 | 25563794 | 25562856 | ID=MS.gene68338 |
chr5.2 | mRNA | 25562856 | 25563794 | 25562856 | ID=MS.gene68338.t1;Parent=MS.gene68338 |
chr5.2 | exon | 25563602 | 25563794 | 25563602 | ID=MS.gene68338.t1.exon1;Parent=MS.gene68338.t1 |
chr5.2 | CDS | 25563602 | 25563794 | 25563602 | ID=cds.MS.gene68338.t1;Parent=MS.gene68338.t1 |
chr5.2 | exon | 25562856 | 25563133 | 25562856 | ID=MS.gene68338.t1.exon2;Parent=MS.gene68338.t1 |
chr5.2 | CDS | 25562856 | 25563133 | 25562856 | ID=cds.MS.gene68338.t1;Parent=MS.gene68338.t1 |
Gene Sequence |
Protein sequence |