Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45085.t1 | XP_003613297.1 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 1.70E-80 | 308.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45085.t1 | Q93VR4 | 51.7 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 3.6e-42 | 172.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45085.t1 | B7FKA0 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 1.2e-80 | 308.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene45085 | 0.858885 | 6.06E-63 | -1.69E-46 |
MS.gene049346 | MS.gene45085 | 0.807892 | 4.05E-50 | -1.69E-46 |
MS.gene049758 | MS.gene45085 | 0.821779 | 3.37E-53 | -1.69E-46 |
MS.gene050020 | MS.gene45085 | 0.811522 | 6.71E-51 | -1.69E-46 |
MS.gene050099 | MS.gene45085 | 0.801429 | 9.04E-49 | -1.69E-46 |
MS.gene050128 | MS.gene45085 | 0.854679 | 1.05E-61 | -1.69E-46 |
MS.gene050206 | MS.gene45085 | 0.808723 | 2.69E-50 | -1.69E-46 |
MS.gene050301 | MS.gene45085 | 0.821838 | 3.26E-53 | -1.69E-46 |
MS.gene050584 | MS.gene45085 | 0.846281 | 2.40E-59 | -1.69E-46 |
MS.gene050585 | MS.gene45085 | 0.811637 | 6.34E-51 | -1.69E-46 |
MS.gene050586 | MS.gene45085 | 0.836226 | 1.06E-56 | -1.69E-46 |
MS.gene050587 | MS.gene45085 | 0.805315 | 1.42E-49 | -1.69E-46 |
MS.gene050762 | MS.gene45085 | 0.819317 | 1.24E-52 | -1.69E-46 |
MS.gene050763 | MS.gene45085 | 0.820775 | 5.74E-53 | -1.69E-46 |
MS.gene05143 | MS.gene45085 | 0.809528 | 1.81E-50 | -1.69E-46 |
MS.gene051626 | MS.gene45085 | 0.854832 | 9.47E-62 | -1.69E-46 |
MS.gene051789 | MS.gene45085 | 0.88142 | 2.44E-70 | -1.69E-46 |
MS.gene051860 | MS.gene45085 | 0.820312 | 7.33E-53 | -1.69E-46 |
MS.gene052142 | MS.gene45085 | 0.817594 | 3.04E-52 | -1.69E-46 |
MS.gene052178 | MS.gene45085 | 0.869312 | 3.40E-66 | -1.69E-46 |
MS.gene052207 | MS.gene45085 | 0.804729 | 1.88E-49 | -1.69E-46 |
MS.gene052337 | MS.gene45085 | 0.814016 | 1.91E-51 | -1.69E-46 |
MS.gene052967 | MS.gene45085 | 0.855441 | 6.29E-62 | -1.69E-46 |
MS.gene053074 | MS.gene45085 | 0.892226 | 1.93E-74 | -1.69E-46 |
MS.gene053204 | MS.gene45085 | 0.86629 | 3.18E-65 | -1.69E-46 |
MS.gene053557 | MS.gene45085 | 0.80687 | 6.67E-50 | -1.69E-46 |
MS.gene053836 | MS.gene45085 | 0.82682 | 2.20E-54 | -1.69E-46 |
MS.gene054010 | MS.gene45085 | 0.847302 | 1.26E-59 | -1.69E-46 |
MS.gene054011 | MS.gene45085 | 0.854021 | 1.62E-61 | -1.69E-46 |
MS.gene054012 | MS.gene45085 | 0.845102 | 5.01E-59 | -1.69E-46 |
MS.gene054013 | MS.gene45085 | 0.850203 | 1.98E-60 | -1.69E-46 |
MS.gene054184 | MS.gene45085 | 0.878179 | 3.46E-69 | -1.69E-46 |
MS.gene054185 | MS.gene45085 | 0.877714 | 5.03E-69 | -1.69E-46 |
MS.gene054214 | MS.gene45085 | 0.855033 | 8.27E-62 | -1.69E-46 |
MS.gene05456 | MS.gene45085 | 0.840216 | 9.94E-58 | -1.69E-46 |
MS.gene054596 | MS.gene45085 | 0.850059 | 2.17E-60 | -1.69E-46 |
MS.gene054618 | MS.gene45085 | 0.815494 | 8.98E-52 | -1.69E-46 |
MS.gene055133 | MS.gene45085 | 0.847688 | 9.87E-60 | -1.69E-46 |
MS.gene055207 | MS.gene45085 | 0.878202 | 3.40E-69 | -1.69E-46 |
MS.gene055277 | MS.gene45085 | 0.805748 | 1.15E-49 | -1.69E-46 |
MS.gene055422 | MS.gene45085 | 0.811621 | 6.39E-51 | -1.69E-46 |
MS.gene055428 | MS.gene45085 | 0.802533 | 5.36E-49 | -1.69E-46 |
MS.gene055604 | MS.gene45085 | 0.854749 | 1.00E-61 | -1.69E-46 |
MS.gene056069 | MS.gene45085 | -0.809807 | 1.58E-50 | -1.69E-46 |
MS.gene056191 | MS.gene45085 | 0.813158 | 2.95E-51 | -1.69E-46 |
MS.gene056772 | MS.gene45085 | 0.800988 | 1.11E-48 | -1.69E-46 |
MS.gene056902 | MS.gene45085 | 0.806269 | 8.93E-50 | -1.69E-46 |
MS.gene057393 | MS.gene45085 | 0.80391 | 2.78E-49 | -1.69E-46 |
MS.gene057752 | MS.gene45085 | 0.809236 | 2.09E-50 | -1.69E-46 |
MS.gene057754 | MS.gene45085 | 0.836624 | 8.39E-57 | -1.69E-46 |
MS.gene057794 | MS.gene45085 | 0.814944 | 1.19E-51 | -1.69E-46 |
MS.gene057796 | MS.gene45085 | 0.800674 | 1.29E-48 | -1.69E-46 |
MS.gene058002 | MS.gene45085 | 0.814234 | 1.71E-51 | -1.69E-46 |
MS.gene05811 | MS.gene45085 | 0.832188 | 1.09E-55 | -1.69E-46 |
MS.gene058168 | MS.gene45085 | 0.833056 | 6.64E-56 | -1.69E-46 |
MS.gene058236 | MS.gene45085 | 0.807885 | 4.06E-50 | -1.69E-46 |
MS.gene059006 | MS.gene45085 | 0.868837 | 4.85E-66 | -1.69E-46 |
MS.gene05907 | MS.gene45085 | 0.802893 | 4.52E-49 | -1.69E-46 |
MS.gene059124 | MS.gene45085 | 0.833935 | 4.01E-56 | -1.69E-46 |
MS.gene059228 | MS.gene45085 | 0.859776 | 3.27E-63 | -1.69E-46 |
MS.gene059294 | MS.gene45085 | 0.832037 | 1.19E-55 | -1.69E-46 |
MS.gene059421 | MS.gene45085 | 0.815303 | 9.90E-52 | -1.69E-46 |
MS.gene059518 | MS.gene45085 | 0.827882 | 1.22E-54 | -1.69E-46 |
MS.gene05984 | MS.gene45085 | 0.815043 | 1.13E-51 | -1.69E-46 |
MS.gene059894 | MS.gene45085 | 0.810419 | 1.16E-50 | -1.69E-46 |
MS.gene059974 | MS.gene45085 | 0.849783 | 2.59E-60 | -1.69E-46 |
MS.gene060005 | MS.gene45085 | 0.844967 | 5.45E-59 | -1.69E-46 |
MS.gene060320 | MS.gene45085 | 0.806144 | 9.49E-50 | -1.69E-46 |
MS.gene06037 | MS.gene45085 | 0.84367 | 1.22E-58 | -1.69E-46 |
MS.gene060476 | MS.gene45085 | 0.838859 | 2.24E-57 | -1.69E-46 |
MS.gene061049 | MS.gene45085 | 0.836494 | 9.06E-57 | -1.69E-46 |
MS.gene061112 | MS.gene45085 | 0.814643 | 1.39E-51 | -1.69E-46 |
MS.gene061113 | MS.gene45085 | 0.822115 | 2.81E-53 | -1.69E-46 |
MS.gene061265 | MS.gene45085 | 0.815849 | 7.49E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene45085 | MS.gene022840 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45085.t1 | MTR_5g035010 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.75e-110 | 310 |
MS.gene45085.t1 | MTR_8g012550 | 29.139 | 151 | 106 | 1 | 1 | 151 | 1 | 150 | 1.09e-19 | 80.5 |
MS.gene45085.t1 | MTR_1g030810 | 31.373 | 153 | 98 | 5 | 3 | 151 | 1 | 150 | 1.76e-14 | 67.0 |
MS.gene45085.t1 | MTR_1g030820 | 30.323 | 155 | 97 | 6 | 3 | 151 | 1 | 150 | 3.17e-13 | 63.5 |
MS.gene45085.t1 | MTR_1g031640 | 29.630 | 135 | 86 | 5 | 9 | 141 | 7 | 134 | 5.12e-13 | 62.8 |
MS.gene45085.t1 | MTR_1g030840 | 31.852 | 135 | 82 | 4 | 3 | 130 | 1 | 132 | 3.96e-12 | 60.8 |
MS.gene45085.t1 | MTR_8g045520 | 26.490 | 151 | 107 | 4 | 3 | 151 | 1 | 149 | 5.26e-12 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45085.t1 | AT1G24020 | 51.678 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 8.77e-56 | 172 |
MS.gene45085.t1 | AT1G24020 | 51.678 | 149 | 72 | 0 | 3 | 151 | 1 | 149 | 8.77e-56 | 172 |
MS.gene45085.t1 | AT1G70830 | 34.211 | 152 | 97 | 2 | 2 | 151 | 19 | 169 | 8.41e-22 | 86.7 |
MS.gene45085.t1 | AT1G70830 | 34.211 | 152 | 97 | 2 | 2 | 151 | 19 | 169 | 1.55e-21 | 86.7 |
MS.gene45085.t1 | AT1G70840 | 36.000 | 150 | 93 | 2 | 4 | 151 | 19 | 167 | 1.81e-21 | 85.5 |
MS.gene45085.t1 | AT1G70830 | 34.211 | 152 | 97 | 2 | 2 | 151 | 19 | 169 | 4.73e-21 | 86.3 |
MS.gene45085.t1 | AT1G70850 | 33.766 | 154 | 99 | 2 | 2 | 153 | 6 | 158 | 8.10e-21 | 85.5 |
MS.gene45085.t1 | AT1G70830 | 34.211 | 152 | 97 | 2 | 2 | 151 | 19 | 169 | 1.34e-20 | 86.7 |
MS.gene45085.t1 | AT1G70830 | 33.333 | 150 | 97 | 2 | 4 | 151 | 183 | 331 | 3.16e-19 | 82.8 |
MS.gene45085.t1 | AT1G70850 | 33.766 | 154 | 99 | 2 | 2 | 153 | 6 | 158 | 2.64e-20 | 85.5 |
MS.gene45085.t1 | AT1G70850 | 33.094 | 139 | 90 | 2 | 15 | 151 | 175 | 312 | 9.22e-17 | 75.9 |
MS.gene45085.t1 | AT1G70850 | 33.766 | 154 | 99 | 2 | 2 | 153 | 6 | 158 | 2.64e-20 | 85.5 |
MS.gene45085.t1 | AT1G70850 | 33.094 | 139 | 90 | 2 | 15 | 151 | 175 | 312 | 9.22e-17 | 75.9 |
MS.gene45085.t1 | AT1G70890 | 34.868 | 152 | 96 | 3 | 2 | 151 | 4 | 154 | 1.47e-19 | 80.5 |
MS.gene45085.t1 | AT1G70830 | 33.333 | 150 | 97 | 2 | 4 | 151 | 136 | 284 | 1.49e-19 | 83.2 |
MS.gene45085.t1 | AT5G28010 | 31.579 | 152 | 101 | 2 | 4 | 153 | 14 | 164 | 3.65e-19 | 79.3 |
MS.gene45085.t1 | AT5G28010 | 31.579 | 152 | 101 | 2 | 4 | 153 | 14 | 164 | 3.65e-19 | 79.3 |
MS.gene45085.t1 | AT5G28000 | 30.921 | 152 | 102 | 2 | 4 | 153 | 12 | 162 | 1.03e-16 | 73.2 |
MS.gene45085.t1 | AT1G70880 | 30.519 | 154 | 104 | 3 | 2 | 153 | 5 | 157 | 2.35e-16 | 72.0 |
MS.gene45085.t1 | AT1G14930 | 27.152 | 151 | 105 | 3 | 3 | 151 | 1 | 148 | 9.00e-13 | 62.4 |
MS.gene45085.t1 | AT1G35260 | 30.201 | 149 | 98 | 4 | 8 | 153 | 5 | 150 | 9.63e-13 | 62.4 |
MS.gene45085.t1 | AT1G23130 | 30.263 | 152 | 102 | 3 | 4 | 153 | 9 | 158 | 2.65e-12 | 61.2 |
MS.gene45085.t1 | AT1G23120 | 27.891 | 147 | 92 | 5 | 9 | 154 | 7 | 140 | 6.44e-11 | 57.4 |
Find 33 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGTCATGTGGGAAGGCCTT+AGG | 0.333006 | 5.3:+23959578 | None:intergenic |
AATAGTTGTAGAATCCCTTA+TGG | 0.338562 | 5.3:+23959604 | None:intergenic |
GCAAAATCTTTGACAATAGT+TGG | 0.338740 | 5.3:+23958808 | None:intergenic |
ATCTCACATCCTTCTCCAAC+TGG | 0.381866 | 5.3:+23958877 | None:intergenic |
GCAACCTATTGTATAATTGC+AGG | 0.424800 | 5.3:-23958949 | MS.gene45085:CDS |
CCTTGAATGATTTGTAGTAT+TGG | 0.436050 | 5.3:+23958917 | None:intergenic |
CCAATACTACAAATCATTCA+AGG | 0.446219 | 5.3:-23958917 | MS.gene45085:CDS |
ATCTCCTGCAATTATACAAT+AGG | 0.447249 | 5.3:+23958945 | None:intergenic |
AGTCTAATGCAGACAAGTAC+TGG | 0.454231 | 5.3:-23959631 | MS.gene45085:CDS |
AGTCATGTGGGAAGGCCTTA+GGG | 0.459268 | 5.3:+23959579 | None:intergenic |
GAGAAGGATGTGAGATGAAA+TGG | 0.470943 | 5.3:-23958870 | MS.gene45085:CDS |
ACAAGTACTGGCAAACCATA+AGG | 0.476885 | 5.3:-23959619 | MS.gene45085:CDS |
GAGGGTGATGGTAAAGCTCC+TGG | 0.482745 | 5.3:-23959536 | MS.gene45085:CDS |
TCTTTGACAATAGTTGGATC+AGG | 0.487708 | 5.3:+23958814 | None:intergenic |
GTGAAGTGGCGGATAGAGCC+AGG | 0.488549 | 5.3:+23959518 | None:intergenic |
AAAAGCATTGAGGTCCTTGA+GGG | 0.507266 | 5.3:-23959554 | MS.gene45085:CDS |
CAAGTACTGGCAAACCATAA+GGG | 0.509772 | 5.3:-23959618 | MS.gene45085:CDS |
ATCATGGCTGTAGCTCTTCG+TGG | 0.517791 | 5.3:-23959680 | MS.gene45085:CDS |
TACCTTCAGCATAAGTGAAG+TGG | 0.548909 | 5.3:+23959504 | None:intergenic |
TGCAGTCAAGAACTTCATTG+AGG | 0.557320 | 5.3:-23958788 | MS.gene45085:CDS |
CAAAAGCATTGAGGTCCTTG+AGG | 0.558857 | 5.3:-23959555 | MS.gene45085:CDS |
CGCCACTTCACTTATGCTGA+AGG | 0.559188 | 5.3:-23959506 | MS.gene45085:intron |
ATTGAGGTCCTTGAGGGTGA+TGG | 0.560374 | 5.3:-23959548 | MS.gene45085:CDS |
CATCTTGCTGTAACACCAGT+TGG | 0.560972 | 5.3:-23958892 | MS.gene45085:CDS |
CAATACTACAAATCATTCAA+GGG | 0.584423 | 5.3:-23958916 | MS.gene45085:CDS |
GCTGTAACACCAGTTGGAGA+AGG | 0.585512 | 5.3:-23958886 | MS.gene45085:CDS |
GAGCTTTACCATCACCCTCA+AGG | 0.617751 | 5.3:+23959540 | None:intergenic |
ATGCTGCTGATGATGAAAAG+AGG | 0.618271 | 5.3:-23958975 | MS.gene45085:CDS |
AGTCAAGAACTTCATTGAGG+TGG | 0.628959 | 5.3:-23958785 | MS.gene45085:CDS |
ACAACTCGCAAAGTCTTCGA+CGG | 0.637120 | 5.3:-23959007 | MS.gene45085:CDS |
CTTCAGCATAAGTGAAGTGG+CGG | 0.638511 | 5.3:+23959507 | None:intergenic |
AGCTCTTCGTGGAAAGCTAG+AGG | 0.660101 | 5.3:-23959669 | MS.gene45085:CDS |
ACATGACTACAAAAGCATTG+AGG | 0.674108 | 5.3:-23959564 | MS.gene45085:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGATGAAATTCAATAAATA+AGG | - | chr5.3:23959130-23959149 | MS.gene45085:intron | 15.0% |
!! | TGATGAAATTCAATAAATAA+GGG | - | chr5.3:23959131-23959150 | MS.gene45085:intron | 15.0% |
!!! | AATAAATAAGGGTATATCAA+TGG | - | chr5.3:23959142-23959161 | MS.gene45085:intron | 20.0% |
! | AAAGTGAGTATTATGTATGT+CGG | + | chr5.3:23959058-23959077 | None:intergenic | 25.0% |
! | AATTTAGAGACTTTCTTCTT+TGG | - | chr5.3:23958953-23958972 | MS.gene45085:CDS | 25.0% |
! | CAATACTACAAATCATTCAA+GGG | - | chr5.3:23959517-23959536 | MS.gene45085:CDS | 25.0% |
! | CGATGATTAAAATGAGATAT+AGG | - | chr5.3:23959241-23959260 | MS.gene45085:intron | 25.0% |
! | TCATACATTCTTATCTGATT+TGG | - | chr5.3:23959384-23959403 | MS.gene45085:intron | 25.0% |
AATAGTTGTAGAATCCCTTA+TGG | + | chr5.3:23958832-23958851 | None:intergenic | 30.0% | |
ATCTCCTGCAATTATACAAT+AGG | + | chr5.3:23959491-23959510 | None:intergenic | 30.0% | |
CCAATACTACAAATCATTCA+AGG | - | chr5.3:23959516-23959535 | MS.gene45085:CDS | 30.0% | |
GCAAAATCTTTGACAATAGT+TGG | + | chr5.3:23959628-23959647 | None:intergenic | 30.0% | |
! | CCTTGAATGATTTGTAGTAT+TGG | + | chr5.3:23959519-23959538 | None:intergenic | 30.0% |
! | TTCTACAACTATTTTCCCTA+AGG | - | chr5.3:23958839-23958858 | MS.gene45085:CDS | 30.0% |
!! | TACATTCTTATCTGATTTGG+TGG | - | chr5.3:23959387-23959406 | MS.gene45085:intron | 30.0% |
AAAGCGATACATGAATCTCT+TGG | + | chr5.3:23959321-23959340 | None:intergenic | 35.0% | |
CTTCTTTGGTAGAGAATGAA+GGG | - | chr5.3:23958967-23958986 | MS.gene45085:CDS | 35.0% | |
GAGTTGTGATCCTACAATAT+AGG | + | chr5.3:23959413-23959432 | None:intergenic | 35.0% | |
GCAACCTATTGTATAATTGC+AGG | - | chr5.3:23959484-23959503 | MS.gene45085:intron | 35.0% | |
GTCAAATGCAACGAATATTG+TGG | + | chr5.3:23959084-23959103 | None:intergenic | 35.0% | |
TCTTCTTTGGTAGAGAATGA+AGG | - | chr5.3:23958966-23958985 | MS.gene45085:CDS | 35.0% | |
TCTTTGACAATAGTTGGATC+AGG | + | chr5.3:23959622-23959641 | None:intergenic | 35.0% | |
! | CAATGCTTTTGTAGTCATGT+GGG | + | chr5.3:23958869-23958888 | None:intergenic | 35.0% |
! | TCAATGCTTTTGTAGTCATG+TGG | + | chr5.3:23958870-23958889 | None:intergenic | 35.0% |
!! | ACATGACTACAAAAGCATTG+AGG | - | chr5.3:23958869-23958888 | MS.gene45085:CDS | 35.0% |
!!! | TAGAGAATGAAGGGCATTTT+GGG | - | chr5.3:23958976-23958995 | MS.gene45085:CDS | 35.0% |
AGTCAAGAACTTCATTGAGG+TGG | - | chr5.3:23959648-23959667 | MS.gene45085:CDS | 40.0% | |
AGTCTAATGCAGACAAGTAC+TGG | - | chr5.3:23958802-23958821 | MS.gene45085:CDS | 40.0% | |
GAGAAGGATGTGAGATGAAA+TGG | - | chr5.3:23959563-23959582 | MS.gene45085:CDS | 40.0% | |
TACCTTCAGCATAAGTGAAG+TGG | + | chr5.3:23958932-23958951 | None:intergenic | 40.0% | |
TGCAGTCAAGAACTTCATTG+AGG | - | chr5.3:23959645-23959664 | MS.gene45085:CDS | 40.0% | |
! | ATGCTGCTGATGATGAAAAG+AGG | - | chr5.3:23959458-23959477 | MS.gene45085:intron | 40.0% |
!! | AAAAGCATTGAGGTCCTTGA+GGG | - | chr5.3:23958879-23958898 | MS.gene45085:CDS | 40.0% |
!! | ACAAGTACTGGCAAACCATA+AGG | - | chr5.3:23958814-23958833 | MS.gene45085:CDS | 40.0% |
!! | CAAGTACTGGCAAACCATAA+GGG | - | chr5.3:23958815-23958834 | MS.gene45085:CDS | 40.0% |
!! | GATTTGGTGGCCTATATTGT+AGG | - | chr5.3:23959400-23959419 | MS.gene45085:intron | 40.0% |
!!! | GTAGAGAATGAAGGGCATTT+TGG | - | chr5.3:23958975-23958994 | MS.gene45085:CDS | 40.0% |
ACAACTCGCAAAGTCTTCGA+CGG | - | chr5.3:23959426-23959445 | MS.gene45085:intron | 45.0% | |
ATCTCACATCCTTCTCCAAC+TGG | + | chr5.3:23959559-23959578 | None:intergenic | 45.0% | |
CATGAATCTCTTGGAACGCT+AGG | + | chr5.3:23959312-23959331 | None:intergenic | 45.0% | |
CTTCAGCATAAGTGAAGTGG+CGG | + | chr5.3:23958929-23958948 | None:intergenic | 45.0% | |
! | CATCTTGCTGTAACACCAGT+TGG | - | chr5.3:23959541-23959560 | MS.gene45085:CDS | 45.0% |
! | GCTTTTGTAGTCATGTGGGA+AGG | + | chr5.3:23958865-23958884 | None:intergenic | 45.0% |
!! | CAAAAGCATTGAGGTCCTTG+AGG | - | chr5.3:23958878-23958897 | MS.gene45085:CDS | 45.0% |
AGCTCTTCGTGGAAAGCTAG+AGG | - | chr5.3:23958764-23958783 | MS.gene45085:CDS | 50.0% | |
AGTCATGTGGGAAGGCCTTA+GGG | + | chr5.3:23958857-23958876 | None:intergenic | 50.0% | |
ATTGAGGTCCTTGAGGGTGA+TGG | - | chr5.3:23958885-23958904 | MS.gene45085:CDS | 50.0% | |
CGCCACTTCACTTATGCTGA+AGG | - | chr5.3:23958927-23958946 | MS.gene45085:CDS | 50.0% | |
GAGCTTTACCATCACCCTCA+AGG | + | chr5.3:23958896-23958915 | None:intergenic | 50.0% | |
GCTGTAACACCAGTTGGAGA+AGG | - | chr5.3:23959547-23959566 | MS.gene45085:CDS | 50.0% | |
TAGTCATGTGGGAAGGCCTT+AGG | + | chr5.3:23958858-23958877 | None:intergenic | 50.0% | |
AACGCTAGGCACTAGTGCAG+TGG | + | chr5.3:23959298-23959317 | None:intergenic | 55.0% | |
! | GAGGGTGATGGTAAAGCTCC+TGG | - | chr5.3:23958897-23958916 | MS.gene45085:CDS | 55.0% |
!! | GTGAAGTGGCGGATAGAGCC+AGG | + | chr5.3:23958918-23958937 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 23958756 | 23959699 | 23958756 | ID=MS.gene45085 |
chr5.3 | mRNA | 23958756 | 23959699 | 23958756 | ID=MS.gene45085.t1;Parent=MS.gene45085 |
chr5.3 | exon | 23959507 | 23959699 | 23959507 | ID=MS.gene45085.t1.exon1;Parent=MS.gene45085.t1 |
chr5.3 | CDS | 23959507 | 23959699 | 23959507 | ID=cds.MS.gene45085.t1;Parent=MS.gene45085.t1 |
chr5.3 | exon | 23958756 | 23959033 | 23958756 | ID=MS.gene45085.t1.exon2;Parent=MS.gene45085.t1 |
chr5.3 | CDS | 23958756 | 23959033 | 23958756 | ID=cds.MS.gene45085.t1;Parent=MS.gene45085.t1 |
Gene Sequence |
Protein sequence |