AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023230.t1 MTR_7g100328 32.710 321 182 8 4 302 20 328 2.60e-43 152
MS.gene023230.t1 MTR_3g095070 39.583 192 116 0 111 302 115 306 9.23e-43 150
MS.gene023230.t1 MTR_1g067600 28.881 277 178 6 42 302 61 334 1.09e-26 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023230.t1 AT3G18420 57.912 297 119 3 23 316 21 314 1.52e-109 321
MS.gene023230.t1 AT4G39470 33.493 209 138 1 94 302 107 314 8.79e-42 148
MS.gene023230.t1 AT3G53560 40.741 189 107 2 109 294 119 305 1.67e-39 142
MS.gene023230.t1 AT2G37400 35.833 240 144 4 58 294 73 305 1.88e-39 142
MS.gene023230.t1 AT3G53560 40.741 189 107 2 109 294 167 353 2.61e-39 142
MS.gene023230.t1 AT5G02590 38.860 193 112 3 113 302 122 311 7.40e-39 140
MS.gene023230.t1 AT3G09490 30.769 195 130 2 103 294 96 288 2.68e-25 103

Find 92 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCCACTCTGTTTCTTC+TGG 0.249137 4.3:-17968188 None:intergenic
GTTGGTGATGGTGGGATTAA+AGG 0.253843 4.3:-17967781 None:intergenic
CCATCAACCTCAAATTTCTT+AGG 0.268921 4.3:-17968614 None:intergenic
TTGTCAAGGATCAAAGATTT+TGG 0.273449 4.3:+17968653 MS.gene023230:CDS
ATGGAGAAAGAGGGTGAATT+GGG 0.273975 4.3:-17967753 None:intergenic
GAAGAATGTTGATGAAGCTT+TGG 0.327821 4.3:+17968460 MS.gene023230:CDS
CCTAAGAAATTTGAGGTTGA+TGG 0.346694 4.3:+17968614 MS.gene023230:CDS
GATGGAGAAAGAGGGTGAAT+TGG 0.350227 4.3:-17967754 None:intergenic
GGAACAGTTTGCTAAGTATA+AGG 0.351979 4.3:+17968583 MS.gene023230:CDS
CTGCTCCGGCGAGGGCTTTG+AGG 0.353529 4.3:-17967896 None:intergenic
AGTTGCAGTGGAAGACAATA+AGG 0.362038 4.3:+17968385 MS.gene023230:CDS
CGGTGGTGGTTCGGCTCTGG+CGG 0.363919 4.3:-17967970 None:intergenic
CGGAGCAACCTCTCCCTTAT+CGG 0.375694 4.3:+17968046 MS.gene023230:CDS
TGGTGGTTCGGCTCTGGCGG+GGG 0.383573 4.3:-17967967 None:intergenic
CGGCGAGGGCTTTGAGGTGG+TGG 0.390938 4.3:-17967890 None:intergenic
GGCTTTGAGGTGGTGGAGGA+TGG 0.394000 4.3:-17967883 None:intergenic
TGCAAGGTTAACAATCGAAA+TGG 0.400291 4.3:+17968217 MS.gene023230:CDS
AGAAGGGGTGTTGGTGATGG+TGG 0.403554 4.3:-17967790 None:intergenic
GGTGGTGGTTCGGCTCTGGC+GGG 0.413351 4.3:-17967969 None:intergenic
AAATAAGGTCTAAAATCATT+AGG 0.416811 4.3:-17968512 None:intergenic
AAGAATGTTGATGAAGCTTT+GGG 0.419777 4.3:+17968461 MS.gene023230:CDS
TAGAGATGTGAAGTTGATAA+TGG 0.423251 4.3:+17968418 MS.gene023230:CDS
GTGGTGGAGGATGGGAGAGT+TGG 0.428388 4.3:-17967874 None:intergenic
AGAGGGTGAATTGGGGATAG+TGG 0.430807 4.3:-17967745 None:intergenic
GTTGGAAGATTGAGCTTTGA+CGG 0.431332 4.3:-17967856 None:intergenic
TGTCGGTGGTGGTTCGGCTC+TGG 0.433843 4.3:-17967973 None:intergenic
TAAAGACTTCAGAGCTTCAA+TGG 0.439651 4.3:-17968093 None:intergenic
GGGAAATTGAGAAGGGGTGT+TGG 0.443788 4.3:-17967799 None:intergenic
GGTAAGTGTCGGTGGTGGTT+CGG 0.446139 4.3:-17967979 None:intergenic
AATCTTTGATCCTTGACAAA+GGG 0.446878 4.3:-17968649 None:intergenic
CGTTTCGAGGAATTCCGATA+AGG 0.451133 4.3:-17968060 None:intergenic
GTGGTGGTTCGGCTCTGGCG+GGG 0.456947 4.3:-17967968 None:intergenic
GAAGGGGTGTTGGTGATGGT+GGG 0.461310 4.3:-17967789 None:intergenic
GCTTTGAGGTGGTGGAGGAT+GGG 0.463477 4.3:-17967882 None:intergenic
TGGATTCATTGTTCGTTTCG+AGG 0.468784 4.3:-17968073 None:intergenic
GAATGTGAATGCGGAGGTGG+TGG 0.471142 4.3:-17967937 None:intergenic
GGGGAATGTGAATGCGGAGG+TGG 0.471588 4.3:-17967940 None:intergenic
CGAGGGCTTTGAGGTGGTGG+AGG 0.473605 4.3:-17967887 None:intergenic
TTGATGGACCGTTGCGGAGA+AGG 0.474318 4.3:+17968326 MS.gene023230:CDS
GTTTCGAGGAATTCCGATAA+GGG 0.474777 4.3:-17968059 None:intergenic
GGTGGCGTATAGAGCGGAGA+GGG 0.479069 4.3:-17967821 None:intergenic
GGCAGTGAAGAGTGCTGCTC+CGG 0.485649 4.3:-17967910 None:intergenic
GAAGAGTGCTGCTCCGGCGA+GGG 0.485769 4.3:-17967904 None:intergenic
AAAGGATGGGATGGAGAAAG+AGG 0.501450 4.3:-17967763 None:intergenic
TGAAGCTTTGGGTCTGTATG+AGG 0.504935 4.3:+17968472 MS.gene023230:CDS
CTAAGAAATTTGAGGTTGAT+GGG 0.506673 4.3:+17968615 MS.gene023230:CDS
TGATGGACCGTTGCGGAGAA+GGG 0.506719 4.3:+17968327 MS.gene023230:CDS
GACACCGCGCGAAGTTTCTA+CGG 0.516353 4.3:+17968248 MS.gene023230:CDS
AGTGGAAGACAATAAGGAAA+AGG 0.518895 4.3:+17968391 MS.gene023230:CDS
GCAAGGTTAACAATCGAAAT+GGG 0.519589 4.3:+17968218 MS.gene023230:CDS
GAATGCGGAGGTGGTGGTTG+CGG 0.520284 4.3:-17967931 None:intergenic
CACCACCTCAAAGCCCTCGC+CGG 0.520439 4.3:+17967891 MS.gene023230:CDS
TTGAGAAGGGGTGTTGGTGA+TGG 0.521864 4.3:-17967793 None:intergenic
GTCAGTTTCGTCGATGACTT+CGG 0.524233 4.3:-17968000 None:intergenic
TGACGGTGATTCGACGGTGG+TGG 0.524297 4.3:-17967839 None:intergenic
TGAAGAGTGCTGCTCCGGCG+AGG 0.527363 4.3:-17967905 None:intergenic
AAAGCGCTTCGAAGGAAAGC+GGG 0.530830 4.3:-17968289 None:intergenic
GGAGGCGGGGAATGTGAATG+CGG 0.532876 4.3:-17967946 None:intergenic
GAGCTTTGACGGTGATTCGA+CGG 0.534374 4.3:-17967845 None:intergenic
GGTTGCTCCGGCGTCTGCAT+CGG 0.536968 4.3:-17968033 None:intergenic
GGTGGGATTAAAGGATGGGA+TGG 0.538020 4.3:-17967772 None:intergenic
GGCGGGGAATGTGAATGCGG+AGG 0.538452 4.3:-17967943 None:intergenic
ATTGTCACCTAAGAAATTTG+AGG 0.539157 4.3:+17968607 MS.gene023230:CDS
CTCCGGCGAGGGCTTTGAGG+TGG 0.540300 4.3:-17967893 None:intergenic
TGGAGAAAGAGGGTGAATTG+GGG 0.546028 4.3:-17967752 None:intergenic
TGATAAGAATGATGAAGCTA+AGG 0.546275 4.3:+17968562 MS.gene023230:CDS
GTGATGGTGGGATTAAAGGA+TGG 0.567091 4.3:-17967777 None:intergenic
GAGGAATTCCGATAAGGGAG+AGG 0.567369 4.3:-17968054 None:intergenic
CTTCAGCAGAAACTTGAACT+CGG 0.568679 4.3:+17968116 MS.gene023230:CDS
ATTTGAGAACCCCTTTGTCA+AGG 0.570886 4.3:+17968639 MS.gene023230:CDS
ATCTTTGATCCTTGACAAAG+GGG 0.572521 4.3:-17968648 None:intergenic
CAGCTTCCCCTTCTCCGCAA+CGG 0.578857 4.3:-17968334 None:intergenic
AAGGATGGGATGGAGAAAGA+GGG 0.579584 4.3:-17967762 None:intergenic
CGATAAGGGAGAGGTTGCTC+CGG 0.581292 4.3:-17968045 None:intergenic
AAATCTTTGATCCTTGACAA+AGG 0.582789 4.3:-17968650 None:intergenic
TGATGGTGGGATTAAAGGAT+GGG 0.590638 4.3:-17967776 None:intergenic
AGATGCTCTTAGAGTTGCAG+TGG 0.595633 4.3:+17968373 MS.gene023230:CDS
ACTTCGGTAAGTGTCGGTGG+TGG 0.599015 4.3:-17967984 None:intergenic
GATGGACCGTTGCGGAGAAG+GGG 0.602730 4.3:+17968328 MS.gene023230:CDS
TGGCGTATAGAGCGGAGAGG+GGG 0.624673 4.3:-17967819 None:intergenic
GTGGCGTATAGAGCGGAGAG+GGG 0.629311 4.3:-17967820 None:intergenic
ATGACTTCGGTAAGTGTCGG+TGG 0.630831 4.3:-17967987 None:intergenic
TCGATGACTTCGGTAAGTGT+CGG 0.631034 4.3:-17967990 None:intergenic
GTTGTCACCGATGCAGACGC+CGG 0.637962 4.3:+17968026 MS.gene023230:CDS
AAAAGCGCTTCGAAGGAAAG+CGG 0.644206 4.3:-17968290 None:intergenic
AAGGGGAAGCTGTAATTGAG+AGG 0.645304 4.3:+17968345 MS.gene023230:CDS
AGTGGAAATTCATCGCTGCA+AGG 0.647296 4.3:+17968201 MS.gene023230:CDS
GACGGTGGTGGCGTATAGAG+CGG 0.647969 4.3:-17967827 None:intergenic
TGCAACCAGAAGAAACAGAG+TGG 0.703961 4.3:+17968183 MS.gene023230:CDS
CTTTGACGGTGATTCGACGG+TGG 0.721046 4.3:-17967842 None:intergenic
TTCGCCGTAGAAACTTCGCG+CGG 0.735390 4.3:-17968252 None:intergenic
TGGTGGCGTATAGAGCGGAG+AGG 0.738242 4.3:-17967822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAGGTCTAAAATCATT+AGG - chr4.3:17968515-17968534 None:intergenic 20.0%
!!! ATTTTAGACCTTATTTTTGC+AGG + chr4.3:17968519-17968538 MS.gene023230:CDS 25.0%
!!! TTTTAGACCTTATTTTTGCA+GGG + chr4.3:17968520-17968539 MS.gene023230:CDS 25.0%
AAATCTTTGATCCTTGACAA+AGG - chr4.3:17968653-17968672 None:intergenic 30.0%
AATCTTTGATCCTTGACAAA+GGG - chr4.3:17968652-17968671 None:intergenic 30.0%
ATTGTCACCTAAGAAATTTG+AGG + chr4.3:17968607-17968626 MS.gene023230:CDS 30.0%
TGATAAGAATGATGAAGCTA+AGG + chr4.3:17968562-17968581 MS.gene023230:CDS 30.0%
! AAGAATGTTGATGAAGCTTT+GGG + chr4.3:17968461-17968480 MS.gene023230:CDS 30.0%
! CTAAGAAATTTGAGGTTGAT+GGG + chr4.3:17968615-17968634 MS.gene023230:CDS 30.0%
! TTGTCAAGGATCAAAGATTT+TGG + chr4.3:17968653-17968672 MS.gene023230:CDS 30.0%
!! TAGAGATGTGAAGTTGATAA+TGG + chr4.3:17968418-17968437 MS.gene023230:CDS 30.0%
!!! TTTAGACCTTATTTTTGCAG+GGG + chr4.3:17968521-17968540 MS.gene023230:CDS 30.0%
AGTGGAAGACAATAAGGAAA+AGG + chr4.3:17968391-17968410 MS.gene023230:CDS 35.0%
ATCATTCCCCTGCAAAAATA+AGG - chr4.3:17968530-17968549 None:intergenic 35.0%
ATCTTTGATCCTTGACAAAG+GGG - chr4.3:17968651-17968670 None:intergenic 35.0%
CCATCAACCTCAAATTTCTT+AGG - chr4.3:17968617-17968636 None:intergenic 35.0%
GCAAGGTTAACAATCGAAAT+GGG + chr4.3:17968218-17968237 MS.gene023230:CDS 35.0%
TAAAGACTTCAGAGCTTCAA+TGG - chr4.3:17968096-17968115 None:intergenic 35.0%
TGCAAGGTTAACAATCGAAA+TGG + chr4.3:17968217-17968236 MS.gene023230:CDS 35.0%
! AATTTCCACTCTGTTTCTTC+TGG - chr4.3:17968191-17968210 None:intergenic 35.0%
! CCTAAGAAATTTGAGGTTGA+TGG + chr4.3:17968614-17968633 MS.gene023230:CDS 35.0%
! GAAGAATGTTGATGAAGCTT+TGG + chr4.3:17968460-17968479 MS.gene023230:CDS 35.0%
!! GGAACAGTTTGCTAAGTATA+AGG + chr4.3:17968583-17968602 MS.gene023230:CDS 35.0%
AGTTGCAGTGGAAGACAATA+AGG + chr4.3:17968385-17968404 MS.gene023230:CDS 40.0%
ATGGAGAAAGAGGGTGAATT+GGG - chr4.3:17967756-17967775 None:intergenic 40.0%
ATTTGAGAACCCCTTTGTCA+AGG + chr4.3:17968639-17968658 MS.gene023230:CDS 40.0%
CTTCAGCAGAAACTTGAACT+CGG + chr4.3:17968116-17968135 MS.gene023230:CDS 40.0%
GTTTCGAGGAATTCCGATAA+GGG - chr4.3:17968062-17968081 None:intergenic 40.0%
TGGATTCATTGTTCGTTTCG+AGG - chr4.3:17968076-17968095 None:intergenic 40.0%
! GCAACGAGATCAAGTTTTTG+AGG - chr4.3:17968166-17968185 None:intergenic 40.0%
! GTTGGAAGATTGAGCTTTGA+CGG - chr4.3:17967859-17967878 None:intergenic 40.0%
! TTTCGAAAACGCGCTTTTGA+TGG + chr4.3:17968310-17968329 MS.gene023230:CDS 40.0%
!! TGATGGTGGGATTAAAGGAT+GGG - chr4.3:17967779-17967798 None:intergenic 40.0%
AAAGGATGGGATGGAGAAAG+AGG - chr4.3:17967766-17967785 None:intergenic 45.0%
AAGGATGGGATGGAGAAAGA+GGG - chr4.3:17967765-17967784 None:intergenic 45.0%
AAGGGGAAGCTGTAATTGAG+AGG + chr4.3:17968345-17968364 MS.gene023230:CDS 45.0%
AGATGCTCTTAGAGTTGCAG+TGG + chr4.3:17968373-17968392 MS.gene023230:CDS 45.0%
AGTGGAAATTCATCGCTGCA+AGG + chr4.3:17968201-17968220 MS.gene023230:CDS 45.0%
CGTTTCGAGGAATTCCGATA+AGG - chr4.3:17968063-17968082 None:intergenic 45.0%
GATGGAGAAAGAGGGTGAAT+TGG - chr4.3:17967757-17967776 None:intergenic 45.0%
GTCAGTTTCGTCGATGACTT+CGG - chr4.3:17968003-17968022 None:intergenic 45.0%
TCGATGACTTCGGTAAGTGT+CGG - chr4.3:17967993-17968012 None:intergenic 45.0%
TGCAACCAGAAGAAACAGAG+TGG + chr4.3:17968183-17968202 MS.gene023230:CDS 45.0%
TGGAGAAAGAGGGTGAATTG+GGG - chr4.3:17967755-17967774 None:intergenic 45.0%
!! AAAAGCGCTTCGAAGGAAAG+CGG - chr4.3:17968293-17968312 None:intergenic 45.0%
!! GTGATGGTGGGATTAAAGGA+TGG - chr4.3:17967780-17967799 None:intergenic 45.0%
!! GTTGGTGATGGTGGGATTAA+AGG - chr4.3:17967784-17967803 None:intergenic 45.0%
!! TGAAGCTTTGGGTCTGTATG+AGG + chr4.3:17968472-17968491 MS.gene023230:CDS 45.0%
!!! GTTTTCGAAAAGCGCTTCGA+AGG - chr4.3:17968300-17968319 None:intergenic 45.0%
AGAGGGTGAATTGGGGATAG+TGG - chr4.3:17967748-17967767 None:intergenic 50.0%
GAGAGGGGGAAATTGAGAAG+GGG - chr4.3:17967808-17967827 None:intergenic 50.0%
GAGGAATTCCGATAAGGGAG+AGG - chr4.3:17968057-17968076 None:intergenic 50.0%
GGAGAGGGGGAAATTGAGAA+GGG - chr4.3:17967809-17967828 None:intergenic 50.0%
GGTGGGATTAAAGGATGGGA+TGG - chr4.3:17967775-17967794 None:intergenic 50.0%
! AAAGCGCTTCGAAGGAAAGC+GGG - chr4.3:17968292-17968311 None:intergenic 50.0%
! GAGCTTTGACGGTGATTCGA+CGG - chr4.3:17967848-17967867 None:intergenic 50.0%
! GGGAAATTGAGAAGGGGTGT+TGG - chr4.3:17967802-17967821 None:intergenic 50.0%
!! ATGACTTCGGTAAGTGTCGG+TGG - chr4.3:17967990-17968009 None:intergenic 50.0%
!! TTGAGAAGGGGTGTTGGTGA+TGG - chr4.3:17967796-17967815 None:intergenic 50.0%
CGATAAGGGAGAGGTTGCTC+CGG - chr4.3:17968048-17968067 None:intergenic 55.0%
CGGAGAGGGGGAAATTGAGA+AGG - chr4.3:17967810-17967829 None:intergenic 55.0%
CGGAGCAACCTCTCCCTTAT+CGG + chr4.3:17968046-17968065 MS.gene023230:CDS 55.0%
CTTTGACGGTGATTCGACGG+TGG - chr4.3:17967845-17967864 None:intergenic 55.0%
GAATGTGAATGCGGAGGTGG+TGG - chr4.3:17967940-17967959 None:intergenic 55.0%
GACACCGCGCGAAGTTTCTA+CGG + chr4.3:17968248-17968267 MS.gene023230:CDS 55.0%
TTCGCCGTAGAAACTTCGCG+CGG - chr4.3:17968255-17968274 None:intergenic 55.0%
! TGATGGACCGTTGCGGAGAA+GGG + chr4.3:17968327-17968346 MS.gene023230:CDS 55.0%
! TTGATGGACCGTTGCGGAGA+AGG + chr4.3:17968326-17968345 MS.gene023230:CDS 55.0%
!! ACTTCGGTAAGTGTCGGTGG+TGG - chr4.3:17967987-17968006 None:intergenic 55.0%
!! AGAAGGGGTGTTGGTGATGG+TGG - chr4.3:17967793-17967812 None:intergenic 55.0%
!! GAAGGGGTGTTGGTGATGGT+GGG - chr4.3:17967792-17967811 None:intergenic 55.0%
!! GCGCTTTTGATGGACCGTTG+CGG + chr4.3:17968320-17968339 MS.gene023230:CDS 55.0%
!! GCTTTGAGGTGGTGGAGGAT+GGG - chr4.3:17967885-17967904 None:intergenic 55.0%
!! GGTAAGTGTCGGTGGTGGTT+CGG - chr4.3:17967982-17968001 None:intergenic 55.0%
CAGCTTCCCCTTCTCCGCAA+CGG - chr4.3:17968337-17968356 None:intergenic 60.0%
GATGGACCGTTGCGGAGAAG+GGG + chr4.3:17968328-17968347 MS.gene023230:CDS 60.0%
GGAGGCGGGGAATGTGAATG+CGG - chr4.3:17967949-17967968 None:intergenic 60.0%
GGGGAATGTGAATGCGGAGG+TGG - chr4.3:17967943-17967962 None:intergenic 60.0%
GGTGGCGTATAGAGCGGAGA+GGG - chr4.3:17967824-17967843 None:intergenic 60.0%
GTGGCGTATAGAGCGGAGAG+GGG - chr4.3:17967823-17967842 None:intergenic 60.0%
GTTGTCACCGATGCAGACGC+CGG + chr4.3:17968026-17968045 MS.gene023230:CDS 60.0%
TGACGGTGATTCGACGGTGG+TGG - chr4.3:17967842-17967861 None:intergenic 60.0%
TGGCGTATAGAGCGGAGAGG+GGG - chr4.3:17967822-17967841 None:intergenic 60.0%
! GAATGCGGAGGTGGTGGTTG+CGG - chr4.3:17967934-17967953 None:intergenic 60.0%
! GACGGTGGTGGCGTATAGAG+CGG - chr4.3:17967830-17967849 None:intergenic 60.0%
! GTGGTGGAGGATGGGAGAGT+TGG - chr4.3:17967877-17967896 None:intergenic 60.0%
! TGGTGGCGTATAGAGCGGAG+AGG - chr4.3:17967825-17967844 None:intergenic 60.0%
!! GGCAGTGAAGAGTGCTGCTC+CGG - chr4.3:17967913-17967932 None:intergenic 60.0%
!! GGCTTTGAGGTGGTGGAGGA+TGG - chr4.3:17967886-17967905 None:intergenic 60.0%
CACCACCTCAAAGCCCTCGC+CGG + chr4.3:17967891-17967910 MS.gene023230:CDS 65.0%
GGCGGGGAATGTGAATGCGG+AGG - chr4.3:17967946-17967965 None:intergenic 65.0%
GGTTGCTCCGGCGTCTGCAT+CGG - chr4.3:17968036-17968055 None:intergenic 65.0%
! TGTCGGTGGTGGTTCGGCTC+TGG - chr4.3:17967976-17967995 None:intergenic 65.0%
!! CGAGGGCTTTGAGGTGGTGG+AGG - chr4.3:17967890-17967909 None:intergenic 65.0%
!! GAAGAGTGCTGCTCCGGCGA+GGG - chr4.3:17967907-17967926 None:intergenic 65.0%
!! TGAAGAGTGCTGCTCCGGCG+AGG - chr4.3:17967908-17967927 None:intergenic 65.0%
CTGCTCCGGCGAGGGCTTTG+AGG - chr4.3:17967899-17967918 None:intergenic 70.0%
! CGGTGGTGGTTCGGCTCTGG+CGG - chr4.3:17967973-17967992 None:intergenic 70.0%
! GGTGGTGGTTCGGCTCTGGC+GGG - chr4.3:17967972-17967991 None:intergenic 70.0%
! GTGGTGGTTCGGCTCTGGCG+GGG - chr4.3:17967971-17967990 None:intergenic 70.0%
! TGGTGGTTCGGCTCTGGCGG+GGG - chr4.3:17967970-17967989 None:intergenic 70.0%
!! CGGCGAGGGCTTTGAGGTGG+TGG - chr4.3:17967893-17967912 None:intergenic 70.0%
!! CTCCGGCGAGGGCTTTGAGG+TGG - chr4.3:17967896-17967915 None:intergenic 70.0%
! TGGTTCGGCTCTGGCGGGGG+AGG - chr4.3:17967967-17967986 None:intergenic 75.0%
! TTCGGCTCTGGCGGGGGAGG+CGG - chr4.3:17967964-17967983 None:intergenic 75.0%
!! TCGGCTCTGGCGGGGGAGGC+GGG - chr4.3:17967963-17967982 None:intergenic 80.0%
!! CGGCTCTGGCGGGGGAGGCG+GGG - chr4.3:17967962-17967981 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 17967738 17968691 17967738 ID=MS.gene023230
chr4.3 mRNA 17967738 17968691 17967738 ID=MS.gene023230.t1;Parent=MS.gene023230
chr4.3 exon 17967738 17968691 17967738 ID=MS.gene023230.t1.exon1;Parent=MS.gene023230.t1
chr4.3 CDS 17967738 17968691 17967738 ID=cds.MS.gene023230.t1;Parent=MS.gene023230.t1
Gene Sequence

>MS.gene023230

ATGATTTCCACTATCCCCAATTCACCCTCTTTCTCCATCCCATCCTTTAATCCCACCATCACCAACACCCCTTCTCAATTTCCCCCTCTCCGCTCTATACGCCACCACCGTCGAATCACCGTCAAAGCTCAATCTTCCAACTCTCCCATCCTCCACCACCTCAAAGCCCTCGCCGGAGCAGCACTCTTCACTGCCGCAACCACCACCTCCGCATTCACATTCCCCGCCTCCCCCGCCAGAGCCGAACCACCACCGACACTTACCGAAGTCATCGACGAAACTGACACTGTTGTCACCGATGCAGACGCCGGAGCAACCTCTCCCTTATCGGAATTCCTCGAAACGAACAATGAATCCATTGAAGCTCTGAAGTCTTTACTTCAGCAGAAACTTGAACTCGGCGAAGACGAAGAAGCGTTGAAGATCCTCAAAAACTTGATCTCGTTGCAACCAGAAGAAACAGAGTGGAAATTCATCGCTGCAAGGTTAACAATCGAAATGGGAGACACAGACACCGCGCGAAGTTTCTACGGCGAAATCTTAAAGTCAAACCCGCTTTCCTTCGAAGCGCTTTTCGAAAACGCGCTTTTGATGGACCGTTGCGGAGAAGGGGAAGCTGTAATTGAGAGGCTTGAAGATGCTCTTAGAGTTGCAGTGGAAGACAATAAGGAAAAGGAAGCTAGAGATGTGAAGTTGATAATGGCTCAGATTCAGTTTCTTCAGAAGAATGTTGATGAAGCTTTGGGTCTGTATGAGGTATTAATCAAAGAAGATCCTAATGATTTTAGACCTTATTTTTGCAGGGGAATGATTTATACATTGCTTGATAAGAATGATGAAGCTAAGGAACAGTTTGCTAAGTATAAGGAATTGTCACCTAAGAAATTTGAGGTTGATGGGTATTTGAGAACCCCTTTGTCAAGGATCAAAGATTTTGGTACTGATCAAAGCTGA
Protein sequence

>MS.gene023230.t1

MISTIPNSPSFSIPSFNPTITNTPSQFPPLRSIRHHRRITVKAQSSNSPILHHLKALAGAALFTAATTTSAFTFPASPARAEPPPTLTEVIDETDTVVTDADAGATSPLSEFLETNNESIEALKSLLQQKLELGEDEEALKILKNLISLQPEETEWKFIAARLTIEMGDTDTARSFYGEILKSNPLSFEALFENALLMDRCGEGEAVIERLEDALRVAVEDNKEKEARDVKLIMAQIQFLQKNVDEALGLYEVLIKEDPNDFRPYFCRGMIYTLLDKNDEAKEQFAKYKELSPKKFEVDGYLRTPLSRIKDFGTDQS