Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023375.t1 | GAU12398.1 | 93.8 | 145 | 8 | 1 | 1 | 145 | 1 | 144 | 9.30E-66 | 260.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023375.t1 | Q9PV94 | 57.2 | 145 | 59 | 1 | 1 | 145 | 1 | 142 | 5.4e-38 | 159.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023375.t1 | A0A392PL91 | 93.1 | 145 | 9 | 1 | 1 | 145 | 1 | 144 | 2.6e-65 | 258.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023375 | MS.gene79126 | PPI |
| MS.gene045227 | MS.gene023375 | PPI |
| MS.gene75567 | MS.gene023375 | PPI |
| MS.gene067039 | MS.gene023375 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023375.t1 | MTR_8g080090 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 4.51e-178 | 491 |
| MS.gene023375.t1 | MTR_5g092010 | 93.956 | 182 | 8 | 3 | 1 | 181 | 1 | 180 | 8.95e-111 | 321 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023375.t1 | AT5G44500 | 65.236 | 233 | 65 | 3 | 1 | 233 | 1 | 217 | 3.96e-82 | 247 |
| MS.gene023375.t1 | AT5G44500 | 65.236 | 233 | 65 | 3 | 1 | 233 | 1 | 217 | 3.96e-82 | 247 |
| MS.gene023375.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 6.59e-79 | 239 |
| MS.gene023375.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 6.59e-79 | 239 |
| MS.gene023375.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 6.59e-79 | 239 |
| MS.gene023375.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 6.59e-79 | 239 |
| MS.gene023375.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 6.59e-79 | 239 |
Find 133 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATGTATTGAAGCATTT+TGG | 0.195080 | 4.3:+16687171 | None:intergenic |
| CGCAAACTTCCACCTGTAAA+AGG | 0.250965 | 4.3:-16687046 | MS.gene023375:CDS |
| GGTAGTGGTGTTCCTGTCTT+TGG | 0.265332 | 4.3:-16686458 | MS.gene023375:CDS |
| TGTTGTTGTTGCTGCTGATT+TGG | 0.271288 | 4.3:+16686407 | None:intergenic |
| CAAGCTCAGCCTGGTCTTGC+TGG | 0.294341 | 4.3:-16686818 | MS.gene023375:CDS |
| CCTGGAATTGGTCGTGCTGC+TGG | 0.318434 | 4.3:-16686872 | MS.gene023375:CDS |
| AGCAGCAGCATTAACAGCTT+TGG | 0.339850 | 4.3:+16686904 | None:intergenic |
| CGTCCACCGGTTTCGTATCC+TGG | 0.354556 | 4.3:-16686740 | MS.gene023375:CDS |
| GGTCCTCCTCCACCGCAATT+TGG | 0.356028 | 4.3:-16686605 | MS.gene023375:CDS |
| CCACCTGGCATACCGGGATA+TGG | 0.364348 | 4.3:+16686680 | None:intergenic |
| CGAGGCGGCCCCTGCATTCC+AGG | 0.374487 | 4.3:+16686503 | None:intergenic |
| CCAGGAGGAGGAGGCATTCC+GGG | 0.384559 | 4.3:+16686479 | None:intergenic |
| ACCAGGAGGAGGAGGCATTC+CGG | 0.385922 | 4.3:+16686478 | None:intergenic |
| TCCTCCTCATCCTGGAATGC+AGG | 0.390826 | 4.3:-16686513 | MS.gene023375:CDS |
| GCTTTGGAGCGAGATTCTTC+AGG | 0.394190 | 4.3:+16686920 | None:intergenic |
| GGTATGCCGCCTCCTCAGTA+TGG | 0.402898 | 4.3:-16686584 | MS.gene023375:CDS |
| TGCTGCTGATTTGGAGGAGG+GGG | 0.413241 | 4.3:+16686416 | None:intergenic |
| ATCATCTGTCCAGGAGGAGG+TGG | 0.414307 | 4.3:+16686545 | None:intergenic |
| CCTCCTCATCCTGGAATGCA+GGG | 0.419349 | 4.3:-16686512 | MS.gene023375:CDS |
| GCTATGGCTGGTCCTGGAAT+TGG | 0.430223 | 4.3:-16686884 | MS.gene023375:CDS |
| CCCGGAATGCCTCCTCCTCC+TGG | 0.431670 | 4.3:-16686479 | MS.gene023375:CDS |
| GTTAATGCTGCTGCTATGGC+TGG | 0.432756 | 4.3:-16686896 | MS.gene023375:CDS |
| GCTGGTCCTGTTCGTGGTGT+TGG | 0.434114 | 4.3:-16686800 | MS.gene023375:CDS |
| TGTTGTTGCTGCTGATTTGG+AGG | 0.446293 | 4.3:+16686410 | None:intergenic |
| GTTGCTGCTGATTTGGAGGA+GGG | 0.447696 | 4.3:+16686414 | None:intergenic |
| CCAGCAGCACGACCAATTCC+AGG | 0.447795 | 4.3:+16686872 | None:intergenic |
| TCAACTCGTCGGAAAGTTCA+TGG | 0.449599 | 4.3:-16687116 | MS.gene023375:CDS |
| GCTGCTGCTATGGCTGGTCC+TGG | 0.450773 | 4.3:-16686890 | MS.gene023375:CDS |
| GGAGGAGGACCACCAGGTCT+CGG | 0.451190 | 4.3:+16686617 | None:intergenic |
| CGCCACATGAATCTCGTTCT+CGG | 0.453535 | 4.3:-16687085 | MS.gene023375:CDS |
| CGGAGGACCACCTGGCATAC+CGG | 0.454726 | 4.3:+16686673 | None:intergenic |
| CCAGGAGGAGGTGGGCCCAT+AGG | 0.458526 | 4.3:+16686554 | None:intergenic |
| CGAGTGTGCGGCGGTCTTCA+CGG | 0.461195 | 4.3:+16687002 | None:intergenic |
| ATGCAGGGGCCGCCTCGTCC+CGG | 0.465963 | 4.3:-16686497 | MS.gene023375:CDS |
| GGTCCACCAACACCACGAAC+AGG | 0.467407 | 4.3:+16686794 | None:intergenic |
| GGCATACCAAATTGCGGTGG+AGG | 0.470578 | 4.3:+16686599 | None:intergenic |
| AGCTGTTAATGCTGCTGCTA+TGG | 0.475726 | 4.3:-16686900 | MS.gene023375:CDS |
| CTCATCATCTGTCCAGGAGG+AGG | 0.476906 | 4.3:+16686542 | None:intergenic |
| GTTGTTTCCATGACTGTTGA+AGG | 0.478145 | 4.3:-16686953 | MS.gene023375:CDS |
| TCAGTATGGACAGAGACCTA+TGG | 0.479592 | 4.3:-16686570 | MS.gene023375:CDS |
| GGTGTTGGTGGACCTGCTCC+TGG | 0.479693 | 4.3:-16686785 | MS.gene023375:CDS |
| GGTCTTGCTGGTCCTGTTCG+TGG | 0.480513 | 4.3:-16686806 | MS.gene023375:CDS |
| TTCGTATCCTGGTGGTCCTC+CGG | 0.481130 | 4.3:-16686729 | MS.gene023375:CDS |
| CTGGAATTGGTCGTGCTGCT+GGG | 0.482553 | 4.3:-16686871 | MS.gene023375:CDS |
| AGAGGACCTCCTCCTCATCC+TGG | 0.484171 | 4.3:-16686521 | MS.gene023375:CDS |
| TGTTGCTGCTGATTTGGAGG+AGG | 0.484269 | 4.3:+16686413 | None:intergenic |
| TGAATAACTGTCGCCGGAGG+AGG | 0.485871 | 4.3:+16686839 | None:intergenic |
| CGTGAAGACCGCCGCACACT+CGG | 0.489568 | 4.3:-16687001 | MS.gene023375:CDS |
| ATGCCATATCCCGGTATGCC+AGG | 0.490273 | 4.3:-16686683 | MS.gene023375:CDS |
| ACCGGTGGACGCGAGATTTG+CGG | 0.490552 | 4.3:+16686752 | None:intergenic |
| GGTGGCGGACCACCTGGTCT+CGG | 0.492011 | 4.3:+16686653 | None:intergenic |
| CTTGAATTGTTACGCGCATA+CGG | 0.496159 | 4.3:+16687146 | None:intergenic |
| CCTATGGGCCCACCTCCTCC+TGG | 0.497010 | 4.3:-16686554 | MS.gene023375:CDS |
| GAGCGAGATTCTTCAGGAGG+AGG | 0.498376 | 4.3:+16686926 | None:intergenic |
| GGAGGAGCAAATTGCGGTGG+CGG | 0.503465 | 4.3:+16686638 | None:intergenic |
| GCCGCAAATCTCGCGTCCAC+CGG | 0.504423 | 4.3:-16686753 | MS.gene023375:CDS |
| CCGGTGATGCGTCCACCGCC+TGG | 0.505997 | 4.3:-16686710 | MS.gene023375:CDS |
| CTTCGCCGCGGAGGAGGAGA+AGG | 0.510146 | 4.3:+16686978 | None:intergenic |
| GGAGGACCACCTGGCATACC+GGG | 0.510653 | 4.3:+16686674 | None:intergenic |
| ATGCCTCCTCCTCCTGGTAG+TGG | 0.510791 | 4.3:-16686473 | MS.gene023375:CDS |
| AATTGCGGTGGCGGACCACC+TGG | 0.511941 | 4.3:+16686647 | None:intergenic |
| GGACGAGGTGGACCAAAGAC+AGG | 0.514937 | 4.3:+16686446 | None:intergenic |
| GGTCCTGTTCGTGGTGTTGG+TGG | 0.516931 | 4.3:-16686797 | MS.gene023375:CDS |
| CCTGGTCTCGGAGGACCACC+TGG | 0.517685 | 4.3:+16686665 | None:intergenic |
| CCAGGCGGTGGACGCATCAC+CGG | 0.518080 | 4.3:+16686710 | None:intergenic |
| CAATTTGCTCCTCCGAGACC+TGG | 0.521655 | 4.3:-16686629 | MS.gene023375:CDS |
| CGAGATTCTTCAGGAGGAGG+AGG | 0.523409 | 4.3:+16686929 | None:intergenic |
| CCGGGATATGGCATCTGACC+AGG | 0.523672 | 4.3:+16686692 | None:intergenic |
| CAACCTCTTCGCCGCGGAGG+AGG | 0.523754 | 4.3:+16686972 | None:intergenic |
| GGTCCTCTCATCATCTGTCC+AGG | 0.524181 | 4.3:+16686536 | None:intergenic |
| CCAGGTGGTCCTCCGAGACC+AGG | 0.525026 | 4.3:-16686665 | MS.gene023375:CDS |
| GGCCCCTGCATTCCAGGATG+AGG | 0.526052 | 4.3:+16686509 | None:intergenic |
| TGCGGTGGAGGAGGACCACC+AGG | 0.528067 | 4.3:+16686611 | None:intergenic |
| TGCATTCCAGGATGAGGAGG+AGG | 0.529746 | 4.3:+16686515 | None:intergenic |
| GGAGGAGGCATTCCGGGACG+AGG | 0.529786 | 4.3:+16686485 | None:intergenic |
| CGCATCACCGGAGGACCACC+AGG | 0.533162 | 4.3:+16686722 | None:intergenic |
| ATACCAAATTGCGGTGGAGG+AGG | 0.533559 | 4.3:+16686602 | None:intergenic |
| ATTGGTCGTGCTGCTGGGAG+AGG | 0.539889 | 4.3:-16686866 | MS.gene023375:CDS |
| GGCTGCATCATACCAGGAGC+AGG | 0.540362 | 4.3:+16686773 | None:intergenic |
| GTCTTTGGTCCACCTCGTCC+CGG | 0.542041 | 4.3:-16686443 | MS.gene023375:CDS |
| TATGGCATCTGACCAGGCGG+TGG | 0.542831 | 4.3:+16686698 | None:intergenic |
| TCTCCTCCTCCGCGGCGAAG+AGG | 0.543618 | 4.3:-16686975 | MS.gene023375:CDS |
| GAGATTCATGTGGCGGTCGA+AGG | 0.548205 | 4.3:+16687093 | None:intergenic |
| CAGTATGGACAGAGACCTAT+GGG | 0.551593 | 4.3:-16686569 | MS.gene023375:CDS |
| CTCTGTCCATACTGAGGAGG+CGG | 0.554358 | 4.3:+16686578 | None:intergenic |
| TTGCTGCTGATTTGGAGGAG+GGG | 0.556892 | 4.3:+16686415 | None:intergenic |
| GGACCACCAGGATACGAAAC+CGG | 0.557605 | 4.3:+16686734 | None:intergenic |
| AGGAGGACCTTCAACAGTCA+TGG | 0.558071 | 4.3:+16686946 | None:intergenic |
| ACAGTTATTCAAGCTCAGCC+TGG | 0.558727 | 4.3:-16686827 | MS.gene023375:CDS |
| TCATCTGTCCAGGAGGAGGT+GGG | 0.563438 | 4.3:+16686546 | None:intergenic |
| GTCTTCACGGTCACCGTCGG+TGG | 0.565080 | 4.3:+16687015 | None:intergenic |
| CCCTGCATTCCAGGATGAGG+AGG | 0.566700 | 4.3:+16686512 | None:intergenic |
| AAGACAGGAACACCACTACC+AGG | 0.567248 | 4.3:+16686461 | None:intergenic |
| CGAACAGGACCAGCAAGACC+AGG | 0.568021 | 4.3:+16686809 | None:intergenic |
| CCTGGTCAGATGCCATATCC+CGG | 0.573529 | 4.3:-16686692 | MS.gene023375:CDS |
| TGGGAGAGGTATTCCTCCTC+CGG | 0.576694 | 4.3:-16686852 | MS.gene023375:CDS |
| GCGGTCTTCACGGTCACCGT+CGG | 0.576706 | 4.3:+16687012 | None:intergenic |
| ATTTGCGGCTGCATCATACC+AGG | 0.577839 | 4.3:+16686767 | None:intergenic |
| ACACCACTACCAGGAGGAGG+AGG | 0.583299 | 4.3:+16686470 | None:intergenic |
| TTGGAGCGAGATTCTTCAGG+AGG | 0.585958 | 4.3:+16686923 | None:intergenic |
| GGAGGAGAAGGCCGAGTGTG+CGG | 0.586029 | 4.3:+16686990 | None:intergenic |
| TGAGCTTGAATAACTGTCGC+CGG | 0.590066 | 4.3:+16686833 | None:intergenic |
| CTCCTCATCCTGGAATGCAG+GGG | 0.609249 | 4.3:-16686511 | MS.gene023375:CDS |
| GGAGGCATTCCGGGACGAGG+CGG | 0.610066 | 4.3:+16686488 | None:intergenic |
| GGAACACCACTACCAGGAGG+AGG | 0.616003 | 4.3:+16686467 | None:intergenic |
| CAAGACGGTCGTCAACTCGT+CGG | 0.618826 | 4.3:-16687127 | MS.gene023375:CDS |
| TTTGCTCCTCCGAGACCTGG+TGG | 0.625587 | 4.3:-16686626 | MS.gene023375:CDS |
| GGCGGCATACCAAATTGCGG+TGG | 0.627411 | 4.3:+16686596 | None:intergenic |
| CTCGGAGGAGCAAATTGCGG+TGG | 0.627944 | 4.3:+16686635 | None:intergenic |
| GGCGGTGGACGCATCACCGG+AGG | 0.634074 | 4.3:+16686713 | None:intergenic |
| CCTCCTGGACAGATGATGAG+AGG | 0.637519 | 4.3:-16686539 | MS.gene023375:CDS |
| AAACAACCTCTTCGCCGCGG+AGG | 0.648728 | 4.3:+16686969 | None:intergenic |
| GGAGAAGGCCGAGTGTGCGG+CGG | 0.649221 | 4.3:+16686993 | None:intergenic |
| CGAGAACGAGATTCATGTGG+CGG | 0.654892 | 4.3:+16687086 | None:intergenic |
| GGTCTCGGAGGAGCAAATTG+CGG | 0.656856 | 4.3:+16686632 | None:intergenic |
| GGTGGTCCTCCGAGACCAGG+TGG | 0.664434 | 4.3:-16686662 | MS.gene023375:CDS |
| GGTCTCTGTCCATACTGAGG+AGG | 0.665455 | 4.3:+16686575 | None:intergenic |
| CCTCTCATCATCTGTCCAGG+AGG | 0.666388 | 4.3:+16686539 | None:intergenic |
| GGCGGACCACCTGGTCTCGG+AGG | 0.672885 | 4.3:+16686656 | None:intergenic |
| CCATATCCCGGTATGCCAGG+TGG | 0.677559 | 4.3:-16686680 | MS.gene023375:CDS |
| CGCCGAGAACGAGATTCATG+TGG | 0.682544 | 4.3:+16687083 | None:intergenic |
| CCACCAGGATACGAAACCGG+TGG | 0.682553 | 4.3:+16686737 | None:intergenic |
| GGAGGACCACCAGGTCTCGG+AGG | 0.685219 | 4.3:+16686620 | None:intergenic |
| GCTTGAATAACTGTCGCCGG+AGG | 0.688958 | 4.3:+16686836 | None:intergenic |
| ATAGGTCTCTGTCCATACTG+AGG | 0.691639 | 4.3:+16686572 | None:intergenic |
| CCACCGGTTTCGTATCCTGG+TGG | 0.700251 | 4.3:-16686737 | MS.gene023375:CDS |
| GGAGGCGGCATACCAAATTG+CGG | 0.711042 | 4.3:+16686593 | None:intergenic |
| GGATATGGCATCTGACCAGG+CGG | 0.715982 | 4.3:+16686695 | None:intergenic |
| CTCGGCCTTCTCCTCCTCCG+CGG | 0.716164 | 4.3:-16686983 | MS.gene023375:CDS |
| AAAGGTAAGAAAACCACCGA+CGG | 0.721265 | 4.3:-16687028 | MS.gene023375:CDS |
| ATGCGCGTAACAATTCAAGA+CGG | 0.746228 | 4.3:-16687142 | MS.gene023375:CDS |
| TGGAAACAACCTCTTCGCCG+CGG | 0.747245 | 4.3:+16686966 | None:intergenic |
| ACAGGAACACCACTACCAGG+AGG | 0.753038 | 4.3:+16686464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGATGTATTGAAGCATTT+TGG | + | chr4.3:16686425-16686444 | None:intergenic | 30.0% |
| ! | GTGGTTTTCTTACCTTTTAC+AGG | + | chr4.3:16686562-16686581 | None:intergenic | 35.0% |
| ! | GTTTTCTTACCTTTTACAGG+TGG | + | chr4.3:16686559-16686578 | None:intergenic | 35.0% |
| AAAGGTAAGAAAACCACCGA+CGG | - | chr4.3:16686565-16686584 | MS.gene023375:CDS | 40.0% | |
| ATGCGCGTAACAATTCAAGA+CGG | - | chr4.3:16686451-16686470 | MS.gene023375:CDS | 40.0% | |
| CTTGAATTGTTACGCGCATA+CGG | + | chr4.3:16686450-16686469 | None:intergenic | 40.0% | |
| ! | GTTGTTTCCATGACTGTTGA+AGG | - | chr4.3:16686640-16686659 | MS.gene023375:CDS | 40.0% |
| ! | TGTTGTTGTTGCTGCTGATT+TGG | + | chr4.3:16687189-16687208 | None:intergenic | 40.0% |
| ACAGTTATTCAAGCTCAGCC+TGG | - | chr4.3:16686766-16686785 | MS.gene023375:CDS | 45.0% | |
| AGCAGCAGCATTAACAGCTT+TGG | + | chr4.3:16686692-16686711 | None:intergenic | 45.0% | |
| AGCTGTTAATGCTGCTGCTA+TGG | - | chr4.3:16686693-16686712 | MS.gene023375:CDS | 45.0% | |
| ATAGGTCTCTGTCCATACTG+AGG | + | chr4.3:16687024-16687043 | None:intergenic | 45.0% | |
| CAGTATGGACAGAGACCTAT+GGG | - | chr4.3:16687024-16687043 | MS.gene023375:CDS | 45.0% | |
| CGCAAACTTCCACCTGTAAA+AGG | - | chr4.3:16686547-16686566 | MS.gene023375:CDS | 45.0% | |
| TCAACTCGTCGGAAAGTTCA+TGG | - | chr4.3:16686477-16686496 | MS.gene023375:CDS | 45.0% | |
| TCAGTATGGACAGAGACCTA+TGG | - | chr4.3:16687023-16687042 | MS.gene023375:CDS | 45.0% | |
| TGAGCTTGAATAACTGTCGC+CGG | + | chr4.3:16686763-16686782 | None:intergenic | 45.0% | |
| !! | TGTTGTTGCTGCTGATTTGG+AGG | + | chr4.3:16687186-16687205 | None:intergenic | 45.0% |
| AAGACAGGAACACCACTACC+AGG | + | chr4.3:16687135-16687154 | None:intergenic | 50.0% | |
| AGGAGGACCTTCAACAGTCA+TGG | + | chr4.3:16686650-16686669 | None:intergenic | 50.0% | |
| ATACCAAATTGCGGTGGAGG+AGG | + | chr4.3:16686994-16687013 | None:intergenic | 50.0% | |
| ATTTGCGGCTGCATCATACC+AGG | + | chr4.3:16686829-16686848 | None:intergenic | 50.0% | |
| CGAGAACGAGATTCATGTGG+CGG | + | chr4.3:16686510-16686529 | None:intergenic | 50.0% | |
| CGCCACATGAATCTCGTTCT+CGG | - | chr4.3:16686508-16686527 | MS.gene023375:CDS | 50.0% | |
| GTTAATGCTGCTGCTATGGC+TGG | - | chr4.3:16686697-16686716 | MS.gene023375:CDS | 50.0% | |
| TTGGAGCGAGATTCTTCAGG+AGG | + | chr4.3:16686673-16686692 | None:intergenic | 50.0% | |
| ! | GGTAGTGGTGTTCCTGTCTT+TGG | - | chr4.3:16687135-16687154 | MS.gene023375:CDS | 50.0% |
| !! | GCTTTGGAGCGAGATTCTTC+AGG | + | chr4.3:16686676-16686695 | None:intergenic | 50.0% |
| !! | GTTGCTGCTGATTTGGAGGA+GGG | + | chr4.3:16687182-16687201 | None:intergenic | 50.0% |
| !! | TGTTGCTGCTGATTTGGAGG+AGG | + | chr4.3:16687183-16687202 | None:intergenic | 50.0% |
| !! | TTGCTGCTGATTTGGAGGAG+GGG | + | chr4.3:16687181-16687200 | None:intergenic | 50.0% |
| ACAGGAACACCACTACCAGG+AGG | + | chr4.3:16687132-16687151 | None:intergenic | 55.0% | |
| ATCATCTGTCCAGGAGGAGG+TGG | + | chr4.3:16687051-16687070 | None:intergenic | 55.0% | |
| ATGCCATATCCCGGTATGCC+AGG | - | chr4.3:16686910-16686929 | MS.gene023375:CDS | 55.0% | |
| CAAGACGGTCGTCAACTCGT+CGG | - | chr4.3:16686466-16686485 | MS.gene023375:CDS | 55.0% | |
| CCTCCTCATCCTGGAATGCA+GGG | - | chr4.3:16687081-16687100 | MS.gene023375:CDS | 55.0% | |
| CCTCCTGGACAGATGATGAG+AGG | - | chr4.3:16687054-16687073 | MS.gene023375:CDS | 55.0% | |
| CCTCTCATCATCTGTCCAGG+AGG | + | chr4.3:16687057-16687076 | None:intergenic | 55.0% | |
| CCTGGTCAGATGCCATATCC+CGG | - | chr4.3:16686901-16686920 | MS.gene023375:CDS | 55.0% | |
| CGAGATTCTTCAGGAGGAGG+AGG | + | chr4.3:16686667-16686686 | None:intergenic | 55.0% | |
| CGCCGAGAACGAGATTCATG+TGG | + | chr4.3:16686513-16686532 | None:intergenic | 55.0% | |
| CTCATCATCTGTCCAGGAGG+AGG | + | chr4.3:16687054-16687073 | None:intergenic | 55.0% | |
| CTCCTCATCCTGGAATGCAG+GGG | - | chr4.3:16687082-16687101 | MS.gene023375:CDS | 55.0% | |
| CTCTGTCCATACTGAGGAGG+CGG | + | chr4.3:16687018-16687037 | None:intergenic | 55.0% | |
| GAGATTCATGTGGCGGTCGA+AGG | + | chr4.3:16686503-16686522 | None:intergenic | 55.0% | |
| GAGCGAGATTCTTCAGGAGG+AGG | + | chr4.3:16686670-16686689 | None:intergenic | 55.0% | |
| GCTTGAATAACTGTCGCCGG+AGG | + | chr4.3:16686760-16686779 | None:intergenic | 55.0% | |
| GGACCACCAGGATACGAAAC+CGG | + | chr4.3:16686862-16686881 | None:intergenic | 55.0% | |
| GGAGGCGGCATACCAAATTG+CGG | + | chr4.3:16687003-16687022 | None:intergenic | 55.0% | |
| GGATATGGCATCTGACCAGG+CGG | + | chr4.3:16686901-16686920 | None:intergenic | 55.0% | |
| GGCATACCAAATTGCGGTGG+AGG | + | chr4.3:16686997-16687016 | None:intergenic | 55.0% | |
| GGTCCTCTCATCATCTGTCC+AGG | + | chr4.3:16687060-16687079 | None:intergenic | 55.0% | |
| GGTCTCGGAGGAGCAAATTG+CGG | + | chr4.3:16686964-16686983 | None:intergenic | 55.0% | |
| GGTCTCTGTCCATACTGAGG+AGG | + | chr4.3:16687021-16687040 | None:intergenic | 55.0% | |
| TCATCTGTCCAGGAGGAGGT+GGG | + | chr4.3:16687050-16687069 | None:intergenic | 55.0% | |
| TCCTCCTCATCCTGGAATGC+AGG | - | chr4.3:16687080-16687099 | MS.gene023375:CDS | 55.0% | |
| TGAATAACTGTCGCCGGAGG+AGG | + | chr4.3:16686757-16686776 | None:intergenic | 55.0% | |
| TGCATTCCAGGATGAGGAGG+AGG | + | chr4.3:16687081-16687100 | None:intergenic | 55.0% | |
| TGGAAACAACCTCTTCGCCG+CGG | + | chr4.3:16686630-16686649 | None:intergenic | 55.0% | |
| TTCGTATCCTGGTGGTCCTC+CGG | - | chr4.3:16686864-16686883 | MS.gene023375:CDS | 55.0% | |
| ! | CAATTTGCTCCTCCGAGACC+TGG | - | chr4.3:16686964-16686983 | MS.gene023375:CDS | 55.0% |
| ! | CTGGAATTGGTCGTGCTGCT+GGG | - | chr4.3:16686722-16686741 | MS.gene023375:CDS | 55.0% |
| ! | GCTATGGCTGGTCCTGGAAT+TGG | - | chr4.3:16686709-16686728 | MS.gene023375:CDS | 55.0% |
| !! | TGCTGCTGATTTGGAGGAGG+GGG | + | chr4.3:16687180-16687199 | None:intergenic | 55.0% |
| !! | TGGGAGAGGTATTCCTCCTC+CGG | - | chr4.3:16686741-16686760 | MS.gene023375:CDS | 55.0% |
| AAACAACCTCTTCGCCGCGG+AGG | + | chr4.3:16686627-16686646 | None:intergenic | 60.0% | |
| ACACCACTACCAGGAGGAGG+AGG | + | chr4.3:16687126-16687145 | None:intergenic | 60.0% | |
| ACCGGTGGACGCGAGATTTG+CGG | + | chr4.3:16686844-16686863 | None:intergenic | 60.0% | |
| AGAGGACCTCCTCCTCATCC+TGG | - | chr4.3:16687072-16687091 | MS.gene023375:CDS | 60.0% | |
| ATGCCTCCTCCTCCTGGTAG+TGG | - | chr4.3:16687120-16687139 | MS.gene023375:CDS | 60.0% | |
| CCACCAGGATACGAAACCGG+TGG | + | chr4.3:16686859-16686878 | None:intergenic | 60.0% | |
| CCACCTGGCATACCGGGATA+TGG | + | chr4.3:16686916-16686935 | None:intergenic | 60.0% | |
| CCAGCAGCACGACCAATTCC+AGG | + | chr4.3:16686724-16686743 | None:intergenic | 60.0% | |
| CCATATCCCGGTATGCCAGG+TGG | - | chr4.3:16686913-16686932 | MS.gene023375:CDS | 60.0% | |
| CCCTGCATTCCAGGATGAGG+AGG | + | chr4.3:16687084-16687103 | None:intergenic | 60.0% | |
| CCGGGATATGGCATCTGACC+AGG | + | chr4.3:16686904-16686923 | None:intergenic | 60.0% | |
| CCTGGAATTGGTCGTGCTGC+TGG | - | chr4.3:16686721-16686740 | MS.gene023375:CDS | 60.0% | |
| CGAACAGGACCAGCAAGACC+AGG | + | chr4.3:16686787-16686806 | None:intergenic | 60.0% | |
| CTCGGAGGAGCAAATTGCGG+TGG | + | chr4.3:16686961-16686980 | None:intergenic | 60.0% | |
| GCTGGTCCTGTTCGTGGTGT+TGG | - | chr4.3:16686793-16686812 | MS.gene023375:CDS | 60.0% | |
| GGAACACCACTACCAGGAGG+AGG | + | chr4.3:16687129-16687148 | None:intergenic | 60.0% | |
| GGACGAGGTGGACCAAAGAC+AGG | + | chr4.3:16687150-16687169 | None:intergenic | 60.0% | |
| GGAGGAGCAAATTGCGGTGG+CGG | + | chr4.3:16686958-16686977 | None:intergenic | 60.0% | |
| GGCGGCATACCAAATTGCGG+TGG | + | chr4.3:16687000-16687019 | None:intergenic | 60.0% | |
| GGCTGCATCATACCAGGAGC+AGG | + | chr4.3:16686823-16686842 | None:intergenic | 60.0% | |
| GGTATGCCGCCTCCTCAGTA+TGG | - | chr4.3:16687009-16687028 | MS.gene023375:CDS | 60.0% | |
| GGTCCACCAACACCACGAAC+AGG | + | chr4.3:16686802-16686821 | None:intergenic | 60.0% | |
| GGTCCTCCTCCACCGCAATT+TGG | - | chr4.3:16686988-16687007 | MS.gene023375:CDS | 60.0% | |
| GGTCTTGCTGGTCCTGTTCG+TGG | - | chr4.3:16686787-16686806 | MS.gene023375:CDS | 60.0% | |
| GTCTTTGGTCCACCTCGTCC+CGG | - | chr4.3:16687150-16687169 | MS.gene023375:CDS | 60.0% | |
| TATGGCATCTGACCAGGCGG+TGG | + | chr4.3:16686898-16686917 | None:intergenic | 60.0% | |
| TTTGCTCCTCCGAGACCTGG+TGG | - | chr4.3:16686967-16686986 | MS.gene023375:CDS | 60.0% | |
| ! | ATTGGTCGTGCTGCTGGGAG+AGG | - | chr4.3:16686727-16686746 | MS.gene023375:CDS | 60.0% |
| ! | ATTTGGAGGAGGGGGCATGC+CGG | + | chr4.3:16687172-16687191 | None:intergenic | 60.0% |
| ! | GGTCCTGTTCGTGGTGTTGG+TGG | - | chr4.3:16686796-16686815 | MS.gene023375:CDS | 60.0% |
| !! | ACCAGGAGGAGGAGGCATTC+CGG | + | chr4.3:16687118-16687137 | None:intergenic | 60.0% |
| !! | CAAGCTCAGCCTGGTCTTGC+TGG | - | chr4.3:16686775-16686794 | MS.gene023375:CDS | 60.0% |
| !! | CCACCGGTTTCGTATCCTGG+TGG | - | chr4.3:16686856-16686875 | MS.gene023375:CDS | 60.0% |
| !! | CGTCCACCGGTTTCGTATCC+TGG | - | chr4.3:16686853-16686872 | MS.gene023375:CDS | 60.0% |
| CGAGTGTGCGGCGGTCTTCA+CGG | + | chr4.3:16686594-16686613 | None:intergenic | 65.0% | |
| CGGAGGACCACCTGGCATAC+CGG | + | chr4.3:16686923-16686942 | None:intergenic | 65.0% | |
| CGTGAAGACCGCCGCACACT+CGG | - | chr4.3:16686592-16686611 | MS.gene023375:CDS | 65.0% | |
| GCCGCAAATCTCGCGTCCAC+CGG | - | chr4.3:16686840-16686859 | MS.gene023375:CDS | 65.0% | |
| GCGGTCTTCACGGTCACCGT+CGG | + | chr4.3:16686584-16686603 | None:intergenic | 65.0% | |
| GGAGGACCACCTGGCATACC+GGG | + | chr4.3:16686922-16686941 | None:intergenic | 65.0% | |
| GGAGGAGAAGGCCGAGTGTG+CGG | + | chr4.3:16686606-16686625 | None:intergenic | 65.0% | |
| GGAGGAGGACCACCAGGTCT+CGG | + | chr4.3:16686979-16686998 | None:intergenic | 65.0% | |
| GGCCCCTGCATTCCAGGATG+AGG | + | chr4.3:16687087-16687106 | None:intergenic | 65.0% | |
| GTCTTCACGGTCACCGTCGG+TGG | + | chr4.3:16686581-16686600 | None:intergenic | 65.0% | |
| ! | GCTGCTGCTATGGCTGGTCC+TGG | - | chr4.3:16686703-16686722 | MS.gene023375:CDS | 65.0% |
| ! | TTTGGAGGAGGGGGCATGCC+GGG | + | chr4.3:16687171-16687190 | None:intergenic | 65.0% |
| !! | AATTGCGGTGGCGGACCACC+TGG | + | chr4.3:16686949-16686968 | None:intergenic | 65.0% |
| !! | CCAGGAGGAGGAGGCATTCC+GGG | + | chr4.3:16687117-16687136 | None:intergenic | 65.0% |
| !! | GGTGTTGGTGGACCTGCTCC+TGG | - | chr4.3:16686808-16686827 | MS.gene023375:CDS | 65.0% |
| CAACCTCTTCGCCGCGGAGG+AGG | + | chr4.3:16686624-16686643 | None:intergenic | 70.0% | |
| CCAGGAGGAGGTGGGCCCAT+AGG | + | chr4.3:16687042-16687061 | None:intergenic | 70.0% | |
| CCAGGCGGTGGACGCATCAC+CGG | + | chr4.3:16686886-16686905 | None:intergenic | 70.0% | |
| CCAGGTGGTCCTCCGAGACC+AGG | - | chr4.3:16686928-16686947 | MS.gene023375:CDS | 70.0% | |
| CCCGGAATGCCTCCTCCTCC+TGG | - | chr4.3:16687114-16687133 | MS.gene023375:CDS | 70.0% | |
| CCTATGGGCCCACCTCCTCC+TGG | - | chr4.3:16687039-16687058 | MS.gene023375:CDS | 70.0% | |
| CCTGGTCTCGGAGGACCACC+TGG | + | chr4.3:16686931-16686950 | None:intergenic | 70.0% | |
| CGCATCACCGGAGGACCACC+AGG | + | chr4.3:16686874-16686893 | None:intergenic | 70.0% | |
| CTCGGCCTTCTCCTCCTCCG+CGG | - | chr4.3:16686610-16686629 | MS.gene023375:CDS | 70.0% | |
| CTTCGCCGCGGAGGAGGAGA+AGG | + | chr4.3:16686618-16686637 | None:intergenic | 70.0% | |
| GGAGAAGGCCGAGTGTGCGG+CGG | + | chr4.3:16686603-16686622 | None:intergenic | 70.0% | |
| GGAGGACCACCAGGTCTCGG+AGG | + | chr4.3:16686976-16686995 | None:intergenic | 70.0% | |
| GGTGGTCCTCCGAGACCAGG+TGG | - | chr4.3:16686931-16686950 | MS.gene023375:CDS | 70.0% | |
| TCTCCTCCTCCGCGGCGAAG+AGG | - | chr4.3:16686618-16686637 | MS.gene023375:CDS | 70.0% | |
| TGCGGTGGAGGAGGACCACC+AGG | + | chr4.3:16686985-16687004 | None:intergenic | 70.0% | |
| !! | GGAGGAGGCATTCCGGGACG+AGG | + | chr4.3:16687111-16687130 | None:intergenic | 70.0% |
| !! | GGAGGCATTCCGGGACGAGG+CGG | + | chr4.3:16687108-16687127 | None:intergenic | 70.0% |
| !! | GGTGGCGGACCACCTGGTCT+CGG | + | chr4.3:16686943-16686962 | None:intergenic | 70.0% |
| ATGCAGGGGCCGCCTCGTCC+CGG | - | chr4.3:16687096-16687115 | MS.gene023375:CDS | 75.0% | |
| CCGGTGATGCGTCCACCGCC+TGG | - | chr4.3:16686883-16686902 | MS.gene023375:CDS | 75.0% | |
| CGAGGCGGCCCCTGCATTCC+AGG | + | chr4.3:16687093-16687112 | None:intergenic | 75.0% | |
| GGCGGACCACCTGGTCTCGG+AGG | + | chr4.3:16686940-16686959 | None:intergenic | 75.0% | |
| GGCGGTGGACGCATCACCGG+AGG | + | chr4.3:16686883-16686902 | None:intergenic | 75.0% | |
| !! | GGAGGGGGCATGCCGGGACG+AGG | + | chr4.3:16687165-16687184 | None:intergenic | 80.0% |
| !! | GGGGGCATGCCGGGACGAGG+TGG | + | chr4.3:16687162-16687181 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 16686403 | 16687212 | 16686403 | ID=MS.gene023375 |
| chr4.3 | mRNA | 16686403 | 16687212 | 16686403 | ID=MS.gene023375.t1;Parent=MS.gene023375 |
| chr4.3 | exon | 16686403 | 16687212 | 16686403 | ID=MS.gene023375.t1.exon1;Parent=MS.gene023375.t1 |
| chr4.3 | CDS | 16686403 | 16687212 | 16686403 | ID=cds.MS.gene023375.t1;Parent=MS.gene023375.t1 |
| Gene Sequence |
| Protein sequence |
