Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79126.t1 | XP_003601832.1 | 100 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 2.10E-110 | 408.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79126.t1 | Q9LU93 | 88.0 | 208 | 24 | 1 | 1 | 207 | 1 | 208 | 2.5e-99 | 362.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79126.t1 | G7J2H6 | 100.0 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 1.5e-110 | 408.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene79126 | 0.810015 | 1.42E-50 | -1.69E-46 |
| MS.gene049596 | MS.gene79126 | 0.822559 | 2.22E-53 | -1.69E-46 |
| MS.gene049622 | MS.gene79126 | 0.80628 | 8.88E-50 | -1.69E-46 |
| MS.gene04985 | MS.gene79126 | 0.843705 | 1.19E-58 | -1.69E-46 |
| MS.gene049989 | MS.gene79126 | 0.889547 | 2.20E-73 | -1.69E-46 |
| MS.gene050297 | MS.gene79126 | 0.87859 | 2.48E-69 | -1.69E-46 |
| MS.gene050310 | MS.gene79126 | 0.832834 | 7.54E-56 | -1.69E-46 |
| MS.gene050648 | MS.gene79126 | 0.846752 | 1.78E-59 | -1.69E-46 |
| MS.gene05124 | MS.gene79126 | 0.811224 | 7.79E-51 | -1.69E-46 |
| MS.gene051263 | MS.gene79126 | 0.87601 | 1.96E-68 | -1.69E-46 |
| MS.gene051478 | MS.gene79126 | 0.851879 | 6.66E-61 | -1.69E-46 |
| MS.gene051629 | MS.gene79126 | 0.833412 | 5.41E-56 | -1.69E-46 |
| MS.gene051955 | MS.gene79126 | 0.817491 | 3.21E-52 | -1.69E-46 |
| MS.gene052143 | MS.gene79126 | 0.830741 | 2.48E-55 | -1.69E-46 |
| MS.gene052367 | MS.gene79126 | 0.867643 | 1.18E-65 | -1.69E-46 |
| MS.gene053173 | MS.gene79126 | 0.836371 | 9.73E-57 | -1.69E-46 |
| MS.gene053348 | MS.gene79126 | 0.810439 | 1.15E-50 | -1.69E-46 |
| MS.gene053416 | MS.gene79126 | 0.839854 | 1.24E-57 | -1.69E-46 |
| MS.gene053417 | MS.gene79126 | 0.842146 | 3.09E-58 | -1.69E-46 |
| MS.gene05369 | MS.gene79126 | 0.803424 | 3.51E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene79126 | 0.837516 | 4.96E-57 | -1.69E-46 |
| MS.gene054643 | MS.gene79126 | 0.853185 | 2.82E-61 | -1.69E-46 |
| MS.gene055308 | MS.gene79126 | 0.826624 | 2.45E-54 | -1.69E-46 |
| MS.gene055411 | MS.gene79126 | 0.809491 | 1.84E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene79126 | 0.817015 | 4.11E-52 | -1.69E-46 |
| MS.gene055957 | MS.gene79126 | 0.873288 | 1.65E-67 | -1.69E-46 |
| MS.gene056041 | MS.gene79126 | 0.857305 | 1.79E-62 | -1.69E-46 |
| MS.gene056042 | MS.gene79126 | 0.849633 | 2.85E-60 | -1.69E-46 |
| MS.gene056228 | MS.gene79126 | 0.806061 | 9.88E-50 | -1.69E-46 |
| MS.gene057458 | MS.gene79126 | 0.812413 | 4.29E-51 | -1.69E-46 |
| MS.gene057483 | MS.gene79126 | 0.824439 | 8.07E-54 | -1.69E-46 |
| MS.gene058196 | MS.gene79126 | 0.815091 | 1.10E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene79126 | 0.833819 | 4.28E-56 | -1.69E-46 |
| MS.gene058198 | MS.gene79126 | 0.83597 | 1.23E-56 | -1.69E-46 |
| MS.gene058818 | MS.gene79126 | 0.845288 | 4.46E-59 | -1.69E-46 |
| MS.gene058844 | MS.gene79126 | 0.820323 | 7.29E-53 | -1.69E-46 |
| MS.gene059300 | MS.gene79126 | 0.854374 | 1.28E-61 | -1.69E-46 |
| MS.gene059553 | MS.gene79126 | 0.802589 | 5.22E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene79126 | 0.855828 | 4.85E-62 | -1.69E-46 |
| MS.gene060565 | MS.gene79126 | 0.858375 | 8.60E-63 | -1.69E-46 |
| MS.gene06057 | MS.gene79126 | 0.888953 | 3.74E-73 | -1.69E-46 |
| MS.gene06093 | MS.gene79126 | 0.82992 | 3.93E-55 | -1.69E-46 |
| MS.gene061099 | MS.gene79126 | 0.816276 | 6.01E-52 | -1.69E-46 |
| MS.gene061260 | MS.gene79126 | 0.837181 | 6.05E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79126.t1 | MTR_3g085940 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 7.78e-155 | 427 |
| MS.gene79126.t1 | MTR_3g085940 | 100.000 | 155 | 0 | 0 | 53 | 207 | 1 | 155 | 1.41e-113 | 320 |
| MS.gene79126.t1 | MTR_3g085940 | 96.753 | 154 | 5 | 0 | 1 | 154 | 1 | 154 | 7.38e-107 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79126.t1 | AT3G25980 | 87.981 | 208 | 24 | 1 | 1 | 207 | 1 | 208 | 1.41e-136 | 381 |
| MS.gene79126.t1 | AT3G25980 | 85.577 | 208 | 25 | 2 | 1 | 207 | 1 | 204 | 1.48e-130 | 365 |
| MS.gene79126.t1 | AT3G25980 | 87.742 | 155 | 19 | 0 | 53 | 207 | 1 | 155 | 2.29e-101 | 290 |
| MS.gene79126.t1 | AT3G25980 | 87.742 | 155 | 19 | 0 | 53 | 207 | 1 | 155 | 2.29e-101 | 290 |
Find 49 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAACCGCTCAGCTTTC+TGG | 0.243002 | 3.1:+68698883 | MS.gene79126:CDS |
| ACGAAGAGTGATTATGTCTT+TGG | 0.305082 | 3.1:-68698485 | None:intergenic |
| AGCGGTTAAATTGGTTATAA+AGG | 0.310452 | 3.1:-68698872 | None:intergenic |
| AGAAAGCTGAGCGGTTAAAT+TGG | 0.334716 | 3.1:-68698881 | None:intergenic |
| TGCTGAAATTCCACCTTTCA+AGG | 0.344954 | 3.1:-68699724 | None:intergenic |
| AACCAGGATATGCTGCTAAC+AGG | 0.352861 | 3.1:+68698634 | MS.gene79126:intron |
| ACCTTCACAAAGCTTTCTTC+TGG | 0.383617 | 3.1:-68698799 | None:intergenic |
| TTCAGGTGTGTTTGATGTGT+TGG | 0.386152 | 3.1:+68699975 | MS.gene79126:intron |
| GAATGCAGTTTCACCATTTG+TGG | 0.390803 | 3.1:-68700066 | None:intergenic |
| TGTGGATTAGCAATCAGCTT+TGG | 0.412638 | 3.1:-68700048 | None:intergenic |
| CGAAGCAATCTGCCTCATAA+TGG | 0.420953 | 3.1:-68699825 | None:intergenic |
| TTCATCCAAGCATGGCAAAT+AGG | 0.430316 | 3.1:-68699855 | None:intergenic |
| ACTGCATTCCTTTGATACTA+AGG | 0.432948 | 3.1:+68700080 | MS.gene79126:CDS |
| TTTGTGAAGGTGAAGAAATA+TGG | 0.439428 | 3.1:+68698811 | MS.gene79126:CDS |
| TATCACCTATTTGCCATGCT+TGG | 0.458416 | 3.1:+68699850 | MS.gene79126:CDS |
| GCAATCGTTAGCGAGTTCTT+CGG | 0.465376 | 3.1:+68698517 | MS.gene79126:CDS |
| GGAAATCATGAGAGAGATAC+AGG | 0.478386 | 3.1:+68699802 | MS.gene79126:CDS |
| GCTGATTGCTAATCCACAAA+TGG | 0.506949 | 3.1:+68700053 | MS.gene79126:CDS |
| TCACTCTCAGTCCAAGTGAA+TGG | 0.507147 | 3.1:-68700024 | None:intergenic |
| AAAGACATAATCACTCTTCG+TGG | 0.509870 | 3.1:+68698487 | MS.gene79126:CDS |
| TGTCGAGAAGGGCGAGTCAA+GGG | 0.513652 | 3.1:+68699766 | MS.gene79126:CDS |
| GATAAACACCTCGATTGTAA+AGG | 0.522252 | 3.1:-68698777 | None:intergenic |
| GAGAGATACAGGCCATTATG+AGG | 0.523727 | 3.1:+68699813 | MS.gene79126:CDS |
| ATCATACAAGAACGACGAAT+GGG | 0.527471 | 3.1:+68700212 | MS.gene79126:CDS |
| TCCAGAAGAAAGCTTTGTGA+AGG | 0.536393 | 3.1:+68698798 | MS.gene79126:CDS |
| TTGTCGAGAAGGGCGAGTCA+AGG | 0.542198 | 3.1:+68699765 | MS.gene79126:CDS |
| TGATAACGAGGTTGTCGAGA+AGG | 0.548204 | 3.1:+68699754 | MS.gene79126:CDS |
| TTCAGCATCCTTTACAATCG+AGG | 0.552090 | 3.1:+68698769 | MS.gene79126:intron |
| TGAAAAGAATGGCTTGAAGC+TGG | 0.556155 | 3.1:+68699650 | MS.gene79126:intron |
| ATGTGGAAGTTCCATTCACT+TGG | 0.563681 | 3.1:+68700013 | MS.gene79126:CDS |
| AAATTGCACCTTAGTATCAA+AGG | 0.565710 | 3.1:-68700088 | None:intergenic |
| GATAACGAGGTTGTCGAGAA+GGG | 0.569913 | 3.1:+68699755 | MS.gene79126:CDS |
| GTTATAATGAGCAAGTCCAC+TGG | 0.576805 | 3.1:+68699695 | MS.gene79126:CDS |
| TATCATACAAGAACGACGAA+TGG | 0.597347 | 3.1:+68700211 | MS.gene79126:CDS |
| CCACTGGTGAAGTCCTTGAA+AGG | 0.598488 | 3.1:+68699711 | MS.gene79126:CDS |
| CAGCATTGAGACTGATAACG+AGG | 0.605364 | 3.1:+68699742 | MS.gene79126:CDS |
| CCTTTCAAGGACTTCACCAG+TGG | 0.608166 | 3.1:-68699711 | None:intergenic |
| CTGGTGAAGTCCTTGAAAGG+TGG | 0.608400 | 3.1:+68699714 | MS.gene79126:CDS |
| TTTGGTTATGCAGATTCACA+AGG | 0.610649 | 3.1:+68700176 | MS.gene79126:intron |
| CTTCAGTAAGCAACATCGGA+AGG | 0.612019 | 3.1:-68698834 | None:intergenic |
| TTGAAGCTGGCAAGTTACAG+AGG | 0.628270 | 3.1:+68699663 | MS.gene79126:CDS |
| GATGTTGCTTACTGAAGATG+AGG | 0.636613 | 3.1:+68698840 | MS.gene79126:CDS |
| GGCATATACTAACACAGATG+TGG | 0.641456 | 3.1:+68699996 | MS.gene79126:CDS |
| TCATCTTCAGTAAGCAACAT+CGG | 0.643466 | 3.1:-68698838 | None:intergenic |
| ATACAAGGTTCATCCAAGCA+TGG | 0.651912 | 3.1:-68699863 | None:intergenic |
| GTCAAGGGAGAAGAGTGACA+AGG | 0.685729 | 3.1:+68699781 | MS.gene79126:CDS |
| TGGACTTGCTCATTATAACA+AGG | 0.691125 | 3.1:-68699691 | None:intergenic |
| ATGTTGCTTACTGAAGATGA+GGG | 0.718973 | 3.1:+68698841 | MS.gene79126:CDS |
| TTAGTTACCAGAAAGCTGAG+CGG | 0.758740 | 3.1:-68698890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAAATCTCAATATTA+TGG | - | chr3.1:68699528-68699547 | None:intergenic | 10.0% |
| !! | AATTGATAAAATTTAAGTGT+TGG | + | chr3.1:68698988-68699007 | MS.gene79126:intron | 15.0% |
| !! | ATTGATAAAATTTAAGTGTT+GGG | + | chr3.1:68698989-68699008 | MS.gene79126:intron | 15.0% |
| !!! | ATTTTAATAATGTTCTGTTA+TGG | + | chr3.1:68699538-68699557 | MS.gene79126:intron | 15.0% |
| !!! | TTTTTTTGTGATATCATTTT+AGG | + | chr3.1:68699335-68699354 | MS.gene79126:intron | 15.0% |
| !! | ACAAAGTAAATTGGTTATAA+AGG | - | chr3.1:68698961-68698980 | None:intergenic | 20.0% |
| !! | CAAAGTAAATTGGTTATAAA+GGG | - | chr3.1:68698960-68698979 | None:intergenic | 20.0% |
| !! | TTATAGAAAGAAACAAAGTA+GGG | - | chr3.1:68698925-68698944 | None:intergenic | 20.0% |
| !! | TTTCTCTAAACAAAGTAAAT+TGG | - | chr3.1:68698970-68698989 | None:intergenic | 20.0% |
| !!! | AAGGGTTTTGTTTATTTTAT+TGG | + | chr3.1:68698739-68698758 | MS.gene79126:intron | 20.0% |
| !!! | ACATGTATACTTTTTTGTTA+TGG | + | chr3.1:68699227-68699246 | MS.gene79126:intron | 20.0% |
| !!! | AGGGTTTTGTTTATTTTATT+GGG | + | chr3.1:68698740-68698759 | MS.gene79126:intron | 20.0% |
| !!! | GCTATAAGTAATACTTATTT+TGG | + | chr3.1:68700158-68700177 | MS.gene79126:intron | 20.0% |
| !!! | TTGCTTATACTATTTTGTTA+TGG | + | chr3.1:68699443-68699462 | MS.gene79126:intron | 20.0% |
| !!! | TTGTTTATACTATTTTGTTG+TGG | + | chr3.1:68699390-68699409 | MS.gene79126:intron | 20.0% |
| !!! | TTTGTGATATTGATTAACAA+GGG | + | chr3.1:68698721-68698740 | MS.gene79126:intron | 20.0% |
| !!! | TTTTGTGATATTGATTAACA+AGG | + | chr3.1:68698720-68698739 | MS.gene79126:intron | 20.0% |
| ! | AGCACAAAAAAAATAATCAG+TGG | - | chr3.1:68698607-68698626 | None:intergenic | 25.0% |
| ! | ATTCAAACAGTTTAATCATC+AGG | - | chr3.1:68699628-68699647 | None:intergenic | 25.0% |
| ! | CAGTCGATAAATAACAAAAT+TGG | - | chr3.1:68700121-68700140 | None:intergenic | 25.0% |
| ! | CATTTCATTTGACAAAATCA+CGG | + | chr3.1:68699056-68699075 | MS.gene79126:intron | 25.0% |
| ! | GTAGAAAAATGAGTGAAATT+GGG | - | chr3.1:68698571-68698590 | None:intergenic | 25.0% |
| ! | GTTATAAAGGGTTGTTAAAT+TGG | - | chr3.1:68698948-68698967 | None:intergenic | 25.0% |
| ! | GTTATAGAAAGAAACAAAGT+AGG | - | chr3.1:68698926-68698945 | None:intergenic | 25.0% |
| ! | TAAGTATTACTTATAGCCAA+AGG | - | chr3.1:68700155-68700174 | None:intergenic | 25.0% |
| ! | TAGAAAAATGAGTGAAATTG+GGG | - | chr3.1:68698570-68698589 | None:intergenic | 25.0% |
| ! | TGTAGAAAAATGAGTGAAAT+TGG | - | chr3.1:68698572-68698591 | None:intergenic | 25.0% |
| ! | TGTTTGAATGTTGAAAAGAA+TGG | + | chr3.1:68699639-68699658 | MS.gene79126:intron | 25.0% |
| !! | GTTTGATTCTCTTTGTTTAA+GGG | + | chr3.1:68698656-68698675 | MS.gene79126:intron | 25.0% |
| !! | TTTTATCTCCTAGTTGAATT+TGG | + | chr3.1:68699944-68699963 | MS.gene79126:intron | 25.0% |
| !!! | GTTTTTTTGTGATATCATTG+TGG | + | chr3.1:68699596-68699615 | MS.gene79126:intron | 25.0% |
| AAAGAAACAAAGTAGGGTTA+GGG | - | chr3.1:68698919-68698938 | None:intergenic | 30.0% | |
| AAATTGCACCTTAGTATCAA+AGG | - | chr3.1:68700091-68700110 | None:intergenic | 30.0% | |
| AACAGTTTAATCATCAGGAA+CGG | - | chr3.1:68699623-68699642 | None:intergenic | 30.0% | |
| ACAAATAGCCAAATTCAACT+AGG | - | chr3.1:68699955-68699974 | None:intergenic | 30.0% | |
| ACTCACTCTCAAATTCAATT+AGG | - | chr3.1:68699575-68699594 | None:intergenic | 30.0% | |
| AGCGGTTAAATTGGTTATAA+AGG | - | chr3.1:68698875-68698894 | None:intergenic | 30.0% | |
| CTCAATATTATGGTTCACAA+TGG | - | chr3.1:68699518-68699537 | None:intergenic | 30.0% | |
| TAATTGAATTTGAGAGTGAG+TGG | + | chr3.1:68699574-68699593 | MS.gene79126:intron | 30.0% | |
| TGAATTTGGCTATTTGTTTC+AGG | + | chr3.1:68699958-68699977 | MS.gene79126:intron | 30.0% | |
| TTTGATACTAAGGTGCAATT+TGG | + | chr3.1:68700090-68700109 | MS.gene79126:intron | 30.0% | |
| TTTGTGAAGGTGAAGAAATA+TGG | + | chr3.1:68698811-68698830 | MS.gene79126:CDS | 30.0% | |
| ! | GGTTTGATTCTCTTTGTTTA+AGG | + | chr3.1:68698655-68698674 | MS.gene79126:intron | 30.0% |
| ! | GTTGACTCAATAATTTGAGT+AGG | - | chr3.1:68699313-68699332 | None:intergenic | 30.0% |
| ! | TAGATTTTGCAAAGTCAATC+TGG | + | chr3.1:68699111-68699130 | MS.gene79126:intron | 30.0% |
| !! | TTGTTATTTATCGACTGACA+TGG | + | chr3.1:68700124-68700143 | MS.gene79126:intron | 30.0% |
| AAAGACATAATCACTCTTCG+TGG | + | chr3.1:68698487-68698506 | MS.gene79126:CDS | 35.0% | |
| ACGAAGAGTGATTATGTCTT+TGG | - | chr3.1:68698488-68698507 | None:intergenic | 35.0% | |
| ACTGCATTCCTTTGATACTA+AGG | + | chr3.1:68700080-68700099 | MS.gene79126:CDS | 35.0% | |
| ATCATACAAGAACGACGAAT+GGG | + | chr3.1:68700212-68700231 | MS.gene79126:CDS | 35.0% | |
| GAAAGAAACAAAGTAGGGTT+AGG | - | chr3.1:68698920-68698939 | None:intergenic | 35.0% | |
| GATAAACACCTCGATTGTAA+AGG | - | chr3.1:68698780-68698799 | None:intergenic | 35.0% | |
| GCAAAAGTGAACATGTTTAC+AGG | - | chr3.1:68699427-68699446 | None:intergenic | 35.0% | |
| GTTTGTCAGAATCAGAATCA+CGG | - | chr3.1:68699141-68699160 | None:intergenic | 35.0% | |
| TAACCCAACTTACATGGATA+AGG | - | chr3.1:68699276-68699295 | None:intergenic | 35.0% | |
| TATAATTCCCAACTCTCCAT+AGG | - | chr3.1:68699022-68699041 | None:intergenic | 35.0% | |
| TATCATACAAGAACGACGAA+TGG | + | chr3.1:68700211-68700230 | MS.gene79126:CDS | 35.0% | |
| TCATCTTCAGTAAGCAACAT+CGG | - | chr3.1:68698841-68698860 | None:intergenic | 35.0% | |
| TCTACATAACCCAACTTACA+TGG | - | chr3.1:68699282-68699301 | None:intergenic | 35.0% | |
| TTTGGTTATGCAGATTCACA+AGG | + | chr3.1:68700176-68700195 | MS.gene79126:intron | 35.0% | |
| ! | AAGCCTTATCCATGTAAGTT+GGG | + | chr3.1:68699270-68699289 | MS.gene79126:intron | 35.0% |
| ! | ATGTTGCTTACTGAAGATGA+GGG | + | chr3.1:68698841-68698860 | MS.gene79126:CDS | 35.0% |
| ! | GAACTTTTAAGCCCATGATT+GGG | - | chr3.1:68699174-68699193 | None:intergenic | 35.0% |
| ! | TGAACTTTTAAGCCCATGAT+TGG | - | chr3.1:68699175-68699194 | None:intergenic | 35.0% |
| ! | TGGACTTGCTCATTATAACA+AGG | - | chr3.1:68699694-68699713 | None:intergenic | 35.0% |
| !!! | TTTTGTGCTATTTTCGAACC+AGG | + | chr3.1:68698618-68698637 | MS.gene79126:intron | 35.0% |
| AATTTAACCGCTCAGCTTTC+TGG | + | chr3.1:68698883-68698902 | MS.gene79126:CDS | 40.0% | |
| ACAGTTACCTATGGAGAGTT+GGG | + | chr3.1:68699012-68699031 | MS.gene79126:intron | 40.0% | |
| ACCTTCACAAAGCTTTCTTC+TGG | - | chr3.1:68698802-68698821 | None:intergenic | 40.0% | |
| ACTCATAGTGAACCCAATCA+TGG | + | chr3.1:68699159-68699178 | MS.gene79126:intron | 40.0% | |
| AGAAAGCTGAGCGGTTAAAT+TGG | - | chr3.1:68698884-68698903 | None:intergenic | 40.0% | |
| ATACAAGGTTCATCCAAGCA+TGG | - | chr3.1:68699866-68699885 | None:intergenic | 40.0% | |
| ATGTGGAAGTTCCATTCACT+TGG | + | chr3.1:68700013-68700032 | MS.gene79126:CDS | 40.0% | |
| CATGGATAAGGCTTGATTGT+TGG | - | chr3.1:68699264-68699283 | None:intergenic | 40.0% | |
| CTCATAGTGAACCCAATCAT+GGG | + | chr3.1:68699160-68699179 | MS.gene79126:intron | 40.0% | |
| GAATGCAGTTTCACCATTTG+TGG | - | chr3.1:68700069-68700088 | None:intergenic | 40.0% | |
| GACTGACATGGTTTATCCTT+TGG | + | chr3.1:68700136-68700155 | MS.gene79126:intron | 40.0% | |
| GCTGATTGCTAATCCACAAA+TGG | + | chr3.1:68700053-68700072 | MS.gene79126:CDS | 40.0% | |
| GGAAATCATGAGAGAGATAC+AGG | + | chr3.1:68699802-68699821 | MS.gene79126:CDS | 40.0% | |
| GGCATATACTAACACAGATG+TGG | + | chr3.1:68699996-68700015 | MS.gene79126:CDS | 40.0% | |
| GTTATAATGAGCAAGTCCAC+TGG | + | chr3.1:68699695-68699714 | MS.gene79126:CDS | 40.0% | |
| TATCACCTATTTGCCATGCT+TGG | + | chr3.1:68699850-68699869 | MS.gene79126:CDS | 40.0% | |
| TCAAAGAGTGACAGCATACA+AGG | - | chr3.1:68699881-68699900 | None:intergenic | 40.0% | |
| TGAAAAGAATGGCTTGAAGC+TGG | + | chr3.1:68699650-68699669 | MS.gene79126:intron | 40.0% | |
| TGCTGAAATTCCACCTTTCA+AGG | - | chr3.1:68699727-68699746 | None:intergenic | 40.0% | |
| TTAGTTACCAGAAAGCTGAG+CGG | - | chr3.1:68698893-68698912 | None:intergenic | 40.0% | |
| TTCAGCATCCTTTACAATCG+AGG | + | chr3.1:68698769-68698788 | MS.gene79126:intron | 40.0% | |
| TTCAGGTGTGTTTGATGTGT+TGG | + | chr3.1:68699975-68699994 | MS.gene79126:intron | 40.0% | |
| TTCATCCAAGCATGGCAAAT+AGG | - | chr3.1:68699858-68699877 | None:intergenic | 40.0% | |
| ! | CAAGCCTTATCCATGTAAGT+TGG | + | chr3.1:68699269-68699288 | MS.gene79126:intron | 40.0% |
| ! | GAGAGTGAGTGATTTTTCTG+AGG | + | chr3.1:68699490-68699509 | MS.gene79126:intron | 40.0% |
| ! | GATGTTGCTTACTGAAGATG+AGG | + | chr3.1:68698840-68698859 | MS.gene79126:CDS | 40.0% |
| ! | TCCAGAAGAAAGCTTTGTGA+AGG | + | chr3.1:68698798-68698817 | MS.gene79126:CDS | 40.0% |
| !! | TGTGGATTAGCAATCAGCTT+TGG | - | chr3.1:68700051-68700070 | None:intergenic | 40.0% |
| AACCAGGATATGCTGCTAAC+AGG | + | chr3.1:68698634-68698653 | MS.gene79126:intron | 45.0% | |
| AACCTGTTAGCAGCATATCC+TGG | - | chr3.1:68698639-68698658 | None:intergenic | 45.0% | |
| CGAAGCAATCTGCCTCATAA+TGG | - | chr3.1:68699828-68699847 | None:intergenic | 45.0% | |
| CTTCAGTAAGCAACATCGGA+AGG | - | chr3.1:68698837-68698856 | None:intergenic | 45.0% | |
| GACAGTTACCTATGGAGAGT+TGG | + | chr3.1:68699011-68699030 | MS.gene79126:intron | 45.0% | |
| GAGAGATACAGGCCATTATG+AGG | + | chr3.1:68699813-68699832 | MS.gene79126:CDS | 45.0% | |
| GATAACGAGGTTGTCGAGAA+GGG | + | chr3.1:68699755-68699774 | MS.gene79126:CDS | 45.0% | |
| GCAATCGTTAGCGAGTTCTT+CGG | + | chr3.1:68698517-68698536 | MS.gene79126:CDS | 45.0% | |
| TCACTCTCAGTCCAAGTGAA+TGG | - | chr3.1:68700027-68700046 | None:intergenic | 45.0% | |
| TTGAAGCTGGCAAGTTACAG+AGG | + | chr3.1:68699663-68699682 | MS.gene79126:CDS | 45.0% | |
| ! | AGTGTTGGGACAGTTACCTA+TGG | + | chr3.1:68699003-68699022 | MS.gene79126:intron | 45.0% |
| ! | CAGCATTGAGACTGATAACG+AGG | + | chr3.1:68699742-68699761 | MS.gene79126:CDS | 45.0% |
| ! | TGATAACGAGGTTGTCGAGA+AGG | + | chr3.1:68699754-68699773 | MS.gene79126:CDS | 45.0% |
| CCACTGGTGAAGTCCTTGAA+AGG | + | chr3.1:68699711-68699730 | MS.gene79126:CDS | 50.0% | |
| CCTTTCAAGGACTTCACCAG+TGG | - | chr3.1:68699714-68699733 | None:intergenic | 50.0% | |
| CTGGTGAAGTCCTTGAAAGG+TGG | + | chr3.1:68699714-68699733 | MS.gene79126:CDS | 50.0% | |
| GTCAAGGGAGAAGAGTGACA+AGG | + | chr3.1:68699781-68699800 | MS.gene79126:CDS | 50.0% | |
| TGTCGAGAAGGGCGAGTCAA+GGG | + | chr3.1:68699766-68699785 | MS.gene79126:CDS | 55.0% | |
| TTGTCGAGAAGGGCGAGTCA+AGG | + | chr3.1:68699765-68699784 | MS.gene79126:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 68698466 | 68700245 | 68698466 | ID=MS.gene79126 |
| chr3.1 | mRNA | 68698466 | 68700245 | 68698466 | ID=MS.gene79126.t1;Parent=MS.gene79126 |
| chr3.1 | exon | 68698466 | 68698538 | 68698466 | ID=MS.gene79126.t1.exon1;Parent=MS.gene79126.t1 |
| chr3.1 | CDS | 68698466 | 68698538 | 68698466 | ID=cds.MS.gene79126.t1;Parent=MS.gene79126.t1 |
| chr3.1 | exon | 68698640 | 68698655 | 68698640 | ID=MS.gene79126.t1.exon2;Parent=MS.gene79126.t1 |
| chr3.1 | CDS | 68698640 | 68698655 | 68698640 | ID=cds.MS.gene79126.t1;Parent=MS.gene79126.t1 |
| chr3.1 | exon | 68698774 | 68698904 | 68698774 | ID=MS.gene79126.t1.exon3;Parent=MS.gene79126.t1 |
| chr3.1 | CDS | 68698774 | 68698904 | 68698774 | ID=cds.MS.gene79126.t1;Parent=MS.gene79126.t1 |
| chr3.1 | exon | 68699657 | 68699881 | 68699657 | ID=MS.gene79126.t1.exon4;Parent=MS.gene79126.t1 |
| chr3.1 | CDS | 68699657 | 68699881 | 68699657 | ID=cds.MS.gene79126.t1;Parent=MS.gene79126.t1 |
| chr3.1 | exon | 68699980 | 68700101 | 68699980 | ID=MS.gene79126.t1.exon5;Parent=MS.gene79126.t1 |
| chr3.1 | CDS | 68699980 | 68700101 | 68699980 | ID=cds.MS.gene79126.t1;Parent=MS.gene79126.t1 |
| chr3.1 | exon | 68700189 | 68700245 | 68700189 | ID=MS.gene79126.t1.exon6;Parent=MS.gene79126.t1 |
| chr3.1 | CDS | 68700189 | 68700245 | 68700189 | ID=cds.MS.gene79126.t1;Parent=MS.gene79126.t1 |
| Gene Sequence |
| Protein sequence |
