Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067039.t1 | XP_003601832.1 | 100 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 2.10E-110 | 408.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067039.t1 | Q9LU93 | 88.0 | 208 | 24 | 1 | 1 | 207 | 1 | 208 | 2.5e-99 | 362.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067039.t1 | G7J2H6 | 100.0 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 1.5e-110 | 408.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene067039 | 0.803921 | 2.77E-49 | -1.69E-46 |
| MS.gene049596 | MS.gene067039 | 0.821771 | 3.38E-53 | -1.69E-46 |
| MS.gene04985 | MS.gene067039 | 0.850138 | 2.06E-60 | -1.69E-46 |
| MS.gene049989 | MS.gene067039 | 0.878121 | 3.63E-69 | -1.69E-46 |
| MS.gene050297 | MS.gene067039 | 0.882386 | 1.09E-70 | -1.69E-46 |
| MS.gene050648 | MS.gene067039 | 0.831784 | 1.37E-55 | -1.69E-46 |
| MS.gene05124 | MS.gene067039 | 0.814857 | 1.24E-51 | -1.69E-46 |
| MS.gene051263 | MS.gene067039 | 0.848948 | 4.43E-60 | -1.69E-46 |
| MS.gene051423 | MS.gene067039 | 0.81053 | 1.10E-50 | -1.69E-46 |
| MS.gene051478 | MS.gene067039 | 0.833698 | 4.59E-56 | -1.69E-46 |
| MS.gene051629 | MS.gene067039 | 0.814303 | 1.65E-51 | -1.69E-46 |
| MS.gene051698 | MS.gene067039 | 0.806938 | 6.45E-50 | -1.69E-46 |
| MS.gene051742 | MS.gene067039 | 0.804425 | 2.17E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene067039 | 0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene052143 | MS.gene067039 | 0.827348 | 1.64E-54 | -1.69E-46 |
| MS.gene052308 | MS.gene067039 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene067039 | 0.893817 | 4.41E-75 | -1.69E-46 |
| MS.gene053173 | MS.gene067039 | 0.865978 | 3.99E-65 | -1.69E-46 |
| MS.gene053348 | MS.gene067039 | 0.800195 | 1.62E-48 | -1.69E-46 |
| MS.gene053416 | MS.gene067039 | 0.859652 | 3.57E-63 | -1.69E-46 |
| MS.gene053417 | MS.gene067039 | 0.864284 | 1.36E-64 | -1.69E-46 |
| MS.gene05369 | MS.gene067039 | 0.808159 | 3.55E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene067039 | 0.858559 | 7.58E-63 | -1.69E-46 |
| MS.gene054593 | MS.gene067039 | 0.818831 | 1.60E-52 | -1.69E-46 |
| MS.gene054643 | MS.gene067039 | 0.869103 | 3.98E-66 | -1.69E-46 |
| MS.gene055308 | MS.gene067039 | 0.845849 | 3.14E-59 | -1.69E-46 |
| MS.gene055411 | MS.gene067039 | 0.801567 | 8.47E-49 | -1.69E-46 |
| MS.gene055578 | MS.gene067039 | 0.845144 | 4.88E-59 | -1.69E-46 |
| MS.gene055957 | MS.gene067039 | 0.873584 | 1.31E-67 | -1.69E-46 |
| MS.gene056041 | MS.gene067039 | 0.872218 | 3.76E-67 | -1.69E-46 |
| MS.gene056042 | MS.gene067039 | 0.811144 | 8.11E-51 | -1.69E-46 |
| MS.gene05640 | MS.gene067039 | 0.808947 | 2.41E-50 | -1.69E-46 |
| MS.gene057367 | MS.gene067039 | 0.800274 | 1.56E-48 | -1.69E-46 |
| MS.gene057458 | MS.gene067039 | 0.836733 | 7.87E-57 | -1.69E-46 |
| MS.gene057483 | MS.gene067039 | 0.868116 | 8.29E-66 | -1.69E-46 |
| MS.gene058197 | MS.gene067039 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene067039 | 0.809546 | 1.79E-50 | -1.69E-46 |
| MS.gene058818 | MS.gene067039 | 0.853111 | 2.97E-61 | -1.69E-46 |
| MS.gene058844 | MS.gene067039 | 0.843763 | 1.15E-58 | -1.69E-46 |
| MS.gene058853 | MS.gene067039 | 0.806073 | 9.82E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene067039 | 0.845501 | 3.90E-59 | -1.69E-46 |
| MS.gene060473 | MS.gene067039 | 0.850776 | 1.36E-60 | -1.69E-46 |
| MS.gene060565 | MS.gene067039 | 0.847616 | 1.03E-59 | -1.69E-46 |
| MS.gene06057 | MS.gene067039 | 0.878428 | 2.83E-69 | -1.69E-46 |
| MS.gene06093 | MS.gene067039 | 0.855588 | 5.70E-62 | -1.69E-46 |
| MS.gene061099 | MS.gene067039 | 0.823538 | 1.31E-53 | -1.69E-46 |
| MS.gene061260 | MS.gene067039 | 0.863146 | 3.06E-64 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067039.t1 | MTR_3g085940 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 7.78e-155 | 427 |
| MS.gene067039.t1 | MTR_3g085940 | 100.000 | 155 | 0 | 0 | 53 | 207 | 1 | 155 | 1.41e-113 | 320 |
| MS.gene067039.t1 | MTR_3g085940 | 96.753 | 154 | 5 | 0 | 1 | 154 | 1 | 154 | 7.38e-107 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067039.t1 | AT3G25980 | 87.981 | 208 | 24 | 1 | 1 | 207 | 1 | 208 | 1.41e-136 | 381 |
| MS.gene067039.t1 | AT3G25980 | 85.577 | 208 | 25 | 2 | 1 | 207 | 1 | 204 | 1.48e-130 | 365 |
| MS.gene067039.t1 | AT3G25980 | 87.742 | 155 | 19 | 0 | 53 | 207 | 1 | 155 | 2.29e-101 | 290 |
| MS.gene067039.t1 | AT3G25980 | 87.742 | 155 | 19 | 0 | 53 | 207 | 1 | 155 | 2.29e-101 | 290 |
Find 49 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAACCGCTCAGCTTTC+TGG | 0.243002 | 3.4:+80198174 | MS.gene067039:CDS |
| ACGAAGAGTGATTATGTCTT+TGG | 0.305082 | 3.4:-80197781 | None:intergenic |
| AGCGGTTAAATTGGTTATAA+AGG | 0.310452 | 3.4:-80198163 | None:intergenic |
| AGAAAGCTGAGCGGTTAAAT+TGG | 0.334716 | 3.4:-80198172 | None:intergenic |
| TGCTGAAATTCCACCTTTCA+AGG | 0.344954 | 3.4:-80199715 | None:intergenic |
| AACCAGGATATGCTGCTAAC+AGG | 0.352861 | 3.4:+80197925 | MS.gene067039:intron |
| ACCTTCACAAAGCTTTCTTC+TGG | 0.383617 | 3.4:-80198090 | None:intergenic |
| TTCAGGTGTGTTTGATGTGT+TGG | 0.386152 | 3.4:+80199965 | MS.gene067039:intron |
| GAATGCAGTTTCACCATTTG+TGG | 0.390803 | 3.4:-80200056 | None:intergenic |
| TGTGGATTAGCAATCAGCTT+TGG | 0.412638 | 3.4:-80200038 | None:intergenic |
| CGAAGCAATCTGCCTCATAA+TGG | 0.420953 | 3.4:-80199816 | None:intergenic |
| TTCATCCAAGCATGGCAAAT+AGG | 0.430316 | 3.4:-80199846 | None:intergenic |
| TTTGTGAAGGTGAAGAAATA+TGG | 0.439428 | 3.4:+80198102 | MS.gene067039:CDS |
| TATCACCTATTTGCCATGCT+TGG | 0.458416 | 3.4:+80199841 | MS.gene067039:CDS |
| GCAATCGTTAGCGAGTTCTT+CGG | 0.465376 | 3.4:+80197813 | MS.gene067039:CDS |
| GGAAATCATGAGAGAGATAC+AGG | 0.478386 | 3.4:+80199793 | MS.gene067039:CDS |
| GCTGATTGCTAATCCACAAA+TGG | 0.506949 | 3.4:+80200043 | MS.gene067039:CDS |
| TCACTCTCAGTCCAAGTGAA+TGG | 0.507147 | 3.4:-80200014 | None:intergenic |
| AAAGACATAATCACTCTTCG+TGG | 0.509870 | 3.4:+80197783 | MS.gene067039:CDS |
| TGTCGAGAAGGGCGAGTCAA+GGG | 0.513652 | 3.4:+80199757 | MS.gene067039:CDS |
| GATAAACACCTCGATTGTAA+AGG | 0.522252 | 3.4:-80198068 | None:intergenic |
| GAGAGATACAGGCCATTATG+AGG | 0.523727 | 3.4:+80199804 | MS.gene067039:CDS |
| ATCATACAAGAACGACGAAT+GGG | 0.527471 | 3.4:+80200202 | MS.gene067039:CDS |
| TCCAGAAGAAAGCTTTGTGA+AGG | 0.536393 | 3.4:+80198089 | MS.gene067039:CDS |
| TTGTCGAGAAGGGCGAGTCA+AGG | 0.542198 | 3.4:+80199756 | MS.gene067039:CDS |
| TGATAACGAGGTTGTCGAGA+AGG | 0.548204 | 3.4:+80199745 | MS.gene067039:CDS |
| TTCAGCATCCTTTACAATCG+AGG | 0.552090 | 3.4:+80198060 | MS.gene067039:intron |
| AAATTGCACCTTGGTATCAA+AGG | 0.555107 | 3.4:-80200078 | None:intergenic |
| TGAAAAGAATGGCTTGAAGC+TGG | 0.556155 | 3.4:+80199641 | MS.gene067039:intron |
| ATGTGGAAGTTCCATTCACT+TGG | 0.563681 | 3.4:+80200003 | MS.gene067039:CDS |
| GATAACGAGGTTGTCGAGAA+GGG | 0.569913 | 3.4:+80199746 | MS.gene067039:CDS |
| GTTATAATGAGCAAGTCCAC+TGG | 0.576805 | 3.4:+80199686 | MS.gene067039:CDS |
| TATCATACAAGAACGACGAA+TGG | 0.597347 | 3.4:+80200201 | MS.gene067039:CDS |
| CCACTGGTGAAGTCCTTGAA+AGG | 0.598488 | 3.4:+80199702 | MS.gene067039:CDS |
| CAGCATTGAGACTGATAACG+AGG | 0.605364 | 3.4:+80199733 | MS.gene067039:CDS |
| CCTTTCAAGGACTTCACCAG+TGG | 0.608166 | 3.4:-80199702 | None:intergenic |
| CTGGTGAAGTCCTTGAAAGG+TGG | 0.608400 | 3.4:+80199705 | MS.gene067039:CDS |
| TTTGGTTATGCAGATTCACA+AGG | 0.610649 | 3.4:+80200166 | MS.gene067039:intron |
| CTTCAGTAAGCAACATCGGA+AGG | 0.612019 | 3.4:-80198125 | None:intergenic |
| ACTGCATTCCTTTGATACCA+AGG | 0.620090 | 3.4:+80200070 | MS.gene067039:CDS |
| TTGAAGCTGGCAAGTTACAG+AGG | 0.628270 | 3.4:+80199654 | MS.gene067039:CDS |
| GATGTTGCTTACTGAAGATG+AGG | 0.636613 | 3.4:+80198131 | MS.gene067039:CDS |
| GGCATATACTAACACAGATG+TGG | 0.641456 | 3.4:+80199986 | MS.gene067039:CDS |
| TCATCTTCAGTAAGCAACAT+CGG | 0.643466 | 3.4:-80198129 | None:intergenic |
| ATACAAGGTTCATCCAAGCA+TGG | 0.651912 | 3.4:-80199854 | None:intergenic |
| GTCAAGGGAGAAGAGTGACA+AGG | 0.685729 | 3.4:+80199772 | MS.gene067039:CDS |
| TGGACTTGCTCATTATAACA+AGG | 0.691125 | 3.4:-80199682 | None:intergenic |
| ATGTTGCTTACTGAAGATGA+GGG | 0.718973 | 3.4:+80198132 | MS.gene067039:CDS |
| TTAGTTACCAGAAAGCTGAG+CGG | 0.758740 | 3.4:-80198181 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAAATCTCAATATTA+TGG | - | chr3.4:80199519-80199538 | None:intergenic | 10.0% |
| !!! | ATCTAAATATTTTTTATTTG+GGG | + | chr3.4:80199154-80199173 | MS.gene067039:intron | 10.0% |
| !!! | GTATCTAAATATTTTTTATT+TGG | + | chr3.4:80199152-80199171 | MS.gene067039:intron | 10.0% |
| !!! | TTTAACAAATAAATTTGTTT+GGG | + | chr3.4:80199129-80199148 | MS.gene067039:intron | 10.0% |
| !!! | TTTTAACAAATAAATTTGTT+TGG | + | chr3.4:80199128-80199147 | MS.gene067039:intron | 10.0% |
| !! | AATTGATAAAATTTAAGTGT+TGG | + | chr3.4:80198279-80198298 | MS.gene067039:intron | 15.0% |
| !! | ATTGATAAAATTTAAGTGTT+GGG | + | chr3.4:80198280-80198299 | MS.gene067039:intron | 15.0% |
| !! | CTTAAAAAGTTATAGTTTAT+TGG | - | chr3.4:80198646-80198665 | None:intergenic | 15.0% |
| !! | TAACACTATTTAAAAAAGTT+AGG | + | chr3.4:80198846-80198865 | MS.gene067039:intron | 15.0% |
| !!! | AAAAAGTATTATTCTTGAAT+AGG | - | chr3.4:80199204-80199223 | None:intergenic | 15.0% |
| !!! | ATTTTAATAATGTTCTGTTA+TGG | + | chr3.4:80199529-80199548 | MS.gene067039:intron | 15.0% |
| !!! | TAAACATATAATGAGTTTTT+TGG | - | chr3.4:80198966-80198985 | None:intergenic | 15.0% |
| !!! | TCAAGAATAATACTTTTTTT+GGG | + | chr3.4:80199206-80199225 | MS.gene067039:intron | 15.0% |
| !!! | TTAACAAATAAATTTGTTTG+GGG | + | chr3.4:80199130-80199149 | MS.gene067039:intron | 15.0% |
| !!! | TTCAAGAATAATACTTTTTT+TGG | + | chr3.4:80199205-80199224 | MS.gene067039:intron | 15.0% |
| !!! | TTTTTTTGTGATATCATTTT+AGG | + | chr3.4:80199326-80199345 | MS.gene067039:intron | 15.0% |
| !! | ACAAAGTAAATTGGTTATAA+AGG | - | chr3.4:80198252-80198271 | None:intergenic | 20.0% |
| !! | AGAAAGTTAAGAAATTACTA+TGG | - | chr3.4:80199095-80199114 | None:intergenic | 20.0% |
| !! | CAAAGTAAATTGGTTATAAA+GGG | - | chr3.4:80198251-80198270 | None:intergenic | 20.0% |
| !! | GAAAGTTAAGAAATTACTAT+GGG | - | chr3.4:80199094-80199113 | None:intergenic | 20.0% |
| !! | TTATAGAAAGAAACAAAGTA+GGG | - | chr3.4:80198216-80198235 | None:intergenic | 20.0% |
| !! | TTTCTCTAAACAAAGTAAAT+TGG | - | chr3.4:80198261-80198280 | None:intergenic | 20.0% |
| !!! | AAGGGTTTTGTTTATTTTAT+TGG | + | chr3.4:80198030-80198049 | MS.gene067039:intron | 20.0% |
| !!! | ACATGTATACTTTTTTGTTA+TGG | + | chr3.4:80198518-80198537 | MS.gene067039:intron | 20.0% |
| !!! | AGGGTTTTGTTTATTTTATT+GGG | + | chr3.4:80198031-80198050 | MS.gene067039:intron | 20.0% |
| !!! | AGTGTTATTGTCAATTTTTA+GGG | - | chr3.4:80198833-80198852 | None:intergenic | 20.0% |
| !!! | CAAGAATAATACTTTTTTTG+GGG | + | chr3.4:80199207-80199226 | MS.gene067039:intron | 20.0% |
| !!! | GCTATAAGTAATACTTATTT+TGG | + | chr3.4:80200148-80200167 | MS.gene067039:intron | 20.0% |
| !!! | TAGTGTTATTGTCAATTTTT+AGG | - | chr3.4:80198834-80198853 | None:intergenic | 20.0% |
| !!! | TCAATTTTTAGGGTTAAATT+TGG | - | chr3.4:80198823-80198842 | None:intergenic | 20.0% |
| !!! | TTGCTTATACTATTTTGTTA+TGG | + | chr3.4:80199434-80199453 | MS.gene067039:intron | 20.0% |
| !!! | TTGTATTAGTTTAACACTTT+CGG | - | chr3.4:80199058-80199077 | None:intergenic | 20.0% |
| !!! | TTGTTTATACTATTTTGTTG+TGG | + | chr3.4:80199381-80199400 | MS.gene067039:intron | 20.0% |
| !!! | TTTGTGATATTGATTAACAA+GGG | + | chr3.4:80198012-80198031 | MS.gene067039:intron | 20.0% |
| !!! | TTTTGTGATATTGATTAACA+AGG | + | chr3.4:80198011-80198030 | MS.gene067039:intron | 20.0% |
| ! | AGTATTATTCTTGAATAGGT+TGG | - | chr3.4:80199200-80199219 | None:intergenic | 25.0% |
| ! | ATCTTGATAAGAGCAAATTA+AGG | + | chr3.4:80198734-80198753 | MS.gene067039:intron | 25.0% |
| ! | ATTCAAACAGTTTAATCATC+AGG | - | chr3.4:80199619-80199638 | None:intergenic | 25.0% |
| ! | CAGTCGATAAATAACAAAAT+TGG | - | chr3.4:80200111-80200130 | None:intergenic | 25.0% |
| ! | CATTTCATTTGACAAAATCA+CGG | + | chr3.4:80198347-80198366 | MS.gene067039:intron | 25.0% |
| ! | GTAGAAAAATGAGTGAAATT+GGG | - | chr3.4:80197863-80197882 | None:intergenic | 25.0% |
| ! | GTTATAAAGGGTTGTTAAAT+TGG | - | chr3.4:80198239-80198258 | None:intergenic | 25.0% |
| ! | GTTATAGAAAGAAACAAAGT+AGG | - | chr3.4:80198217-80198236 | None:intergenic | 25.0% |
| ! | TAAGTATTACTTATAGCCAA+AGG | - | chr3.4:80200145-80200164 | None:intergenic | 25.0% |
| ! | TAGAAAAATGAGTGAAATTG+GGG | - | chr3.4:80197862-80197881 | None:intergenic | 25.0% |
| ! | TAGCACAAAAAAATAATCAG+TGG | - | chr3.4:80197899-80197918 | None:intergenic | 25.0% |
| ! | TGTAGAAAAATGAGTGAAAT+TGG | - | chr3.4:80197864-80197883 | None:intergenic | 25.0% |
| ! | TGTTTGAATGTTGAAAAGAA+TGG | + | chr3.4:80199630-80199649 | MS.gene067039:intron | 25.0% |
| !! | GTTTGATTCTCTTTGTTTAA+GGG | + | chr3.4:80197947-80197966 | MS.gene067039:intron | 25.0% |
| !! | TTTTATCTCCTAGTTGAATT+TGG | + | chr3.4:80199934-80199953 | MS.gene067039:intron | 25.0% |
| !!! | GTTTTTTTGTGATATCATTG+TGG | + | chr3.4:80199587-80199606 | MS.gene067039:intron | 25.0% |
| AACAGTTTAATCATCAGGAA+CGG | - | chr3.4:80199614-80199633 | None:intergenic | 30.0% | |
| ACAAATAGCCAAATTCAACT+AGG | - | chr3.4:80199945-80199964 | None:intergenic | 30.0% | |
| ACCAAAAACACTCATTGTTT+AGG | - | chr3.4:80198708-80198727 | None:intergenic | 30.0% | |
| ACTCACTCTCAAATTCAATT+AGG | - | chr3.4:80199566-80199585 | None:intergenic | 30.0% | |
| AGAAAAATGAGTGAAATTGG+GGG | - | chr3.4:80197861-80197880 | None:intergenic | 30.0% | |
| AGCGGTTAAATTGGTTATAA+AGG | - | chr3.4:80198166-80198185 | None:intergenic | 30.0% | |
| CTCAATATTATGGTTCACAA+TGG | - | chr3.4:80199509-80199528 | None:intergenic | 30.0% | |
| TAATTGAATTTGAGAGTGAG+TGG | + | chr3.4:80199565-80199584 | MS.gene067039:intron | 30.0% | |
| TGAATTTGGCTATTTGTTTC+AGG | + | chr3.4:80199948-80199967 | MS.gene067039:intron | 30.0% | |
| TTCGGTCTCAATAACAAATT+TGG | - | chr3.4:80199040-80199059 | None:intergenic | 30.0% | |
| TTTGTGAAGGTGAAGAAATA+TGG | + | chr3.4:80198102-80198121 | MS.gene067039:CDS | 30.0% | |
| ! | ACCTAAACAATGAGTGTTTT+TGG | + | chr3.4:80198704-80198723 | MS.gene067039:intron | 30.0% |
| ! | AGCTAGCACAAATTTTATGT+AGG | + | chr3.4:80198588-80198607 | MS.gene067039:intron | 30.0% |
| ! | CTAGCACAAATTTTATGTAG+GGG | + | chr3.4:80198590-80198609 | MS.gene067039:intron | 30.0% |
| ! | GCTAGCACAAATTTTATGTA+GGG | + | chr3.4:80198589-80198608 | MS.gene067039:intron | 30.0% |
| ! | GGTTTGATTCTCTTTGTTTA+AGG | + | chr3.4:80197946-80197965 | MS.gene067039:intron | 30.0% |
| ! | GTTGACTCAATAATTTGAGT+AGG | - | chr3.4:80199304-80199323 | None:intergenic | 30.0% |
| ! | TAGATTTTGCAAAGTCAATC+TGG | + | chr3.4:80198402-80198421 | MS.gene067039:intron | 30.0% |
| !! | TTGTTATTTATCGACTGACA+TGG | + | chr3.4:80200114-80200133 | MS.gene067039:intron | 30.0% |
| AAAGAAACAAAGTAGGGTTC+GGG | - | chr3.4:80198210-80198229 | None:intergenic | 35.0% | |
| AAAGACATAATCACTCTTCG+TGG | + | chr3.4:80197783-80197802 | MS.gene067039:CDS | 35.0% | |
| AAATTGCACCTTGGTATCAA+AGG | - | chr3.4:80200081-80200100 | None:intergenic | 35.0% | |
| ACAGTTACTTATGGAGAGTT+GGG | + | chr3.4:80198303-80198322 | MS.gene067039:intron | 35.0% | |
| ACGAAGAGTGATTATGTCTT+TGG | - | chr3.4:80197784-80197803 | None:intergenic | 35.0% | |
| ATCATACAAGAACGACGAAT+GGG | + | chr3.4:80200202-80200221 | MS.gene067039:CDS | 35.0% | |
| GAAAGAAACAAAGTAGGGTT+CGG | - | chr3.4:80198211-80198230 | None:intergenic | 35.0% | |
| GATAAACACCTCGATTGTAA+AGG | - | chr3.4:80198071-80198090 | None:intergenic | 35.0% | |
| GCAAAAGTGAACATGTTTAC+AGG | - | chr3.4:80199418-80199437 | None:intergenic | 35.0% | |
| GTTTGTCAGAATCAGAATCA+CGG | - | chr3.4:80198432-80198451 | None:intergenic | 35.0% | |
| TATCATACAAGAACGACGAA+TGG | + | chr3.4:80200201-80200220 | MS.gene067039:CDS | 35.0% | |
| TCATCTTCAGTAAGCAACAT+CGG | - | chr3.4:80198132-80198151 | None:intergenic | 35.0% | |
| TTTGATACCAAGGTGCAATT+TGG | + | chr3.4:80200080-80200099 | MS.gene067039:intron | 35.0% | |
| TTTGGTTATGCAGATTCACA+AGG | + | chr3.4:80200166-80200185 | MS.gene067039:intron | 35.0% | |
| ! | ATGTTGCTTACTGAAGATGA+GGG | + | chr3.4:80198132-80198151 | MS.gene067039:CDS | 35.0% |
| ! | GAACTTTTAAGCCCATGATT+GGG | - | chr3.4:80198465-80198484 | None:intergenic | 35.0% |
| ! | TGAACTTTTAAGCCCATGAT+TGG | - | chr3.4:80198466-80198485 | None:intergenic | 35.0% |
| ! | TGGACTTGCTCATTATAACA+AGG | - | chr3.4:80199685-80199704 | None:intergenic | 35.0% |
| !!! | TTTTGTGCTATTTTCGAACC+AGG | + | chr3.4:80197909-80197928 | MS.gene067039:intron | 35.0% |
| AATTTAACCGCTCAGCTTTC+TGG | + | chr3.4:80198174-80198193 | MS.gene067039:CDS | 40.0% | |
| ACATAACCCAACTTACATGC+AGG | - | chr3.4:80199270-80199289 | None:intergenic | 40.0% | |
| ACCTTCACAAAGCTTTCTTC+TGG | - | chr3.4:80198093-80198112 | None:intergenic | 40.0% | |
| ACTCATAGTGAACCCAATCA+TGG | + | chr3.4:80198450-80198469 | MS.gene067039:intron | 40.0% | |
| ACTGCATTCCTTTGATACCA+AGG | + | chr3.4:80200070-80200089 | MS.gene067039:CDS | 40.0% | |
| AGAAAGCTGAGCGGTTAAAT+TGG | - | chr3.4:80198175-80198194 | None:intergenic | 40.0% | |
| ATAACCCAACTTACATGCAG+GGG | - | chr3.4:80199268-80199287 | None:intergenic | 40.0% | |
| ATACAAGGTTCATCCAAGCA+TGG | - | chr3.4:80199857-80199876 | None:intergenic | 40.0% | |
| ATCAAGAGTGACAGCATACA+AGG | - | chr3.4:80199872-80199891 | None:intergenic | 40.0% | |
| ATGTGGAAGTTCCATTCACT+TGG | + | chr3.4:80200003-80200022 | MS.gene067039:CDS | 40.0% | |
| CATAACCCAACTTACATGCA+GGG | - | chr3.4:80199269-80199288 | None:intergenic | 40.0% | |
| CATGGATAAGGCTTGATTGT+TGG | - | chr3.4:80198555-80198574 | None:intergenic | 40.0% | |
| CTCATAGTGAACCCAATCAT+GGG | + | chr3.4:80198451-80198470 | MS.gene067039:intron | 40.0% | |
| GAATGCAGTTTCACCATTTG+TGG | - | chr3.4:80200059-80200078 | None:intergenic | 40.0% | |
| GACAGTTACTTATGGAGAGT+TGG | + | chr3.4:80198302-80198321 | MS.gene067039:intron | 40.0% | |
| GACTGACATGGTTTATCCTT+TGG | + | chr3.4:80200126-80200145 | MS.gene067039:intron | 40.0% | |
| GCTGATTGCTAATCCACAAA+TGG | + | chr3.4:80200043-80200062 | MS.gene067039:CDS | 40.0% | |
| GGAAATCATGAGAGAGATAC+AGG | + | chr3.4:80199793-80199812 | MS.gene067039:CDS | 40.0% | |
| GGCATATACTAACACAGATG+TGG | + | chr3.4:80199986-80200005 | MS.gene067039:CDS | 40.0% | |
| GTTATAATGAGCAAGTCCAC+TGG | + | chr3.4:80199686-80199705 | MS.gene067039:CDS | 40.0% | |
| TATCACCTATTTGCCATGCT+TGG | + | chr3.4:80199841-80199860 | MS.gene067039:CDS | 40.0% | |
| TGAAAAGAATGGCTTGAAGC+TGG | + | chr3.4:80199641-80199660 | MS.gene067039:intron | 40.0% | |
| TGCTGAAATTCCACCTTTCA+AGG | - | chr3.4:80199718-80199737 | None:intergenic | 40.0% | |
| TTAGTTACCAGAAAGCTGAG+CGG | - | chr3.4:80198184-80198203 | None:intergenic | 40.0% | |
| TTCAGCATCCTTTACAATCG+AGG | + | chr3.4:80198060-80198079 | MS.gene067039:intron | 40.0% | |
| TTCAGGTGTGTTTGATGTGT+TGG | + | chr3.4:80199965-80199984 | MS.gene067039:intron | 40.0% | |
| TTCATCCAAGCATGGCAAAT+AGG | - | chr3.4:80199849-80199868 | None:intergenic | 40.0% | |
| ! | AGTGTTGGGACAGTTACTTA+TGG | + | chr3.4:80198294-80198313 | MS.gene067039:intron | 40.0% |
| ! | GAGAGTGAGTGATTTTTCTG+AGG | + | chr3.4:80199481-80199500 | MS.gene067039:intron | 40.0% |
| ! | GATGTTGCTTACTGAAGATG+AGG | + | chr3.4:80198131-80198150 | MS.gene067039:CDS | 40.0% |
| ! | TCCAGAAGAAAGCTTTGTGA+AGG | + | chr3.4:80198089-80198108 | MS.gene067039:CDS | 40.0% |
| !! | TGTGGATTAGCAATCAGCTT+TGG | - | chr3.4:80200041-80200060 | None:intergenic | 40.0% |
| !!! | TACTTTTTTTGGGGTAGCCA+TGG | + | chr3.4:80199216-80199235 | MS.gene067039:intron | 40.0% |
| AACCAGGATATGCTGCTAAC+AGG | + | chr3.4:80197925-80197944 | MS.gene067039:intron | 45.0% | |
| AACCTGTTAGCAGCATATCC+TGG | - | chr3.4:80197930-80197949 | None:intergenic | 45.0% | |
| CGAAGCAATCTGCCTCATAA+TGG | - | chr3.4:80199819-80199838 | None:intergenic | 45.0% | |
| CTTCAGTAAGCAACATCGGA+AGG | - | chr3.4:80198128-80198147 | None:intergenic | 45.0% | |
| GAGAGATACAGGCCATTATG+AGG | + | chr3.4:80199804-80199823 | MS.gene067039:CDS | 45.0% | |
| GATAACGAGGTTGTCGAGAA+GGG | + | chr3.4:80199746-80199765 | MS.gene067039:CDS | 45.0% | |
| GCAATCGTTAGCGAGTTCTT+CGG | + | chr3.4:80197813-80197832 | MS.gene067039:CDS | 45.0% | |
| GGCTACCTCATGCTAATGAA+GGG | + | chr3.4:80199237-80199256 | MS.gene067039:intron | 45.0% | |
| GGTAAGTCCAAATTGCACCT+TGG | - | chr3.4:80200090-80200109 | None:intergenic | 45.0% | |
| TCACTCTCAGTCCAAGTGAA+TGG | - | chr3.4:80200017-80200036 | None:intergenic | 45.0% | |
| TCATTAGCATGAGGTAGCCA+TGG | - | chr3.4:80199236-80199255 | None:intergenic | 45.0% | |
| TGGCTACCTCATGCTAATGA+AGG | + | chr3.4:80199236-80199255 | MS.gene067039:intron | 45.0% | |
| TTGAAGCTGGCAAGTTACAG+AGG | + | chr3.4:80199654-80199673 | MS.gene067039:CDS | 45.0% | |
| ! | AGCCTTATCCATGTAAGCAG+CGG | + | chr3.4:80198562-80198581 | MS.gene067039:intron | 45.0% |
| ! | CAGCATTGAGACTGATAACG+AGG | + | chr3.4:80199733-80199752 | MS.gene067039:CDS | 45.0% |
| ! | TGATAACGAGGTTGTCGAGA+AGG | + | chr3.4:80199745-80199764 | MS.gene067039:CDS | 45.0% |
| !!! | TATCTAAATATTTTTTATTT+GGG | + | chr3.4:80199153-80199172 | MS.gene067039:intron | 5.0% |
| !!! | TTAATTTTTTTCTTTAAATT+TGG | - | chr3.4:80198616-80198635 | None:intergenic | 5.0% |
| CCACTGGTGAAGTCCTTGAA+AGG | + | chr3.4:80199702-80199721 | MS.gene067039:CDS | 50.0% | |
| CCTTTCAAGGACTTCACCAG+TGG | - | chr3.4:80199705-80199724 | None:intergenic | 50.0% | |
| CGGTTCCCTTCATTAGCATG+AGG | - | chr3.4:80199245-80199264 | None:intergenic | 50.0% | |
| CTGGTGAAGTCCTTGAAAGG+TGG | + | chr3.4:80199705-80199724 | MS.gene067039:CDS | 50.0% | |
| GTCAAGGGAGAAGAGTGACA+AGG | + | chr3.4:80199772-80199791 | MS.gene067039:CDS | 50.0% | |
| AACCGCCCCTGCATGTAAGT+TGG | + | chr3.4:80199260-80199279 | MS.gene067039:intron | 55.0% | |
| ACCCAACTTACATGCAGGGG+CGG | - | chr3.4:80199265-80199284 | None:intergenic | 55.0% | |
| ACCGCCCCTGCATGTAAGTT+GGG | + | chr3.4:80199261-80199280 | MS.gene067039:intron | 55.0% | |
| CGCCGCTGCTTACATGGATA+AGG | - | chr3.4:80198567-80198586 | None:intergenic | 55.0% | |
| TAGCTTCGCCGCTGCTTACA+TGG | - | chr3.4:80198573-80198592 | None:intergenic | 55.0% | |
| TGTCGAGAAGGGCGAGTCAA+GGG | + | chr3.4:80199757-80199776 | MS.gene067039:CDS | 55.0% | |
| TTGTCGAGAAGGGCGAGTCA+AGG | + | chr3.4:80199756-80199775 | MS.gene067039:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 80197762 | 80200235 | 80197762 | ID=MS.gene067039 |
| chr3.4 | mRNA | 80197762 | 80200235 | 80197762 | ID=MS.gene067039.t1;Parent=MS.gene067039 |
| chr3.4 | exon | 80197762 | 80197834 | 80197762 | ID=MS.gene067039.t1.exon1;Parent=MS.gene067039.t1 |
| chr3.4 | CDS | 80197762 | 80197834 | 80197762 | ID=cds.MS.gene067039.t1;Parent=MS.gene067039.t1 |
| chr3.4 | exon | 80197931 | 80197946 | 80197931 | ID=MS.gene067039.t1.exon2;Parent=MS.gene067039.t1 |
| chr3.4 | CDS | 80197931 | 80197946 | 80197931 | ID=cds.MS.gene067039.t1;Parent=MS.gene067039.t1 |
| chr3.4 | exon | 80198065 | 80198195 | 80198065 | ID=MS.gene067039.t1.exon3;Parent=MS.gene067039.t1 |
| chr3.4 | CDS | 80198065 | 80198195 | 80198065 | ID=cds.MS.gene067039.t1;Parent=MS.gene067039.t1 |
| chr3.4 | exon | 80199648 | 80199872 | 80199648 | ID=MS.gene067039.t1.exon4;Parent=MS.gene067039.t1 |
| chr3.4 | CDS | 80199648 | 80199872 | 80199648 | ID=cds.MS.gene067039.t1;Parent=MS.gene067039.t1 |
| chr3.4 | exon | 80199970 | 80200091 | 80199970 | ID=MS.gene067039.t1.exon5;Parent=MS.gene067039.t1 |
| chr3.4 | CDS | 80199970 | 80200091 | 80199970 | ID=cds.MS.gene067039.t1;Parent=MS.gene067039.t1 |
| chr3.4 | exon | 80200179 | 80200235 | 80200179 | ID=MS.gene067039.t1.exon6;Parent=MS.gene067039.t1 |
| chr3.4 | CDS | 80200179 | 80200235 | 80200179 | ID=cds.MS.gene067039.t1;Parent=MS.gene067039.t1 |
| Gene Sequence |
| Protein sequence |
