Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023503.t1 | XP_003629664.1 | 93.3 | 764 | 51 | 0 | 1 | 764 | 1 | 764 | 0.00E+00 | 1341.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023503.t1 | Q6NTR1 | 31.7 | 736 | 419 | 17 | 18 | 743 | 10 | 671 | 1.9e-75 | 285.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023503.t1 | G7LHU6 | 93.3 | 764 | 51 | 0 | 1 | 764 | 1 | 764 | 0.0e+00 | 1341.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061807 | MS.gene023503 | PPI |
| MS.gene030837 | MS.gene023503 | PPI |
| MS.gene28048 | MS.gene023503 | PPI |
| MS.gene023503 | MS.gene57322 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023503.t1 | MTR_8g085220 | 97.513 | 764 | 19 | 0 | 1 | 764 | 1 | 764 | 0.0 | 1540 |
| MS.gene023503.t1 | MTR_8g085220 | 96.466 | 764 | 19 | 1 | 1 | 764 | 1 | 756 | 0.0 | 1516 |
| MS.gene023503.t1 | MTR_1g050528 | 25.786 | 477 | 296 | 15 | 299 | 760 | 34 | 467 | 9.40e-33 | 132 |
| MS.gene023503.t1 | MTR_2g035820 | 35.526 | 152 | 88 | 5 | 25 | 174 | 14 | 157 | 2.82e-20 | 91.3 |
| MS.gene023503.t1 | MTR_0003s0620 | 35.172 | 145 | 85 | 4 | 18 | 161 | 12 | 148 | 2.09e-18 | 83.2 |
| MS.gene023503.t1 | MTR_4g068950 | 32.222 | 180 | 99 | 7 | 25 | 192 | 26 | 194 | 4.80e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023503.t1 | AT2G31740 | 56.047 | 769 | 312 | 10 | 2 | 761 | 6 | 757 | 0.0 | 843 |
| MS.gene023503.t1 | AT2G31740 | 51.473 | 577 | 256 | 9 | 192 | 761 | 1 | 560 | 0.0 | 568 |
| MS.gene023503.t1 | AT5G04610 | 25.149 | 505 | 277 | 19 | 277 | 760 | 10 | 434 | 7.57e-27 | 114 |
| MS.gene023503.t1 | AT3G60910 | 32.967 | 182 | 113 | 3 | 25 | 205 | 19 | 192 | 8.51e-22 | 95.9 |
| MS.gene023503.t1 | AT3G17365 | 34.395 | 157 | 95 | 4 | 19 | 174 | 10 | 159 | 3.87e-20 | 90.9 |
| MS.gene023503.t1 | AT4G34360 | 31.319 | 182 | 108 | 6 | 25 | 197 | 21 | 194 | 1.72e-15 | 77.4 |
| MS.gene023503.t1 | AT3G60910 | 32.061 | 131 | 87 | 2 | 76 | 205 | 1 | 130 | 2.09e-14 | 72.8 |
| MS.gene023503.t1 | AT3G17365 | 34.400 | 125 | 74 | 4 | 19 | 142 | 10 | 127 | 3.80e-14 | 73.9 |
Find 172 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTAGCCTTCAAACATTTA+TGG | 0.171031 | 4.3:+15430747 | MS.gene023503:CDS |
| ACCCCACAATGATATGTAAA+TGG | 0.199778 | 4.3:-15432517 | None:intergenic |
| GATTTCTCTAAAGTCGTTAT+TGG | 0.214024 | 4.3:+15429863 | MS.gene023503:CDS |
| CAAGAGAACCTTGTCCTTGA+TGG | 0.217673 | 4.3:-15436874 | None:intergenic |
| TGAACATTTACCTACAAAAT+TGG | 0.232011 | 4.3:+15434443 | MS.gene023503:CDS |
| CGTTGAGGATAAACGCTTAA+AGG | 0.233491 | 4.3:+15435877 | MS.gene023503:CDS |
| TATCACACAGGGATTATTTC+AGG | 0.234354 | 4.3:+15435257 | MS.gene023503:CDS |
| TCACAGGTGTATCCCTGTTT+TGG | 0.245428 | 4.3:+15435679 | MS.gene023503:CDS |
| AGGTGGATTGGATGCTTTAA+TGG | 0.254550 | 4.3:+15429994 | MS.gene023503:CDS |
| CAGATCACTTCTTCATTAAC+TGG | 0.257426 | 4.3:+15434279 | MS.gene023503:intron |
| ATTCGAAAGAGCTGCAAATT+TGG | 0.261190 | 4.3:+15434395 | MS.gene023503:CDS |
| CTTGCAATATCAACAATTAC+AGG | 0.285567 | 4.3:-15435839 | None:intergenic |
| ACGCCGGAGCTGGAGGAGTT+AGG | 0.311299 | 4.3:-15429754 | None:intergenic |
| AGGTCTCTTTGTTGTCAATT+TGG | 0.311307 | 4.3:+15436836 | MS.gene023503:CDS |
| CGGCGGGTGCAGCTGACTTT+AGG | 0.311417 | 4.3:+15432430 | MS.gene023503:CDS |
| TGTGGCATCAAGTGGGAAAA+TGG | 0.317139 | 4.3:+15435310 | MS.gene023503:CDS |
| TTTGGTGCTGTTGTTGATAA+AGG | 0.321477 | 4.3:+15429974 | MS.gene023503:CDS |
| GCTTATGCGGTGGCGTGTTA+TGG | 0.330145 | 4.3:+15429919 | MS.gene023503:CDS |
| GGTTCTCTTGAGAATGAAAA+AGG | 0.331963 | 4.3:+15436887 | MS.gene023503:CDS |
| ATATATGCACAGTTTCTTGA+TGG | 0.343257 | 4.3:+15433389 | MS.gene023503:intron |
| AAAATCGGAGTCATCTATTC+AGG | 0.346108 | 4.3:+15437340 | MS.gene023503:CDS |
| TGCCAGCATGGATGAGATTC+AGG | 0.351967 | 4.3:+15433029 | MS.gene023503:CDS |
| ATTACCTCAATCTCCAAAAC+AGG | 0.355908 | 4.3:-15435692 | None:intergenic |
| ACTTCACCAGCAAAGAAAAC+TGG | 0.361309 | 4.3:+15429642 | MS.gene023503:CDS |
| TGCTTCACTTCATTGTAATT+CGG | 0.363852 | 4.3:+15430828 | MS.gene023503:CDS |
| GTCCCTCAGGTGGGGCCATT+CGG | 0.368412 | 4.3:-15429708 | None:intergenic |
| CTTTGCTGGTGAAGTCTCCT+AGG | 0.376502 | 4.3:-15429634 | None:intergenic |
| CATTATGAGACGAGCTGCTT+TGG | 0.376812 | 4.3:-15432890 | None:intergenic |
| CCTAAGCTTGGTCCTACTTT+GGG | 0.380813 | 4.3:+15430019 | MS.gene023503:CDS |
| GTTCGAGAGAGTGCTAGTTT+TGG | 0.385076 | 4.3:+15436447 | MS.gene023503:CDS |
| GAGGAGTTAGGGTTTGGAGA+AGG | 0.386256 | 4.3:-15429742 | None:intergenic |
| GCCTAAGCTTGGTCCTACTT+TGG | 0.389497 | 4.3:+15430018 | MS.gene023503:CDS |
| CGCCGGAGCTGGAGGAGTTA+GGG | 0.390013 | 4.3:-15429753 | None:intergenic |
| TATTATTGATGTTGACTCTT+CGG | 0.390066 | 4.3:+15436584 | MS.gene023503:CDS |
| AGGAGTTAGGGTTTGGAGAA+GGG | 0.390979 | 4.3:-15429741 | None:intergenic |
| AAGACGGGAGTTGCCGCAAC+CGG | 0.397658 | 4.3:-15429795 | None:intergenic |
| GCCATACCTATGAAGTCTTC+TGG | 0.397905 | 4.3:+15430721 | MS.gene023503:CDS |
| GAGCTGGAGGAGTTAGGGTT+TGG | 0.401610 | 4.3:-15429748 | None:intergenic |
| CGAAATATCAACTCTCTAGA+AGG | 0.402288 | 4.3:-15434363 | None:intergenic |
| ATAATCTTCTGACCAATCTC+AGG | 0.408366 | 4.3:-15437419 | None:intergenic |
| CATTTACATCCTCATCAAAC+TGG | 0.411952 | 4.3:-15437301 | None:intergenic |
| ATGTTGACTCTTCGGATTCA+AGG | 0.414037 | 4.3:+15436592 | MS.gene023503:CDS |
| AACCTTGTCCTTGATGGCTT+GGG | 0.415518 | 4.3:-15436868 | None:intergenic |
| GAACCTTGTCCTTGATGGCT+TGG | 0.418072 | 4.3:-15436869 | None:intergenic |
| CAGCTGCACCCGCCGACCTT+GGG | 0.421403 | 4.3:-15432422 | None:intergenic |
| CCGCAACCGGGGACGAGGAC+GGG | 0.423407 | 4.3:-15429782 | None:intergenic |
| TACTTCCTATGTTTCTTCAC+AGG | 0.423497 | 4.3:+15435663 | MS.gene023503:CDS |
| AGATGAGTGGGTCCCTCAGG+TGG | 0.427328 | 4.3:-15429718 | None:intergenic |
| CATTTACCTACAAAATTGGT+TGG | 0.430361 | 4.3:+15434447 | MS.gene023503:CDS |
| TCAAACATTTATGGTGGTTG+TGG | 0.434195 | 4.3:+15430756 | MS.gene023503:CDS |
| GGTTTACCAGAAGACTTCAT+AGG | 0.434697 | 4.3:-15430727 | None:intergenic |
| TCAGCTGCACCCGCCGACCT+TGG | 0.437954 | 4.3:-15432423 | None:intergenic |
| ACCATAAATGTTTGAAGGCT+AGG | 0.438429 | 4.3:-15430748 | None:intergenic |
| CAAAGCAGCTCGTCTCATAA+TGG | 0.438813 | 4.3:+15432891 | MS.gene023503:CDS |
| ACTTCATTGTAATTCGGAAC+AGG | 0.439373 | 4.3:+15430834 | MS.gene023503:CDS |
| TAGCACTCTCTCGAACAAAC+TGG | 0.441549 | 4.3:-15436440 | None:intergenic |
| TTGCAGCTCTTTCGAATACA+AGG | 0.446510 | 4.3:-15434389 | None:intergenic |
| CCCGTCCTCGTCCCCGGTTG+CGG | 0.447332 | 4.3:+15429782 | MS.gene023503:CDS |
| ACGGGAAGAGACGCCGGAGC+TGG | 0.449385 | 4.3:-15429764 | None:intergenic |
| AAGTTCAATCACCCTGAGAT+TGG | 0.450846 | 4.3:+15437407 | MS.gene023503:CDS |
| ACCCATTTACATATCATTGT+GGG | 0.451460 | 4.3:+15432515 | MS.gene023503:CDS |
| GATGAGTGGGTCCCTCAGGT+GGG | 0.454889 | 4.3:-15429717 | None:intergenic |
| CAGCTGACTTTAGGTGGCCA+AGG | 0.455699 | 4.3:+15432439 | MS.gene023503:CDS |
| CGTAGAGGTGTTCGGAAAGA+CGG | 0.458635 | 4.3:-15429811 | None:intergenic |
| GCGTACCATTCGAAAGAATC+GGG | 0.459537 | 4.3:-15429686 | None:intergenic |
| ATTTATGGTGGTTGTGGAGA+AGG | 0.462501 | 4.3:+15430762 | MS.gene023503:CDS |
| GGCGTACCATTCGAAAGAAT+CGG | 0.462581 | 4.3:-15429687 | None:intergenic |
| CAACCACCATAAATGTTTGA+AGG | 0.463677 | 4.3:-15430753 | None:intergenic |
| GAAAATATTGATAGTGAAGT+CGG | 0.465452 | 4.3:+15434330 | MS.gene023503:CDS |
| TGGACTGGCATGCCCTGCCC+CGG | 0.466296 | 4.3:+15436761 | MS.gene023503:CDS |
| GGGAGATGAGTGGGTCCCTC+AGG | 0.477143 | 4.3:-15429721 | None:intergenic |
| CTTTCGAATGGTACGCCGAA+TGG | 0.485848 | 4.3:+15429693 | MS.gene023503:CDS |
| GCCGGCATCGTAGAGGTGTT+CGG | 0.486808 | 4.3:-15429819 | None:intergenic |
| TCTCTTCCCGTCCTCGTCCC+CGG | 0.487254 | 4.3:+15429776 | MS.gene023503:CDS |
| AACCCTAACTCCTCCAGCTC+CGG | 0.491120 | 4.3:+15429751 | MS.gene023503:CDS |
| GTAGAGGTGTTCGGAAAGAC+GGG | 0.492444 | 4.3:-15429810 | None:intergenic |
| ACCAGAAGACTTCATAGGTA+TGG | 0.493264 | 4.3:-15430722 | None:intergenic |
| CCCCACAATGATATGTAAAT+GGG | 0.494799 | 4.3:-15432516 | None:intergenic |
| GCTTTAATGGAGCCTAAGCT+TGG | 0.497175 | 4.3:+15430007 | MS.gene023503:CDS |
| ACGAGGACGGGAAGAGACGC+CGG | 0.497666 | 4.3:-15429770 | None:intergenic |
| GGTGCTGTTGTTGATAAAGG+TGG | 0.498311 | 4.3:+15429977 | MS.gene023503:CDS |
| TTTGCTGGTGAAGTCTCCTA+GGG | 0.500611 | 4.3:-15429633 | None:intergenic |
| TTGGCTGAATCTCATGTACT+AGG | 0.504621 | 4.3:+15430342 | MS.gene023503:CDS |
| AAAGTTTGTATGTCTTACCT+TGG | 0.508410 | 4.3:+15430323 | MS.gene023503:CDS |
| AAGAGAAAACAGAGCACCCT+TGG | 0.508461 | 4.3:-15432456 | None:intergenic |
| ATGAGTGGGTCCCTCAGGTG+GGG | 0.509859 | 4.3:-15429716 | None:intergenic |
| CTCTGATCGATTATACTCCA+TGG | 0.509917 | 4.3:+15432369 | MS.gene023503:CDS |
| CACATTAATATCCTCATACA+TGG | 0.511445 | 4.3:+15435283 | MS.gene023503:CDS |
| AATTGGTTGGTGAGACAGAA+AGG | 0.513082 | 4.3:+15434460 | MS.gene023503:CDS |
| CTTAGATTTAGACGATGAGT+TGG | 0.514732 | 4.3:-15434490 | None:intergenic |
| GAACCTAAAGAAAACGAGAA+TGG | 0.516666 | 4.3:+15433157 | MS.gene023503:CDS |
| AGATATTGATTTCCCAAAGT+AGG | 0.518774 | 4.3:-15430031 | None:intergenic |
| GACCCATTTACATATCATTG+TGG | 0.519276 | 4.3:+15432514 | MS.gene023503:CDS |
| GTCGCGGTCCCAAGCCATCA+AGG | 0.520546 | 4.3:+15436860 | MS.gene023503:CDS |
| AGTTTCTTGATGGCAAGTGA+TGG | 0.521205 | 4.3:+15433399 | MS.gene023503:intron |
| GTCTCCGCTAGTTAAACAGT+TGG | 0.522893 | 4.3:+15433135 | MS.gene023503:CDS |
| GTTTCTTGATGGCAAGTGAT+GGG | 0.527266 | 4.3:+15433400 | MS.gene023503:intron |
| TCCGAACACCTCTACGATGC+CGG | 0.527867 | 4.3:+15429818 | MS.gene023503:CDS |
| AGCCATGATAGACAGTCAAC+TGG | 0.529283 | 4.3:-15435220 | None:intergenic |
| AGAGAAATCAATGTTGGTGA+TGG | 0.529577 | 4.3:-15429849 | None:intergenic |
| CATCCATGCTGGCATTCGTA+TGG | 0.531334 | 4.3:-15433020 | None:intergenic |
| TCTCAAAGTTTCGACTTGGG+TGG | 0.531746 | 4.3:+15430683 | MS.gene023503:CDS |
| CAGGTAAAAGCTGTAGTCAT+AGG | 0.532263 | 4.3:+15435626 | MS.gene023503:intron |
| AGACGGGAGTTGCCGCAACC+GGG | 0.532482 | 4.3:-15429794 | None:intergenic |
| AGTTGCCGCAACCGGGGACG+AGG | 0.537945 | 4.3:-15429787 | None:intergenic |
| GAAGAGCAAAACTGAGAAGA+AGG | 0.539162 | 4.3:+15429598 | MS.gene023503:CDS |
| ATCCAGGTGCATATAGCTGA+TGG | 0.544237 | 4.3:+15436414 | MS.gene023503:intron |
| ACGCCGAATGGCCCCACCTG+AGG | 0.545364 | 4.3:+15429705 | MS.gene023503:CDS |
| AACCAGTTGACTGTCTATCA+TGG | 0.547529 | 4.3:+15435218 | MS.gene023503:CDS |
| CATGCTGGCATTCGTATGGC+TGG | 0.548233 | 4.3:-15433016 | None:intergenic |
| CCCAGATTCGTGCTCGCGAA+TGG | 0.549914 | 4.3:+15432824 | MS.gene023503:intron |
| CTTCACCAGCAAAGAAAACT+GGG | 0.550002 | 4.3:+15429643 | MS.gene023503:CDS |
| CTGTAATTGTTGATATTGCA+AGG | 0.553328 | 4.3:+15435840 | MS.gene023503:CDS |
| CGGGTGCAGCTGACTTTAGG+TGG | 0.553923 | 4.3:+15432433 | MS.gene023503:CDS |
| TTCTGAAGAAGGACAATGGA+TGG | 0.554320 | 4.3:+15432855 | MS.gene023503:CDS |
| CGCCGAATGGCCCCACCTGA+GGG | 0.556465 | 4.3:+15429706 | MS.gene023503:CDS |
| ACGCCACCGCATAAGCGGAC+GGG | 0.558310 | 4.3:-15429912 | None:intergenic |
| GACTTTAGAGAAATCAATGT+TGG | 0.558646 | 4.3:-15429855 | None:intergenic |
| GTTGGTGATGGAAGTGAAGC+CGG | 0.560390 | 4.3:-15429837 | None:intergenic |
| TTCGCCCCGATTCTTTCGAA+TGG | 0.562983 | 4.3:+15429681 | MS.gene023503:CDS |
| TGTTGTTGATAAAGGTGGAT+TGG | 0.566358 | 4.3:+15429982 | MS.gene023503:CDS |
| TACCTGAATCTCATCCATGC+TGG | 0.566429 | 4.3:-15433031 | None:intergenic |
| AAAGCTGTAGTCATAGGTCT+CGG | 0.567384 | 4.3:+15435632 | MS.gene023503:CDS |
| CCCATTTACATATCATTGTG+GGG | 0.567798 | 4.3:+15432516 | MS.gene023503:CDS |
| GTAGTCATAGGTCTCGGAGC+AGG | 0.569863 | 4.3:+15435638 | MS.gene023503:CDS |
| CACGCCACCGCATAAGCGGA+CGG | 0.570948 | 4.3:-15429913 | None:intergenic |
| TTTGGAGAAGGGAGATGAGT+GGG | 0.571445 | 4.3:-15429730 | None:intergenic |
| CCCAAAGTAGGACCAAGCTT+AGG | 0.571551 | 4.3:-15430019 | None:intergenic |
| ATCCTCATACATGGAAAATG+TGG | 0.571566 | 4.3:+15435292 | MS.gene023503:CDS |
| AGCTGACTTTAGGTGGCCAA+GGG | 0.574680 | 4.3:+15432440 | MS.gene023503:CDS |
| TTCGTTCCCGTCCGCTTATG+CGG | 0.575011 | 4.3:+15429906 | MS.gene023503:CDS |
| AAAGCGAAACATTGTTGACC+AGG | 0.575798 | 4.3:+15433428 | MS.gene023503:CDS |
| ATGGAAAATGTGGCATCAAG+TGG | 0.578092 | 4.3:+15435302 | MS.gene023503:CDS |
| GGAAGAGACGCCGGAGCTGG+AGG | 0.578838 | 4.3:-15429761 | None:intergenic |
| GCCGCAACCGGGGACGAGGA+CGG | 0.581753 | 4.3:-15429783 | None:intergenic |
| CTCCATGGAAAATCTGCAAG+TGG | 0.582333 | 4.3:+15432384 | MS.gene023503:CDS |
| GTGTCTCAGAGACGGAATGA+TGG | 0.582408 | 4.3:+15434519 | MS.gene023503:CDS |
| AAACTCATCTTCAAACTGCA+TGG | 0.590190 | 4.3:-15429951 | None:intergenic |
| ATACACCTGTGAAGAAACAT+AGG | 0.591411 | 4.3:-15435668 | None:intergenic |
| AAGGACCTTCTAGATACCCT+AGG | 0.592038 | 4.3:+15429617 | MS.gene023503:CDS |
| AGAAAAGTGTGTCTCAGAGA+CGG | 0.593803 | 4.3:+15434511 | MS.gene023503:CDS |
| GCGGACGGGAACGAATATTA+CGG | 0.594202 | 4.3:-15429898 | None:intergenic |
| AAGGACAAACTTTCAGAGCA+AGG | 0.594338 | 4.3:+15436816 | MS.gene023503:CDS |
| GTTCCCGTCCGCTTATGCGG+TGG | 0.595244 | 4.3:+15429909 | MS.gene023503:CDS |
| GTTTGGAGAAGGGAGATGAG+TGG | 0.596757 | 4.3:-15429731 | None:intergenic |
| GGTTCCAACTGTTTAACTAG+CGG | 0.599597 | 4.3:-15433139 | None:intergenic |
| TGGAAAATGTGGCATCAAGT+GGG | 0.600600 | 4.3:+15435303 | MS.gene023503:CDS |
| TAGCCTTCAAACATTTATGG+TGG | 0.605298 | 4.3:+15430750 | MS.gene023503:CDS |
| GTCCCAAGCCATCAAGGACA+AGG | 0.607065 | 4.3:+15436866 | MS.gene023503:CDS |
| ATAACACGCCACCGCATAAG+CGG | 0.607072 | 4.3:-15429917 | None:intergenic |
| GAAGCACTTCAGTTTCGTTG+AGG | 0.611008 | 4.3:+15435862 | MS.gene023503:CDS |
| TAGCTAGTTCTTATCACACA+GGG | 0.613001 | 4.3:+15435246 | MS.gene023503:CDS |
| GACGGGAGTTGCCGCAACCG+GGG | 0.613197 | 4.3:-15429793 | None:intergenic |
| CAGCCATACGAATGCCAGCA+TGG | 0.615295 | 4.3:+15433017 | MS.gene023503:CDS |
| AGTCTCCTAGGGTATCTAGA+AGG | 0.617427 | 4.3:-15429622 | None:intergenic |
| TAATCTTCTGACCAATCTCA+GGG | 0.623591 | 4.3:-15437418 | None:intergenic |
| ACTACTATTTGAAGTAGACT+CGG | 0.626536 | 4.3:-15436511 | None:intergenic |
| AAATGGGTCAGACTGTTCCT+CGG | 0.626742 | 4.3:-15432500 | None:intergenic |
| TTGTTGTCAATTTGGTGTCG+CGG | 0.628868 | 4.3:+15436844 | MS.gene023503:CDS |
| GTAGCTAGTTCTTATCACAC+AGG | 0.634365 | 4.3:+15435245 | MS.gene023503:CDS |
| TTACATCCTCATCAAACTGG+AGG | 0.641651 | 4.3:-15437298 | None:intergenic |
| GGGAAATCAATATCTCTCTG+AGG | 0.642182 | 4.3:+15430039 | MS.gene023503:CDS |
| TTACCTCAATCTCCAAAACA+GGG | 0.651356 | 4.3:-15435691 | None:intergenic |
| TTGCAATATCAACAATTACA+GGG | 0.657480 | 4.3:-15435838 | None:intergenic |
| AAGTGAAGCCGGCATCGTAG+AGG | 0.660626 | 4.3:-15429826 | None:intergenic |
| CAAACTGGAGGCAAAACATG+TGG | 0.667732 | 4.3:-15437286 | None:intergenic |
| CTAGGCTTCTGGACTCCGCG+AGG | 0.671014 | 4.3:+15432303 | MS.gene023503:intron |
| TGAAGAAGGACAATGGATGG+TGG | 0.679784 | 4.3:+15432858 | MS.gene023503:CDS |
| CTCATCTTCAAACTGCATGG+CGG | 0.689594 | 4.3:-15429948 | None:intergenic |
| TAGTACATGAGATTCAGCCA+AGG | 0.702935 | 4.3:-15430340 | None:intergenic |
| CGTACCATTCGAAAGAATCG+GGG | 0.722331 | 4.3:-15429685 | None:intergenic |
| GACGGGAACGAATATTACGG+CGG | 0.730324 | 4.3:-15429895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 15429590 | 15437475 | 15429590 | ID=MS.gene023503 |
| chr4.3 | mRNA | 15429590 | 15437475 | 15429590 | ID=MS.gene023503.t1;Parent=MS.gene023503 |
| chr4.3 | exon | 15429590 | 15430060 | 15429590 | ID=MS.gene023503.t1.exon1;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15429590 | 15430060 | 15429590 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15430297 | 15430363 | 15430297 | ID=MS.gene023503.t1.exon2;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15430297 | 15430363 | 15430297 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15430674 | 15430855 | 15430674 | ID=MS.gene023503.t1.exon3;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15430674 | 15430855 | 15430674 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15432307 | 15432555 | 15432307 | ID=MS.gene023503.t1.exon4;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15432307 | 15432555 | 15432307 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15432829 | 15432912 | 15432829 | ID=MS.gene023503.t1.exon5;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15432829 | 15432912 | 15432829 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15433003 | 15433050 | 15433003 | ID=MS.gene023503.t1.exon6;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15433003 | 15433050 | 15433003 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15433127 | 15433191 | 15433127 | ID=MS.gene023503.t1.exon7;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15433127 | 15433191 | 15433127 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15433401 | 15433449 | 15433401 | ID=MS.gene023503.t1.exon8;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15433401 | 15433449 | 15433401 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15434282 | 15434540 | 15434282 | ID=MS.gene023503.t1.exon9;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15434282 | 15434540 | 15434282 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15435210 | 15435331 | 15435210 | ID=MS.gene023503.t1.exon10;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15435210 | 15435331 | 15435210 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15435629 | 15435709 | 15435629 | ID=MS.gene023503.t1.exon11;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15435629 | 15435709 | 15435629 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15435824 | 15435898 | 15435824 | ID=MS.gene023503.t1.exon12;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15435824 | 15435898 | 15435824 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15436420 | 15436613 | 15436420 | ID=MS.gene023503.t1.exon13;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15436420 | 15436613 | 15436420 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15436758 | 15436908 | 15436758 | ID=MS.gene023503.t1.exon14;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15436758 | 15436908 | 15436758 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| chr4.3 | exon | 15437278 | 15437475 | 15437278 | ID=MS.gene023503.t1.exon15;Parent=MS.gene023503.t1 |
| chr4.3 | CDS | 15437278 | 15437475 | 15437278 | ID=cds.MS.gene023503.t1;Parent=MS.gene023503.t1 |
| Gene Sequence |
| Protein sequence |
