Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023520.t1 | XP_003629697.1 | 95.4 | 194 | 7 | 1 | 1 | 192 | 1 | 194 | 1.10E-97 | 365.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023520.t1 | O64864 | 34.2 | 193 | 109 | 2 | 15 | 192 | 15 | 204 | 1.6e-28 | 127.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023520.t1 | G7LHX9 | 95.4 | 194 | 7 | 1 | 1 | 192 | 1 | 194 | 8.1e-98 | 365.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59892 | MS.gene023520 | PPI |
| MS.gene023520 | MS.gene016280 | PPI |
| MS.gene023520 | MS.gene067247 | PPI |
| MS.gene023520 | MS.gene066915 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023520.t1 | MTR_8g085560 | 95.361 | 194 | 7 | 1 | 1 | 192 | 1 | 194 | 1.44e-131 | 367 |
| MS.gene023520.t1 | MTR_3g083760 | 47.059 | 187 | 80 | 2 | 23 | 192 | 18 | 202 | 1.27e-52 | 167 |
| MS.gene023520.t1 | MTR_3g083760 | 54.098 | 122 | 56 | 0 | 23 | 144 | 18 | 139 | 8.64e-47 | 150 |
| MS.gene023520.t1 | MTR_8g446830 | 38.728 | 173 | 104 | 2 | 15 | 185 | 13 | 185 | 5.61e-39 | 132 |
| MS.gene023520.t1 | MTR_7g014880 | 37.234 | 188 | 99 | 4 | 15 | 189 | 10 | 191 | 2.71e-38 | 130 |
| MS.gene023520.t1 | MTR_1g103450 | 37.736 | 106 | 58 | 3 | 9 | 113 | 6 | 104 | 4.57e-12 | 61.6 |
| MS.gene023520.t1 | MTR_1g103470 | 41.096 | 73 | 40 | 1 | 33 | 105 | 25 | 94 | 8.59e-12 | 60.8 |
| MS.gene023520.t1 | MTR_5g006950 | 27.778 | 144 | 94 | 4 | 15 | 154 | 12 | 149 | 4.09e-11 | 59.3 |
| MS.gene023520.t1 | MTR_5g006940 | 34.862 | 109 | 64 | 4 | 10 | 113 | 6 | 112 | 6.10e-11 | 59.7 |
| MS.gene023520.t1 | MTR_1g103490 | 39.024 | 82 | 48 | 2 | 33 | 113 | 25 | 105 | 8.01e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023520.t1 | AT2G44300 | 36.275 | 204 | 110 | 3 | 6 | 192 | 3 | 203 | 4.46e-42 | 140 |
| MS.gene023520.t1 | AT2G44290 | 35.567 | 194 | 107 | 2 | 14 | 192 | 14 | 204 | 1.15e-41 | 139 |
| MS.gene023520.t1 | AT1G55260 | 41.622 | 185 | 96 | 5 | 10 | 190 | 50 | 226 | 1.35e-41 | 140 |
| MS.gene023520.t1 | AT1G55260 | 41.209 | 182 | 98 | 4 | 10 | 190 | 50 | 223 | 1.74e-41 | 139 |
| MS.gene023520.t1 | AT3G58550 | 39.333 | 150 | 88 | 2 | 8 | 154 | 10 | 159 | 2.84e-33 | 117 |
| MS.gene023520.t1 | AT3G22600 | 32.967 | 91 | 60 | 1 | 15 | 105 | 7 | 96 | 6.17e-14 | 67.0 |
| MS.gene023520.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene023520.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene023520.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene023520.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene023520.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene023520.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene023520.t1 | AT1G73890 | 36.471 | 85 | 54 | 0 | 29 | 113 | 23 | 107 | 4.03e-13 | 65.1 |
| MS.gene023520.t1 | AT4G14815 | 35.106 | 94 | 57 | 2 | 15 | 108 | 8 | 97 | 9.44e-12 | 60.8 |
| MS.gene023520.t1 | AT1G03103 | 32.967 | 91 | 57 | 1 | 15 | 105 | 8 | 94 | 3.82e-11 | 59.3 |
| MS.gene023520.t1 | AT1G05450 | 29.448 | 163 | 103 | 4 | 13 | 169 | 10 | 166 | 6.53e-11 | 59.3 |
Find 50 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTAGCCTCATGTGATTT+AGG | 0.238066 | 4.3:+15239353 | None:intergenic |
| ACAATCTATGGTTGGAGATT+TGG | 0.249161 | 4.3:+15239645 | None:intergenic |
| TACAATCCTTTGGTAACTTA+AGG | 0.268613 | 4.3:+15239515 | None:intergenic |
| GACACCAGTGCAACAATCTA+TGG | 0.281431 | 4.3:+15239633 | None:intergenic |
| ACCAATACATTGAGTTATAT+TGG | 0.304514 | 4.3:+15239483 | None:intergenic |
| TTTATAGTTAAACCAAGGTT+TGG | 0.345145 | 4.3:+15239550 | None:intergenic |
| GGTCATCATGATCTTTGATA+AGG | 0.380512 | 4.3:+15239572 | None:intergenic |
| ACAATCCTTTGGTAACTTAA+GGG | 0.380953 | 4.3:+15239516 | None:intergenic |
| GACAAGAACGGTGGCGGTTG+TGG | 0.396527 | 4.3:-15237668 | MS.gene023520:CDS |
| CGGTGCATTCTGCTTTGTCT+TGG | 0.411232 | 4.3:+15239716 | None:intergenic |
| GACAAACTCCTTACTTTGGC+TGG | 0.412680 | 4.3:-15239694 | MS.gene023520:CDS |
| GTAGGTGAGTTACAATCCTT+TGG | 0.416024 | 4.3:+15239505 | None:intergenic |
| TTATAGTTAAACCAAGGTTT+GGG | 0.422627 | 4.3:+15239551 | None:intergenic |
| CTCTTGGTAGAGGTGCTTTG+TGG | 0.443821 | 4.3:-15237635 | MS.gene023520:CDS |
| ACCAATATAACTCAATGTAT+TGG | 0.457228 | 4.3:-15239484 | MS.gene023520:intron |
| CACCGACAAACTCCTTACTT+TGG | 0.466376 | 4.3:-15239698 | MS.gene023520:CDS |
| GAAGACAACCAGCCAAAGTA+AGG | 0.470397 | 4.3:+15239686 | None:intergenic |
| ACATGAGGCTAAGGTATTTG+AGG | 0.480429 | 4.3:-15239345 | MS.gene023520:CDS |
| ACCTAAATCACATGAGGCTA+AGG | 0.495814 | 4.3:-15239354 | MS.gene023520:CDS |
| TTTGTCTTGGTTAATATCTG+AGG | 0.495906 | 4.3:+15239729 | None:intergenic |
| AAGTAGGAAACTAAAACAAA+TGG | 0.516446 | 4.3:+15237605 | None:intergenic |
| AAAGAGGTGGCTCTTGGTAG+AGG | 0.525495 | 4.3:-15237645 | MS.gene023520:CDS |
| ACTTCCACCGCAGTTCCTCC+AGG | 0.529242 | 4.3:-15239296 | MS.gene023520:intron |
| CATAAGGACTAGGAAAATCA+AGG | 0.531221 | 4.3:+15239765 | None:intergenic |
| GATCATGATGACCCAAACCT+TGG | 0.532203 | 4.3:-15239562 | MS.gene023520:CDS |
| TTGGCTTGATTAGTCACAAA+GGG | 0.535509 | 4.3:+15239664 | None:intergenic |
| TTGTGGAAAGAGGTGGCTCT+TGG | 0.535765 | 4.3:-15237651 | MS.gene023520:CDS |
| AATTCAAACTACGAAGAAGT+AGG | 0.544914 | 4.3:+15237589 | None:intergenic |
| CTTTGGTAACTTAAGGGCAA+GGG | 0.546332 | 4.3:+15239522 | None:intergenic |
| CCTTTGGTAACTTAAGGGCA+AGG | 0.546657 | 4.3:+15239521 | None:intergenic |
| AGGTTACAAGACCAAACATA+AGG | 0.547469 | 4.3:+15239749 | None:intergenic |
| CCAACCATAGATTGTTGCAC+TGG | 0.548725 | 4.3:-15239637 | MS.gene023520:CDS |
| TGTGCTTGTTTCATTTCCAG+TGG | 0.551525 | 4.3:+15237700 | None:intergenic |
| ATTGCAGCTAGTGGTACCAC+TGG | 0.560811 | 4.3:-15237716 | MS.gene023520:intron |
| CCTTGCCCTTAAGTTACCAA+AGG | 0.561963 | 4.3:-15239521 | MS.gene023520:CDS |
| ACGGTGGCGGTTGTGGAAAG+AGG | 0.565669 | 4.3:-15237661 | MS.gene023520:CDS |
| CAAGACCAAACATAAGGACT+AGG | 0.566810 | 4.3:+15239755 | None:intergenic |
| AGCCAAAGTAAGGAGTTTGT+CGG | 0.567852 | 4.3:+15239696 | None:intergenic |
| ATACATTGAGTTATATTGGT+AGG | 0.586657 | 4.3:+15239487 | None:intergenic |
| GCTCAAGACAAGAACGGTGG+CGG | 0.587172 | 4.3:-15237674 | MS.gene023520:CDS |
| CCAGTGCAACAATCTATGGT+TGG | 0.604106 | 4.3:+15239637 | None:intergenic |
| GTGGCGGTTGTGGAAAGAGG+TGG | 0.614207 | 4.3:-15237658 | MS.gene023520:CDS |
| TAACATTTATAGTTAAACCA+AGG | 0.621795 | 4.3:+15239545 | None:intergenic |
| TTTGGCTTGATTAGTCACAA+AGG | 0.627914 | 4.3:+15239663 | None:intergenic |
| TTTGAAACCTAAATCACATG+AGG | 0.643872 | 4.3:-15239360 | MS.gene023520:CDS |
| TTTACCTGGAGGAACTGCGG+TGG | 0.660595 | 4.3:+15239292 | None:intergenic |
| AAATTTACCTGGAGGAACTG+CGG | 0.666666 | 4.3:+15239289 | None:intergenic |
| ACAATTGCTCAAGACAAGAA+CGG | 0.667135 | 4.3:-15237680 | MS.gene023520:CDS |
| TTGTTGCACTGGTGTCAAAG+AGG | 0.679195 | 4.3:-15239626 | MS.gene023520:CDS |
| ATTGCTCAAGACAAGAACGG+TGG | 0.760005 | 4.3:-15237677 | MS.gene023520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr4.3:15238649-15238668 | None:intergenic | 10.0% |
| !! | AATTAAATATCAAATTTAAC+AGG | + | chr4.3:15239052-15239071 | None:intergenic | 10.0% |
| !! | ATATATACATTATTATGTAA+TGG | + | chr4.3:15238386-15238405 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr4.3:15238650-15238669 | None:intergenic | 10.0% |
| !!! | ATTTTGTATAATTTCATATT+AGG | - | chr4.3:15238996-15239015 | MS.gene023520:intron | 10.0% |
| !! | AATAGTAAATAAAATTTACC+TGG | + | chr4.3:15238122-15238141 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr4.3:15238648-15238667 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr4.3:15238584-15238603 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr4.3:15238585-15238604 | None:intergenic | 15.0% |
| !! | TTCTATTTGTTTGTTTATAT+GGG | + | chr4.3:15239326-15239345 | None:intergenic | 15.0% |
| !! | TTTCTATTTGTTTGTTTATA+TGG | + | chr4.3:15239327-15239346 | None:intergenic | 15.0% |
| !!! | AAATCATTTAAAGTGTATTT+AGG | - | chr4.3:15238925-15238944 | MS.gene023520:intron | 15.0% |
| !!! | AATCATTTAAAGTGTATTTA+GGG | - | chr4.3:15238926-15238945 | MS.gene023520:intron | 15.0% |
| !!! | ACAAATAAAAAGTATCATTT+GGG | + | chr4.3:15239494-15239513 | None:intergenic | 15.0% |
| !!! | CAATTTCTTTTTTTAAAGTT+AGG | + | chr4.3:15239406-15239425 | None:intergenic | 15.0% |
| !!! | GACATTTTTTTTTAGAAAAT+GGG | + | chr4.3:15238515-15238534 | None:intergenic | 15.0% |
| !!! | TTTTTAAACTTTTAATGCAA+TGG | - | chr4.3:15239227-15239246 | MS.gene023520:intron | 15.0% |
| !! | AAAAAAAGAAATTGATGTAG+AGG | - | chr4.3:15239412-15239431 | MS.gene023520:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr4.3:15238625-15238644 | None:intergenic | 20.0% |
| !! | AATATAGAAACAAAAGACTA+AGG | - | chr4.3:15238161-15238180 | MS.gene023520:intron | 20.0% |
| !! | GTTTGAAGAGAATAAAAATT+AGG | - | chr4.3:15239018-15239037 | MS.gene023520:intron | 20.0% |
| !! | TAACATTTATAGTTAAACCA+AGG | + | chr4.3:15237855-15237874 | None:intergenic | 20.0% |
| !! | TTATTAAAGATCATATAGTG+TGG | + | chr4.3:15238441-15238460 | None:intergenic | 20.0% |
| !!! | GACAAATAAAAAGTATCATT+TGG | + | chr4.3:15239495-15239514 | None:intergenic | 20.0% |
| !!! | GGACATTTTTTTTTAGAAAA+TGG | + | chr4.3:15238516-15238535 | None:intergenic | 20.0% |
| !!! | TATTTTTGGATAAAAGTGAT+TGG | - | chr4.3:15239642-15239661 | MS.gene023520:CDS | 20.0% |
| !!! | TGAAACAAATATCAAACTTT+TGG | + | chr4.3:15238006-15238025 | None:intergenic | 20.0% |
| !!! | TGATTTAAAATTTCCACTTT+TGG | + | chr4.3:15239197-15239216 | None:intergenic | 20.0% |
| !!! | TTTTCTATCACATAATAAAG+TGG | - | chr4.3:15238304-15238323 | MS.gene023520:intron | 20.0% |
| ! | AAGTAGGAAACTAAAACAAA+TGG | + | chr4.3:15239795-15239814 | None:intergenic | 25.0% |
| ! | ACCAATACATTGAGTTATAT+TGG | + | chr4.3:15237917-15237936 | None:intergenic | 25.0% |
| ! | ACCAATATAACTCAATGTAT+TGG | - | chr4.3:15237913-15237932 | MS.gene023520:intron | 25.0% |
| ! | AGTAAATAAAATTTACCTGG+AGG | + | chr4.3:15238119-15238138 | None:intergenic | 25.0% |
| ! | ATACATTGAGTTATATTGGT+AGG | + | chr4.3:15237913-15237932 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr4.3:15238626-15238645 | None:intergenic | 25.0% |
| ! | TTATAGTTAAACCAAGGTTT+GGG | + | chr4.3:15237849-15237868 | None:intergenic | 25.0% |
| ! | TTTATAGTTAAACCAAGGTT+TGG | + | chr4.3:15237850-15237869 | None:intergenic | 25.0% |
| !! | ATCTCATTTGATTTCATTCT+AGG | - | chr4.3:15239584-15239603 | MS.gene023520:CDS | 25.0% |
| !! | TATTTTTCTCCAAGGATTTT+TGG | + | chr4.3:15238082-15238101 | None:intergenic | 25.0% |
| !! | TTAATAGAGATTTAGAGTGA+AGG | + | chr4.3:15239562-15239581 | None:intergenic | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr4.3:15238538-15238557 | None:intergenic | 25.0% |
| !!! | CACTATTTTGATTGACATTT+GGG | + | chr4.3:15238732-15238751 | None:intergenic | 25.0% |
| !!! | TCACTATTTTGATTGACATT+TGG | + | chr4.3:15238733-15238752 | None:intergenic | 25.0% |
| !!! | TCCTTGTATTTTACTGATTT+GGG | + | chr4.3:15238196-15238215 | None:intergenic | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | + | chr4.3:15238537-15238556 | None:intergenic | 25.0% |
| !!! | TGATCTTGCTTGTTTATTTT+TGG | - | chr4.3:15239628-15239647 | MS.gene023520:CDS | 25.0% |
| !!! | TTCCTTGTATTTTACTGATT+TGG | + | chr4.3:15238197-15238216 | None:intergenic | 25.0% |
| AAAATACAAGGAAGTCAAGA+AGG | - | chr4.3:15238204-15238223 | MS.gene023520:intron | 30.0% | |
| AAATACAAGGAAGTCAAGAA+GGG | - | chr4.3:15238205-15238224 | MS.gene023520:intron | 30.0% | |
| AATTCATTAATTGCAGCTAG+TGG | - | chr4.3:15239672-15239691 | MS.gene023520:CDS | 30.0% | |
| ACCCAAATCAGTAAAATACA+AGG | - | chr4.3:15238192-15238211 | MS.gene023520:intron | 30.0% | |
| AGACTCGAAAAACAAATTGA+GGG | - | chr4.3:15239467-15239486 | MS.gene023520:intron | 30.0% | |
| CCTAGGTTTGTATATATCAA+CGG | - | chr4.3:15238245-15238264 | MS.gene023520:intron | 30.0% | |
| CTAGGTTTGTATATATCAAC+GGG | - | chr4.3:15238246-15238265 | MS.gene023520:intron | 30.0% | |
| TAACAAAACATGAAGACCTA+AGG | + | chr4.3:15239533-15239552 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr4.3:15238641-15238660 | None:intergenic | 30.0% | |
| TTTGTCTTGGTTAATATCTG+AGG | + | chr4.3:15237671-15237690 | None:intergenic | 30.0% | |
| ! | ACAATCCTTTGGTAACTTAA+GGG | + | chr4.3:15237884-15237903 | None:intergenic | 30.0% |
| ! | ATTTTCCTAGTCCTTATGTT+TGG | - | chr4.3:15237637-15237656 | MS.gene023520:CDS | 30.0% |
| ! | TACAATCCTTTGGTAACTTA+AGG | + | chr4.3:15237885-15237904 | None:intergenic | 30.0% |
| ! | TTTGAAACCTAAATCACATG+AGG | - | chr4.3:15238037-15238056 | MS.gene023520:intron | 30.0% |
| ACAATCTATGGTTGGAGATT+TGG | + | chr4.3:15237755-15237774 | None:intergenic | 35.0% | |
| ACAATTGCTCAAGACAAGAA+CGG | - | chr4.3:15239717-15239736 | MS.gene023520:CDS | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr4.3:15238502-15238521 | None:intergenic | 35.0% | |
| AGGTTACAAGACCAAACATA+AGG | + | chr4.3:15237651-15237670 | None:intergenic | 35.0% | |
| CATAAGGACTAGGAAAATCA+AGG | + | chr4.3:15237635-15237654 | None:intergenic | 35.0% | |
| CCGTTGATATATACAAACCT+AGG | + | chr4.3:15238248-15238267 | None:intergenic | 35.0% | |
| GAGACTCGAAAAACAAATTG+AGG | - | chr4.3:15239466-15239485 | MS.gene023520:intron | 35.0% | |
| GATATATACAAACCTAGGTG+TGG | + | chr4.3:15238243-15238262 | None:intergenic | 35.0% | |
| GGTCATCATGATCTTTGATA+AGG | + | chr4.3:15237828-15237847 | None:intergenic | 35.0% | |
| ! | TTGGCTTGATTAGTCACAAA+GGG | + | chr4.3:15237736-15237755 | None:intergenic | 35.0% |
| !! | TTTACTGATTTGGGTCATGT+GGG | + | chr4.3:15238187-15238206 | None:intergenic | 35.0% |
| !! | TTTGGCTTGATTAGTCACAA+AGG | + | chr4.3:15237737-15237756 | None:intergenic | 35.0% |
| !!! | TTTTACTGATTTGGGTCATG+TGG | + | chr4.3:15238188-15238207 | None:intergenic | 35.0% |
| AAATTTACCTGGAGGAACTG+CGG | + | chr4.3:15238111-15238130 | None:intergenic | 40.0% | |
| ACCTAAATCACATGAGGCTA+AGG | - | chr4.3:15238043-15238062 | MS.gene023520:intron | 40.0% | |
| ACCTTAGCCTCATGTGATTT+AGG | + | chr4.3:15238047-15238066 | None:intergenic | 40.0% | |
| AGCCAAAGTAAGGAGTTTGT+CGG | + | chr4.3:15237704-15237723 | None:intergenic | 40.0% | |
| AGCTCTTGGCTCAGATAAAT+TGG | - | chr4.3:15238684-15238703 | MS.gene023520:intron | 40.0% | |
| ATCTGTGTGAAATGAGCTCT+TGG | - | chr4.3:15238670-15238689 | MS.gene023520:intron | 40.0% | |
| CAACGACTCTAAATAGCCTT+AGG | - | chr4.3:15239514-15239533 | MS.gene023520:CDS | 40.0% | |
| CAAGACCAAACATAAGGACT+AGG | + | chr4.3:15237645-15237664 | None:intergenic | 40.0% | |
| CATATAGTGTGGTCCAGTAA+GGG | + | chr4.3:15238430-15238449 | None:intergenic | 40.0% | |
| CTGGTTAAGGAATCCAAAAG+TGG | - | chr4.3:15239181-15239200 | MS.gene023520:intron | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | + | chr4.3:15238501-15238520 | None:intergenic | 40.0% | |
| GCTCTTGGCTCAGATAAATT+GGG | - | chr4.3:15238685-15238704 | MS.gene023520:intron | 40.0% | |
| GTAGGTGAGTTACAATCCTT+TGG | + | chr4.3:15237895-15237914 | None:intergenic | 40.0% | |
| TATACAAACCTAGGTGTGGA+TGG | + | chr4.3:15238239-15238258 | None:intergenic | 40.0% | |
| TCATATAGTGTGGTCCAGTA+AGG | + | chr4.3:15238431-15238450 | None:intergenic | 40.0% | |
| TGAGGACTTCCAAAAATCCT+TGG | - | chr4.3:15238070-15238089 | MS.gene023520:intron | 40.0% | |
| TGTGCTTGTTTCATTTCCAG+TGG | + | chr4.3:15239700-15239719 | None:intergenic | 40.0% | |
| TTGGCTCAGATAAATTGGGA+CGG | - | chr4.3:15238689-15238708 | MS.gene023520:intron | 40.0% | |
| ! | ACATGAGGCTAAGGTATTTG+AGG | - | chr4.3:15238052-15238071 | MS.gene023520:intron | 40.0% |
| ! | AGCGTAGCATTGAAACTTCA+AGG | - | chr4.3:15239357-15239376 | MS.gene023520:CDS | 40.0% |
| ! | CTTTGGTAACTTAAGGGCAA+GGG | + | chr4.3:15237878-15237897 | None:intergenic | 40.0% |
| ! | CTTTTGGATTCCTTAACCAG+TGG | + | chr4.3:15239181-15239200 | None:intergenic | 40.0% |
| !!! | GGTGGAAGTATTTTTCTCCA+AGG | + | chr4.3:15238090-15238109 | None:intergenic | 40.0% |
| ACTTAATACTCCCTTCGTCC+CGG | - | chr4.3:15238480-15238499 | MS.gene023520:intron | 45.0% | |
| ATTAATCGAGCTGCCCTTAC+TGG | - | chr4.3:15238414-15238433 | MS.gene023520:intron | 45.0% | |
| ATTGCTCAAGACAAGAACGG+TGG | - | chr4.3:15239720-15239739 | MS.gene023520:CDS | 45.0% | |
| CACCGACAAACTCCTTACTT+TGG | - | chr4.3:15237699-15237718 | MS.gene023520:CDS | 45.0% | |
| CCAACCATAGATTGTTGCAC+TGG | - | chr4.3:15237760-15237779 | MS.gene023520:intron | 45.0% | |
| CCAGTGCAACAATCTATGGT+TGG | + | chr4.3:15237763-15237782 | None:intergenic | 45.0% | |
| CCTTGCCCTTAAGTTACCAA+AGG | - | chr4.3:15237876-15237895 | MS.gene023520:intron | 45.0% | |
| CTCAGATAAATTGGGACGGA+GGG | - | chr4.3:15238693-15238712 | MS.gene023520:intron | 45.0% | |
| GAAGACAACCAGCCAAAGTA+AGG | + | chr4.3:15237714-15237733 | None:intergenic | 45.0% | |
| GACAAACTCCTTACTTTGGC+TGG | - | chr4.3:15237703-15237722 | MS.gene023520:CDS | 45.0% | |
| GACACCAGTGCAACAATCTA+TGG | + | chr4.3:15237767-15237786 | None:intergenic | 45.0% | |
| GATCATGATGACCCAAACCT+TGG | - | chr4.3:15237835-15237854 | MS.gene023520:intron | 45.0% | |
| GGTTGCACAACTTTCAAAGC+AGG | - | chr4.3:15239248-15239267 | MS.gene023520:intron | 45.0% | |
| TACAAGGAAGTCAAGAAGGG+TGG | - | chr4.3:15238208-15238227 | MS.gene023520:intron | 45.0% | |
| TGGAATTTCCATCCACACCT+AGG | - | chr4.3:15238228-15238247 | MS.gene023520:intron | 45.0% | |
| ! | CCTTTGGTAACTTAAGGGCA+AGG | + | chr4.3:15237879-15237898 | None:intergenic | 45.0% |
| ! | TTGTTGCACTGGTGTCAAAG+AGG | - | chr4.3:15237771-15237790 | MS.gene023520:intron | 45.0% |
| !! | GTAGATTTTAACCAGTGCCC+CGG | - | chr4.3:15239154-15239173 | MS.gene023520:intron | 45.0% |
| !! | TAGATTTTAACCAGTGCCCC+GGG | - | chr4.3:15239155-15239174 | MS.gene023520:intron | 45.0% |
| AAAGAGGTGGCTCTTGGTAG+AGG | - | chr4.3:15239752-15239771 | MS.gene023520:CDS | 50.0% | |
| ATTGCAGCTAGTGGTACCAC+TGG | - | chr4.3:15239681-15239700 | MS.gene023520:CDS | 50.0% | |
| CGGTGCATTCTGCTTTGTCT+TGG | + | chr4.3:15237684-15237703 | None:intergenic | 50.0% | |
| GAAATGTTAACCAGTGCCCG+AGG | + | chr4.3:15239304-15239323 | None:intergenic | 50.0% | |
| GCTCAGATAAATTGGGACGG+AGG | - | chr4.3:15238692-15238711 | MS.gene023520:intron | 50.0% | |
| GTCAGATATTCCGGGACGAA+GGG | + | chr4.3:15238493-15238512 | None:intergenic | 50.0% | |
| TGACTCCTTAACCAGTGCCT+CGG | - | chr4.3:15239284-15239303 | MS.gene023520:intron | 50.0% | |
| TTGTGGAAAGAGGTGGCTCT+TGG | - | chr4.3:15239746-15239765 | MS.gene023520:CDS | 50.0% | |
| !! | CTCTTGGTAGAGGTGCTTTG+TGG | - | chr4.3:15239762-15239781 | MS.gene023520:CDS | 50.0% |
| ATTCCTTAACCAGTGGCCCG+GGG | + | chr4.3:15239174-15239193 | None:intergenic | 55.0% | |
| GACTCCTTAACCAGTGCCTC+GGG | - | chr4.3:15239285-15239304 | MS.gene023520:intron | 55.0% | |
| GATTCCTTAACCAGTGGCCC+GGG | + | chr4.3:15239175-15239194 | None:intergenic | 55.0% | |
| GCTCAAGACAAGAACGGTGG+CGG | - | chr4.3:15239723-15239742 | MS.gene023520:CDS | 55.0% | |
| GGATTCCTTAACCAGTGGCC+CGG | + | chr4.3:15239176-15239195 | None:intergenic | 55.0% | |
| GGTCAGATATTCCGGGACGA+AGG | + | chr4.3:15238494-15238513 | None:intergenic | 55.0% | |
| TTTACCTGGAGGAACTGCGG+TGG | + | chr4.3:15238108-15238127 | None:intergenic | 55.0% | |
| ACTTCCACCGCAGTTCCTCC+AGG | - | chr4.3:15238101-15238120 | MS.gene023520:intron | 60.0% | |
| GTGGCGGTTGTGGAAAGAGG+TGG | - | chr4.3:15239739-15239758 | MS.gene023520:CDS | 60.0% | |
| TTAACCAGTGCCCGAGGCAC+TGG | + | chr4.3:15239298-15239317 | None:intergenic | 60.0% | |
| TTAACCAGTGCCTCGGGCAC+TGG | - | chr4.3:15239291-15239310 | MS.gene023520:intron | 60.0% | |
| ! | ACGGTGGCGGTTGTGGAAAG+AGG | - | chr4.3:15239736-15239755 | MS.gene023520:CDS | 60.0% |
| ! | GACAAGAACGGTGGCGGTTG+TGG | - | chr4.3:15239729-15239748 | MS.gene023520:CDS | 60.0% |
| !! | AGTGCCCGAGGCACTGGTTA+AGG | + | chr4.3:15239292-15239311 | None:intergenic | 60.0% |
| TAACCAGTGCCCCGGGCCAC+TGG | - | chr4.3:15239162-15239181 | MS.gene023520:intron | 70.0% | |
| TAACCAGTGGCCCGGGGCAC+TGG | + | chr4.3:15239168-15239187 | None:intergenic | 70.0% | |
| ! | GTGCCCCGGGCCACTGGTTA+AGG | - | chr4.3:15239168-15239187 | MS.gene023520:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 15237592 | 15239827 | 15237592 | ID=MS.gene023520 |
| chr4.3 | mRNA | 15237592 | 15239827 | 15237592 | ID=MS.gene023520.t1;Parent=MS.gene023520 |
| chr4.3 | exon | 15239485 | 15239827 | 15239485 | ID=MS.gene023520.t1.exon1;Parent=MS.gene023520.t1 |
| chr4.3 | CDS | 15239485 | 15239827 | 15239485 | ID=cds.MS.gene023520.t1;Parent=MS.gene023520.t1 |
| chr4.3 | exon | 15239297 | 15239392 | 15239297 | ID=MS.gene023520.t1.exon2;Parent=MS.gene023520.t1 |
| chr4.3 | CDS | 15239297 | 15239392 | 15239297 | ID=cds.MS.gene023520.t1;Parent=MS.gene023520.t1 |
| chr4.3 | exon | 15237592 | 15237731 | 15237592 | ID=MS.gene023520.t1.exon3;Parent=MS.gene023520.t1 |
| chr4.3 | CDS | 15237592 | 15237731 | 15237592 | ID=cds.MS.gene023520.t1;Parent=MS.gene023520.t1 |
| Gene Sequence |
| Protein sequence |
