Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43740.t1 | XP_024639822.1 | 99.3 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.00E+00 | 1163.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43740.t1 | G7KE15 | 99.3 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.0e+00 | 1163.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene43740 | 0.809714 | 1.65E-50 | -1.69E-46 |
| MS.gene049418 | MS.gene43740 | 0.862535 | 4.73E-64 | -1.69E-46 |
| MS.gene049807 | MS.gene43740 | 0.821975 | 3.03E-53 | -1.69E-46 |
| MS.gene049887 | MS.gene43740 | 0.84848 | 5.97E-60 | -1.69E-46 |
| MS.gene050194 | MS.gene43740 | 0.806363 | 8.53E-50 | -1.69E-46 |
| MS.gene050630 | MS.gene43740 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene43740 | 0.806924 | 6.49E-50 | -1.69E-46 |
| MS.gene051042 | MS.gene43740 | 0.820444 | 6.84E-53 | -1.69E-46 |
| MS.gene051067 | MS.gene43740 | 0.837907 | 3.94E-57 | -1.69E-46 |
| MS.gene051478 | MS.gene43740 | 0.802361 | 5.82E-49 | -1.69E-46 |
| MS.gene051781 | MS.gene43740 | 0.826477 | 2.66E-54 | -1.69E-46 |
| MS.gene051784 | MS.gene43740 | 0.818637 | 1.77E-52 | -1.69E-46 |
| MS.gene051787 | MS.gene43740 | 0.813692 | 2.25E-51 | -1.69E-46 |
| MS.gene051885 | MS.gene43740 | 0.836693 | 8.06E-57 | -1.69E-46 |
| MS.gene052155 | MS.gene43740 | -0.826108 | 3.25E-54 | -1.69E-46 |
| MS.gene052731 | MS.gene43740 | 0.818083 | 2.36E-52 | -1.69E-46 |
| MS.gene052732 | MS.gene43740 | 0.857495 | 1.57E-62 | -1.69E-46 |
| MS.gene053143 | MS.gene43740 | 0.802479 | 5.50E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene43740 | 0.920827 | 7.81E-88 | -1.69E-46 |
| MS.gene053174 | MS.gene43740 | 0.816689 | 4.86E-52 | -1.69E-46 |
| MS.gene053536 | MS.gene43740 | 0.850052 | 2.18E-60 | -1.69E-46 |
| MS.gene053538 | MS.gene43740 | 0.856248 | 3.66E-62 | -1.69E-46 |
| MS.gene053581 | MS.gene43740 | 0.847104 | 1.43E-59 | -1.69E-46 |
| MS.gene054550 | MS.gene43740 | 0.808796 | 2.60E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene43740 | 0.904213 | 1.55E-79 | -1.69E-46 |
| MS.gene055465 | MS.gene43740 | 0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene43740 | 0.805962 | 1.04E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene43740 | 0.819409 | 1.18E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene43740 | 0.838082 | 3.55E-57 | -1.69E-46 |
| MS.gene055580 | MS.gene43740 | -0.87265 | 2.70E-67 | -1.69E-46 |
| MS.gene055764 | MS.gene43740 | 0.806811 | 6.86E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene43740 | 0.805772 | 1.14E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene43740 | 0.818787 | 1.63E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene43740 | -0.866957 | 1.95E-65 | -1.69E-46 |
| MS.gene056075 | MS.gene43740 | 0.802792 | 4.74E-49 | -1.69E-46 |
| MS.gene056228 | MS.gene43740 | 0.812663 | 3.78E-51 | -1.69E-46 |
| MS.gene056368 | MS.gene43740 | 0.815265 | 1.01E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene43740 | 0.86338 | 2.59E-64 | -1.69E-46 |
| MS.gene05894 | MS.gene43740 | 0.820369 | 7.11E-53 | -1.69E-46 |
| MS.gene059154 | MS.gene43740 | 0.805632 | 1.22E-49 | -1.69E-46 |
| MS.gene059424 | MS.gene43740 | 0.840816 | 6.92E-58 | -1.69E-46 |
| MS.gene060194 | MS.gene43740 | 0.826746 | 2.29E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene43740 | 0.806351 | 8.58E-50 | -1.69E-46 |
| MS.gene060884 | MS.gene43740 | 0.832664 | 8.31E-56 | -1.69E-46 |
| MS.gene060886 | MS.gene43740 | 0.837306 | 5.62E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09087 | MS.gene43740 | PPI |
| MS.gene43740 | MS.gene08769 | PPI |
| MS.gene43740 | MS.gene023532 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43740.t1 | MTR_5g069410 | 99.293 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.0 | 1179 |
| MS.gene43740.t1 | MTR_8g085780 | 48.325 | 567 | 265 | 6 | 14 | 561 | 16 | 573 | 0.0 | 565 |
| MS.gene43740.t1 | MTR_8g106395 | 23.948 | 309 | 190 | 9 | 271 | 553 | 75 | 364 | 6.52e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43740.t1 | AT4G12700 | 74.427 | 567 | 134 | 5 | 1 | 564 | 1 | 559 | 0.0 | 895 |
| MS.gene43740.t1 | AT2G04280 | 74.868 | 569 | 135 | 6 | 1 | 564 | 1 | 566 | 0.0 | 895 |
| MS.gene43740.t1 | AT4G08810 | 47.965 | 565 | 254 | 5 | 16 | 561 | 9 | 552 | 0.0 | 521 |
| MS.gene43740.t1 | AT3G56750 | 23.718 | 312 | 186 | 11 | 271 | 553 | 87 | 375 | 3.66e-16 | 81.3 |
| MS.gene43740.t1 | AT2G41150 | 22.581 | 310 | 193 | 10 | 271 | 553 | 87 | 376 | 3.96e-16 | 81.3 |
Find 126 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGTTTAGTGTTGTTAGTA+TGG | 0.260774 | 5.1:+53843195 | MS.gene43740:CDS |
| CAATAGCTTCAAGGTTAAAC+TGG | 0.270199 | 5.1:+53843866 | MS.gene43740:CDS |
| GGTTTCAGACCAGAGAATTT+AGG | 0.279478 | 5.1:+53842641 | MS.gene43740:CDS |
| TTCATCTGGTCGAGGATTAC+AGG | 0.297935 | 5.1:+53843671 | MS.gene43740:CDS |
| GCTTTAATCATGAGAAAGTT+TGG | 0.298138 | 5.1:+53843727 | MS.gene43740:CDS |
| TTTATGTGGGTGGTGGAGAT+AGG | 0.323850 | 5.1:+53843395 | MS.gene43740:CDS |
| AAAGGCCATGGCATTTGATA+TGG | 0.327645 | 5.1:+53843812 | MS.gene43740:CDS |
| TAAATTTGGGAAACCTGTTC+CGG | 0.333058 | 5.1:+53843060 | MS.gene43740:CDS |
| ACTCAGTGTGAGGGGAATTC+AGG | 0.333650 | 5.1:+53842956 | MS.gene43740:CDS |
| CCATAACCAATGTTCGGTTT+AGG | 0.341807 | 5.1:-53843477 | None:intergenic |
| AGTGTTTGTTATTGGTGTTT+TGG | 0.342766 | 5.1:+53842703 | MS.gene43740:CDS |
| ACTCTATACCAATAGTTATC+AGG | 0.346554 | 5.1:-53843760 | None:intergenic |
| GGATGAAACAAAGGATCTTC+AGG | 0.354420 | 5.1:-53842755 | None:intergenic |
| TTCACATCCATAAGTTTCAT+TGG | 0.367179 | 5.1:-53843700 | None:intergenic |
| AGAGAAGACATCGTCGAATC+TGG | 0.368044 | 5.1:+53843276 | MS.gene43740:CDS |
| GGTCACACCAATGAAACTTA+TGG | 0.375350 | 5.1:+53843693 | MS.gene43740:CDS |
| TGTTGGACAAGGATCAGTTT+TGG | 0.376150 | 5.1:+53843608 | MS.gene43740:CDS |
| TCAACGAGTATAAGGAACTT+TGG | 0.387999 | 5.1:+53844094 | MS.gene43740:CDS |
| CCTAAACCGAACATTGGTTA+TGG | 0.388632 | 5.1:+53843477 | MS.gene43740:CDS |
| CAGAATACTATGGCCATGAT+TGG | 0.392276 | 5.1:+53842665 | MS.gene43740:CDS |
| GTCAATGCGTTGCCGGTTGT+TGG | 0.394102 | 5.1:+53843304 | MS.gene43740:CDS |
| GAGGTATGTGCATCAAGATT+TGG | 0.397669 | 5.1:-53843946 | None:intergenic |
| CAACGAGTATAAGGAACTTT+GGG | 0.400281 | 5.1:+53844095 | MS.gene43740:CDS |
| GTGATATGGCGTGGAGGTAT+AGG | 0.404031 | 5.1:+53843101 | MS.gene43740:CDS |
| TGCACTTCTCTCAACCTTAC+GGG | 0.405105 | 5.1:+53843975 | MS.gene43740:CDS |
| AGGTAAATACTTGGTTTATG+TGG | 0.409434 | 5.1:+53843381 | MS.gene43740:CDS |
| GGATCAGGTCAATGCGTTGC+CGG | 0.418320 | 5.1:+53843297 | MS.gene43740:CDS |
| TAACAGTGATTAAGAATGTT+GGG | 0.418456 | 5.1:+53842593 | None:intergenic |
| GAATGATAGTACCTGTGATA+TGG | 0.418806 | 5.1:+53843087 | MS.gene43740:CDS |
| GCTACTAATGAGTCTGTGTT+TGG | 0.419365 | 5.1:+53842869 | MS.gene43740:CDS |
| TCAGGGTTCTTACAATCAAT+AGG | 0.421487 | 5.1:-53842980 | None:intergenic |
| ATGGAAATCGAGGCGATTGA+TGG | 0.422328 | 5.1:+53843831 | MS.gene43740:CDS |
| TGGAGTTTCTTGTGTGCTCT+AGG | 0.424785 | 5.1:+53843442 | MS.gene43740:CDS |
| GGCGTTCCAGTAGAATTTGA+TGG | 0.427805 | 5.1:+53844162 | MS.gene43740:CDS |
| AAATTTGGGAAACCTGTTCC+GGG | 0.431548 | 5.1:+53843061 | MS.gene43740:CDS |
| GATAACAGTGTTGTGAAAAC+TGG | 0.435692 | 5.1:+53842833 | MS.gene43740:CDS |
| ACGTTTAGTGTTGTTAGTAT+GGG | 0.436986 | 5.1:+53843196 | MS.gene43740:CDS |
| TAGTGTCTGCAATAGCTTCA+AGG | 0.440816 | 5.1:+53843857 | MS.gene43740:CDS |
| CGTTTAGTGTTGTTAGTATG+GGG | 0.454205 | 5.1:+53843197 | MS.gene43740:CDS |
| AATGTTGTAATCTTAGTTGA+AGG | 0.455380 | 5.1:-53842776 | None:intergenic |
| TTCACAAATTCTCCAACAAC+CGG | 0.456505 | 5.1:-53843316 | None:intergenic |
| GTATTCTGACCTAAATTCTC+TGG | 0.456518 | 5.1:-53842650 | None:intergenic |
| ATGTAACCATCAAATTCTAC+TGG | 0.457405 | 5.1:-53844168 | None:intergenic |
| AATTTACACTTCATCGAAGC+AGG | 0.462106 | 5.1:+53843522 | MS.gene43740:CDS |
| AGATGGGATGAATCTTCATC+TGG | 0.466104 | 5.1:+53843657 | MS.gene43740:CDS |
| GAATTTAGGTCAGAATACTA+TGG | 0.467250 | 5.1:+53842655 | MS.gene43740:CDS |
| GAACTTTCCGACTCAACTAC+AGG | 0.470123 | 5.1:-53843349 | None:intergenic |
| AGGCGAGGAACAAAGAGCTT+TGG | 0.473800 | 5.1:+53843923 | MS.gene43740:CDS |
| TCATGTTGTGAGAGGGGAAA+AGG | 0.479362 | 5.1:+53843903 | MS.gene43740:CDS |
| CTATCATTCGAACCCGGAAC+AGG | 0.480882 | 5.1:-53843073 | None:intergenic |
| TTCGTCAACCTTGTCCCGTA+AGG | 0.484068 | 5.1:-53843989 | None:intergenic |
| ATCAGACTTAAAAGTAGCAT+TGG | 0.486545 | 5.1:-53842813 | None:intergenic |
| AAGGTTGAGAGAAGTGCATC+GGG | 0.490128 | 5.1:-53843970 | None:intergenic |
| TTCTCTGGTCTGAAACCTCC+AGG | 0.490679 | 5.1:-53842635 | None:intergenic |
| ATGCACTTCTCTCAACCTTA+CGG | 0.491937 | 5.1:+53843974 | MS.gene43740:CDS |
| GCCGCAGCCTTCCCATCCTT+CGG | 0.493260 | 5.1:-53843124 | None:intergenic |
| ATTTAGTCAAGGTAAATACT+TGG | 0.498121 | 5.1:+53843372 | MS.gene43740:CDS |
| TTTGGGCAGATTGGAGTAAG+TGG | 0.499384 | 5.1:+53843626 | MS.gene43740:CDS |
| TCAAATCCATAACCAATGTT+CGG | 0.500832 | 5.1:-53843483 | None:intergenic |
| GACATCGTCGAATCTGGATC+AGG | 0.504087 | 5.1:+53843282 | MS.gene43740:CDS |
| ATGTCGAGCCTGATAACTAT+TGG | 0.506139 | 5.1:+53843752 | MS.gene43740:CDS |
| AAAACAAACATTCCCAATCA+TGG | 0.507885 | 5.1:-53842678 | None:intergenic |
| CACTTCATCGAAGCAGGATG+AGG | 0.511044 | 5.1:+53843528 | MS.gene43740:CDS |
| GGTAAATACTTGGTTTATGT+GGG | 0.513383 | 5.1:+53843382 | MS.gene43740:CDS |
| GGATCAAAGAAAGATGCATC+AGG | 0.513790 | 5.1:-53844042 | None:intergenic |
| AGAATACTATGGCCATGATT+GGG | 0.518270 | 5.1:+53842666 | MS.gene43740:CDS |
| CTGGTATGAATGCGAGGAAG+AGG | 0.518699 | 5.1:+53843230 | MS.gene43740:CDS |
| ATCTTTCTTTGATCCTCTGA+AGG | 0.524319 | 5.1:+53844050 | MS.gene43740:CDS |
| AGGAAGAAGAATCAGAAGGC+TGG | 0.529198 | 5.1:+53843250 | MS.gene43740:CDS |
| GAAGGAGGCGGCGTCTGTGT+TGG | 0.531021 | 5.1:+53843591 | MS.gene43740:CDS |
| TGGAGGTATAGGCCGAAGGA+TGG | 0.536112 | 5.1:+53843112 | MS.gene43740:CDS |
| TACTTGGTTTATGTGGGTGG+TGG | 0.539901 | 5.1:+53843388 | MS.gene43740:CDS |
| TCTCTCAACCTTACGGGACA+AGG | 0.545064 | 5.1:+53843981 | MS.gene43740:CDS |
| GATACCATCCTTGCAATCAC+TGG | 0.552369 | 5.1:-53844259 | None:intergenic |
| TTGACCAGTGATTGCAAGGA+TGG | 0.552652 | 5.1:+53844255 | MS.gene43740:CDS |
| AAAGCATGAATCACTTCTTG+TGG | 0.553481 | 5.1:+53843422 | MS.gene43740:CDS |
| GTTTAGTGTTGTTAGTATGG+GGG | 0.554390 | 5.1:+53843198 | MS.gene43740:CDS |
| CGGTGAGACTAATGAGGCTG+AGG | 0.557626 | 5.1:+53842931 | MS.gene43740:CDS |
| GGCATTTGATATGGAAATCG+AGG | 0.561183 | 5.1:+53843821 | MS.gene43740:CDS |
| GTTCATTTGTAGCAATGTAG+AGG | 0.561206 | 5.1:-53844020 | None:intergenic |
| AAATACTTGGTTTATGTGGG+TGG | 0.565916 | 5.1:+53843385 | MS.gene43740:CDS |
| GATGTTGATAACTCGGTTAG+CGG | 0.568706 | 5.1:+53842911 | MS.gene43740:CDS |
| TATGACTGATGTTGATAACT+CGG | 0.569096 | 5.1:+53842904 | MS.gene43740:CDS |
| GTATAGGCCGAAGGATGGGA+AGG | 0.570064 | 5.1:+53843117 | MS.gene43740:CDS |
| ACTCAGTTCATGTTGTGAGA+GGG | 0.571566 | 5.1:+53843896 | MS.gene43740:CDS |
| GACTCAGTTCATGTTGTGAG+AGG | 0.575510 | 5.1:+53843895 | MS.gene43740:CDS |
| AATCTGTTGTTCAAAGGCCA+TGG | 0.581613 | 5.1:+53843800 | MS.gene43740:CDS |
| GTTGAATACTTATCCTTCAG+AGG | 0.583499 | 5.1:-53844063 | None:intergenic |
| CAGCCTCCCTGTAGTTGAGT+CGG | 0.583590 | 5.1:+53843342 | MS.gene43740:CDS |
| CTCAGTTCATGTTGTGAGAG+GGG | 0.585625 | 5.1:+53843897 | MS.gene43740:CDS |
| TAAGGTTGAGAGAAGTGCAT+CGG | 0.587272 | 5.1:-53843971 | None:intergenic |
| ATACCTCCACGCCATATCAC+AGG | 0.588167 | 5.1:-53843098 | None:intergenic |
| AATAGCTTCAAGGTTAAACT+GGG | 0.590944 | 5.1:+53843867 | MS.gene43740:CDS |
| GAGACAACAAAACTCAATAA+CGG | 0.592530 | 5.1:+53844141 | MS.gene43740:CDS |
| AGACAGAATCTGTTGTTCAA+AGG | 0.593771 | 5.1:+53843794 | MS.gene43740:CDS |
| GGAGGTATAGGCCGAAGGAT+GGG | 0.595782 | 5.1:+53843113 | MS.gene43740:CDS |
| TCGGAAAGTTCATTTAGTCA+AGG | 0.597241 | 5.1:+53843361 | MS.gene43740:CDS |
| TCATCTGGTCGAGGATTACA+GGG | 0.598635 | 5.1:+53843672 | MS.gene43740:CDS |
| GCCGAAGGATGGGAAGGCTG+CGG | 0.599090 | 5.1:+53843123 | MS.gene43740:CDS |
| TGATTTGACCAGTGATTGCA+AGG | 0.600244 | 5.1:+53844251 | MS.gene43740:CDS |
| ATCATACTGGTATGAATGCG+AGG | 0.603806 | 5.1:+53843224 | MS.gene43740:CDS |
| TCATCGAAGCAGGATGAGGA+AGG | 0.609494 | 5.1:+53843532 | MS.gene43740:CDS |
| GGCGGCGTCTGTGTTGGACA+AGG | 0.610283 | 5.1:+53843597 | MS.gene43740:CDS |
| TTAGTTGAAGGATGAAACAA+AGG | 0.610506 | 5.1:-53842764 | None:intergenic |
| GATGAATCTTCATCTGGTCG+AGG | 0.613587 | 5.1:+53843663 | MS.gene43740:CDS |
| CTGAGGTGACTCAGTGTGAG+GGG | 0.614034 | 5.1:+53842948 | MS.gene43740:CDS |
| GGCGTGGAGGTATAGGCCGA+AGG | 0.618753 | 5.1:+53843108 | MS.gene43740:CDS |
| GATTTCCATATCAAATGCCA+TGG | 0.621642 | 5.1:-53843817 | None:intergenic |
| AACTTTCCGACTCAACTACA+GGG | 0.628434 | 5.1:-53843348 | None:intergenic |
| GGTTAGCGGTGAGACTAATG+AGG | 0.629932 | 5.1:+53842925 | MS.gene43740:CDS |
| AGTGATTAAGAATGTTGGGT+CGG | 0.631650 | 5.1:+53842597 | None:intergenic |
| TCAGTACCTAAACCGAACAT+TGG | 0.632278 | 5.1:+53843471 | MS.gene43740:CDS |
| TTTGGGATGAGACTAGTGAA+TGG | 0.636894 | 5.1:+53844112 | MS.gene43740:CDS |
| GCTGAGGTGACTCAGTGTGA+GGG | 0.644517 | 5.1:+53842947 | MS.gene43740:CDS |
| TTGTGAGAGGGGAAAAGGCG+AGG | 0.644621 | 5.1:+53843908 | MS.gene43740:CDS |
| GGTTGAGAGAAGTGCATCGG+GGG | 0.648446 | 5.1:-53843968 | None:intergenic |
| CAGGTACTATCATTCGAACC+CGG | 0.649356 | 5.1:-53843079 | None:intergenic |
| TATTGGTATAGAGTCTGCGA+AGG | 0.653670 | 5.1:+53843769 | MS.gene43740:CDS |
| GAAGAGGAAGAAGAATCAGA+AGG | 0.658325 | 5.1:+53843246 | MS.gene43740:CDS |
| GGCTGAGGTGACTCAGTGTG+AGG | 0.673349 | 5.1:+53842946 | MS.gene43740:CDS |
| ATAGTACCTGTGATATGGCG+TGG | 0.678671 | 5.1:+53843092 | MS.gene43740:CDS |
| CAGTGTTGTGAAAACTGGTG+AGG | 0.689827 | 5.1:+53842838 | MS.gene43740:CDS |
| TTACGGGACAAGGTTGACGA+AGG | 0.696825 | 5.1:+53843991 | MS.gene43740:CDS |
| GTACCTGTGATATGGCGTGG+AGG | 0.742102 | 5.1:+53843095 | MS.gene43740:CDS |
| AGGTTGAGAGAAGTGCATCG+GGG | 0.747201 | 5.1:-53843969 | None:intergenic |
| TTTCCGACTCAACTACAGGG+AGG | 0.771122 | 5.1:-53843345 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTCATTTTTATAAATTT+GGG | + | chr5.1:53843047-53843066 | MS.gene43740:CDS | 10.0% |
| !!! | GATGTTCATTTTTATAAATT+TGG | + | chr5.1:53843046-53843065 | MS.gene43740:CDS | 15.0% |
| ! | AATGTTGTAATCTTAGTTGA+AGG | - | chr5.1:53842779-53842798 | None:intergenic | 25.0% |
| ! | ATCATCAAATGAAAAACTTC+AGG | - | chr5.1:53843001-53843020 | None:intergenic | 25.0% |
| ! | ATTTAGTCAAGGTAAATACT+TGG | + | chr5.1:53843372-53843391 | MS.gene43740:CDS | 25.0% |
| ! | TCATCAAATGAAAAACTTCA+GGG | - | chr5.1:53843000-53843019 | None:intergenic | 25.0% |
| !!! | AAGTTTTTCATTTGATGATG+AGG | + | chr5.1:53843002-53843021 | MS.gene43740:CDS | 25.0% |
| !!! | AGTTTTTCATTTGATGATGA+GGG | + | chr5.1:53843003-53843022 | MS.gene43740:CDS | 25.0% |
| !!! | TGTTTTTCAGTGTTTGTTAT+TGG | + | chr5.1:53842695-53842714 | MS.gene43740:CDS | 25.0% |
| AAAACAAACATTCCCAATCA+TGG | - | chr5.1:53842681-53842700 | None:intergenic | 30.0% | |
| AATAGCTTCAAGGTTAAACT+GGG | + | chr5.1:53843867-53843886 | MS.gene43740:CDS | 30.0% | |
| ACTCTATACCAATAGTTATC+AGG | - | chr5.1:53843763-53843782 | None:intergenic | 30.0% | |
| AGGTAAATACTTGGTTTATG+TGG | + | chr5.1:53843381-53843400 | MS.gene43740:CDS | 30.0% | |
| ATCAGACTTAAAAGTAGCAT+TGG | - | chr5.1:53842816-53842835 | None:intergenic | 30.0% | |
| ATGTAACCATCAAATTCTAC+TGG | - | chr5.1:53844171-53844190 | None:intergenic | 30.0% | |
| CAAAAACACTTCTGTATCAA+TGG | - | chr5.1:53844202-53844221 | None:intergenic | 30.0% | |
| GAATTTAGGTCAGAATACTA+TGG | + | chr5.1:53842655-53842674 | MS.gene43740:CDS | 30.0% | |
| GAGACAACAAAACTCAATAA+CGG | + | chr5.1:53844141-53844160 | MS.gene43740:CDS | 30.0% | |
| GCTTTAATCATGAGAAAGTT+TGG | + | chr5.1:53843727-53843746 | MS.gene43740:CDS | 30.0% | |
| GGTAAATACTTGGTTTATGT+GGG | + | chr5.1:53843382-53843401 | MS.gene43740:CDS | 30.0% | |
| TCAAATCCATAACCAATGTT+CGG | - | chr5.1:53843486-53843505 | None:intergenic | 30.0% | |
| TTAGTTGAAGGATGAAACAA+AGG | - | chr5.1:53842767-53842786 | None:intergenic | 30.0% | |
| TTCACATCCATAAGTTTCAT+TGG | - | chr5.1:53843703-53843722 | None:intergenic | 30.0% | |
| ! | ACGTTTAGTGTTGTTAGTAT+GGG | + | chr5.1:53843196-53843215 | MS.gene43740:CDS | 30.0% |
| ! | CGTTTTATAAGGATTATAGG+AGG | + | chr5.1:53843146-53843165 | MS.gene43740:CDS | 30.0% |
| ! | TACGTTTAGTGTTGTTAGTA+TGG | + | chr5.1:53843195-53843214 | MS.gene43740:CDS | 30.0% |
| ! | TCATTTTCTCAACGAGTATA+AGG | + | chr5.1:53844086-53844105 | MS.gene43740:CDS | 30.0% |
| !! | CTTTGATTTTGAGCATTTGA+AGG | + | chr5.1:53843573-53843592 | MS.gene43740:CDS | 30.0% |
| !! | TATGACTGATGTTGATAACT+CGG | + | chr5.1:53842904-53842923 | MS.gene43740:CDS | 30.0% |
| !!! | AGTGTTTGTTATTGGTGTTT+TGG | + | chr5.1:53842703-53842722 | MS.gene43740:CDS | 30.0% |
| !!! | GTTATTGAGTTTTGTTGTCT+CGG | - | chr5.1:53844142-53844161 | None:intergenic | 30.0% |
| !!! | TGTTTTGGTTTTCACTATCA+TGG | + | chr5.1:53842718-53842737 | MS.gene43740:CDS | 30.0% |
| AAAGCATGAATCACTTCTTG+TGG | + | chr5.1:53843422-53843441 | MS.gene43740:CDS | 35.0% | |
| AAATACTTGGTTTATGTGGG+TGG | + | chr5.1:53843385-53843404 | MS.gene43740:CDS | 35.0% | |
| AATTTACACTTCATCGAAGC+AGG | + | chr5.1:53843522-53843541 | MS.gene43740:CDS | 35.0% | |
| AGAATACTATGGCCATGATT+GGG | + | chr5.1:53842666-53842685 | MS.gene43740:CDS | 35.0% | |
| AGACAGAATCTGTTGTTCAA+AGG | + | chr5.1:53843794-53843813 | MS.gene43740:CDS | 35.0% | |
| AGTAAGTGGCAACAAAAAGA+TGG | + | chr5.1:53843640-53843659 | MS.gene43740:CDS | 35.0% | |
| ATCTTTCTTTGATCCTCTGA+AGG | + | chr5.1:53844050-53844069 | MS.gene43740:CDS | 35.0% | |
| CAACGAGTATAAGGAACTTT+GGG | + | chr5.1:53844095-53844114 | MS.gene43740:CDS | 35.0% | |
| CAATAGCTTCAAGGTTAAAC+TGG | + | chr5.1:53843866-53843885 | MS.gene43740:CDS | 35.0% | |
| GAATGATAGTACCTGTGATA+TGG | + | chr5.1:53843087-53843106 | MS.gene43740:CDS | 35.0% | |
| GATAACAGTGTTGTGAAAAC+TGG | + | chr5.1:53842833-53842852 | MS.gene43740:CDS | 35.0% | |
| GATTTCCATATCAAATGCCA+TGG | - | chr5.1:53843820-53843839 | None:intergenic | 35.0% | |
| GTAAGTGGCAACAAAAAGAT+GGG | + | chr5.1:53843641-53843660 | MS.gene43740:CDS | 35.0% | |
| GTATTCTGACCTAAATTCTC+TGG | - | chr5.1:53842653-53842672 | None:intergenic | 35.0% | |
| GTTCATTTGTAGCAATGTAG+AGG | - | chr5.1:53844023-53844042 | None:intergenic | 35.0% | |
| GTTGAATACTTATCCTTCAG+AGG | - | chr5.1:53844066-53844085 | None:intergenic | 35.0% | |
| TAAATTTGGGAAACCTGTTC+CGG | + | chr5.1:53843060-53843079 | MS.gene43740:CDS | 35.0% | |
| TCAACGAGTATAAGGAACTT+TGG | + | chr5.1:53844094-53844113 | MS.gene43740:CDS | 35.0% | |
| TCAGGGTTCTTACAATCAAT+AGG | - | chr5.1:53842983-53843002 | None:intergenic | 35.0% | |
| TCGGAAAGTTCATTTAGTCA+AGG | + | chr5.1:53843361-53843380 | MS.gene43740:CDS | 35.0% | |
| TTCACAAATTCTCCAACAAC+CGG | - | chr5.1:53843319-53843338 | None:intergenic | 35.0% | |
| ! | ATGAGGAAGGCAAAGATTTT+AGG | + | chr5.1:53843545-53843564 | MS.gene43740:CDS | 35.0% |
| ! | CGGCGTTTTATAAGGATTAT+AGG | + | chr5.1:53843143-53843162 | MS.gene43740:CDS | 35.0% |
| ! | CGTTTAGTGTTGTTAGTATG+GGG | + | chr5.1:53843197-53843216 | MS.gene43740:CDS | 35.0% |
| ! | GAAAACTGGTGAGGATTTTA+TGG | + | chr5.1:53842847-53842866 | MS.gene43740:CDS | 35.0% |
| ! | GTTTAGTGTTGTTAGTATGG+GGG | + | chr5.1:53843198-53843217 | MS.gene43740:CDS | 35.0% |
| ! | TGATTTTGAGCATTTGAAGG+AGG | + | chr5.1:53843576-53843595 | MS.gene43740:CDS | 35.0% |
| !!! | GATACAGAAGTGTTTTTGAG+AGG | + | chr5.1:53844204-53844223 | MS.gene43740:CDS | 35.0% |
| AAAGGCCATGGCATTTGATA+TGG | + | chr5.1:53843812-53843831 | MS.gene43740:CDS | 40.0% | |
| AAATTTGGGAAACCTGTTCC+GGG | + | chr5.1:53843061-53843080 | MS.gene43740:CDS | 40.0% | |
| AACTTTCCGACTCAACTACA+GGG | - | chr5.1:53843351-53843370 | None:intergenic | 40.0% | |
| AATCTGTTGTTCAAAGGCCA+TGG | + | chr5.1:53843800-53843819 | MS.gene43740:CDS | 40.0% | |
| ACTCAGTTCATGTTGTGAGA+GGG | + | chr5.1:53843896-53843915 | MS.gene43740:CDS | 40.0% | |
| AGATGGGATGAATCTTCATC+TGG | + | chr5.1:53843657-53843676 | MS.gene43740:CDS | 40.0% | |
| AGTATGGGGGATTATCATAC+TGG | + | chr5.1:53843211-53843230 | MS.gene43740:CDS | 40.0% | |
| ATCATACTGGTATGAATGCG+AGG | + | chr5.1:53843224-53843243 | MS.gene43740:CDS | 40.0% | |
| ATGCACTTCTCTCAACCTTA+CGG | + | chr5.1:53843974-53843993 | MS.gene43740:CDS | 40.0% | |
| ATGTCGAGCCTGATAACTAT+TGG | + | chr5.1:53843752-53843771 | MS.gene43740:CDS | 40.0% | |
| CAGAATACTATGGCCATGAT+TGG | + | chr5.1:53842665-53842684 | MS.gene43740:CDS | 40.0% | |
| CCATAACCAATGTTCGGTTT+AGG | - | chr5.1:53843480-53843499 | None:intergenic | 40.0% | |
| GAAGAGGAAGAAGAATCAGA+AGG | + | chr5.1:53843246-53843265 | MS.gene43740:CDS | 40.0% | |
| GAGGTATGTGCATCAAGATT+TGG | - | chr5.1:53843949-53843968 | None:intergenic | 40.0% | |
| GCTACTAATGAGTCTGTGTT+TGG | + | chr5.1:53842869-53842888 | MS.gene43740:CDS | 40.0% | |
| GGATCAAAGAAAGATGCATC+AGG | - | chr5.1:53844045-53844064 | None:intergenic | 40.0% | |
| GGATGAAACAAAGGATCTTC+AGG | - | chr5.1:53842758-53842777 | None:intergenic | 40.0% | |
| GGCATTTGATATGGAAATCG+AGG | + | chr5.1:53843821-53843840 | MS.gene43740:CDS | 40.0% | |
| GGTCACACCAATGAAACTTA+TGG | + | chr5.1:53843693-53843712 | MS.gene43740:CDS | 40.0% | |
| GGTTTCAGACCAGAGAATTT+AGG | + | chr5.1:53842641-53842660 | MS.gene43740:CDS | 40.0% | |
| TAGTGTCTGCAATAGCTTCA+AGG | + | chr5.1:53843857-53843876 | MS.gene43740:CDS | 40.0% | |
| TATTGGTATAGAGTCTGCGA+AGG | + | chr5.1:53843769-53843788 | MS.gene43740:CDS | 40.0% | |
| TCAGTACCTAAACCGAACAT+TGG | + | chr5.1:53843471-53843490 | MS.gene43740:CDS | 40.0% | |
| TGATTTGACCAGTGATTGCA+AGG | + | chr5.1:53844251-53844270 | MS.gene43740:CDS | 40.0% | |
| ! | CCTAAACCGAACATTGGTTA+TGG | + | chr5.1:53843477-53843496 | MS.gene43740:CDS | 40.0% |
| ! | GTTGGACAAGGATCAGTTTT+GGG | + | chr5.1:53843609-53843628 | MS.gene43740:CDS | 40.0% |
| ! | TAAGGTTGAGAGAAGTGCAT+CGG | - | chr5.1:53843974-53843993 | None:intergenic | 40.0% |
| ! | TGTTGGACAAGGATCAGTTT+TGG | + | chr5.1:53843608-53843627 | MS.gene43740:CDS | 40.0% |
| ! | TTTGGGATGAGACTAGTGAA+TGG | + | chr5.1:53844112-53844131 | MS.gene43740:CDS | 40.0% |
| ! | TTTTGAGCATTTGAAGGAGG+CGG | + | chr5.1:53843579-53843598 | MS.gene43740:CDS | 40.0% |
| !! | GATGTTGATAACTCGGTTAG+CGG | + | chr5.1:53842911-53842930 | MS.gene43740:CDS | 40.0% |
| AGAGAAGACATCGTCGAATC+TGG | + | chr5.1:53843276-53843295 | MS.gene43740:CDS | 45.0% | |
| AGGAAGAAGAATCAGAAGGC+TGG | + | chr5.1:53843250-53843269 | MS.gene43740:CDS | 45.0% | |
| ATAGTACCTGTGATATGGCG+TGG | + | chr5.1:53843092-53843111 | MS.gene43740:CDS | 45.0% | |
| ATGGAAATCGAGGCGATTGA+TGG | + | chr5.1:53843831-53843850 | MS.gene43740:CDS | 45.0% | |
| CAGGTACTATCATTCGAACC+CGG | - | chr5.1:53843082-53843101 | None:intergenic | 45.0% | |
| CAGTGTTGTGAAAACTGGTG+AGG | + | chr5.1:53842838-53842857 | MS.gene43740:CDS | 45.0% | |
| CTCAGTTCATGTTGTGAGAG+GGG | + | chr5.1:53843897-53843916 | MS.gene43740:CDS | 45.0% | |
| GAACTTTCCGACTCAACTAC+AGG | - | chr5.1:53843352-53843371 | None:intergenic | 45.0% | |
| GACTCAGTTCATGTTGTGAG+AGG | + | chr5.1:53843895-53843914 | MS.gene43740:CDS | 45.0% | |
| GATACCATCCTTGCAATCAC+TGG | - | chr5.1:53844262-53844281 | None:intergenic | 45.0% | |
| GATGAATCTTCATCTGGTCG+AGG | + | chr5.1:53843663-53843682 | MS.gene43740:CDS | 45.0% | |
| GGCGTTCCAGTAGAATTTGA+TGG | + | chr5.1:53844162-53844181 | MS.gene43740:CDS | 45.0% | |
| TACTTGGTTTATGTGGGTGG+TGG | + | chr5.1:53843388-53843407 | MS.gene43740:CDS | 45.0% | |
| TCATCTGGTCGAGGATTACA+GGG | + | chr5.1:53843672-53843691 | MS.gene43740:CDS | 45.0% | |
| TCATGTTGTGAGAGGGGAAA+AGG | + | chr5.1:53843903-53843922 | MS.gene43740:CDS | 45.0% | |
| TGCACTTCTCTCAACCTTAC+GGG | + | chr5.1:53843975-53843994 | MS.gene43740:CDS | 45.0% | |
| TGGAGTTTCTTGTGTGCTCT+AGG | + | chr5.1:53843442-53843461 | MS.gene43740:CDS | 45.0% | |
| TTCATCTGGTCGAGGATTAC+AGG | + | chr5.1:53843671-53843690 | MS.gene43740:CDS | 45.0% | |
| TTGACCAGTGATTGCAAGGA+TGG | + | chr5.1:53844255-53844274 | MS.gene43740:CDS | 45.0% | |
| TTTGGGCAGATTGGAGTAAG+TGG | + | chr5.1:53843626-53843645 | MS.gene43740:CDS | 45.0% | |
| ! | AAGGTTGAGAGAAGTGCATC+GGG | - | chr5.1:53843973-53843992 | None:intergenic | 45.0% |
| ! | TCTGCATTTTCTAGACCTGG+AGG | + | chr5.1:53842620-53842639 | MS.gene43740:CDS | 45.0% |
| !! | TTTATGTGGGTGGTGGAGAT+AGG | + | chr5.1:53843395-53843414 | MS.gene43740:CDS | 45.0% |
| !!! | AGGATCAGTTTTGGGCAGAT+TGG | + | chr5.1:53843617-53843636 | MS.gene43740:CDS | 45.0% |
| ACTCAGTGTGAGGGGAATTC+AGG | + | chr5.1:53842956-53842975 | MS.gene43740:CDS | 50.0% | |
| AGGCGAGGAACAAAGAGCTT+TGG | + | chr5.1:53843923-53843942 | MS.gene43740:CDS | 50.0% | |
| ATACCTCCACGCCATATCAC+AGG | - | chr5.1:53843101-53843120 | None:intergenic | 50.0% | |
| CACTTCATCGAAGCAGGATG+AGG | + | chr5.1:53843528-53843547 | MS.gene43740:CDS | 50.0% | |
| CTATCATTCGAACCCGGAAC+AGG | - | chr5.1:53843076-53843095 | None:intergenic | 50.0% | |
| CTGGTATGAATGCGAGGAAG+AGG | + | chr5.1:53843230-53843249 | MS.gene43740:CDS | 50.0% | |
| GACATCGTCGAATCTGGATC+AGG | + | chr5.1:53843282-53843301 | MS.gene43740:CDS | 50.0% | |
| GGTTAGCGGTGAGACTAATG+AGG | + | chr5.1:53842925-53842944 | MS.gene43740:CDS | 50.0% | |
| TCATCGAAGCAGGATGAGGA+AGG | + | chr5.1:53843532-53843551 | MS.gene43740:CDS | 50.0% | |
| TCTCTCAACCTTACGGGACA+AGG | + | chr5.1:53843981-53844000 | MS.gene43740:CDS | 50.0% | |
| TTACGGGACAAGGTTGACGA+AGG | + | chr5.1:53843991-53844010 | MS.gene43740:CDS | 50.0% | |
| TTCGTCAACCTTGTCCCGTA+AGG | - | chr5.1:53843992-53844011 | None:intergenic | 50.0% | |
| TTTCCGACTCAACTACAGGG+AGG | - | chr5.1:53843348-53843367 | None:intergenic | 50.0% | |
| ! | AGGTTGAGAGAAGTGCATCG+GGG | - | chr5.1:53843972-53843991 | None:intergenic | 50.0% |
| ! | CGGTCTGCATTTTCTAGACC+TGG | + | chr5.1:53842617-53842636 | MS.gene43740:CDS | 50.0% |
| ! | GAAGGCTGCGGCGTTTTATA+AGG | + | chr5.1:53843135-53843154 | MS.gene43740:CDS | 50.0% |
| ! | GTGATATGGCGTGGAGGTAT+AGG | + | chr5.1:53843101-53843120 | MS.gene43740:CDS | 50.0% |
| ! | TTCTCTGGTCTGAAACCTCC+AGG | - | chr5.1:53842638-53842657 | None:intergenic | 50.0% |
| CAGCCTCCCTGTAGTTGAGT+CGG | + | chr5.1:53843342-53843361 | MS.gene43740:CDS | 55.0% | |
| CGGTGAGACTAATGAGGCTG+AGG | + | chr5.1:53842931-53842950 | MS.gene43740:CDS | 55.0% | |
| CTGAGGTGACTCAGTGTGAG+GGG | + | chr5.1:53842948-53842967 | MS.gene43740:CDS | 55.0% | |
| GCTGAGGTGACTCAGTGTGA+GGG | + | chr5.1:53842947-53842966 | MS.gene43740:CDS | 55.0% | |
| GGATCAGGTCAATGCGTTGC+CGG | + | chr5.1:53843297-53843316 | MS.gene43740:CDS | 55.0% | |
| GTACCTGTGATATGGCGTGG+AGG | + | chr5.1:53843095-53843114 | MS.gene43740:CDS | 55.0% | |
| GTATAGGCCGAAGGATGGGA+AGG | + | chr5.1:53843117-53843136 | MS.gene43740:CDS | 55.0% | |
| TTGTGAGAGGGGAAAAGGCG+AGG | + | chr5.1:53843908-53843927 | MS.gene43740:CDS | 55.0% | |
| ! | GGAGGTATAGGCCGAAGGAT+GGG | + | chr5.1:53843113-53843132 | MS.gene43740:CDS | 55.0% |
| ! | GGTTGAGAGAAGTGCATCGG+GGG | - | chr5.1:53843971-53843990 | None:intergenic | 55.0% |
| ! | GTCAATGCGTTGCCGGTTGT+TGG | + | chr5.1:53843304-53843323 | MS.gene43740:CDS | 55.0% |
| ! | TGGAGGTATAGGCCGAAGGA+TGG | + | chr5.1:53843112-53843131 | MS.gene43740:CDS | 55.0% |
| GGCTGAGGTGACTCAGTGTG+AGG | + | chr5.1:53842946-53842965 | MS.gene43740:CDS | 60.0% | |
| ! | TGAGAGAAGTGCATCGGGGG+AGG | - | chr5.1:53843968-53843987 | None:intergenic | 60.0% |
| GAAGGAGGCGGCGTCTGTGT+TGG | + | chr5.1:53843591-53843610 | MS.gene43740:CDS | 65.0% | |
| GCCGAAGGATGGGAAGGCTG+CGG | + | chr5.1:53843123-53843142 | MS.gene43740:CDS | 65.0% | |
| GCCGCAGCCTTCCCATCCTT+CGG | - | chr5.1:53843127-53843146 | None:intergenic | 65.0% | |
| GGCGGCGTCTGTGTTGGACA+AGG | + | chr5.1:53843597-53843616 | MS.gene43740:CDS | 65.0% | |
| ! | GGCGTGGAGGTATAGGCCGA+AGG | + | chr5.1:53843108-53843127 | MS.gene43740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 53842608 | 53844308 | 53842608 | ID=MS.gene43740 |
| chr5.1 | mRNA | 53842608 | 53844308 | 53842608 | ID=MS.gene43740.t1;Parent=MS.gene43740 |
| chr5.1 | exon | 53842608 | 53844308 | 53842608 | ID=MS.gene43740.t1.exon1;Parent=MS.gene43740.t1 |
| chr5.1 | CDS | 53842608 | 53844308 | 53842608 | ID=cds.MS.gene43740.t1;Parent=MS.gene43740.t1 |
| Gene Sequence |
| Protein sequence |
