AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02358

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02358.t1 MTR_2g023880 99.479 192 1 0 1 192 31 222 1.02e-137 384
MS.gene02358.t1 MTR_4g049540 60.733 191 74 1 1 191 31 220 3.37e-82 243
MS.gene02358.t1 MTR_2g088060 49.738 191 95 1 1 191 31 220 5.10e-55 174
MS.gene02358.t1 MTR_7g056133 43.094 181 95 2 2 175 33 212 8.45e-41 137
MS.gene02358.t1 MTR_5g093360 55.882 68 29 1 2 69 32 98 2.00e-22 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02358.t1 AT5G42570 62.570 179 66 1 1 179 31 208 7.44e-79 234
MS.gene02358.t1 AT1G11905 60.556 180 70 1 1 180 31 209 7.72e-74 222
MS.gene02358.t1 AT1G11905 56.111 180 77 2 1 180 31 208 5.32e-62 192
MS.gene02358.t1 AT5G48660 39.560 182 102 2 2 176 33 213 1.53e-34 122
MS.gene02358.t1 AT3G07190 39.011 182 103 2 2 176 33 213 5.26e-33 117
MS.gene02358.t1 AT3G20450 52.475 101 47 1 3 102 37 137 1.84e-28 103
MS.gene02358.t1 AT5G48660 37.226 137 79 1 47 176 1 137 9.03e-20 81.6

Find 43 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTCACATATTCTTCT+TGG 0.219887 2.4:+63451645 None:intergenic
TCCTACCGATCAGGTTCTTA+TGG 0.252341 2.4:-63454012 MS.gene02358:CDS
GTAGCTGGTTGCGGAGGTTT+TGG 0.307160 2.4:+63451701 None:intergenic
CTATCATAAGTGCAAGAAAA+AGG 0.327998 2.4:+63452004 None:intergenic
GGGGCTGAGGATGCGAAAGC+TGG 0.347270 2.4:-63451907 MS.gene02358:CDS
GAAGCTTGTAATAATGGCTT+TGG 0.364769 2.4:-63454168 None:intergenic
CCATGCTCTTTCTCCGAATC+CGG 0.367578 2.4:+63451953 None:intergenic
AAGCCAGTGTAAGTGCTCTA+AGG 0.421670 2.4:-63451774 MS.gene02358:CDS
TTCTGTTAATCCTACCGATC+AGG 0.442382 2.4:-63454021 MS.gene02358:CDS
ACAGACTGCATCATTACATA+AGG 0.453424 2.4:-63451981 MS.gene02358:CDS
ACATAAGGGAACTCCGGATT+CGG 0.458900 2.4:-63451966 MS.gene02358:CDS
ACGAGGTCGTGGACCTGTTA+TGG 0.464283 2.4:-63454135 MS.gene02358:CDS
TTCTGTCAACAGATTGTAGC+TGG 0.470135 2.4:+63451686 None:intergenic
GAGAGCAGAAGTTGATCGTC+TGG 0.490422 2.4:-63451839 MS.gene02358:CDS
CAACAGATTGTAGCTGGTTG+CGG 0.507849 2.4:+63451692 None:intergenic
GTTATGGTGAAAACCGTTGC+TGG 0.514910 2.4:-63454119 MS.gene02358:CDS
TTCAGATGAAACTAAAACAA+TGG 0.522908 2.4:-63451881 MS.gene02358:CDS
GATCGGTTGAAACGAGGTCG+TGG 0.523142 2.4:-63454146 MS.gene02358:CDS
ACTTCAGTCAAAAGATAAAG+AGG 0.526615 2.4:-63451809 MS.gene02358:CDS
CAACAACGTGGGATCGAAGA+TGG 0.533524 2.4:-63454047 MS.gene02358:CDS
TGAATATGATCGCTTACTTG+AGG 0.542275 2.4:-63451728 MS.gene02358:CDS
TTGTAATAATGGCTTTGGAT+CGG 0.542465 2.4:-63454163 None:intergenic
AGCTGTTAAGAAACAAATGC+GGG 0.550293 2.4:-63451929 MS.gene02358:CDS
TCTTCTTGAAGCTACACTCA+TGG 0.550488 2.4:-63453982 MS.gene02358:CDS
CAGACTGCATCATTACATAA+GGG 0.555282 2.4:-63451980 MS.gene02358:CDS
CTTCTTGAAGCTACACTCAT+GGG 0.557141 2.4:-63453981 MS.gene02358:intron
CAGATTGTAGCTGGTTGCGG+AGG 0.567147 2.4:+63451695 None:intergenic
GCTCTAAGGAAACAATCTGA+AGG 0.569864 2.4:-63451760 MS.gene02358:CDS
ATCATTACATAAGGGAACTC+CGG 0.575747 2.4:-63451972 MS.gene02358:CDS
GCCATAAGAACCTGATCGGT+AGG 0.586898 2.4:+63454011 None:intergenic
CTCTAAGGAAACAATCTGAA+GGG 0.587548 2.4:-63451759 MS.gene02358:CDS
CAGTCAAAAGATAAAGAGGT+AGG 0.596716 2.4:-63451805 MS.gene02358:CDS
CCGGATTCGGAGAAAGAGCA+TGG 0.597596 2.4:-63451953 MS.gene02358:CDS
GCTTTGGATCGGTTGAAACG+AGG 0.607033 2.4:-63454152 MS.gene02358:CDS
TTTCCTTAGAGCACTTACAC+TGG 0.609208 2.4:+63451771 None:intergenic
CTTAGCCATAAGAACCTGAT+CGG 0.613122 2.4:+63454007 None:intergenic
AACAAGAACAGTACCAGCAA+CGG 0.621936 2.4:+63454106 None:intergenic
CTGTTAAGAAACAAATGCGG+GGG 0.642686 2.4:-63451927 MS.gene02358:CDS
TGATGAAGATTCAACAACGT+GGG 0.655476 2.4:-63454058 MS.gene02358:CDS
GCTGTTAAGAAACAAATGCG+GGG 0.673517 2.4:-63451928 MS.gene02358:CDS
AAGCTGTTAAGAAACAAATG+CGG 0.709469 2.4:-63451930 MS.gene02358:CDS
TGTTAAGAAACAAATGCGGG+GGG 0.715839 2.4:-63451926 MS.gene02358:CDS
ATGATGAAGATTCAACAACG+TGG 0.740230 2.4:-63454059 MS.gene02358:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAATATGAAATAAAA+GGG + chr2.4:63452763-63452782 None:intergenic 10.0%
!! TATTCATAATATGAAATAAA+AGG + chr2.4:63452764-63452783 None:intergenic 10.0%
!! TTTAATAAGTCTAAATATTA+AGG + chr2.4:63453722-63453741 None:intergenic 10.0%
!! TATAGTATTAAACTTATTAG+TGG - chr2.4:63452844-63452863 MS.gene02358:intron 15.0%
!!! TTGAATTTGATTTATGTTTA+TGG - chr2.4:63451929-63451948 MS.gene02358:CDS 15.0%
!!! TTTTACTAGTTGTATATAAT+TGG - chr2.4:63452712-63452731 MS.gene02358:intron 15.0%
!!! TTTTGTAAATATGATCAAAT+AGG - chr2.4:63452028-63452047 MS.gene02358:intron 15.0%
!! AATCATAAGATATATGCATA+TGG + chr2.4:63453082-63453101 None:intergenic 20.0%
!! ATTGTTTATTGATGAGTTAT+TGG - chr2.4:63453416-63453435 MS.gene02358:intron 20.0%
!! TTCTAAACCATTGAAAAAAT+CGG + chr2.4:63453310-63453329 None:intergenic 20.0%
!! TTGATTTATGTTTATGGATT+TGG - chr2.4:63451935-63451954 MS.gene02358:CDS 20.0%
!!! AGTATTTCTTTTGAATAGTA+TGG - chr2.4:63452819-63452838 MS.gene02358:intron 20.0%
!!! ATGGGTATGTTTTTTTTAAA+TGG - chr2.4:63451843-63451862 MS.gene02358:CDS 20.0%
!!! ATTTTGCTTATAATTAAGAC+TGG - chr2.4:63452072-63452091 MS.gene02358:intron 20.0%
!!! CTATATGATTTGCAATTTTT+AGG - chr2.4:63453471-63453490 MS.gene02358:intron 20.0%
!!! GTTATTGTTTTACTATTGAT+AGG + chr2.4:63452692-63452711 None:intergenic 20.0%
!!! TCTTTGATTTTTAATAAGAC+CGG - chr2.4:63453608-63453627 MS.gene02358:intron 20.0%
!!! TGGGTATGTTTTTTTTAAAT+GGG - chr2.4:63451844-63451863 MS.gene02358:CDS 20.0%
! AACATATTCATCACAATGTA+AGG + chr2.4:63452371-63452390 None:intergenic 25.0%
! AAGTTTAACAACATACTAGA+TGG + chr2.4:63453520-63453539 None:intergenic 25.0%
! ACTACATTAATGAAAGGAAA+AGG + chr2.4:63452345-63452364 None:intergenic 25.0%
! CTACATTAATGAAAGGAAAA+GGG + chr2.4:63452344-63452363 None:intergenic 25.0%
! TTATTAAAAGATATCCTCTG+TGG - chr2.4:63453734-63453753 MS.gene02358:intron 25.0%
! TTCAGATGAAACTAAAACAA+TGG - chr2.4:63453925-63453944 MS.gene02358:intron 25.0%
! TTTGGAAATATGTTGAACTT+AGG + chr2.4:63453567-63453586 None:intergenic 25.0%
!! AATCATTGTGATTCTTTTTC+AGG + chr2.4:63453028-63453047 None:intergenic 25.0%
!! GAATGAATGAATTTTGTATG+AGG - chr2.4:63451904-63451923 MS.gene02358:CDS 25.0%
!!! CAGCAATGTTTTGAAAAATT+TGG + chr2.4:63453585-63453604 None:intergenic 25.0%
!!! GAAGTTTTGAGTAATGTTTA+AGG - chr2.4:63452790-63452809 MS.gene02358:intron 25.0%
AAGCTGTTAAGAAACAAATG+CGG - chr2.4:63453876-63453895 MS.gene02358:intron 30.0%
AAGTTGAAAAATGTGAGCTT+TGG - chr2.4:63453370-63453389 MS.gene02358:intron 30.0%
ACAATGATTCAGCATTCATA+AGG - chr2.4:63453039-63453058 MS.gene02358:intron 30.0%
ACTTCAGTCAAAAGATAAAG+AGG - chr2.4:63453997-63454016 MS.gene02358:CDS 30.0%
AGATCTTCTCAATTTCCAAA+AGG + chr2.4:63452277-63452296 None:intergenic 30.0%
AGGTTGACTACATTAATGAA+AGG + chr2.4:63452351-63452370 None:intergenic 30.0%
ATTCTTGGTCAATTATTTGC+AGG - chr2.4:63453773-63453792 MS.gene02358:intron 30.0%
CAGTATTGTTTATGTTGGAT+TGG + chr2.4:63453677-63453696 None:intergenic 30.0%
CTATCATAAGTGCAAGAAAA+AGG + chr2.4:63453805-63453824 None:intergenic 30.0%
CTCAACAGTATTGTTTATGT+TGG + chr2.4:63453682-63453701 None:intergenic 30.0%
GAATAACCCAACAAAGAATT+AGG + chr2.4:63453260-63453279 None:intergenic 30.0%
GTTTATTGATGAGTTATTGG+TGG - chr2.4:63453419-63453438 MS.gene02358:intron 30.0%
TGCTTATAATTAAGACTGGA+CGG - chr2.4:63452076-63452095 MS.gene02358:intron 30.0%
TGTTTGCCTAATTCTTTGTT+GGG - chr2.4:63453251-63453270 MS.gene02358:intron 30.0%
TTAAAACAACATAGCTGAAG+AGG - chr2.4:63453638-63453657 MS.gene02358:intron 30.0%
TTGTTTGCCTAATTCTTTGT+TGG - chr2.4:63453250-63453269 MS.gene02358:intron 30.0%
! ATGGTTTAGAATGAATGTTG+AGG - chr2.4:63453319-63453338 MS.gene02358:intron 30.0%
! TGATCAATCACAAAACCTTT+TGG - chr2.4:63452259-63452278 MS.gene02358:intron 30.0%
!! ACATTTGTAAGAGTGTTGTA+CGG - chr2.4:63452193-63452212 MS.gene02358:intron 30.0%
!!! ATGTTGTTTTAAGATGTGAC+CGG + chr2.4:63453630-63453649 None:intergenic 30.0%
!!! GATTCTTTTTCAGGAAAACA+CGG + chr2.4:63453019-63453038 None:intergenic 30.0%
!!! TTTGCTACCGATTTTTTCAA+TGG - chr2.4:63453300-63453319 MS.gene02358:intron 30.0%
AAGAACCATTCGAGAATTGA+AGG + chr2.4:63452485-63452504 None:intergenic 35.0%
AATACAAGTTCACGAGGTAT+AGG + chr2.4:63452991-63453010 None:intergenic 35.0%
AATGTTGAGGCAACTTACAT+GGG - chr2.4:63453332-63453351 MS.gene02358:intron 35.0%
ACAGACTGCATCATTACATA+AGG - chr2.4:63453825-63453844 MS.gene02358:intron 35.0%
ACTCCGAAAGATCAGAAAAT+GGG + chr2.4:63452315-63452334 None:intergenic 35.0%
AGCTGTTAAGAAACAAATGC+GGG - chr2.4:63453877-63453896 MS.gene02358:intron 35.0%
ATCATTACATAAGGGAACTC+CGG - chr2.4:63453834-63453853 MS.gene02358:intron 35.0%
ATGATGAAGATTCAACAACG+TGG - chr2.4:63451747-63451766 MS.gene02358:CDS 35.0%
CAGACTGCATCATTACATAA+GGG - chr2.4:63453826-63453845 MS.gene02358:intron 35.0%
CAGTCAAAAGATAAAGAGGT+AGG - chr2.4:63454001-63454020 MS.gene02358:CDS 35.0%
CTGTTGTCAATGCAGAAATA+CGG + chr2.4:63452905-63452924 None:intergenic 35.0%
GAGAATGTTCTACTTTCTTG+TGG - chr2.4:63453392-63453411 MS.gene02358:intron 35.0%
TGAATATGATCGCTTACTTG+AGG - chr2.4:63454078-63454097 MS.gene02358:CDS 35.0%
TGATGAAGATTCAACAACGT+GGG - chr2.4:63451748-63451767 MS.gene02358:CDS 35.0%
TTCAGCATTCATAAGGCATA+AGG - chr2.4:63453046-63453065 MS.gene02358:intron 35.0%
TTGCGAGCATTATTCATTCT+TGG - chr2.4:63453758-63453777 MS.gene02358:intron 35.0%
! CTCTAAGGAAACAATCTGAA+GGG - chr2.4:63454047-63454066 MS.gene02358:CDS 35.0%
! GAACCCATTTTCTGATCTTT+CGG - chr2.4:63452309-63452328 MS.gene02358:intron 35.0%
! GTCATATCTAGTTTCCGTAT+CGG + chr2.4:63452123-63452142 None:intergenic 35.0%
!!! TGGTATTTTAGCCTCCTAAT+GGG - chr2.4:63453152-63453171 MS.gene02358:intron 35.0%
!!! TTGGTATTTTAGCCTCCTAA+TGG - chr2.4:63453151-63453170 MS.gene02358:intron 35.0%
AACAAGAACAGTACCAGCAA+CGG + chr2.4:63451703-63451722 None:intergenic 40.0%
AATCATATGAGCCCATTAGG+AGG + chr2.4:63453166-63453185 None:intergenic 40.0%
AATTAGGCAAACAACCAACG+AGG + chr2.4:63453244-63453263 None:intergenic 40.0%
CTGAATCATATGAGCCCATT+AGG + chr2.4:63453169-63453188 None:intergenic 40.0%
CTGTTAAGAAACAAATGCGG+GGG - chr2.4:63453879-63453898 MS.gene02358:intron 40.0%
CTTAGCCATAAGAACCTGAT+CGG + chr2.4:63451802-63451821 None:intergenic 40.0%
CTTCTTGAAGCTACACTCAT+GGG - chr2.4:63451825-63451844 MS.gene02358:CDS 40.0%
GAATGTTGAGGCAACTTACA+TGG - chr2.4:63453331-63453350 MS.gene02358:intron 40.0%
GACTCCGAAAGATCAGAAAA+TGG + chr2.4:63452316-63452335 None:intergenic 40.0%
GCTAAAATACCAAGAGTGAC+CGG + chr2.4:63453144-63453163 None:intergenic 40.0%
GCTGTTAAGAAACAAATGCG+GGG - chr2.4:63453878-63453897 MS.gene02358:intron 40.0%
GTTCGAAATACAAGTTCACG+AGG + chr2.4:63452997-63453016 None:intergenic 40.0%
GTTGTACGGATGTAATACAC+CGG - chr2.4:63452207-63452226 MS.gene02358:intron 40.0%
TCTAGAAGCTGAACCTAGAT+AGG + chr2.4:63452932-63452951 None:intergenic 40.0%
TCTTCTTGAAGCTACACTCA+TGG - chr2.4:63451824-63451843 MS.gene02358:CDS 40.0%
TGTTAAGAAACAAATGCGGG+GGG - chr2.4:63453880-63453899 MS.gene02358:intron 40.0%
TTCTGTCAACAGATTGTAGC+TGG + chr2.4:63454123-63454142 None:intergenic 40.0%
TTCTGTTAATCCTACCGATC+AGG - chr2.4:63451785-63451804 MS.gene02358:CDS 40.0%
! AGTTATTGGTGGCATTAGCA+GGG - chr2.4:63453430-63453449 MS.gene02358:intron 40.0%
! TTTCCTTAGAGCACTTACAC+TGG + chr2.4:63454038-63454057 None:intergenic 40.0%
!! GCTCTAAGGAAACAATCTGA+AGG - chr2.4:63454046-63454065 MS.gene02358:CDS 40.0%
AAGCCAGTGTAAGTGCTCTA+AGG - chr2.4:63454032-63454051 MS.gene02358:CDS 45.0%
ACATAAGGGAACTCCGGATT+CGG - chr2.4:63453840-63453859 MS.gene02358:intron 45.0%
CAACAGATTGTAGCTGGTTG+CGG + chr2.4:63454117-63454136 None:intergenic 45.0%
CGAAGCGTAGCAGAAAAATC+AGG - chr2.4:63452611-63452630 MS.gene02358:intron 45.0%
CTGTCCTCTGTTGTCAAAAG+CGG - chr2.4:63452570-63452589 MS.gene02358:intron 45.0%
GTCAATGCAGAAATACGGTG+TGG + chr2.4:63452900-63452919 None:intergenic 45.0%
GTTATGGTGAAAACCGTTGC+TGG - chr2.4:63451687-63451706 MS.gene02358:CDS 45.0%
TAGAAAGAGCCTTCACCCTT+AGG - chr2.4:63453114-63453133 MS.gene02358:intron 45.0%
TCCTACCGATCAGGTTCTTA+TGG - chr2.4:63451794-63451813 MS.gene02358:CDS 45.0%
TCTTGAGTTTACTGTGCCTC+CGG - chr2.4:63452501-63452520 MS.gene02358:intron 45.0%
TGACAACAGAGCTCCTATCT+AGG - chr2.4:63452916-63452935 MS.gene02358:intron 45.0%
TGTAATACACCGGTGTGTGT+TGG - chr2.4:63452217-63452236 MS.gene02358:intron 45.0%
TTAGGTAAACCGGTCACTCT+TGG - chr2.4:63453132-63453151 MS.gene02358:intron 45.0%
! AAGAGTGACCGGTTTACCTA+AGG + chr2.4:63453133-63453152 None:intergenic 45.0%
! AGAGTGACCGGTTTACCTAA+GGG + chr2.4:63453132-63453151 None:intergenic 45.0%
! GAGTTATTGGTGGCATTAGC+AGG - chr2.4:63453429-63453448 MS.gene02358:intron 45.0%
! GCAACGGTTTTCACCATAAC+AGG + chr2.4:63451687-63451706 None:intergenic 45.0%
! TCTAGTTTCCGTATCGGATC+CGG + chr2.4:63452117-63452136 None:intergenic 45.0%
! TTTTGACAACAGAGGACAGG+AGG + chr2.4:63452569-63452588 None:intergenic 45.0%
AAATACGGTGTGGCGCATAG+CGG + chr2.4:63452890-63452909 None:intergenic 50.0%
ACTTGTGAGTGAAGCCTCGT+TGG - chr2.4:63453227-63453246 MS.gene02358:intron 50.0%
AGAAGTGGAAAGCGGCAAAG+CGG - chr2.4:63452665-63452684 MS.gene02358:intron 50.0%
AGAGGCTTTGCCCTGTCAAA+CGG - chr2.4:63452540-63452559 MS.gene02358:intron 50.0%
AGTTCACGAGGTATAGGCAC+TGG + chr2.4:63452985-63453004 None:intergenic 50.0%
ATAATGCTCGCAAGCCACAG+AGG + chr2.4:63453751-63453770 None:intergenic 50.0%
CAACAACGTGGGATCGAAGA+TGG - chr2.4:63451759-63451778 MS.gene02358:CDS 50.0%
CCATGCTCTTTCTCCGAATC+CGG + chr2.4:63453856-63453875 None:intergenic 50.0%
CGGGTATCAGAAGTGGAAAG+CGG - chr2.4:63452657-63452676 MS.gene02358:intron 50.0%
GCCATAAGAACCTGATCGGT+AGG + chr2.4:63451798-63451817 None:intergenic 50.0%
GCCTTCACCCTTAGGTAAAC+CGG - chr2.4:63453122-63453141 MS.gene02358:intron 50.0%
GGCTGCCTTCAATTCTCGAA+TGG - chr2.4:63452477-63452496 MS.gene02358:intron 50.0%
TCTGCTACGCTTCGCTATAG+CGG + chr2.4:63452605-63452624 None:intergenic 50.0%
TGACACTGACACAGACACGT+TGG - chr2.4:63452139-63452158 MS.gene02358:intron 50.0%
TTGCTGCATCTGATGCAGCA+TGG - chr2.4:63452456-63452475 MS.gene02358:intron 50.0%
TTTGACAGGGCAAAGCCTCT+CGG + chr2.4:63452540-63452559 None:intergenic 50.0%
! ACCGGTTTACCTAAGGGTGA+AGG + chr2.4:63453126-63453145 None:intergenic 50.0%
! ACGGAGTATCTGTCAAGCAC+CGG - chr2.4:63452095-63452114 MS.gene02358:intron 50.0%
! CGCTTTTGACAACAGAGGAC+AGG + chr2.4:63452572-63452591 None:intergenic 50.0%
! GAGAGCAGAAGTTGATCGTC+TGG - chr2.4:63453967-63453986 MS.gene02358:intron 50.0%
! GCTTTGGATCGGTTGAAACG+AGG - chr2.4:63451654-63451673 MS.gene02358:CDS 50.0%
AAAATCAGGACCACTGCGCC+AGG - chr2.4:63452625-63452644 MS.gene02358:intron 55.0%
AATACGGTGTGGCGCATAGC+GGG + chr2.4:63452889-63452908 None:intergenic 55.0%
ACGAGGTCGTGGACCTGTTA+TGG - chr2.4:63451671-63451690 MS.gene02358:CDS 55.0%
CAGATTGTAGCTGGTTGCGG+AGG + chr2.4:63454114-63454133 None:intergenic 55.0%
CCGGATTCGGAGAAAGAGCA+TGG - chr2.4:63453853-63453872 MS.gene02358:intron 55.0%
GAGGCTTTGCCCTGTCAAAC+GGG - chr2.4:63452541-63452560 MS.gene02358:intron 55.0%
GATCGGTTGAAACGAGGTCG+TGG - chr2.4:63451660-63451679 MS.gene02358:CDS 55.0%
TCTCCGTGACCAACACACAC+CGG + chr2.4:63452229-63452248 None:intergenic 55.0%
! ACACCGGTGTGTGTTGGTCA+CGG - chr2.4:63452223-63452242 MS.gene02358:intron 55.0%
! GTAGCTGGTTGCGGAGGTTT+TGG + chr2.4:63454108-63454127 None:intergenic 55.0%
!! ACTGGAAGAGGTGCCAACAG+GGG + chr2.4:63452967-63452986 None:intergenic 55.0%
!! CACTGGAAGAGGTGCCAACA+GGG + chr2.4:63452968-63452987 None:intergenic 55.0%
!! CGAGGTATAGGCACTGGAAG+AGG + chr2.4:63452979-63452998 None:intergenic 55.0%
!! GTCAAGCACCGGATCCGATA+CGG - chr2.4:63452106-63452125 MS.gene02358:intron 55.0%
ACAGGAGGAGCCCGTTTGAC+AGG + chr2.4:63452554-63452573 None:intergenic 60.0%
ACCTCTCTCAGCTCCCCTGT+TGG - chr2.4:63452951-63452970 MS.gene02358:intron 60.0%
ACTTCTGATACCCGCCGACG+CGG + chr2.4:63452651-63452670 None:intergenic 60.0%
AGGGCAAAGCCTCTCGGACT+GGG + chr2.4:63452534-63452553 None:intergenic 60.0%
CAGGAGGAGCCCGTTTGACA+GGG + chr2.4:63452553-63452572 None:intergenic 60.0%
CTACGCTTCGCTATAGCGGC+CGG + chr2.4:63452601-63452620 None:intergenic 60.0%
GAAACAAATGCGGGGGGCTG+AGG - chr2.4:63453886-63453905 MS.gene02358:intron 60.0%
GTTGTCAAAAGCGGCCGCAC+CGG - chr2.4:63452579-63452598 MS.gene02358:intron 60.0%
! TCTCGGACTGGGGAAAGAGC+CGG + chr2.4:63452523-63452542 None:intergenic 60.0%
!! CATAGCGGGCGCTATTTCGG+TGG + chr2.4:63452875-63452894 None:intergenic 60.0%
!! GCACTGGAAGAGGTGCCAAC+AGG + chr2.4:63452969-63452988 None:intergenic 60.0%
!! GCGCATAGCGGGCGCTATTT+CGG + chr2.4:63452878-63452897 None:intergenic 60.0%
!!! GCGGCCGCTTTTGACAACAG+AGG + chr2.4:63452577-63452596 None:intergenic 60.0%
CAGGGCAAAGCCTCTCGGAC+TGG + chr2.4:63452535-63452554 None:intergenic 65.0%
CTTCGCTATAGCGGCCGGTG+CGG + chr2.4:63452596-63452615 None:intergenic 65.0%
GCCAACAGGGGAGCTGAGAG+AGG + chr2.4:63452955-63452974 None:intergenic 65.0%
GGCTCTTTCCCCAGTCCGAG+AGG - chr2.4:63452522-63452541 MS.gene02358:intron 65.0%
GGGCAAAGCCTCTCGGACTG+GGG + chr2.4:63452533-63452552 None:intergenic 65.0%
GGGGCTGAGGATGCGAAAGC+TGG - chr2.4:63453899-63453918 MS.gene02358:intron 65.0%
! GCGTCGGCGGGTATCAGAAG+TGG - chr2.4:63452650-63452669 MS.gene02358:intron 65.0%
! CGGACTGGGGAAAGAGCCGG+AGG + chr2.4:63452520-63452539 None:intergenic 70.0%
ACCACTGCGCCAGGCCGCGT+CGG - chr2.4:63452634-63452653 MS.gene02358:intron 75.0%
TGATACCCGCCGACGCGGCC+TGG + chr2.4:63452646-63452665 None:intergenic 75.0%
! ACTGCGCCAGGCCGCGTCGG+CGG - chr2.4:63452637-63452656 MS.gene02358:intron 80.0%
! GCCGACGCGGCCTGGCGCAG+TGG + chr2.4:63452638-63452657 None:intergenic 85.0%
!! CTGCGCCAGGCCGCGTCGGC+GGG - chr2.4:63452638-63452657 MS.gene02358:intron 85.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 63451651 63454177 63451651 ID=MS.gene02358
chr2.4 mRNA 63451651 63454177 63451651 ID=MS.gene02358.t1;Parent=MS.gene02358
chr2.4 exon 63453982 63454177 63453982 ID=MS.gene02358.t1.exon1;Parent=MS.gene02358.t1
chr2.4 CDS 63453982 63454177 63453982 ID=cds.MS.gene02358.t1;Parent=MS.gene02358.t1
chr2.4 exon 63451651 63452033 63451651 ID=MS.gene02358.t1.exon2;Parent=MS.gene02358.t1
chr2.4 CDS 63451651 63452033 63451651 ID=cds.MS.gene02358.t1;Parent=MS.gene02358.t1
Gene Sequence

>MS.gene02358

ATGGCTTTGGATCGGTTGAAACGAGGTCGTGGACCTGTTATGGTGAAAACCGTTGCTGGTACTGTTCTTGTTGTTTTGTCTTCTAGTGTTTATAGTATGATGAAGATTCAACAACGTGGGATCGAAGATGGTGCTTCTGTTAATCCTACCGATCAGGTTCTTATGGCTAAGCATCTTCTTGAAGCTACACTCATGGGTATGTTTTTTTTAAATGGGTTGTTGAAAAGTTTTGATTTTTGTTTATTTGCTTGATGAATGAATGAATTTTGTATGAGGAATTGAATTTGATTTATGTTTATGGATTTGGATTTAATGTGATTGCTCTGTTATGTGTAATTGTTTGCATTATTAATTTATTGAGTTTTTAGCATTATTATTTTTGTAAATATGATCAAATAGGTACATTTTTGTAATGTGTATAATTTTGCTTATAATTAAGACTGGACGGAGTATCTGTCAAGCACCGGATCCGATACGGAAACTAGATATGACACTGACACAGACACGTTGGAACAAAGAACGTTTTGTATGAGTTGTGAGATACATTTGTAAGAGTGTTGTACGGATGTAATACACCGGTGTGTGTTGGTCACGGAGATATGAATATATGATCAATCACAAAACCTTTTGGAAATTGAGAAGATCTTCTCGAATTCATGAACCCATTTTCTGATCTTTCGGAGTCATGTTCCCTTTTCCTTTCATTAATGTAGTCAACCTTACATTGTGATGAATATGTTGTCTCTGTTGTTGCTGATGCAATTGATGAGTGATGATCTCTAGTGATCTAAAAAATTTGTTTGTTTTGCTGCATCTGATGCAGCATGGCTGCCTTCAATTCTCGAATGGTTCTTGAGTTTACTGTGCCTCCGGCTCTTTCCCCAGTCCGAGAGGCTTTGCCCTGTCAAACGGGCTCCTCCTGTCCTCTGTTGTCAAAAGCGGCCGCACCGGCCGCTATAGCGAAGCGTAGCAGAAAAATCAGGACCACTGCGCCAGGCCGCGTCGGCGGGTATCAGAAGTGGAAAGCGGCAAAGCGGACCTATCAATAGTAAAACAATAACTTTTACTAGTTGTATATAATTGGTATTAGCGATTTTCAATTTTGCTATCCCTTTTATTTCATATTATGAATACTTCATGAAGTTTTGAGTAATGTTTAAGGTATTTTAGTATTTCTTTTGAATAGTATGGTATATAGTATTAAACTTATTAGTGGCTGCACCACCGAAATAGCGCCCGCTATGCGCCACACCGTATTTCTGCATTGACAACAGAGCTCCTATCTAGGTTCAGCTTCTAGACCTCTCTCAGCTCCCCTGTTGGCACCTCTTCCAGTGCCTATACCTCGTGAACTTGTATTTCGAACCGTGTTTTCCTGAAAAAGAATCACAATGATTCAGCATTCATAAGGCATAAGGATCATATAAACCATATGCATATATCTTATGATTGATTTAGTCAAATAGAAAGAGCCTTCACCCTTAGGTAAACCGGTCACTCTTGGTATTTTAGCCTCCTAATGGGCTCATATGATTCAGACGCACAACACTCATATAACTGAAGCTTCTAACTTGTAACTTGTGAGTGAAGCCTCGTTGGTTGTTTGCCTAATTCTTTGTTGGGTTATTCTGTAAATATTTGTGTTTCTTTTTGCTACCGATTTTTTCAATGGTTTAGAATGAATGTTGAGGCAACTTACATGGGATATGTGATCTTCTAAAGTTGAAAAATGTGAGCTTTGGAGAATGTTCTACTTTCTTGTGGTATTGTTTATTGATGAGTTATTGGTGGCATTAGCAGGGAGATTGAAATCAGATGTACTATATGATTTGCAATTTTTAGGATTCTCTCTCTCACAACTAGAAGCCATCTAGTATGTTGTTAAACTTTACAACTCAGATTGTATGTAATTTCCTAAGTTCAACATATTTCCAAATTTTTCAAAACATTGCTGTGTTCTTTGATTTTTAATAAGACCGGTCACATCTTAAAACAACATAGCTGAAGAGGTAAAGTTACAATTCCAATCCAACATAAACAATACTGTTGAGTTTCTGAACTGATTGTTCCTTAATATTTAGACTTATTAAAAGATATCCTCTGTGGCTTGCGAGCATTATTCATTCTTGGTCAATTATTTGCAGGTGCTATCCTTTTTCTTGCACTTATGATAGACAGACTGCATCATTACATAAGGGAACTCCGGATTCGGAGAAAGAGCATGGAAGCTGTTAAGAAACAAATGCGGGGGGCTGAGGATGCGAAAGCTGGAACTTCAGATGAAACTAAAACAATGGAGCAAGAAGCAGCTAAGTTGAGAGCAGAAGTTGATCGTCTGGAATCTGAACTTCAGTCAAAAGATAAAGAGGTAGGTGCTGCAGAAGCCAGTGTAAGTGCTCTAAGGAAACAATCTGAAGGGTTTCTTCTTGAATATGATCGCTTACTTGAGGAGAACCAAAACCTCCGCAACCAGCTACAATCTGTTGACAGAAGATTCTCACATTCAGTTTCCAAGAAGAATATGTGA
Protein sequence

>MS.gene02358.t1

MALDRLKRGRGPVMVKTVAGTVLVVLSSSVYSMMKIQQRGIEDGASVNPTDQVLMAKHLLEATLMGAILFLALMIDRLHHYIRELRIRRKSMEAVKKQMRGAEDAKAGTSDETKTMEQEAAKLRAEVDRLESELQSKDKEVGAAEASVSALRKQSEGFLLEYDRLLEENQNLRNQLQSVDRRFSHSVSKKNM