Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024287.t1 | XP_003624512.1 | 98.4 | 244 | 4 | 0 | 2 | 245 | 30 | 273 | 5.40E-137 | 496.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024287.t1 | P51132 | 81.6 | 239 | 40 | 1 | 11 | 245 | 34 | 272 | 9.4e-114 | 411.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024287.t1 | G7KXA6 | 98.4 | 244 | 4 | 0 | 2 | 245 | 30 | 273 | 3.9e-137 | 496.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024287 | MS.gene074111 | PPI |
| MS.gene55486 | MS.gene024287 | PPI |
| MS.gene55480 | MS.gene024287 | PPI |
| MS.gene47121 | MS.gene024287 | PPI |
| MS.gene074110 | MS.gene024287 | PPI |
| MS.gene47123 | MS.gene024287 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024287.t1 | MTR_7g084150 | 98.361 | 244 | 4 | 0 | 2 | 245 | 30 | 273 | 0.0 | 498 |
| MS.gene024287.t1 | MTR_3g082230 | 79.688 | 64 | 13 | 0 | 126 | 189 | 68 | 131 | 6.92e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024287.t1 | AT5G13430 | 84.259 | 216 | 34 | 0 | 30 | 245 | 57 | 272 | 2.76e-139 | 392 |
| MS.gene024287.t1 | AT5G13440 | 83.796 | 216 | 35 | 0 | 30 | 245 | 59 | 274 | 4.02e-139 | 391 |
Find 80 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCTCATTATGATATTTC+TGG | 0.147844 | 7.1:-20971572 | MS.gene024287:CDS |
| GAAACAGTTGCAGGAATTTC+AGG | 0.237158 | 7.1:+20972061 | None:intergenic |
| ATGATATTTCTGGCAGAATT+AGG | 0.242646 | 7.1:-20971562 | MS.gene024287:CDS |
| CCGATCACAACGAGCCATTC+TGG | 0.268480 | 7.1:+20971668 | None:intergenic |
| GGTACCAACTTATTCATTCT+TGG | 0.306788 | 7.1:-20971513 | MS.gene024287:CDS |
| AACAGATGACGATGTGAAAT+TGG | 0.317786 | 7.1:-20971753 | MS.gene024287:CDS |
| GATCGGTGTTTGCACACATC+TGG | 0.323690 | 7.1:-20971651 | MS.gene024287:CDS |
| TTCGCATACTTTGTCCTAAC+AGG | 0.331271 | 7.1:-20971953 | MS.gene024287:CDS |
| CTGAAGGGGAGAAAGAATTC+AGG | 0.347551 | 7.1:+20973867 | None:intergenic |
| GTGGAAGAAGGCGGTGGGAT+GGG | 0.349403 | 7.1:+20973927 | None:intergenic |
| GGGACCTGCACCATACAATT+TGG | 0.359660 | 7.1:-20971537 | MS.gene024287:CDS |
| TGCATTCCCTTGCCAAATGC+TGG | 0.381560 | 7.1:-20971626 | MS.gene024287:CDS |
| TGGAAGAAGGCGGTGGGATG+GGG | 0.385906 | 7.1:+20973928 | None:intergenic |
| CCGCCAAAGTCTCCAGCATT+TGG | 0.391956 | 7.1:+20971614 | None:intergenic |
| TCATATACAATCTTTGAAGA+TGG | 0.405797 | 7.1:+20972025 | None:intergenic |
| TTAACAGCAGAAACAGTTGC+AGG | 0.410008 | 7.1:+20972052 | None:intergenic |
| TTGCCAAATGCTGGAGACTT+TGG | 0.416842 | 7.1:-20971617 | MS.gene024287:CDS |
| GCCCTCTTGCTTGGATCACC+AGG | 0.425512 | 7.1:+20971977 | None:intergenic |
| GAATTCAGGGTGGATGGAAA+AGG | 0.437093 | 7.1:+20973881 | None:intergenic |
| TATGCGAATGCCCTCTTGCT+TGG | 0.442545 | 7.1:+20971968 | None:intergenic |
| AAACAAACCTTCCACCTGTT+AGG | 0.452175 | 7.1:+20971939 | None:intergenic |
| CCAAATGCTGGAGACTTTGG+CGG | 0.457248 | 7.1:-20971614 | MS.gene024287:CDS |
| GTGGAAAGCCAGTATTCATC+AGG | 0.460050 | 7.1:-20971781 | MS.gene024287:CDS |
| CGATCACAACGAGCCATTCT+GGG | 0.462447 | 7.1:+20971669 | None:intergenic |
| GCTCAGCATGTCCGCAAGTA+AGG | 0.463109 | 7.1:-20971879 | MS.gene024287:CDS |
| AATTCAGGGTGGATGGAAAA+GGG | 0.475500 | 7.1:+20973882 | None:intergenic |
| ACCTCCAAATTGTATGGTGC+AGG | 0.482330 | 7.1:+20971533 | None:intergenic |
| GTTCTGCGCCTGATGAATAC+TGG | 0.484039 | 7.1:+20971773 | None:intergenic |
| CAAACTTGAGGACAAGTAAA+CGG | 0.484302 | 7.1:+20971903 | None:intergenic |
| GGTGGAAGAAGGCGGTGGGA+TGG | 0.488335 | 7.1:+20973926 | None:intergenic |
| CACCAGGAGGAAACCGTTCA+TGG | 0.490179 | 7.1:+20971993 | None:intergenic |
| GTTGGTACCTCCAAATTGTA+TGG | 0.490642 | 7.1:+20971527 | None:intergenic |
| AGTAGTGCCTGGCTCAATGC+TGG | 0.496319 | 7.1:+20971820 | None:intergenic |
| AGATCTGCGTTGATCGGAGG+TGG | 0.496546 | 7.1:+20973908 | None:intergenic |
| ACCAACTTATTCATTCTTGG+AGG | 0.499770 | 7.1:-20971510 | MS.gene024287:CDS |
| TCCTCCAAGAATGAATAAGT+TGG | 0.514284 | 7.1:+20971509 | None:intergenic |
| GAGAAAGAATTCAGGGTGGA+TGG | 0.515260 | 7.1:+20973875 | None:intergenic |
| GGGAAAACACTTACCTCTGA+AGG | 0.518069 | 7.1:+20973851 | None:intergenic |
| AAGTAAGGATGTTCTTGCTA+TGG | 0.519506 | 7.1:-20971864 | MS.gene024287:CDS |
| AACCATGAACGGTTTCCTCC+TGG | 0.520987 | 7.1:-20971995 | MS.gene024287:CDS |
| CGTTGATCGGAGGTGGAAGA+AGG | 0.521939 | 7.1:+20973915 | None:intergenic |
| TCGGAGGTGGAAGAAGGCGG+TGG | 0.523668 | 7.1:+20973921 | None:intergenic |
| GAGGAAAACAAGTTGTTGAT+CGG | 0.524976 | 7.1:-20971491 | MS.gene024287:CDS |
| CCAGAATGGCTCGTTGTGAT+CGG | 0.536344 | 7.1:-20971668 | MS.gene024287:CDS |
| ATCGGTGTTTGCACACATCT+GGG | 0.542075 | 7.1:-20971650 | MS.gene024287:CDS |
| GATCTGTCCAGCATTGAGCC+AGG | 0.548945 | 7.1:-20971827 | MS.gene024287:CDS |
| GCACTACTGTCACTGTTAAG+TGG | 0.549316 | 7.1:-20971805 | MS.gene024287:CDS |
| CGGAGGTGGAAGAAGGCGGT+GGG | 0.553191 | 7.1:+20973922 | None:intergenic |
| TGAAGGGGAGAAAGAATTCA+GGG | 0.553314 | 7.1:+20973868 | None:intergenic |
| TATTTCTGGCAGAATTAGGA+AGG | 0.553507 | 7.1:-20971558 | MS.gene024287:CDS |
| CTCTCTCAGAATCTTGCTGA+GGG | 0.558977 | 7.1:+20971699 | None:intergenic |
| ATGCTGGAGACTTTGGCGGA+TGG | 0.561425 | 7.1:-20971610 | MS.gene024287:CDS |
| GGGGTCAGATCTGCGTTGAT+CGG | 0.562035 | 7.1:+20973902 | None:intergenic |
| GAATTCTTTCTCCCCTTCAG+AGG | 0.567157 | 7.1:-20973864 | MS.gene024287:intron |
| TTGGCAAACAGTGTTGATGT+TGG | 0.567703 | 7.1:-20971734 | MS.gene024287:CDS |
| ACTCTCTCAGAATCTTGCTG+AGG | 0.573430 | 7.1:+20971698 | None:intergenic |
| GGAAAACACTTACCTCTGAA+GGG | 0.576686 | 7.1:+20973852 | None:intergenic |
| TTAACAGTGACAGTAGTGCC+TGG | 0.588903 | 7.1:+20971809 | None:intergenic |
| GCATACTTTGTCCTAACAGG+TGG | 0.589727 | 7.1:-20971950 | MS.gene024287:CDS |
| ACTGTCACTGTTAAGTGGCG+TGG | 0.593737 | 7.1:-20971800 | MS.gene024287:CDS |
| TCATAATGAGATCCATGACA+TGG | 0.597841 | 7.1:+20971581 | None:intergenic |
| GTCAGATCTGCGTTGATCGG+AGG | 0.599812 | 7.1:+20973905 | None:intergenic |
| ATGATGAACACAACCATGAA+CGG | 0.601838 | 7.1:-20972006 | MS.gene024287:CDS |
| AAAGTCTCCAGCATTTGGCA+AGG | 0.607108 | 7.1:+20971619 | None:intergenic |
| ACTTTGTCCTAACAGGTGGA+AGG | 0.607644 | 7.1:-20971946 | MS.gene024287:CDS |
| AGAGAGTCAAGAACCCAGAA+TGG | 0.614301 | 7.1:-20971682 | MS.gene024287:CDS |
| ACCTGCACCATACAATTTGG+AGG | 0.619569 | 7.1:-20971534 | MS.gene024287:CDS |
| GAAAACACTTACCTCTGAAG+GGG | 0.626939 | 7.1:+20973853 | None:intergenic |
| ACATGCTGAGCACAAACTTG+AGG | 0.627184 | 7.1:+20971891 | None:intergenic |
| ATTCAGGGTGGATGGAAAAG+GGG | 0.632839 | 7.1:+20973883 | None:intergenic |
| AGCAAGAACATCCTTACTTG+CGG | 0.635054 | 7.1:+20971868 | None:intergenic |
| AAGTCTCCAGCATTTGGCAA+GGG | 0.635128 | 7.1:+20971620 | None:intergenic |
| ATTTCTGGCAGAATTAGGAA+GGG | 0.638657 | 7.1:-20971557 | MS.gene024287:CDS |
| CTCCTGGTGATCCAAGCAAG+AGG | 0.642258 | 7.1:-20971979 | MS.gene024287:CDS |
| TGATCGGAGGTGGAAGAAGG+CGG | 0.650837 | 7.1:+20973918 | None:intergenic |
| TCCTGGTGATCCAAGCAAGA+GGG | 0.654973 | 7.1:-20971978 | MS.gene024287:CDS |
| CATAATGAGATCCATGACAT+GGG | 0.657346 | 7.1:+20971582 | None:intergenic |
| GACAAGTAAACGGATCAAAG+AGG | 0.665826 | 7.1:+20971913 | None:intergenic |
| CTCTTGCTTGGATCACCAGG+AGG | 0.672619 | 7.1:+20971980 | None:intergenic |
| AGGGGAGAAAGAATTCAGGG+TGG | 0.779436 | 7.1:+20973871 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAATTAAATCAATTAA+TGG | + | chr7.1:20973321-20973340 | None:intergenic | 10.0% |
| !!! | ATTTATATTTTTATCTAACT+AGG | - | chr7.1:20973288-20973307 | MS.gene024287:intron | 10.0% |
| !!! | CAACAAAAAATATTTTTTTT+AGG | + | chr7.1:20972005-20972024 | None:intergenic | 10.0% |
| !!! | TTTGTTAAATATTTTATAGA+TGG | - | chr7.1:20972100-20972119 | MS.gene024287:CDS | 10.0% |
| !! | AAAATATTTAACAAAATAGG+TGG | + | chr7.1:20972095-20972114 | None:intergenic | 15.0% |
| !!! | TAATGATAAAATGTTTTTTG+TGG | - | chr7.1:20972239-20972258 | MS.gene024287:intron | 15.0% |
| !!! | TTTAGTTGTTACTTTTTTAT+GGG | - | chr7.1:20972403-20972422 | MS.gene024287:intron | 15.0% |
| !!! | TTTTAGTTGTTACTTTTTTA+TGG | - | chr7.1:20972402-20972421 | MS.gene024287:intron | 15.0% |
| !! | AAGATAGCAATTTAGTATTA+TGG | + | chr7.1:20972804-20972823 | None:intergenic | 20.0% |
| !! | TTAGAAAACAACAGTTAATA+AGG | + | chr7.1:20972437-20972456 | None:intergenic | 20.0% |
| !! | TTGTGATAATTTATGTGTTT+AGG | - | chr7.1:20971809-20971828 | MS.gene024287:CDS | 20.0% |
| !!! | AATAGTTTTGCTATTCATTT+AGG | - | chr7.1:20972717-20972736 | MS.gene024287:intron | 20.0% |
| !!! | AATTTATGTGTTTAGGTTTT+CGG | - | chr7.1:20971816-20971835 | MS.gene024287:CDS | 20.0% |
| !!! | ACATAAATTACTTTTTTCCA+GGG | - | chr7.1:20972467-20972486 | MS.gene024287:intron | 20.0% |
| !!! | ATTTGATTCGTTTTATGTTA+GGG | - | chr7.1:20971701-20971720 | MS.gene024287:CDS | 20.0% |
| !!! | TACATAAATTACTTTTTTCC+AGG | - | chr7.1:20972466-20972485 | MS.gene024287:intron | 20.0% |
| ! | AAAAGACATGAATATAGGAA+TGG | - | chr7.1:20972663-20972682 | MS.gene024287:intron | 25.0% |
| ! | AAGTGTAAAGTAACTGATAA+GGG | + | chr7.1:20972562-20972581 | None:intergenic | 25.0% |
| ! | ACCTTAAAAGACATGAATAT+AGG | - | chr7.1:20972658-20972677 | MS.gene024287:intron | 25.0% |
| ! | AGTTGCATATTATCTTACTT+TGG | - | chr7.1:20973182-20973201 | MS.gene024287:intron | 25.0% |
| ! | ATTAAACCAGAGTTTCAAAA+AGG | + | chr7.1:20972223-20972242 | None:intergenic | 25.0% |
| ! | ATTATGAACGAGGTATAATT+CGG | - | chr7.1:20972277-20972296 | MS.gene024287:intron | 25.0% |
| ! | GATCTATTAAGTTTGAATAG+AGG | + | chr7.1:20973138-20973157 | None:intergenic | 25.0% |
| ! | GTTGCATATTATCTTACTTT+GGG | - | chr7.1:20973183-20973202 | MS.gene024287:intron | 25.0% |
| ! | TAAAAAACTGCATGTTTAGT+TGG | - | chr7.1:20972894-20972913 | MS.gene024287:intron | 25.0% |
| ! | TAAGTGTAAAGTAACTGATA+AGG | + | chr7.1:20972563-20972582 | None:intergenic | 25.0% |
| ! | TGGTTATTGAATTGTTTAGT+TGG | - | chr7.1:20972914-20972933 | MS.gene024287:intron | 25.0% |
| ! | TTGCATATTATCTTACTTTG+GGG | - | chr7.1:20973184-20973203 | MS.gene024287:intron | 25.0% |
| !! | ATTTTAAACCATTATGAACG+AGG | - | chr7.1:20972267-20972286 | MS.gene024287:intron | 25.0% |
| !! | TAATTAGAAACAATTTTCCC+TGG | + | chr7.1:20972487-20972506 | None:intergenic | 25.0% |
| !! | TATCTATCTGTTCCATTTTA+TGG | - | chr7.1:20973014-20973033 | MS.gene024287:intron | 25.0% |
| !! | TCATATACAATCTTTGAAGA+TGG | + | chr7.1:20973435-20973454 | None:intergenic | 25.0% |
| !! | TCCTATATTCATGTCTTTTA+AGG | + | chr7.1:20972662-20972681 | None:intergenic | 25.0% |
| !!! | GATTTGATTCGTTTTATGTT+AGG | - | chr7.1:20971700-20971719 | MS.gene024287:CDS | 25.0% |
| !!! | TGACCCAAAATACTTTTTTA+GGG | - | chr7.1:20972939-20972958 | MS.gene024287:intron | 25.0% |
| !!! | TGTTAATTTTTTGCGCTATT+TGG | - | chr7.1:20971960-20971979 | MS.gene024287:CDS | 25.0% |
| !!! | TTGACCCAAAATACTTTTTT+AGG | - | chr7.1:20972938-20972957 | MS.gene024287:intron | 25.0% |
| AAAAGTTTCTTGTATCTGCA+CGG | + | chr7.1:20972172-20972191 | None:intergenic | 30.0% | |
| AATTATTCCATGTGTAGGTA+AGG | - | chr7.1:20973093-20973112 | MS.gene024287:intron | 30.0% | |
| ATGACTATATCAAAACTGGA+AGG | - | chr7.1:20972339-20972358 | MS.gene024287:intron | 30.0% | |
| CATAGTAAAATAACAGGCAA+GGG | + | chr7.1:20971629-20971648 | None:intergenic | 30.0% | |
| CGCAAAAAATTAACATGCTT+CGG | + | chr7.1:20971955-20971974 | None:intergenic | 30.0% | |
| GAATTATACCTCGTTCATAA+TGG | + | chr7.1:20972278-20972297 | None:intergenic | 30.0% | |
| GCAATAATTATTCCATGTGT+AGG | - | chr7.1:20973088-20973107 | MS.gene024287:intron | 30.0% | |
| GGATCTCATTATGATATTTC+TGG | - | chr7.1:20973885-20973904 | MS.gene024287:CDS | 30.0% | |
| GTGTTTATTGTTGTGTATGA+AGG | - | chr7.1:20971761-20971780 | MS.gene024287:CDS | 30.0% | |
| TACACTTATGTACCAATGAA+AGG | - | chr7.1:20972575-20972594 | MS.gene024287:intron | 30.0% | |
| TCGTGATTCTCTACAATAAA+AGG | + | chr7.1:20972149-20972168 | None:intergenic | 30.0% | |
| TGACTATATCAAAACTGGAA+GGG | - | chr7.1:20972340-20972359 | MS.gene024287:intron | 30.0% | |
| TGCATATTATCTTACTTTGG+GGG | - | chr7.1:20973185-20973204 | MS.gene024287:intron | 30.0% | |
| TTCCATGACTATATCAAAAC+TGG | - | chr7.1:20972335-20972354 | MS.gene024287:intron | 30.0% | |
| ! | ATATATGTCTTTTTCCGTTG+TGG | - | chr7.1:20972038-20972057 | MS.gene024287:CDS | 30.0% |
| ! | TAAGGCTGATCTATTCTTTT+GGG | - | chr7.1:20973111-20973130 | MS.gene024287:intron | 30.0% |
| ! | TATATGTCTTTTTCCGTTGT+GGG | - | chr7.1:20972039-20972058 | MS.gene024287:CDS | 30.0% |
| !! | ATGATATTTCTGGCAGAATT+AGG | - | chr7.1:20973895-20973914 | MS.gene024287:CDS | 30.0% |
| !! | GATTTAATTTGATTGCATCC+AGG | - | chr7.1:20973327-20973346 | MS.gene024287:intron | 30.0% |
| !! | TTCCAGTTTTGATATAGTCA+TGG | + | chr7.1:20972340-20972359 | None:intergenic | 30.0% |
| !!! | CCACCCTAAAAAAGTATTTT+GGG | + | chr7.1:20972945-20972964 | None:intergenic | 30.0% |
| !!! | TAATGCTGTTTTCTTTTGTG+TGG | + | chr7.1:20973374-20973393 | None:intergenic | 30.0% |
| !!! | TCCACCCTAAAAAAGTATTT+TGG | + | chr7.1:20972946-20972965 | None:intergenic | 30.0% |
| !!! | TTATAGATGGTTTTGATTCG+TGG | - | chr7.1:20972113-20972132 | MS.gene024287:intron | 30.0% |
| AACAGATGACGATGTGAAAT+TGG | - | chr7.1:20973704-20973723 | MS.gene024287:intron | 35.0% | |
| AAGTAAGGATGTTCTTGCTA+TGG | - | chr7.1:20973593-20973612 | MS.gene024287:intron | 35.0% | |
| AATACTCTCTCACCTTTCAT+TGG | + | chr7.1:20972590-20972609 | None:intergenic | 35.0% | |
| ACCAACTTATTCATTCTTGG+AGG | - | chr7.1:20973947-20973966 | MS.gene024287:intron | 35.0% | |
| ACCAGAGGTAAACCATAAAA+TGG | + | chr7.1:20973029-20973048 | None:intergenic | 35.0% | |
| AGACATGAATATAGGAATGG+AGG | - | chr7.1:20972666-20972685 | MS.gene024287:intron | 35.0% | |
| ATATGAACATCCCAGAAGAT+TGG | + | chr7.1:20971850-20971869 | None:intergenic | 35.0% | |
| ATGATGAACACAACCATGAA+CGG | - | chr7.1:20973451-20973470 | MS.gene024287:intron | 35.0% | |
| CAAACTTGAGGACAAGTAAA+CGG | + | chr7.1:20973557-20973576 | None:intergenic | 35.0% | |
| CACTGCCATAGTAAAATAAC+AGG | + | chr7.1:20971635-20971654 | None:intergenic | 35.0% | |
| CATAATGAGATCCATGACAT+GGG | + | chr7.1:20973878-20973897 | None:intergenic | 35.0% | |
| CCATAGTAAAATAACAGGCA+AGG | + | chr7.1:20971630-20971649 | None:intergenic | 35.0% | |
| GACATGAATATAGGAATGGA+GGG | - | chr7.1:20972667-20972686 | MS.gene024287:intron | 35.0% | |
| GAGGAAAACAAGTTGTTGAT+CGG | - | chr7.1:20973966-20973985 | MS.gene024287:intron | 35.0% | |
| GGATTTGATTCCAATCTTCT+GGG | - | chr7.1:20971837-20971856 | MS.gene024287:CDS | 35.0% | |
| GGTACCAACTTATTCATTCT+TGG | - | chr7.1:20973944-20973963 | MS.gene024287:intron | 35.0% | |
| TCATAATGAGATCCATGACA+TGG | + | chr7.1:20973879-20973898 | None:intergenic | 35.0% | |
| TCCTCCAAGAATGAATAAGT+TGG | + | chr7.1:20973951-20973970 | None:intergenic | 35.0% | |
| ! | ATTATCTTACTTTGGGGGAT+TGG | - | chr7.1:20973190-20973209 | MS.gene024287:intron | 35.0% |
| ! | GTAAGGCTGATCTATTCTTT+TGG | - | chr7.1:20973110-20973129 | MS.gene024287:intron | 35.0% |
| ! | TCCATTTTATGGTTTACCTC+TGG | - | chr7.1:20973025-20973044 | MS.gene024287:intron | 35.0% |
| !! | ATTTCTGGCAGAATTAGGAA+GGG | - | chr7.1:20973900-20973919 | MS.gene024287:CDS | 35.0% |
| !! | TATTTCTGGCAGAATTAGGA+AGG | - | chr7.1:20973899-20973918 | MS.gene024287:CDS | 35.0% |
| !!! | CCCAAAATACTTTTTTAGGG+TGG | - | chr7.1:20972942-20972961 | MS.gene024287:intron | 35.0% |
| !!! | CCTTGCCTGTTATTTTACTA+TGG | - | chr7.1:20971627-20971646 | MS.gene024287:CDS | 35.0% |
| !!! | CTGTTATTTTACTATGGCAG+TGG | - | chr7.1:20971633-20971652 | MS.gene024287:CDS | 35.0% |
| AAACAAACCTTCCACCTGTT+AGG | + | chr7.1:20973521-20973540 | None:intergenic | 40.0% | |
| AATTCAGGGTGGATGGAAAA+GGG | + | chr7.1:20971578-20971597 | None:intergenic | 40.0% | |
| ACCAGAGTTTCAAAAAGGTG+AGG | + | chr7.1:20972218-20972237 | None:intergenic | 40.0% | |
| AGCAAGAACATCCTTACTTG+CGG | + | chr7.1:20973592-20973611 | None:intergenic | 40.0% | |
| ATTGTGCGTATGCTATTCGT+TGG | - | chr7.1:20973227-20973246 | MS.gene024287:intron | 40.0% | |
| CCAGAGTTTCAAAAAGGTGA+GGG | + | chr7.1:20972217-20972236 | None:intergenic | 40.0% | |
| CGGATTTGATTCCAATCTTC+TGG | - | chr7.1:20971836-20971855 | MS.gene024287:CDS | 40.0% | |
| GAAACAGTTGCAGGAATTTC+AGG | + | chr7.1:20973399-20973418 | None:intergenic | 40.0% | |
| GACAAGTAAACGGATCAAAG+AGG | + | chr7.1:20973547-20973566 | None:intergenic | 40.0% | |
| GATCAAATGATACAGACCAG+AGG | + | chr7.1:20973044-20973063 | None:intergenic | 40.0% | |
| GGAAAACACTTACCTCTGAA+GGG | + | chr7.1:20971608-20971627 | None:intergenic | 40.0% | |
| GTTCTTAGAGAGGAAAGAAG+AGG | + | chr7.1:20971510-20971529 | None:intergenic | 40.0% | |
| GTTGGTACCTCCAAATTGTA+TGG | + | chr7.1:20973933-20973952 | None:intergenic | 40.0% | |
| TGAAGGGGAGAAAGAATTCA+GGG | + | chr7.1:20971592-20971611 | None:intergenic | 40.0% | |
| TTAACAGCAGAAACAGTTGC+AGG | + | chr7.1:20973408-20973427 | None:intergenic | 40.0% | |
| TTCGCATACTTTGTCCTAAC+AGG | - | chr7.1:20973504-20973523 | MS.gene024287:intron | 40.0% | |
| TTGTGCGTATGCTATTCGTT+GGG | - | chr7.1:20973228-20973247 | MS.gene024287:intron | 40.0% | |
| ! | GAAAACACTTACCTCTGAAG+GGG | + | chr7.1:20971607-20971626 | None:intergenic | 40.0% |
| ! | GTGTGTTTGAAGTAGAATCG+AGG | - | chr7.1:20971893-20971912 | MS.gene024287:CDS | 40.0% |
| ! | GTTTGAAGTAGAATCGAGGA+TGG | - | chr7.1:20971897-20971916 | MS.gene024287:CDS | 40.0% |
| ! | TTGGGTTGTGTGTTAGTATG+AGG | - | chr7.1:20973246-20973265 | MS.gene024287:intron | 40.0% |
| !! | TTGGCAAACAGTGTTGATGT+TGG | - | chr7.1:20973723-20973742 | MS.gene024287:intron | 40.0% |
| AAAGTCTCCAGCATTTGGCA+AGG | + | chr7.1:20973841-20973860 | None:intergenic | 45.0% | |
| AAGTCTCCAGCATTTGGCAA+GGG | + | chr7.1:20973840-20973859 | None:intergenic | 45.0% | |
| ACATGCTGAGCACAAACTTG+AGG | + | chr7.1:20973569-20973588 | None:intergenic | 45.0% | |
| ACCTCCAAATTGTATGGTGC+AGG | + | chr7.1:20973927-20973946 | None:intergenic | 45.0% | |
| ACCTGCACCATACAATTTGG+AGG | - | chr7.1:20973923-20973942 | MS.gene024287:CDS | 45.0% | |
| ACTCTCTCAGAATCTTGCTG+AGG | + | chr7.1:20973762-20973781 | None:intergenic | 45.0% | |
| ACTTTGTCCTAACAGGTGGA+AGG | - | chr7.1:20973511-20973530 | MS.gene024287:intron | 45.0% | |
| AGAGAGTCAAGAACCCAGAA+TGG | - | chr7.1:20973775-20973794 | MS.gene024287:intron | 45.0% | |
| AGATCAGCCTTACCTACACA+TGG | + | chr7.1:20973103-20973122 | None:intergenic | 45.0% | |
| AGTGACTCAGTAGCAAAACC+TGG | + | chr7.1:20973348-20973367 | None:intergenic | 45.0% | |
| ATTCAGGGTGGATGGAAAAG+GGG | + | chr7.1:20971577-20971596 | None:intergenic | 45.0% | |
| CTCTCTCAGAATCTTGCTGA+GGG | + | chr7.1:20973761-20973780 | None:intergenic | 45.0% | |
| CTGAAGGGGAGAAAGAATTC+AGG | + | chr7.1:20971593-20971612 | None:intergenic | 45.0% | |
| CTTAGAGAGGAAAGAAGAGG+CGG | + | chr7.1:20971507-20971526 | None:intergenic | 45.0% | |
| GAATTCAGGGTGGATGGAAA+AGG | + | chr7.1:20971579-20971598 | None:intergenic | 45.0% | |
| GAATTCTTTCTCCCCTTCAG+AGG | - | chr7.1:20971593-20971612 | MS.gene024287:CDS | 45.0% | |
| GAGAAAGAATTCAGGGTGGA+TGG | + | chr7.1:20971585-20971604 | None:intergenic | 45.0% | |
| GCACTACTGTCACTGTTAAG+TGG | - | chr7.1:20973652-20973671 | MS.gene024287:intron | 45.0% | |
| GCATACTTTGTCCTAACAGG+TGG | - | chr7.1:20973507-20973526 | MS.gene024287:intron | 45.0% | |
| GGGAAAACACTTACCTCTGA+AGG | + | chr7.1:20971609-20971628 | None:intergenic | 45.0% | |
| GTGGAAAGCCAGTATTCATC+AGG | - | chr7.1:20973676-20973695 | MS.gene024287:intron | 45.0% | |
| TTAACAGTGACAGTAGTGCC+TGG | + | chr7.1:20973651-20973670 | None:intergenic | 45.0% | |
| TTGCAGTTCCAAACCCACAA+CGG | + | chr7.1:20972055-20972074 | None:intergenic | 45.0% | |
| TTGCCAAATGCTGGAGACTT+TGG | - | chr7.1:20973840-20973859 | MS.gene024287:intron | 45.0% | |
| ! | ATCGGTGTTTGCACACATCT+GGG | - | chr7.1:20973807-20973826 | MS.gene024287:intron | 45.0% |
| ! | GTCTTTTTCCGTTGTGGGTT+TGG | - | chr7.1:20972044-20972063 | MS.gene024287:CDS | 45.0% |
| !!! | CCCTCACCTTTTTGAAACTC+TGG | - | chr7.1:20972214-20972233 | MS.gene024287:intron | 45.0% |
| !! | TATAAAATATTTAACAAAAT+AGG | + | chr7.1:20972098-20972117 | None:intergenic | 5.0% |
| AACCATGAACGGTTTCCTCC+TGG | - | chr7.1:20973462-20973481 | MS.gene024287:intron | 50.0% | |
| ACTGTCACTGTTAAGTGGCG+TGG | - | chr7.1:20973657-20973676 | MS.gene024287:intron | 50.0% | |
| AGGGGAGAAAGAATTCAGGG+TGG | + | chr7.1:20971589-20971608 | None:intergenic | 50.0% | |
| CCAAATGCTGGAGACTTTGG+CGG | - | chr7.1:20973843-20973862 | MS.gene024287:intron | 50.0% | |
| CCAGAATGGCTCGTTGTGAT+CGG | - | chr7.1:20973789-20973808 | MS.gene024287:intron | 50.0% | |
| CGATCACAACGAGCCATTCT+GGG | + | chr7.1:20973791-20973810 | None:intergenic | 50.0% | |
| GGGACCTGCACCATACAATT+TGG | - | chr7.1:20973920-20973939 | MS.gene024287:CDS | 50.0% | |
| GTTCTGCGCCTGATGAATAC+TGG | + | chr7.1:20973687-20973706 | None:intergenic | 50.0% | |
| TATGCGAATGCCCTCTTGCT+TGG | + | chr7.1:20973492-20973511 | None:intergenic | 50.0% | |
| TCCTGGTGATCCAAGCAAGA+GGG | - | chr7.1:20973479-20973498 | MS.gene024287:intron | 50.0% | |
| TGCATTCCCTTGCCAAATGC+TGG | - | chr7.1:20973831-20973850 | MS.gene024287:intron | 50.0% | |
| ! | AAAGGTGAGGGAGCATGCTT+TGG | + | chr7.1:20972205-20972224 | None:intergenic | 50.0% |
| ! | AAGGTGAGGGAGCATGCTTT+GGG | + | chr7.1:20972204-20972223 | None:intergenic | 50.0% |
| ! | GATCGGTGTTTGCACACATC+TGG | - | chr7.1:20973806-20973825 | MS.gene024287:intron | 50.0% |
| !! | GGATGGTTTTGCCCATGTCA+TGG | - | chr7.1:20973864-20973883 | MS.gene024287:intron | 50.0% |
| AGTAGTGCCTGGCTCAATGC+TGG | + | chr7.1:20973640-20973659 | None:intergenic | 55.0% | |
| ATGCTGGAGACTTTGGCGGA+TGG | - | chr7.1:20973847-20973866 | MS.gene024287:intron | 55.0% | |
| CACCAGGAGGAAACCGTTCA+TGG | + | chr7.1:20973467-20973486 | None:intergenic | 55.0% | |
| CCGATCACAACGAGCCATTC+TGG | + | chr7.1:20973792-20973811 | None:intergenic | 55.0% | |
| CCGCCAAAGTCTCCAGCATT+TGG | + | chr7.1:20973846-20973865 | None:intergenic | 55.0% | |
| CGTTGATCGGAGGTGGAAGA+AGG | + | chr7.1:20971545-20971564 | None:intergenic | 55.0% | |
| CTCCTGGTGATCCAAGCAAG+AGG | - | chr7.1:20973478-20973497 | MS.gene024287:intron | 55.0% | |
| CTCTTGCTTGGATCACCAGG+AGG | + | chr7.1:20973480-20973499 | None:intergenic | 55.0% | |
| GCTCAGCATGTCCGCAAGTA+AGG | - | chr7.1:20973578-20973597 | MS.gene024287:intron | 55.0% | |
| GTGGGATGGGGTTCTTAGAG+AGG | + | chr7.1:20971520-20971539 | None:intergenic | 55.0% | |
| TGATCGGAGGTGGAAGAAGG+CGG | + | chr7.1:20971542-20971561 | None:intergenic | 55.0% | |
| ! | AGATCTGCGTTGATCGGAGG+TGG | + | chr7.1:20971552-20971571 | None:intergenic | 55.0% |
| ! | GATCTGTCCAGCATTGAGCC+AGG | - | chr7.1:20973630-20973649 | MS.gene024287:intron | 55.0% |
| ! | GGGGTCAGATCTGCGTTGAT+CGG | + | chr7.1:20971558-20971577 | None:intergenic | 55.0% |
| ! | GTCAGATCTGCGTTGATCGG+AGG | + | chr7.1:20971555-20971574 | None:intergenic | 55.0% |
| AGAGGAAAGAAGAGGCGGCG+TGG | + | chr7.1:20971502-20971521 | None:intergenic | 60.0% | |
| GCCCTCTTGCTTGGATCACC+AGG | + | chr7.1:20973483-20973502 | None:intergenic | 60.0% | |
| GTGGAAGAAGGCGGTGGGAT+GGG | + | chr7.1:20971533-20971552 | None:intergenic | 60.0% | |
| TGGAAGAAGGCGGTGGGATG+GGG | + | chr7.1:20971532-20971551 | None:intergenic | 60.0% | |
| CGGAGGTGGAAGAAGGCGGT+GGG | + | chr7.1:20971538-20971557 | None:intergenic | 65.0% | |
| GGTGGAAGAAGGCGGTGGGA+TGG | + | chr7.1:20971534-20971553 | None:intergenic | 65.0% | |
| TCGGAGGTGGAAGAAGGCGG+TGG | + | chr7.1:20971539-20971558 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 20971487 | 20973992 | 20971487 | ID=MS.gene024287 |
| chr7.1 | mRNA | 20971487 | 20973992 | 20971487 | ID=MS.gene024287.t1;Parent=MS.gene024287 |
| chr7.1 | exon | 20973987 | 20973992 | 20973987 | ID=MS.gene024287.t1.exon1;Parent=MS.gene024287.t1 |
| chr7.1 | CDS | 20973987 | 20973992 | 20973987 | ID=cds.MS.gene024287.t1;Parent=MS.gene024287.t1 |
| chr7.1 | exon | 20973865 | 20973952 | 20973865 | ID=MS.gene024287.t1.exon2;Parent=MS.gene024287.t1 |
| chr7.1 | CDS | 20973865 | 20973952 | 20973865 | ID=cds.MS.gene024287.t1;Parent=MS.gene024287.t1 |
| chr7.1 | exon | 20971487 | 20972130 | 20971487 | ID=MS.gene024287.t1.exon3;Parent=MS.gene024287.t1 |
| chr7.1 | CDS | 20971487 | 20972130 | 20971487 | ID=cds.MS.gene024287.t1;Parent=MS.gene024287.t1 |
| Gene Sequence |
| Protein sequence |
