AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074110.t1 MTR_6g023290 97.720 307 7 0 1 307 1 307 0.0 621
MS.gene074110.t1 MTR_6g023230 93.160 307 20 1 1 307 1 306 0.0 561
MS.gene074110.t1 MTR_6g023280 80.702 57 11 0 132 188 2 58 6.24e-28 103
MS.gene074110.t1 MTR_6g023270 54.867 113 28 2 22 117 35 141 7.70e-25 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074110.t1 AT5G40810 84.142 309 44 2 1 307 2 307 1.26e-179 498
MS.gene074110.t1 AT3G27240 84.142 309 44 2 1 307 2 307 1.85e-178 495
MS.gene074110.t1 AT5G40810 91.538 260 22 0 48 307 1 260 1.17e-168 468

Find 79 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGGTGTCTCAGGTCTTT+TGG 0.163244 6.1:-6845572 MS.gene074110:CDS
TTTAGAGCCCTTGCATTAAT+TGG 0.177750 6.1:-6845595 MS.gene074110:CDS
TATGTGTTTGCTCTTCTTAC+TGG 0.252038 6.1:-6844809 MS.gene074110:CDS
ACACGCAGATGGGATTTAAA+TGG 0.254759 6.1:-6843859 MS.gene074110:intron
GTGTTATTCAGCAGTTATTA+AGG 0.278894 6.1:-6846043 MS.gene074110:CDS
ATGGATATTTGTACTTTCAT+TGG 0.329694 6.1:-6843840 MS.gene074110:CDS
ATGGCTCCACCAGGAAAATA+AGG 0.345219 6.1:+6844193 None:intergenic
AAAGCGGTCACTGAGTTTAC+CGG 0.394263 6.1:+6845021 None:intergenic
TTAATTGGAGCTGGTGTCTC+AGG 0.408185 6.1:-6845580 MS.gene074110:CDS
TTTGATATCATACCGTGATT+TGG 0.414012 6.1:-6845140 MS.gene074110:CDS
AAATCTAGCAGCTGATTCAT+TGG 0.442861 6.1:+6844985 None:intergenic
AGTACCTGAGCTTCGGTAGC+AGG 0.444945 6.1:+6844118 None:intergenic
CTGCATACTATCGTCGTCTT+CGG 0.445619 6.1:-6843805 MS.gene074110:CDS
AATTAATGCAAGGGCTCTAA+AGG 0.447468 6.1:+6845597 None:intergenic
TGCTTACAGGAGAATGAGAT+TGG 0.449957 6.1:+6846012 None:intergenic
AACATCTCACCCTCATCATT+AGG 0.454603 6.1:+6845052 None:intergenic
ACTGAGATTGAGGTGGTTGA+TGG 0.462032 6.1:-6845076 MS.gene074110:CDS
TAACTGCTGAATAACACTTC+CGG 0.468696 6.1:+6846049 None:intergenic
TGAGATGGAAGAGCGAAAAC+TGG 0.475157 6.1:-6843964 MS.gene074110:intron
TTTGGTGATAAGACTTAGAT+CGG 0.476391 6.1:+6844940 None:intergenic
TGATGAAGCTGAGCATGGCC+TGG 0.478869 6.1:-6845527 MS.gene074110:CDS
GCAGCTGATTCATTGGCATA+TGG 0.480740 6.1:+6844992 None:intergenic
TCAGCTGCTAGATTTGCTAA+TGG 0.481738 6.1:-6844977 MS.gene074110:CDS
GCCCTTGCATTAATTGGAGC+TGG 0.488291 6.1:-6845589 MS.gene074110:CDS
TGGCTGCTCCAAGCTATCCA+TGG 0.490029 6.1:-6845507 MS.gene074110:CDS
TCATGAGGCCATGGATAGCT+TGG 0.491735 6.1:+6845499 None:intergenic
TTGGGCTGCGGAACCTGAGA+TGG 0.499239 6.1:-6843979 MS.gene074110:CDS
GAATTTACCACAACACCGGC+AGG 0.499511 6.1:+6844773 None:intergenic
ATGGATAGCTTGGAGCAGCC+AGG 0.501176 6.1:+6845509 None:intergenic
TATCAAAGACATGGAATGGC+AGG 0.507429 6.1:+6845156 None:intergenic
GGCAATGGCTACTGAGATTG+AGG 0.520932 6.1:-6845086 MS.gene074110:CDS
GGTGAGATGTTTACGCGTCC+CGG 0.521774 6.1:-6845040 MS.gene074110:CDS
TTACACAGAAGCAGAGGTAA+AGG 0.531648 6.1:-6845107 MS.gene074110:CDS
ATGATATCAAAGACATGGAA+TGG 0.537539 6.1:+6845152 None:intergenic
ACATGAAAGTACCTGAGCTT+CGG 0.540618 6.1:+6844111 None:intergenic
TCGATAATCACGAAGAATGA+TGG 0.541883 6.1:-6845643 MS.gene074110:CDS
TACCCCTGCTACCGAAGCTC+AGG 0.543312 6.1:-6844122 MS.gene074110:intron
GTACCTGAGCTTCGGTAGCA+GGG 0.545684 6.1:+6844119 None:intergenic
ATTATCGATGACATAGATGA+AGG 0.546169 6.1:+6845658 None:intergenic
AAGACTTAGATCGGGAGGAT+AGG 0.547343 6.1:+6844949 None:intergenic
ATTTACCACAACACCGGCAG+GGG 0.559091 6.1:+6844775 None:intergenic
CATACTATCGTCGTCTTCGG+TGG 0.561768 6.1:-6843802 MS.gene074110:CDS
TGTTCTTAAGTCTCGCAAGT+TGG 0.563450 6.1:-6843777 MS.gene074110:CDS
AGGATCCCCTCATGAGGCCA+TGG 0.565016 6.1:+6845490 None:intergenic
ATCACGAAGAATGATGGTGC+TGG 0.570371 6.1:-6845637 MS.gene074110:CDS
GGCATGGCAATGGCTCCACC+AGG 0.572110 6.1:+6844184 None:intergenic
TTGGTGATAAGACTTAGATC+GGG 0.572832 6.1:+6844941 None:intergenic
ATTATAATGCAGATTAGAGA+AGG 0.578796 6.1:-6844229 MS.gene074110:intron
CCAGTGTGGATTGAGATGGC+CGG 0.582741 6.1:-6846068 None:intergenic
CACCAGCTCCAATTAATGCA+AGG 0.584280 6.1:+6845587 None:intergenic
GATTCATTGGCATATGGCTG+AGG 0.585594 6.1:+6844998 None:intergenic
AAGCTATCCATGGCCTCATG+AGG 0.588625 6.1:-6845497 MS.gene074110:CDS
TCAGCTGATGAAGCTGAGCA+TGG 0.598104 6.1:-6845532 MS.gene074110:CDS
AGCTATCCATGGCCTCATGA+GGG 0.606165 6.1:-6845496 MS.gene074110:CDS
ACCAGCTCCAATTAATGCAA+GGG 0.607014 6.1:+6845588 None:intergenic
AGAAGCAGAGGTAAAGGCAA+TGG 0.614386 6.1:-6845101 MS.gene074110:CDS
ATATCATACCGTGATTTGGT+TGG 0.618625 6.1:-6845136 MS.gene074110:CDS
TGGCATATGGCTGAGGAAAG+CGG 0.621500 6.1:+6845005 None:intergenic
AAGCGGTCACTGAGTTTACC+GGG 0.621651 6.1:+6845022 None:intergenic
GTGATAAGACTTAGATCGGG+AGG 0.623034 6.1:+6844944 None:intergenic
AATTTACCACAACACCGGCA+GGG 0.624788 6.1:+6844774 None:intergenic
TACCTGAGCTTCGGTAGCAG+GGG 0.625058 6.1:+6844120 None:intergenic
TTATTCAGCAGTTATTAAGG+AGG 0.626397 6.1:-6846040 MS.gene074110:CDS
ACGGTATGATATCAAAGACA+TGG 0.629932 6.1:+6845147 None:intergenic
GCTGCTAGATTTGCTAATGG+AGG 0.631927 6.1:-6844974 MS.gene074110:CDS
TTTACCACAACACCGGCAGG+GGG 0.636438 6.1:+6844776 None:intergenic
GCTATCCATGGCCTCATGAG+GGG 0.655077 6.1:-6845495 MS.gene074110:CDS
AAGCAACACCAACCAAATCA+CGG 0.657890 6.1:+6845128 None:intergenic
GAACTGAGGATCCCCTCATG+AGG 0.659838 6.1:+6845484 None:intergenic
GGTGCTGTTGAATATGAAGA+TGG 0.661076 6.1:-6844145 MS.gene074110:CDS
TGTTGCTTACACAGAAGCAG+AGG 0.672776 6.1:-6845113 MS.gene074110:CDS
AAGAGAATTTACCACAACAC+CGG 0.679783 6.1:+6844769 None:intergenic
ATGCCTAAAATGCTTAATGA+CGG 0.685307 6.1:-6844166 MS.gene074110:CDS
GTTGATGGACCTAATGATGA+GGG 0.686132 6.1:-6845061 MS.gene074110:CDS
AAGCATGATCATATGAACTG+AGG 0.690695 6.1:+6845470 None:intergenic
GGTTGATGGACCTAATGATG+AGG 0.695082 6.1:-6845062 MS.gene074110:CDS
TTTATGAGCAGGATTCGTCG+TGG 0.711228 6.1:-6845208 MS.gene074110:intron
AATGGCTACTGAGATTGAGG+TGG 0.749311 6.1:-6845083 MS.gene074110:CDS
TTACCACAACACCGGCAGGG+GGG 0.770333 6.1:+6844777 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTAATATTT+AGG - chr6.1:6843851-6843870 MS.gene074110:CDS 0.0%
!! TATGGTAAATAAAGACATTA+TGG - chr6.1:6845302-6845321 MS.gene074110:intron 20.0%
!!! AAATCATATATTTTCTCAAG+TGG + chr6.1:6845913-6845932 None:intergenic 20.0%
!!! GTTGTAAGTACATTTTTAAT+TGG - chr6.1:6844497-6844516 MS.gene074110:intron 20.0%
!!! TTAAAAATCTGGTTTGTTTT+GGG + chr6.1:6845139-6845158 None:intergenic 20.0%
!!! TTTAAAAATCTGGTTTGTTT+TGG + chr6.1:6845140-6845159 None:intergenic 20.0%
! AAAGAAGGATAGAATAATAG+AGG + chr6.1:6845879-6845898 None:intergenic 25.0%
! ACCCAAAAACATGAAAATAT+AGG + chr6.1:6844388-6844407 None:intergenic 25.0%
! AGTCTAGAAAAAAGAAATCA+TGG + chr6.1:6844568-6844587 None:intergenic 25.0%
! ATGGATATTTGTACTTTCAT+TGG - chr6.1:6845970-6845989 MS.gene074110:intron 25.0%
! ATTATAATGCAGATTAGAGA+AGG - chr6.1:6845581-6845600 MS.gene074110:CDS 25.0%
! CCCAAAAACATGAAAATATA+GGG + chr6.1:6844387-6844406 None:intergenic 25.0%
! CTCTAATCTGCATTATAATT+TGG + chr6.1:6845580-6845599 None:intergenic 25.0%
! GAATTGATATGACAATTAGA+TGG + chr6.1:6845467-6845486 None:intergenic 25.0%
! GGAAAATTGTTATAAACTCA+TGG + chr6.1:6844073-6844092 None:intergenic 25.0%
! TTAGGTCATTGTTTGATATA+GGG - chr6.1:6843989-6844008 MS.gene074110:CDS 25.0%
!! AGACAACTGATTTAAAAATC+TGG + chr6.1:6845150-6845169 None:intergenic 25.0%
!! ATTTTCTGAATTTTATGAGC+AGG - chr6.1:6844591-6844610 MS.gene074110:intron 25.0%
!! CCCTATATTTTCATGTTTTT+GGG - chr6.1:6844384-6844403 MS.gene074110:intron 25.0%
!! GCATGCATATTTTCATTTAT+TGG + chr6.1:6845249-6845268 None:intergenic 25.0%
!! TAGTTAACCTTTGTATTTTC+AGG - chr6.1:6844958-6844977 MS.gene074110:CDS 25.0%
!! TCCCTATATTTTCATGTTTT+TGG - chr6.1:6844383-6844402 MS.gene074110:intron 25.0%
!! TTACATCAGATTTTTGTGAA+TGG - chr6.1:6845547-6845566 MS.gene074110:CDS 25.0%
!! TTATAACAATTTTCCTTCCA+TGG - chr6.1:6844078-6844097 MS.gene074110:intron 25.0%
!!! GCACAATTTGTTATTAGATA+TGG - chr6.1:6845284-6845303 MS.gene074110:intron 25.0%
!!! TTTATTTTGTTGTTGCAGAT+GGG - chr6.1:6845784-6845803 MS.gene074110:intron 25.0%
!!! TTTTATTTTGTTGTTGCAGA+TGG - chr6.1:6845783-6845802 MS.gene074110:intron 25.0%
ACACCTAATGAGAATGAATA+TGG - chr6.1:6845348-6845367 MS.gene074110:intron 30.0%
ATCAAATTGTCTGTTGCTAA+TGG - chr6.1:6844105-6844124 MS.gene074110:intron 30.0%
ATCACCTTAAAATGCAAAAG+AGG + chr6.1:6844461-6844480 None:intergenic 30.0%
ATGAAAATTATCACGAAGAG+AGG + chr6.1:6843830-6843849 None:intergenic 30.0%
ATGATATCAAAGACATGGAA+TGG + chr6.1:6844661-6844680 None:intergenic 30.0%
ATGCCTAAAATGCTTAATGA+CGG - chr6.1:6845644-6845663 MS.gene074110:CDS 30.0%
ATTATCGATGACATAGATGA+AGG + chr6.1:6844155-6844174 None:intergenic 30.0%
CACCATAATAGTCCATATAA+TGG + chr6.1:6844020-6844039 None:intergenic 30.0%
CTTAGGTCATTGTTTGATAT+AGG - chr6.1:6843988-6844007 MS.gene074110:CDS 30.0%
TATAGGGAAAAGCCATTATA+TGG - chr6.1:6844005-6844024 MS.gene074110:CDS 30.0%
TCACCTTAAAATGCAAAAGA+GGG + chr6.1:6844460-6844479 None:intergenic 30.0%
TTATTCAGCAGTTATTAAGG+AGG - chr6.1:6843770-6843789 MS.gene074110:CDS 30.0%
TTTGATATCATACCGTGATT+TGG - chr6.1:6844670-6844689 MS.gene074110:intron 30.0%
! AAATTGTGCTATTCCACATT+AGG + chr6.1:6845273-6845292 None:intergenic 30.0%
! AATATTTAGGACTATGCTTC+TGG - chr6.1:6843864-6843883 MS.gene074110:intron 30.0%
! AGCCATTATATGGACTATTA+TGG - chr6.1:6844015-6844034 MS.gene074110:intron 30.0%
! GTGTTATTCAGCAGTTATTA+AGG - chr6.1:6843767-6843786 MS.gene074110:CDS 30.0%
! TCATATATTTTCTCAAGTGG+AGG + chr6.1:6845910-6845929 None:intergenic 30.0%
! TTTGGTGATAAGACTTAGAT+CGG + chr6.1:6844873-6844892 None:intergenic 30.0%
!! TGCAGAAGTTGATATATACT+GGG - chr6.1:6845104-6845123 MS.gene074110:CDS 30.0%
!! TTATGGCATCATTTAGTTTG+TGG - chr6.1:6845319-6845338 MS.gene074110:intron 30.0%
!! TTGCAGAAGTTGATATATAC+TGG - chr6.1:6845103-6845122 MS.gene074110:CDS 30.0%
!!! ATGTTGTGTCATTTTTGTCT+TGG - chr6.1:6845812-6845831 MS.gene074110:intron 30.0%
!!! CACTATAATCCTTATTTTCC+TGG - chr6.1:6845608-6845627 MS.gene074110:CDS 30.0%
!!! TATAATCCTTATTTTCCTGG+TGG - chr6.1:6845611-6845630 MS.gene074110:CDS 30.0%
!!! TGTTGTGTCATTTTTGTCTT+GGG - chr6.1:6845813-6845832 MS.gene074110:intron 30.0%
!!! TTATTTTGTTGTTGCAGATG+GGG - chr6.1:6845785-6845804 MS.gene074110:intron 30.0%
AAATATGCATGCACCTAATG+TGG - chr6.1:6845257-6845276 MS.gene074110:intron 35.0%
AAGAGAATTTACCACAACAC+CGG + chr6.1:6845044-6845063 None:intergenic 35.0%
AAGCATGATCATATGAACTG+AGG + chr6.1:6844343-6844362 None:intergenic 35.0%
ACGGTATGATATCAAAGACA+TGG + chr6.1:6844666-6844685 None:intergenic 35.0%
CAATTTGATTGTTCCATGGA+AGG + chr6.1:6844094-6844113 None:intergenic 35.0%
CAGACAATTTGATTGTTCCA+TGG + chr6.1:6844098-6844117 None:intergenic 35.0%
CCACCATATTCATTCTCATT+AGG + chr6.1:6845354-6845373 None:intergenic 35.0%
CCTAATGAGAATGAATATGG+TGG - chr6.1:6845351-6845370 MS.gene074110:intron 35.0%
CTATCTTCTATTACAGGCTT+AGG - chr6.1:6843971-6843990 MS.gene074110:CDS 35.0%
GACAATTCAAGTCACATGTA+AGG + chr6.1:6845386-6845405 None:intergenic 35.0%
TAAATCAGTTGTCTGAGTAG+TGG - chr6.1:6845156-6845175 MS.gene074110:CDS 35.0%
TAACTGCTGAATAACACTTC+CGG + chr6.1:6843764-6843783 None:intergenic 35.0%
TATGTGTTTGCTCTTCTTAC+TGG - chr6.1:6845001-6845020 MS.gene074110:CDS 35.0%
TCGATAATCACGAAGAATGA+TGG - chr6.1:6844167-6844186 MS.gene074110:CDS 35.0%
TTGTCGTTCATGCTTGTATA+TGG - chr6.1:6845401-6845420 MS.gene074110:intron 35.0%
! AAATCTAGCAGCTGATTCAT+TGG + chr6.1:6844828-6844847 None:intergenic 35.0%
! AATTAATGCAAGGGCTCTAA+AGG + chr6.1:6844216-6844235 None:intergenic 35.0%
! CTACCCTCTTTTGCATTTTA+AGG - chr6.1:6844454-6844473 MS.gene074110:intron 35.0%
! GTCATTAAGCATTTTAGGCA+TGG + chr6.1:6845645-6845664 None:intergenic 35.0%
! TTGGTGATAAGACTTAGATC+GGG + chr6.1:6844872-6844891 None:intergenic 35.0%
! TTTAGAGCCCTTGCATTAAT+TGG - chr6.1:6844215-6844234 MS.gene074110:CDS 35.0%
!! ATATCATACCGTGATTTGGT+TGG - chr6.1:6844674-6844693 MS.gene074110:intron 35.0%
!! CTTTGTTTGGGAGTTTTGAT+GGG - chr6.1:6843922-6843941 MS.gene074110:intron 35.0%
!! GTGGAGGATTTGTTAAAAGA+AGG + chr6.1:6845894-6845913 None:intergenic 35.0%
AAACTCCCAAACAAAGCCTA+AGG + chr6.1:6843918-6843937 None:intergenic 40.0%
AACATCTCACCCTCATCATT+AGG + chr6.1:6844761-6844780 None:intergenic 40.0%
AAGCAACACCAACCAAATCA+CGG + chr6.1:6844685-6844704 None:intergenic 40.0%
ACACGCAGATGGGATTTAAA+TGG - chr6.1:6845951-6845970 MS.gene074110:intron 40.0%
ACATAGATGAAGGATTCTGC+AGG + chr6.1:6844145-6844164 None:intergenic 40.0%
ACCAGCTCCAATTAATGCAA+GGG + chr6.1:6844225-6844244 None:intergenic 40.0%
AGAGAGGAGATAATGCTTAC+AGG + chr6.1:6843814-6843833 None:intergenic 40.0%
AGGGAAAGGTTGGGATTTAA+TGG - chr6.1:6843945-6843964 MS.gene074110:intron 40.0%
GCAGACAACTGACATTACTT+TGG + chr6.1:6844891-6844910 None:intergenic 40.0%
GGGAAAGGTTGGGATTTAAT+GGG - chr6.1:6843946-6843965 MS.gene074110:intron 40.0%
GTATTGTCACACTTGTGTAG+TGG + chr6.1:6845522-6845541 None:intergenic 40.0%
TATCAAAGACATGGAATGGC+AGG + chr6.1:6844657-6844676 None:intergenic 40.0%
TGACAATTAGATGGTCGAGA+AGG + chr6.1:6845458-6845477 None:intergenic 40.0%
TGACGAGCCTGAAAATACAA+AGG + chr6.1:6844968-6844987 None:intergenic 40.0%
TGCTTACAGGAGAATGAGAT+TGG + chr6.1:6843801-6843820 None:intergenic 40.0%
TGGGAGCTATCTTCTATTAC+AGG - chr6.1:6843965-6843984 MS.gene074110:CDS 40.0%
TGTTCTTAAGTCTCGCAAGT+TGG - chr6.1:6846033-6846052 MS.gene074110:CDS 40.0%
TTACACAGAAGCAGAGGTAA+AGG - chr6.1:6844703-6844722 MS.gene074110:intron 40.0%
! AAGCATTTTAGGCATGGCAA+TGG + chr6.1:6845639-6845658 None:intergenic 40.0%
! ATATGTAGTAGCGACTAGCT+TGG + chr6.1:6844427-6844446 None:intergenic 40.0%
! CTTGCAATCTGGGACTTAAA+TGG - chr6.1:6843889-6843908 MS.gene074110:intron 40.0%
! GCACCGTCATTAAGCATTTT+AGG + chr6.1:6845650-6845669 None:intergenic 40.0%
! GTTGATGGACCTAATGATGA+GGG - chr6.1:6844749-6844768 MS.gene074110:intron 40.0%
!! ACATGAAAGTACCTGAGCTT+CGG + chr6.1:6845702-6845721 None:intergenic 40.0%
!! GGCATCATTTAGTTTGTGGT+CGG - chr6.1:6845323-6845342 MS.gene074110:intron 40.0%
!! GGTGCTGTTGAATATGAAGA+TGG - chr6.1:6845665-6845684 MS.gene074110:intron 40.0%
!! TATGTAGTAGCGACTAGCTT+GGG + chr6.1:6844426-6844445 None:intergenic 40.0%
!! TATTTTCAGGCTCGTCACAA+TGG - chr6.1:6844971-6844990 MS.gene074110:CDS 40.0%
!! TCAGCTGCTAGATTTGCTAA+TGG - chr6.1:6844833-6844852 MS.gene074110:CDS 40.0%
!!! GCTTTGTTTGGGAGTTTTGA+TGG - chr6.1:6843921-6843940 MS.gene074110:intron 40.0%
AAAGCGGTCACTGAGTTTAC+CGG + chr6.1:6844792-6844811 None:intergenic 45.0%
AAGACTTAGATCGGGAGGAT+AGG + chr6.1:6844864-6844883 None:intergenic 45.0%
AATGGCTACTGAGATTGAGG+TGG - chr6.1:6844727-6844746 MS.gene074110:intron 45.0%
AATTTACCACAACACCGGCA+GGG + chr6.1:6845039-6845058 None:intergenic 45.0%
ACATTGCTTCTACACGCAGA+TGG - chr6.1:6845940-6845959 MS.gene074110:intron 45.0%
ACTGAGATTGAGGTGGTTGA+TGG - chr6.1:6844734-6844753 MS.gene074110:intron 45.0%
AGAAGCAGAGGTAAAGGCAA+TGG - chr6.1:6844709-6844728 MS.gene074110:intron 45.0%
ATGGCTCCACCAGGAAAATA+AGG + chr6.1:6845620-6845639 None:intergenic 45.0%
CACCAGCTCCAATTAATGCA+AGG + chr6.1:6844226-6844245 None:intergenic 45.0%
CATTGCTTCTACACGCAGAT+GGG - chr6.1:6845941-6845960 MS.gene074110:intron 45.0%
CTGCATACTATCGTCGTCTT+CGG - chr6.1:6846005-6846024 MS.gene074110:intron 45.0%
GATTCATTGGCATATGGCTG+AGG + chr6.1:6844815-6844834 None:intergenic 45.0%
GGGACTTAAATGGAGACCTT+AGG - chr6.1:6843899-6843918 MS.gene074110:intron 45.0%
GGTACTTTCATGTGTTGCAG+AGG - chr6.1:6845709-6845728 MS.gene074110:intron 45.0%
GTGATAAGACTTAGATCGGG+AGG + chr6.1:6844869-6844888 None:intergenic 45.0%
TGAGATGGAAGAGCGAAAAC+TGG - chr6.1:6845846-6845865 MS.gene074110:intron 45.0%
TTAATTGGAGCTGGTGTCTC+AGG - chr6.1:6844230-6844249 MS.gene074110:intron 45.0%
TTTATGAGCAGGATTCGTCG+TGG - chr6.1:6844602-6844621 MS.gene074110:intron 45.0%
TTTGATGGGAGGGAAAGGTT+GGG - chr6.1:6843936-6843955 MS.gene074110:intron 45.0%
! AGTTTTCGCTCTTCCATCTC+AGG + chr6.1:6845847-6845866 None:intergenic 45.0%
! ATCACGAAGAATGATGGTGC+TGG - chr6.1:6844173-6844192 MS.gene074110:CDS 45.0%
! GCAGCTGATTCATTGGCATA+TGG + chr6.1:6844821-6844840 None:intergenic 45.0%
! TGTTGCTTACACAGAAGCAG+AGG - chr6.1:6844697-6844716 MS.gene074110:intron 45.0%
! TTTTGATGGGAGGGAAAGGT+TGG - chr6.1:6843935-6843954 MS.gene074110:intron 45.0%
!! ATGTAGTAGCGACTAGCTTG+GGG + chr6.1:6844425-6844444 None:intergenic 45.0%
!! GCTGCTAGATTTGCTAATGG+AGG - chr6.1:6844836-6844855 MS.gene074110:intron 45.0%
!! GCTTCTGGTTCTTGCAATCT+GGG - chr6.1:6843879-6843898 MS.gene074110:intron 45.0%
!! GGAGACCTTAGGCTTTGTTT+GGG - chr6.1:6843910-6843929 MS.gene074110:intron 45.0%
!! GGTTGATGGACCTAATGATG+AGG - chr6.1:6844748-6844767 MS.gene074110:intron 45.0%
!! GTTTGGGAGTTTTGATGGGA+GGG - chr6.1:6843926-6843945 MS.gene074110:intron 45.0%
!! TGCTTCTGGTTCTTGCAATC+TGG - chr6.1:6843878-6843897 MS.gene074110:intron 45.0%
!! TGGAGACCTTAGGCTTTGTT+TGG - chr6.1:6843909-6843928 MS.gene074110:intron 45.0%
!! TGTTTGGGAGTTTTGATGGG+AGG - chr6.1:6843925-6843944 MS.gene074110:intron 45.0%
!!! GTCATTTTTGTCTTGGGCTG+CGG - chr6.1:6845819-6845838 MS.gene074110:intron 45.0%
AAGCGGTCACTGAGTTTACC+GGG + chr6.1:6844791-6844810 None:intergenic 50.0%
AAGCTATCCATGGCCTCATG+AGG - chr6.1:6844313-6844332 MS.gene074110:intron 50.0%
AGCTATCCATGGCCTCATGA+GGG - chr6.1:6844314-6844333 MS.gene074110:intron 50.0%
AGTTGTCTGAGTAGTGGTGC+GGG - chr6.1:6845162-6845181 MS.gene074110:CDS 50.0%
ATTTACCACAACACCGGCAG+GGG + chr6.1:6845038-6845057 None:intergenic 50.0%
CAGTTGTCTGAGTAGTGGTG+CGG - chr6.1:6845161-6845180 MS.gene074110:CDS 50.0%
CATACTATCGTCGTCTTCGG+TGG - chr6.1:6846008-6846027 MS.gene074110:intron 50.0%
GAATTTACCACAACACCGGC+AGG + chr6.1:6845040-6845059 None:intergenic 50.0%
GCCCTTGCATTAATTGGAGC+TGG - chr6.1:6844221-6844240 MS.gene074110:intron 50.0%
GGCAATGGCTACTGAGATTG+AGG - chr6.1:6844724-6844743 MS.gene074110:intron 50.0%
TCAGCTGATGAAGCTGAGCA+TGG - chr6.1:6844278-6844297 MS.gene074110:intron 50.0%
TCATGAGGCCATGGATAGCT+TGG + chr6.1:6844314-6844333 None:intergenic 50.0%
TGGCATATGGCTGAGGAAAG+CGG + chr6.1:6844808-6844827 None:intergenic 50.0%
! AGCTGGTGTCTCAGGTCTTT+TGG - chr6.1:6844238-6844257 MS.gene074110:intron 50.0%
! GCTGGTGTCTCAGGTCTTTT+GGG - chr6.1:6844239-6844258 MS.gene074110:intron 50.0%
!! GGAGTTTTGATGGGAGGGAA+AGG - chr6.1:6843931-6843950 MS.gene074110:intron 50.0%
AGTACCTGAGCTTCGGTAGC+AGG + chr6.1:6845695-6845714 None:intergenic 55.0%
ATGGATAGCTTGGAGCAGCC+AGG + chr6.1:6844304-6844323 None:intergenic 55.0%
GAACTGAGGATCCCCTCATG+AGG + chr6.1:6844329-6844348 None:intergenic 55.0%
GCTATCCATGGCCTCATGAG+GGG - chr6.1:6844315-6844334 MS.gene074110:intron 55.0%
GGTGAGATGTTTACGCGTCC+CGG - chr6.1:6844770-6844789 MS.gene074110:intron 55.0%
GTACCTGAGCTTCGGTAGCA+GGG + chr6.1:6845694-6845713 None:intergenic 55.0%
TACCTGAGCTTCGGTAGCAG+GGG + chr6.1:6845693-6845712 None:intergenic 55.0%
TGATGAAGCTGAGCATGGCC+TGG - chr6.1:6844283-6844302 MS.gene074110:intron 55.0%
TGGCTGCTCCAAGCTATCCA+TGG - chr6.1:6844303-6844322 MS.gene074110:intron 55.0%
TTTACCACAACACCGGCAGG+GGG + chr6.1:6845037-6845056 None:intergenic 55.0%
AGGATCCCCTCATGAGGCCA+TGG + chr6.1:6844323-6844342 None:intergenic 60.0%
TACCCCTGCTACCGAAGCTC+AGG - chr6.1:6845688-6845707 MS.gene074110:intron 60.0%
TTACCACAACACCGGCAGGG+GGG + chr6.1:6845036-6845055 None:intergenic 60.0%
TTGGGCTGCGGAACCTGAGA+TGG - chr6.1:6845831-6845850 MS.gene074110:intron 60.0%
GGCATGGCAATGGCTCCACC+AGG + chr6.1:6845629-6845648 None:intergenic 65.0%
GGTTATCGTGACCCCCCTGC+CGG - chr6.1:6845022-6845041 MS.gene074110:CDS 65.0%
! TGACCCCCCTGCCGGTGTTG+TGG - chr6.1:6845030-6845049 MS.gene074110:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 6843757 6846075 6843757 ID=MS.gene074110
chr6.1 mRNA 6843757 6846075 6843757 ID=MS.gene074110.t1;Parent=MS.gene074110
chr6.1 exon 6846019 6846075 6846019 ID=MS.gene074110.t1.exon1;Parent=MS.gene074110.t1
chr6.1 CDS 6846019 6846075 6846019 ID=cds.MS.gene074110.t1;Parent=MS.gene074110.t1
chr6.1 exon 6845469 6845683 6845469 ID=MS.gene074110.t1.exon2;Parent=MS.gene074110.t1
chr6.1 CDS 6845469 6845683 6845469 ID=cds.MS.gene074110.t1;Parent=MS.gene074110.t1
chr6.1 exon 6844940 6845219 6844940 ID=MS.gene074110.t1.exon3;Parent=MS.gene074110.t1
chr6.1 CDS 6844940 6845219 6844940 ID=cds.MS.gene074110.t1;Parent=MS.gene074110.t1
chr6.1 exon 6844781 6844852 6844781 ID=MS.gene074110.t1.exon4;Parent=MS.gene074110.t1
chr6.1 CDS 6844781 6844852 6844781 ID=cds.MS.gene074110.t1;Parent=MS.gene074110.t1
chr6.1 exon 6844123 6844239 6844123 ID=MS.gene074110.t1.exon5;Parent=MS.gene074110.t1
chr6.1 CDS 6844123 6844239 6844123 ID=cds.MS.gene074110.t1;Parent=MS.gene074110.t1
chr6.1 exon 6843965 6844030 6843965 ID=MS.gene074110.t1.exon6;Parent=MS.gene074110.t1
chr6.1 CDS 6843965 6844030 6843965 ID=cds.MS.gene074110.t1;Parent=MS.gene074110.t1
chr6.1 exon 6843757 6843873 6843757 ID=MS.gene074110.t1.exon7;Parent=MS.gene074110.t1
chr6.1 CDS 6843757 6843873 6843757 ID=cds.MS.gene074110.t1;Parent=MS.gene074110.t1
Gene Sequence

>MS.gene074110

ATGGCCGGAAGTGTTATTCAGCAGTTATTAAGGAGGAAACTCCAATCTCATTCTCCTGTAAGCATTATCTCCTCTCTTCGTGATAATTTTCATGTTTTTTTTTTTTTAATATTTAGGACTATGCTTCTGGTTCTTGCAATCTGGGACTTAAATGGAGACCTTAGGCTTTGTTTGGGAGTTTTGATGGGAGGGAAAGGTTGGGATTTAATGGGAGCTATCTTCTATTACAGGCTTAGGTCATTGTTTGATATAGGGAAAAGCCATTATATGGACTATTATGGTGAAAATCATACATTTTCATGTCATAAAACTTCCATGAGTTTATAACAATTTTCCTTCCATGGAACAATCAAATTGTCTGTTGCTAATGGCTTCTGATATGCTTCCTGCAGAATCCTTCATCTATGTCATCGATAATCACGAAGAATGATGGTGCTGGTTCTACGAGCAGCAGATCCTTTAGAGCCCTTGCATTAATTGGAGCTGGTGTCTCAGGTCTTTTGGGTTTTGCAACGACAGCATCAGCTGATGAAGCTGAGCATGGCCTGGCTGCTCCAAGCTATCCATGGCCTCATGAGGGGATCCTCAGTTCATATGATCATGCTTCGTAAGTTTGAGCTGAGTTTTCCCTATATTTTCATGTTTTTGGGTTCAGCGATATCATGCCCCAAGCTAGTCGCTACTACATATACTAAAACTACCCTCTTTTGCATTTTAAGGTGATTTGCAAATAGTTGTTAGTTGTAAGTACATTTTTAATTGGACTTCTTTCATTTATATTACTAAATGTCATTTTATCTTAGAAGAACCATGATTTCTTTTTTCTAGACTGTAATTTTCTGAATTTTATGAGCAGGATTCGTCGTGGTCATCAAGTTTATATGCAAGTCTGTGCTTCCTGCCATTCCATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTACACAGAAGCAGAGGTAAAGGCAATGGCTACTGAGATTGAGGTGGTTGATGGACCTAATGATGAGGGTGAGATGTTTACGCGTCCCGGTAAACTCAGTGACCGCTTTCCTCAGCCATATGCCAATGAATCAGCTGCTAGATTTGCTAATGGAGGAGCCTATCCTCCCGATCTAAGTCTTATCACCAAAGTAATGTCAGTTGTCTGCTAGTAACTAAGATTTTCTGTTTTATGCGTAGCAGAAATATCTGTAAGTAGTTAACCTTTGTATTTTCAGGCTCGTCACAATGGTCAGAACTATGTGTTTGCTCTTCTTACTGGTTATCGTGACCCCCCTGCCGGTGTTGTGGTAAATTCTCTTTACATTGATTTTACAGCTAAACTCTACTTATCAAAGTGTTTGCAGAAGTTGATATATACTGGGCAGTTCAGACCCAAAACAAACCAGATTTTTAAATCAGTTGTCTGAGTAGTGGTGCGGGTTTGAAATCTGTGCAAGCATAGTCAACAAGTGTCAAATGAAGTTTTTCTTTTTCTTGTACTCCAATAAATGAAAATATGCATGCACCTAATGTGGAATAGCACAATTTGTTATTAGATATGGTAAATAAAGACATTATGGCATCATTTAGTTTGTGGTCGGCAACACCTAATGAGAATGAATATGGTGGCGAATCTGTCCTTACATGTGACTTGAATTGTCGTTCATGCTTGTATATGGATATTAACAATTAGTGAAGAACTTTATTATACCTTCTCGACCATCTAATTGTCATATCAATTCTAAATATCACATTCAAGTTGATAATTATTTTGCCACTACACAAGTGTGACAATACAGTGCTTACATCAGATTTTTGTGAATGGTAATCTTCCAAATTATAATGCAGATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGAGCCATTGCCATGCCTAAAATGCTTAATGACGGTGCTGTTGAATATGAAGATGGTACCCCTGCTACCGAAGCTCAGGTACTTTCATGTGTTGCAGAGGATTTCATTTAATAAATTTTTTCATAGTTGATCATAAACATCATTTTTATTCTTTTATTTTGTTGTTGCAGATGGGGAAAGATGTTGTGTCATTTTTGTCTTGGGCTGCGGAACCTGAGATGGAAGAGCGAAAACTGGTTTGTTTCCTCTATTATTCTATCCTTCTTTTAACAAATCCTCCACTTGAGAAAATATATGATTTTCTAAGAACATTGCTTCTACACGCAGATGGGATTTAAATGGATATTTGTACTTTCATTGGCATTACTTCAAGCTGCATACTATCGTCGTCTTCGGTGGTCTGTTCTTAAGTCTCGCAAGTTGGTTCTTGATGTTGTCAACTAA
Protein sequence

>MS.gene074110.t1

MAGSVIQQLLRRKLQSHSPNPSSMSSIITKNDGAGSTSSRSFRALALIGAGVSGLLGFATTASADEAEHGLAAPSYPWPHEGILSSYDHASIRRGHQVYMQVCASCHSMSLISYRDLVGVAYTEAEVKAMATEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVVIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN