Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55480.t1 | XP_003618807.1 | 99.3 | 306 | 1 | 1 | 1 | 305 | 1 | 306 | 2.50E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55480.t1 | Q9LK29 | 87.6 | 306 | 37 | 1 | 1 | 305 | 2 | 307 | 2.0e-150 | 533.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55480.t1 | G7KN93 | 99.3 | 306 | 1 | 1 | 1 | 305 | 1 | 306 | 1.8e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050156 | MS.gene55480 | -0.801846 | 7.43E-49 | -1.69E-46 |
| MS.gene051924 | MS.gene55480 | 0.813932 | 1.99E-51 | -1.69E-46 |
| MS.gene051926 | MS.gene55480 | 0.820886 | 5.41E-53 | -1.69E-46 |
| MS.gene052190 | MS.gene55480 | -0.811251 | 7.68E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene55480 | 0.808228 | 3.43E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene55480 | -0.811773 | 5.92E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene55480 | 0.833399 | 5.45E-56 | -1.69E-46 |
| MS.gene054559 | MS.gene55480 | -0.817906 | 2.59E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene55480 | -0.826354 | 2.84E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene55480 | -0.810841 | 9.43E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene55480 | 0.808142 | 3.58E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene55480 | -0.805243 | 1.47E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene55480 | 0.80492 | 1.71E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene55480 | 0.823205 | 1.57E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47123 | MS.gene55480 | PPI |
| MS.gene55480 | MS.gene024087 | PPI |
| MS.gene55480 | MS.gene039438 | PPI |
| MS.gene55480 | MS.gene000289 | PPI |
| MS.gene55480 | MS.gene024287 | PPI |
| MS.gene024731 | MS.gene55480 | PPI |
| MS.gene55480 | MS.gene058545 | PPI |
| MS.gene52332 | MS.gene55480 | PPI |
| MS.gene52274 | MS.gene55480 | PPI |
| MS.gene55480 | MS.gene074111 | PPI |
| MS.gene55480 | MS.gene73382 | PPI |
| MS.gene074110 | MS.gene55480 | PPI |
| MS.gene21918 | MS.gene55480 | PPI |
| MS.gene55480 | MS.gene47121 | PPI |
| MS.gene55480 | MS.gene21707 | PPI |
| MS.gene55480 | MS.gene033723 | PPI |
| MS.gene55480 | MS.gene55486 | PPI |
| MS.gene55480 | MS.gene033531 | PPI |
| MS.gene55480 | MS.gene058150 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55480.t1 | MTR_6g023230 | 99.346 | 306 | 1 | 1 | 1 | 305 | 1 | 306 | 0.0 | 624 |
| MS.gene55480.t1 | MTR_6g023290 | 92.834 | 307 | 20 | 1 | 1 | 305 | 1 | 307 | 0.0 | 590 |
| MS.gene55480.t1 | MTR_6g023280 | 78.947 | 57 | 12 | 0 | 130 | 186 | 2 | 58 | 2.87e-27 | 101 |
| MS.gene55480.t1 | MTR_6g023270 | 48.696 | 115 | 36 | 2 | 18 | 115 | 33 | 141 | 8.22e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55480.t1 | AT3G27240 | 87.582 | 306 | 37 | 1 | 1 | 305 | 2 | 307 | 0.0 | 509 |
| MS.gene55480.t1 | AT5G40810 | 86.601 | 306 | 40 | 1 | 1 | 305 | 2 | 307 | 0.0 | 508 |
| MS.gene55480.t1 | AT5G40810 | 92.692 | 260 | 19 | 0 | 46 | 305 | 1 | 260 | 2.66e-168 | 467 |
Find 86 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGGTGTCTCAGGTCTTT+TGG | 0.163609 | 6.2:-16582101 | MS.gene55480:CDS |
| TTAAGAGCCCTTGCTTTAAT+AGG | 0.244645 | 6.2:-16582124 | MS.gene55480:CDS |
| ACTTGCAGATGGGATTTAAA+TGG | 0.252277 | 6.2:-16579706 | MS.gene55480:intron |
| ATGGATATTTGTACTTTCAT+TGG | 0.329694 | 6.2:-16579687 | MS.gene55480:CDS |
| ATGGCTCCACCAGGGAAATA+AGG | 0.352039 | 6.2:+16580054 | None:intergenic |
| TATTAAAGCAAGGGCTCTTA+AGG | 0.362156 | 6.2:+16582126 | None:intergenic |
| AACATCTCACCCTCATCATT+GGG | 0.377350 | 6.2:+16580960 | None:intergenic |
| GTCTCAAAGAAAGATGGTTC+TGG | 0.397685 | 6.2:-16582166 | MS.gene55480:CDS |
| TTCTTACCAGAGAATGAGAT+TGG | 0.400483 | 6.2:+16584319 | None:intergenic |
| TTAATAGGAGCTGGTGTCTC+AGG | 0.408185 | 6.2:-16582109 | MS.gene55480:CDS |
| AAACATCTCACCCTCATCAT+TGG | 0.411590 | 6.2:+16580959 | None:intergenic |
| TTTGATATCATACCGTGATT+TGG | 0.414012 | 6.2:-16581048 | MS.gene55480:CDS |
| CATTACAATCCTTATTTCCC+TGG | 0.414300 | 6.2:-16580063 | MS.gene55480:CDS |
| GCAGCTGATTCATTTGCATA+TGG | 0.415455 | 6.2:+16580900 | None:intergenic |
| GCGCCATCATTAAGCATCTT+AGG | 0.416554 | 6.2:+16580024 | None:intergenic |
| TTTGAGACAATGGATGATAC+AGG | 0.432481 | 6.2:+16582181 | None:intergenic |
| TATGTGTTTGCTCTCCTAAC+CGG | 0.442825 | 6.2:-16580721 | MS.gene55480:CDS |
| AGTACCTGAGCTTCGGTAGC+AGG | 0.443562 | 6.2:+16579979 | None:intergenic |
| CCGCATACTATCGTCGTCTT+CGG | 0.462299 | 6.2:-16579652 | MS.gene55480:CDS |
| GAAACTCCAATCTCATTCTC+TGG | 0.472075 | 6.2:-16584325 | MS.gene55480:intron |
| AAAGATGGTTCTGGCTCTAC+GGG | 0.472501 | 6.2:-16582157 | MS.gene55480:CDS |
| GAAAGATGGTTCTGGCTCTA+CGG | 0.474284 | 6.2:-16582158 | MS.gene55480:CDS |
| TGAGATGGAAGAGCGAAAAC+TGG | 0.475157 | 6.2:-16579804 | MS.gene55480:intron |
| TCAGCTGCTAGGTTTGCTAA+TGG | 0.483837 | 6.2:-16580885 | MS.gene55480:CDS |
| GCCCTTGCTTTAATAGGAGC+TGG | 0.484530 | 6.2:-16582118 | MS.gene55480:CDS |
| ACCATCTTTCTTTGAGACAA+TGG | 0.495284 | 6.2:+16582171 | None:intergenic |
| AAGCGATCACTGAGTTTACC+AGG | 0.500224 | 6.2:+16580930 | None:intergenic |
| TATCAAAGACATGGAATGGC+AGG | 0.507429 | 6.2:+16581064 | None:intergenic |
| GGCATGGCAATGGCTCCACC+AGG | 0.514815 | 6.2:+16580045 | None:intergenic |
| TTGGGCAGCGGAACCTGAGA+TGG | 0.517204 | 6.2:-16579819 | MS.gene55480:CDS |
| TTGGTAATAAGACTTAGATC+AGG | 0.519781 | 6.2:+16580849 | None:intergenic |
| ACATAAAAGTACCTGAGCTT+CGG | 0.521841 | 6.2:+16579972 | None:intergenic |
| AGAAGAAGAGGTAAAGGCTA+TGG | 0.524696 | 6.2:-16581009 | MS.gene55480:CDS |
| TCCATTGTCTCAAAGAAAGA+TGG | 0.528905 | 6.2:-16582172 | MS.gene55480:CDS |
| GTACCTGAGCTTCGGTAGCA+GGG | 0.529146 | 6.2:+16579980 | None:intergenic |
| AGGATGCCCTCGTGAGGCCA+TGG | 0.530626 | 6.2:+16582019 | None:intergenic |
| GGCTATGGCAGCTGAGATTG+AGG | 0.530766 | 6.2:-16580994 | MS.gene55480:CDS |
| ATGATATCAAAGACATGGAA+TGG | 0.537539 | 6.2:+16581060 | None:intergenic |
| GGTGAGATGTTTACACGCCC+TGG | 0.539258 | 6.2:-16580948 | MS.gene55480:CDS |
| GCTGAGATTGAGGTGGAAGA+TGG | 0.539723 | 6.2:-16580984 | MS.gene55480:CDS |
| GATTCATTTGCATATGGCTG+AGG | 0.541130 | 6.2:+16580906 | None:intergenic |
| TACCCCTGCTACCGAAGCTC+AGG | 0.543312 | 6.2:-16579983 | MS.gene55480:intron |
| ATAATAATGTAGATCAGAGA+AGG | 0.546231 | 6.2:-16580090 | MS.gene55480:intron |
| ACAGTCTGAACAGAGATGGC+TGG | 0.550214 | 6.2:-16584375 | None:intergenic |
| TTACACAGAAGAAGAGGTAA+AGG | 0.552168 | 6.2:-16581015 | MS.gene55480:CDS |
| GAATATACCGAAATACCAGC+AGG | 0.552545 | 6.2:+16580685 | None:intergenic |
| TGTTCTCAAGTCTCGCAAGT+TGG | 0.554401 | 6.2:-16579624 | MS.gene55480:CDS |
| TACAATCCTTATTTCCCTGG+TGG | 0.554688 | 6.2:-16580060 | MS.gene55480:CDS |
| TCGCATCTCCACACTATCCA+TGG | 0.559094 | 6.2:-16582036 | MS.gene55480:CDS |
| AAGACTTAGATCAGGAGGAT+AGG | 0.563590 | 6.2:+16580857 | None:intergenic |
| ATCATTAAGCATCTTAGGCA+TGG | 0.575465 | 6.2:+16580029 | None:intergenic |
| ATGCAAATGAATCAGCTGCT+AGG | 0.576296 | 6.2:-16580896 | MS.gene55480:CDS |
| CACCAGCTCCTATTAAAGCA+AGG | 0.578592 | 6.2:+16582116 | None:intergenic |
| TCAGCTGATGAAGCTGAGCA+TGG | 0.598104 | 6.2:-16582061 | MS.gene55480:CDS |
| CATACTATCGTCGTCTTCGG+TGG | 0.604083 | 6.2:-16579649 | MS.gene55480:CDS |
| ACCAGCTCCTATTAAAGCAA+GGG | 0.604841 | 6.2:+16582117 | None:intergenic |
| GTAATAAGACTTAGATCAGG+AGG | 0.606361 | 6.2:+16580852 | None:intergenic |
| TGTTGCTTACACAGAAGAAG+AGG | 0.612813 | 6.2:-16581021 | MS.gene55480:CDS |
| TCGTGAGGCCATGGATAGTG+TGG | 0.617512 | 6.2:+16582028 | None:intergenic |
| ATATCATACCGTGATTTGGT+TGG | 0.618625 | 6.2:-16581044 | MS.gene55480:CDS |
| AAGCATCTTAGGCATGGCAA+TGG | 0.619124 | 6.2:+16580035 | None:intergenic |
| TACCTGAGCTTCGGTAGCAG+GGG | 0.625058 | 6.2:+16579981 | None:intergenic |
| GGCGCTGTTGAATATGAAGA+TGG | 0.625884 | 6.2:-16580006 | MS.gene55480:CDS |
| ACGGTATGATATCAAAGACA+TGG | 0.629932 | 6.2:+16581055 | None:intergenic |
| ATGCCTAAGATGCTTAATGA+TGG | 0.630986 | 6.2:-16580027 | MS.gene55480:CDS |
| ACACTATCCATGGCCTCACG+AGG | 0.631293 | 6.2:-16582026 | MS.gene55480:CDS |
| GGAAGATGGCCCCAATGATG+AGG | 0.644119 | 6.2:-16580970 | MS.gene55480:CDS |
| GCTGCTAGGTTTGCTAATGG+AGG | 0.646946 | 6.2:-16580882 | MS.gene55480:CDS |
| AATATACCGAAATACCAGCA+GGG | 0.651584 | 6.2:+16580686 | None:intergenic |
| ATATACCGAAATACCAGCAG+GGG | 0.655558 | 6.2:+16580687 | None:intergenic |
| AAGCAACACCAACCAAATCA+CGG | 0.657890 | 6.2:+16581036 | None:intergenic |
| ATGGATAGTGTGGAGATGCG+AGG | 0.659382 | 6.2:+16582038 | None:intergenic |
| GTCTGAACAGAGATGGCTGG+AGG | 0.660770 | 6.2:-16584372 | None:intergenic |
| GAAGATGGCCCCAATGATGA+GGG | 0.664245 | 6.2:-16580969 | MS.gene55480:CDS |
| ACATCTCACCCTCATCATTG+GGG | 0.664508 | 6.2:+16580961 | None:intergenic |
| CACTATCCATGGCCTCACGA+GGG | 0.665959 | 6.2:-16582025 | MS.gene55480:CDS |
| GAACTGAGGATGCCCTCGTG+AGG | 0.671560 | 6.2:+16582013 | None:intergenic |
| GTGTATAAACTTGATGACCA+CGG | 0.686663 | 6.2:+16581099 | None:intergenic |
| TATACCGAAATACCAGCAGG+GGG | 0.699409 | 6.2:+16580688 | None:intergenic |
| AAGCGTGATCATATGAACTG+AGG | 0.699683 | 6.2:+16581999 | None:intergenic |
| TATGGCAGCTGAGATTGAGG+TGG | 0.700807 | 6.2:-16580991 | MS.gene55480:CDS |
| GCATGGCAATGGCTCCACCA+GGG | 0.715609 | 6.2:+16580046 | None:intergenic |
| AGCGATCACTGAGTTTACCA+GGG | 0.720400 | 6.2:+16580931 | None:intergenic |
| CCGAAGACGACGATAGTATG+CGG | 0.728381 | 6.2:+16579652 | None:intergenic |
| TGTATGAACAGGATTCGCCG+TGG | 0.760844 | 6.2:-16581116 | MS.gene55480:intron |
| ATACCGAAATACCAGCAGGG+GGG | 0.810875 | 6.2:+16580689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATTATTTATAGAAATAAA+AGG | + | chr6.2:16582682-16582701 | None:intergenic | 10.0% |
| !!! | CTAATTTTATAAGTAAATAT+GGG | + | chr6.2:16580836-16580855 | None:intergenic | 10.0% |
| !! | AAAATAAATTCGAAAATGAA+AGG | - | chr6.2:16580153-16580172 | MS.gene55480:intron | 15.0% |
| !! | CCATATTTACTTATAAAATT+AGG | - | chr6.2:16580834-16580853 | MS.gene55480:intron | 15.0% |
| !! | TATATATTGAAATATAGACT+TGG | + | chr6.2:16581115-16581134 | None:intergenic | 15.0% |
| !!! | CATTTAAAAGAACAATTTTT+TGG | + | chr6.2:16583410-16583429 | None:intergenic | 15.0% |
| !!! | CCTAATTTTATAAGTAAATA+TGG | + | chr6.2:16580837-16580856 | None:intergenic | 15.0% |
| !!! | GCATTAAATATTTTACAAAT+TGG | + | chr6.2:16583500-16583519 | None:intergenic | 15.0% |
| !! | AATAATAAACTAGTAATGCA+AGG | + | chr6.2:16580044-16580063 | None:intergenic | 20.0% |
| !! | AGAAGAAATTTAAACTCTAA+GGG | + | chr6.2:16581306-16581325 | None:intergenic | 20.0% |
| !! | AGAATAAAACAAAGCAATAA+AGG | + | chr6.2:16582715-16582734 | None:intergenic | 20.0% |
| !! | AGTTCAGATTAAATATATGA+TGG | + | chr6.2:16582774-16582793 | None:intergenic | 20.0% |
| !! | ATAAAATGCTAGATTAATGA+AGG | + | chr6.2:16580655-16580674 | None:intergenic | 20.0% |
| !! | ATACCTATTTACAAGAATAA+AGG | + | chr6.2:16580733-16580752 | None:intergenic | 20.0% |
| !! | ATTAGGTTCTATCATTTAAT+GGG | - | chr6.2:16580268-16580287 | MS.gene55480:intron | 20.0% |
| !! | ATTTGATGTTTATGTAATCT+GGG | - | chr6.2:16582735-16582754 | MS.gene55480:intron | 20.0% |
| !! | GAAAACAAAACAAAACAATT+TGG | + | chr6.2:16580313-16580332 | None:intergenic | 20.0% |
| !! | GCTGAAAAAAATTAAAACTA+GGG | + | chr6.2:16582151-16582170 | None:intergenic | 20.0% |
| !! | TAAGAAAATTCTAGATTAGT+GGG | + | chr6.2:16580771-16580790 | None:intergenic | 20.0% |
| !! | TAGAAGAAATTTAAACTCTA+AGG | + | chr6.2:16581307-16581326 | None:intergenic | 20.0% |
| !! | TATTGAAAGAAAATCATCTA+TGG | + | chr6.2:16583549-16583568 | None:intergenic | 20.0% |
| !! | TATTTGATGTTTATGTAATC+TGG | - | chr6.2:16582734-16582753 | MS.gene55480:intron | 20.0% |
| !! | TTCAATATAATACTTTCATG+TGG | - | chr6.2:16583605-16583624 | MS.gene55480:intron | 20.0% |
| !! | TTCATACAATATAAAACCTA+AGG | + | chr6.2:16583169-16583188 | None:intergenic | 20.0% |
| !!! | ATTTTAAATCCCATAAGATA+AGG | + | chr6.2:16579725-16579744 | None:intergenic | 20.0% |
| !!! | CTGTATTTAGTCTTAAAAAA+AGG | + | chr6.2:16583314-16583333 | None:intergenic | 20.0% |
| ! | AAATACTCTCACAAGTATAA+AGG | + | chr6.2:16579692-16579711 | None:intergenic | 25.0% |
| ! | AAATCATCTATGGTATCAAA+AGG | + | chr6.2:16583539-16583558 | None:intergenic | 25.0% |
| ! | AATTAGAAAAAGACATGATC+AGG | + | chr6.2:16581739-16581758 | None:intergenic | 25.0% |
| ! | ATAATAATGTAGATCAGAGA+AGG | - | chr6.2:16583874-16583893 | MS.gene55480:intron | 25.0% |
| ! | ATATAATACTTTCATGTGGA+TGG | - | chr6.2:16583609-16583628 | MS.gene55480:intron | 25.0% |
| ! | ATCTAACATGGTTAAAATCT+TGG | - | chr6.2:16582222-16582241 | MS.gene55480:intron | 25.0% |
| ! | ATGGATATTTGTACTTTCAT+TGG | - | chr6.2:16584277-16584296 | MS.gene55480:intron | 25.0% |
| ! | ATTATATCTATGACTGTTAG+AGG | + | chr6.2:16580015-16580034 | None:intergenic | 25.0% |
| ! | ATTTAAAAACCAAACATGTG+CGG | + | chr6.2:16580971-16580990 | None:intergenic | 25.0% |
| ! | CAATTTATCAGTAAAACTGT+TGG | - | chr6.2:16579905-16579924 | MS.gene55480:intron | 25.0% |
| ! | CATTAAATGATAGAACCTAA+TGG | + | chr6.2:16580269-16580288 | None:intergenic | 25.0% |
| ! | CATTAGGTTCTATCATTTAA+TGG | - | chr6.2:16580267-16580286 | MS.gene55480:intron | 25.0% |
| ! | CTAAGAAAATTCTAGATTAG+TGG | + | chr6.2:16580772-16580791 | None:intergenic | 25.0% |
| ! | GGCTGAAAAAAATTAAAACT+AGG | + | chr6.2:16582152-16582171 | None:intergenic | 25.0% |
| ! | GTACGTTTAAGCAAAATAAA+AGG | + | chr6.2:16582034-16582053 | None:intergenic | 25.0% |
| ! | TCAGATTAAATATATGATGG+AGG | + | chr6.2:16582771-16582790 | None:intergenic | 25.0% |
| ! | TCTCCTTTATTCTTGTAAAT+AGG | - | chr6.2:16580727-16580746 | MS.gene55480:CDS | 25.0% |
| ! | TGTCTTAATTTACTCTCAAA+TGG | - | chr6.2:16580372-16580391 | MS.gene55480:intron | 25.0% |
| ! | TTAAGAGAAATAGAGAAAGT+GGG | - | chr6.2:16582507-16582526 | MS.gene55480:intron | 25.0% |
| !! | ATAGTCATTGATTGTCATAT+TGG | - | chr6.2:16581623-16581642 | MS.gene55480:intron | 25.0% |
| !! | ATTAAAATTTTCAGTCAGAG+AGG | + | chr6.2:16580908-16580927 | None:intergenic | 25.0% |
| !! | CAACAGTTTTACTGATAAAT+TGG | + | chr6.2:16579907-16579926 | None:intergenic | 25.0% |
| !! | TTATTTAGGGTAACTTTAGA+TGG | - | chr6.2:16581502-16581521 | MS.gene55480:intron | 25.0% |
| !! | TTGTTCTTTTAAATGTTGTG+TGG | - | chr6.2:16583415-16583434 | MS.gene55480:intron | 25.0% |
| !!! | ATTTTGTTATACATATGCGA+GGG | - | chr6.2:16579785-16579804 | MS.gene55480:intron | 25.0% |
| !!! | GTACTTTACTAGTTTTACAT+AGG | + | chr6.2:16580931-16580950 | None:intergenic | 25.0% |
| !!! | GTGTTTTTCAACAATTATTG+AGG | - | chr6.2:16579614-16579633 | MS.gene55480:CDS | 25.0% |
| !!! | GTTTTAATTTTTTTCAGCCT+TGG | - | chr6.2:16582153-16582172 | MS.gene55480:CDS | 25.0% |
| !!! | TTTTATTTGTTGTTGCAGAT+GGG | - | chr6.2:16584098-16584117 | MS.gene55480:intron | 25.0% |
| !!! | TTTTTCAACAATTATTGAGG+AGG | - | chr6.2:16579617-16579636 | MS.gene55480:CDS | 25.0% |
| AAGAATGCAAGTTACTGTAA+TGG | + | chr6.2:16583337-16583356 | None:intergenic | 30.0% | |
| ACCCTAAATAATGATTGATG+AGG | + | chr6.2:16581493-16581512 | None:intergenic | 30.0% | |
| ACGATTATTCTGGATTGTTA+TGG | - | chr6.2:16581647-16581666 | MS.gene55480:intron | 30.0% | |
| AGAGAACATTAGTTCCTTTA+AGG | - | chr6.2:16582612-16582631 | MS.gene55480:intron | 30.0% | |
| AGGTAGTTGAATAAGATCAT+GGG | + | chr6.2:16580797-16580816 | None:intergenic | 30.0% | |
| ATATGTTTGTAGTTGAGAGA+AGG | - | chr6.2:16580109-16580128 | MS.gene55480:intron | 30.0% | |
| ATGATATCAAAGACATGGAA+TGG | + | chr6.2:16582907-16582926 | None:intergenic | 30.0% | |
| ATTATTCTGGATTGTTATGG+TGG | - | chr6.2:16581650-16581669 | MS.gene55480:intron | 30.0% | |
| CCCTAAATAATGATTGATGA+GGG | + | chr6.2:16581492-16581511 | None:intergenic | 30.0% | |
| CCCTCATCAATCATTATTTA+GGG | - | chr6.2:16581489-16581508 | MS.gene55480:intron | 30.0% | |
| CTATAAGCCTATAATGAAGA+TGG | + | chr6.2:16581607-16581626 | None:intergenic | 30.0% | |
| CTGATAGAAGACAAAAACAA+AGG | + | chr6.2:16584193-16584212 | None:intergenic | 30.0% | |
| GAAACATTAATATTGTGTGC+TGG | + | chr6.2:16583652-16583671 | None:intergenic | 30.0% | |
| GAATTAAGCTTGATCATAGT+TGG | + | chr6.2:16580216-16580235 | None:intergenic | 30.0% | |
| GCAGAAAATTGACATTACTT+TGG | + | chr6.2:16583137-16583156 | None:intergenic | 30.0% | |
| GTTAAGAGAAATAGAGAAAG+TGG | - | chr6.2:16582506-16582525 | MS.gene55480:intron | 30.0% | |
| GTTCTATCATTTAATGGGAT+TGG | - | chr6.2:16580273-16580292 | MS.gene55480:intron | 30.0% | |
| TAAAGGAGACATAATGTTGT+TGG | + | chr6.2:16580716-16580735 | None:intergenic | 30.0% | |
| TAAGCGATGTGTAAGAAAAT+CGG | + | chr6.2:16584236-16584255 | None:intergenic | 30.0% | |
| TAGAACTAAATCTCACATCT+TGG | - | chr6.2:16581035-16581054 | MS.gene55480:CDS | 30.0% | |
| TAGGTAGTTGAATAAGATCA+TGG | + | chr6.2:16580798-16580817 | None:intergenic | 30.0% | |
| TCAACAAGCATTATAAGACA+AGG | + | chr6.2:16579868-16579887 | None:intergenic | 30.0% | |
| TCATATTGGAACGATTATTC+TGG | - | chr6.2:16581637-16581656 | MS.gene55480:intron | 30.0% | |
| TCCCTCATCAATCATTATTT+AGG | - | chr6.2:16581488-16581507 | MS.gene55480:intron | 30.0% | |
| TCTACAGGCTTCTAAATAAA+GGG | + | chr6.2:16581019-16581038 | None:intergenic | 30.0% | |
| TTCTACAGGCTTCTAAATAA+AGG | + | chr6.2:16581020-16581039 | None:intergenic | 30.0% | |
| TTGACAAGAATACAAAGTTG+AGG | + | chr6.2:16583762-16583781 | None:intergenic | 30.0% | |
| TTGTAGAGATGCAAATCATA+AGG | + | chr6.2:16580459-16580478 | None:intergenic | 30.0% | |
| TTGTCAATCATGCACATATA+TGG | - | chr6.2:16583702-16583721 | MS.gene55480:intron | 30.0% | |
| TTTCTGCTAGTAATTTCCTT+AGG | - | chr6.2:16583150-16583169 | MS.gene55480:intron | 30.0% | |
| TTTGATATCATACCGTGATT+TGG | - | chr6.2:16582916-16582935 | MS.gene55480:intron | 30.0% | |
| ! | AAATCAGAAGTTGTCTTTTC+TGG | - | chr6.2:16579808-16579827 | MS.gene55480:CDS | 30.0% |
| ! | AATTTTGCAAAAGAGTTTCC+AGG | - | chr6.2:16579985-16580004 | MS.gene55480:CDS | 30.0% |
| ! | ATAGGACTCATCCTATTTTA+AGG | - | chr6.2:16582345-16582364 | MS.gene55480:intron | 30.0% |
| ! | ATTATGCTTTCAGTGTTTTG+AGG | - | chr6.2:16582192-16582211 | MS.gene55480:intron | 30.0% |
| ! | ATTTTACAAATTGGTGTGCA+GGG | + | chr6.2:16583491-16583510 | None:intergenic | 30.0% |
| ! | CAAAACACTGAAAGCATAAT+AGG | + | chr6.2:16582192-16582211 | None:intergenic | 30.0% |
| ! | GAATTTGTGTTATTGTTGAG+TGG | - | chr6.2:16582546-16582565 | MS.gene55480:intron | 30.0% |
| ! | GATTTAAAATTGAGACCCTT+AGG | - | chr6.2:16579735-16579754 | MS.gene55480:intron | 30.0% |
| ! | TATTTTACAAATTGGTGTGC+AGG | + | chr6.2:16583492-16583511 | None:intergenic | 30.0% |
| ! | TGTTTCTGACCTTATCTTAT+GGG | - | chr6.2:16579713-16579732 | MS.gene55480:intron | 30.0% |
| ! | TTGGTAATAAGACTTAGATC+AGG | + | chr6.2:16583118-16583137 | None:intergenic | 30.0% |
| !! | CAAATCATAAGGTATTGCTA+CGG | + | chr6.2:16580448-16580467 | None:intergenic | 30.0% |
| !! | GATTTTGTTATACATATGCG+AGG | - | chr6.2:16579784-16579803 | MS.gene55480:intron | 30.0% |
| !! | TATAAAGGCATCATGAATAG+AGG | + | chr6.2:16579677-16579696 | None:intergenic | 30.0% |
| !! | TGCTCTTGATCTTTTGTTTA+TGG | - | chr6.2:16583840-16583859 | MS.gene55480:intron | 30.0% |
| !! | TTAGCTGATTTTGTATGAAC+AGG | - | chr6.2:16582837-16582856 | MS.gene55480:intron | 30.0% |
| !! | TTGGTTTTTGGAGAGTTAAA+GGG | + | chr6.2:16581271-16581290 | None:intergenic | 30.0% |
| !! | TTTATTTGTTGTTGCAGATG+GGG | - | chr6.2:16584099-16584118 | MS.gene55480:intron | 30.0% |
| !!! | CTATTTTAAGGCTTTCTTCT+GGG | - | chr6.2:16582357-16582376 | MS.gene55480:intron | 30.0% |
| !!! | CTTTTATTTGTTGTTGCAGA+TGG | - | chr6.2:16584097-16584116 | MS.gene55480:intron | 30.0% |
| !!! | GAGTTTTTCCTTCGTTTTTT+TGG | - | chr6.2:16582002-16582021 | MS.gene55480:CDS | 30.0% |
| AAAACTGTGCAAGCTACAAA+TGG | + | chr6.2:16580589-16580608 | None:intergenic | 35.0% | |
| AATATACCGAAATACCAGCA+GGG | + | chr6.2:16583281-16583300 | None:intergenic | 35.0% | |
| AATGATTGATGAGGGAAACT+TGG | + | chr6.2:16581484-16581503 | None:intergenic | 35.0% | |
| ACATCAGTTGTATAGGTTCA+TGG | - | chr6.2:16582469-16582488 | MS.gene55480:intron | 35.0% | |
| ACGGTATGATATCAAAGACA+TGG | + | chr6.2:16582912-16582931 | None:intergenic | 35.0% | |
| ACTTGCAGATGGGATTTAAA+TGG | - | chr6.2:16584258-16584277 | MS.gene55480:intron | 35.0% | |
| AGTTAGCACATCAGTTGTAT+AGG | - | chr6.2:16582462-16582481 | MS.gene55480:intron | 35.0% | |
| ATCATTAAGCATCTTAGGCA+TGG | + | chr6.2:16583938-16583957 | None:intergenic | 35.0% | |
| ATGCCTAAGATGCTTAATGA+TGG | - | chr6.2:16583937-16583956 | MS.gene55480:intron | 35.0% | |
| ATTCTTCAGAAGTTGTCATG+TGG | - | chr6.2:16583351-16583370 | MS.gene55480:intron | 35.0% | |
| ATTGCAATTGTAGTCATGAC+AGG | + | chr6.2:16580518-16580537 | None:intergenic | 35.0% | |
| CCAGAAGAAAGCCTTAAAAT+AGG | + | chr6.2:16582359-16582378 | None:intergenic | 35.0% | |
| CTAGCAATTATCGCAATACA+TGG | + | chr6.2:16582282-16582301 | None:intergenic | 35.0% | |
| GACTTATGATCACAAATGCA+AGG | + | chr6.2:16582073-16582092 | None:intergenic | 35.0% | |
| GCATTTATAGATCCTGTGAT+AGG | - | chr6.2:16582327-16582346 | MS.gene55480:intron | 35.0% | |
| GGAATTGTCCAAAAAAACGA+AGG | + | chr6.2:16582013-16582032 | None:intergenic | 35.0% | |
| GGTAGTTGAATAAGATCATG+GGG | + | chr6.2:16580796-16580815 | None:intergenic | 35.0% | |
| GTAAATTCCTTTGACTGTTC+AGG | - | chr6.2:16581404-16581423 | MS.gene55480:intron | 35.0% | |
| GTAATAAGACTTAGATCAGG+AGG | + | chr6.2:16583115-16583134 | None:intergenic | 35.0% | |
| GTTAGTCATTTGATGCCATT+AGG | - | chr6.2:16580251-16580270 | MS.gene55480:intron | 35.0% | |
| TATTAAAGCAAGGGCTCTTA+AGG | + | chr6.2:16581841-16581860 | None:intergenic | 35.0% | |
| TCCATTGTCTCAAAGAAAGA+TGG | - | chr6.2:16581792-16581811 | MS.gene55480:intron | 35.0% | |
| TCGTTGTCAAAGTCAACTAT+AGG | - | chr6.2:16582091-16582110 | MS.gene55480:CDS | 35.0% | |
| TCTTATTCAACTACCTAGTG+TGG | - | chr6.2:16580801-16580820 | MS.gene55480:intron | 35.0% | |
| TCTTGTCAAGTCTCAGTATT+CGG | - | chr6.2:16583773-16583792 | MS.gene55480:intron | 35.0% | |
| TGATCAAGCTTAATTCCGTT+AGG | - | chr6.2:16580220-16580239 | MS.gene55480:intron | 35.0% | |
| TTAAGAGCCCTTGCTTTAAT+AGG | - | chr6.2:16581840-16581859 | MS.gene55480:intron | 35.0% | |
| TTACACAGAAGAAGAGGTAA+AGG | - | chr6.2:16582949-16582968 | MS.gene55480:intron | 35.0% | |
| TTCTTACCAGAGAATGAGAT+TGG | + | chr6.2:16579648-16579667 | None:intergenic | 35.0% | |
| ! | CATTACAATCCTTATTTCCC+TGG | - | chr6.2:16583901-16583920 | MS.gene55480:intron | 35.0% |
| ! | GTGTATAAACTTGATGACCA+CGG | + | chr6.2:16582868-16582887 | None:intergenic | 35.0% |
| ! | GTGTTTCTGACCTTATCTTA+TGG | - | chr6.2:16579712-16579731 | MS.gene55480:intron | 35.0% |
| ! | TTTGAGACAATGGATGATAC+AGG | + | chr6.2:16581786-16581805 | None:intergenic | 35.0% |
| !! | ACATAAAAGTACCTGAGCTT+CGG | + | chr6.2:16583995-16584014 | None:intergenic | 35.0% |
| !! | ACCATCTTTCTTTGAGACAA+TGG | + | chr6.2:16581796-16581815 | None:intergenic | 35.0% |
| !! | ATATCATACCGTGATTTGGT+TGG | - | chr6.2:16582920-16582939 | MS.gene55480:intron | 35.0% |
| !! | GATGTGAGATTTAGTTCTAC+AGG | + | chr6.2:16581034-16581053 | None:intergenic | 35.0% |
| !! | TGGTTTTTGGAGAGTTAAAG+GGG | + | chr6.2:16581270-16581289 | None:intergenic | 35.0% |
| !!! | ATGTCGTGTCATTTTTGTCT+TGG | - | chr6.2:16584126-16584145 | MS.gene55480:intron | 35.0% |
| !!! | CCTATTTTAAGGCTTTCTTC+TGG | - | chr6.2:16582356-16582375 | MS.gene55480:intron | 35.0% |
| !!! | GTTGGTTTTTGGAGAGTTAA+AGG | + | chr6.2:16581272-16581291 | None:intergenic | 35.0% |
| !!! | TGTCGTGTCATTTTTGTCTT+GGG | - | chr6.2:16584127-16584146 | MS.gene55480:intron | 35.0% |
| AAACATCTCACCCTCATCAT+TGG | + | chr6.2:16583008-16583027 | None:intergenic | 40.0% | |
| AAATTGCTTGACCACCTGAT+GGG | - | chr6.2:16583374-16583393 | MS.gene55480:intron | 40.0% | |
| AACATCTCACCCTCATCATT+GGG | + | chr6.2:16583007-16583026 | None:intergenic | 40.0% | |
| AACGCAGTTGTAGTACTAAG+AGG | + | chr6.2:16581557-16581576 | None:intergenic | 40.0% | |
| AAGACATGATCAGGATCTTC+TGG | + | chr6.2:16581730-16581749 | None:intergenic | 40.0% | |
| AAGACTTAGATCAGGAGGAT+AGG | + | chr6.2:16583110-16583129 | None:intergenic | 40.0% | |
| AAGCAACACCAACCAAATCA+CGG | + | chr6.2:16582931-16582950 | None:intergenic | 40.0% | |
| AAGCGTGATCATATGAACTG+AGG | + | chr6.2:16581968-16581987 | None:intergenic | 40.0% | |
| AATAGGATGAGTCCTATCAC+AGG | + | chr6.2:16582342-16582361 | None:intergenic | 40.0% | |
| AATTCCTTTGACTGTTCAGG+TGG | - | chr6.2:16581407-16581426 | MS.gene55480:intron | 40.0% | |
| ACCAGCTCCTATTAAAGCAA+GGG | + | chr6.2:16581850-16581869 | None:intergenic | 40.0% | |
| ACGCAGTTGTAGTACTAAGA+GGG | + | chr6.2:16581556-16581575 | None:intergenic | 40.0% | |
| AGAAGAAGAGGTAAAGGCTA+TGG | - | chr6.2:16582955-16582974 | MS.gene55480:intron | 40.0% | |
| AGACATGATCAGGATCTTCT+GGG | + | chr6.2:16581729-16581748 | None:intergenic | 40.0% | |
| AGTATTGTCACACGGATACA+AGG | + | chr6.2:16583821-16583840 | None:intergenic | 40.0% | |
| AGTGGGAAATGAATTGTGCA+AGG | - | chr6.2:16582524-16582543 | MS.gene55480:intron | 40.0% | |
| AGTTGTATAGGTTCATGGTG+TGG | - | chr6.2:16582474-16582493 | MS.gene55480:intron | 40.0% | |
| ATACTTTCATGTGGATGGCT+TGG | - | chr6.2:16583614-16583633 | MS.gene55480:intron | 40.0% | |
| ATATACCGAAATACCAGCAG+GGG | + | chr6.2:16583280-16583299 | None:intergenic | 40.0% | |
| ATCGCTTACTACTTGCAGAT+GGG | - | chr6.2:16584248-16584267 | MS.gene55480:intron | 40.0% | |
| ATGCAAATGAATCAGCTGCT+AGG | - | chr6.2:16583068-16583087 | MS.gene55480:intron | 40.0% | |
| ATTGTTGAGTGGAGAGAGAA+AGG | - | chr6.2:16582557-16582576 | MS.gene55480:intron | 40.0% | |
| CATAGAGCTAAGCTCCTTAA+AGG | + | chr6.2:16582629-16582648 | None:intergenic | 40.0% | |
| CATGCCAAAGAAAAAAGTGG+TGG | + | chr6.2:16580343-16580362 | None:intergenic | 40.0% | |
| CCACATGCCAAAGAAAAAAG+TGG | + | chr6.2:16580346-16580365 | None:intergenic | 40.0% | |
| CTCATAAGCCAACTAGACTA+TGG | + | chr6.2:16580560-16580579 | None:intergenic | 40.0% | |
| CTCTCAAATGGTCGTTATCA+AGG | - | chr6.2:16580384-16580403 | MS.gene55480:intron | 40.0% | |
| GAAACTCCAATCTCATTCTC+TGG | - | chr6.2:16579639-16579658 | MS.gene55480:CDS | 40.0% | |
| GAATATACCGAAATACCAGC+AGG | + | chr6.2:16583282-16583301 | None:intergenic | 40.0% | |
| GACTAACTTAGTCCACCTAA+CGG | + | chr6.2:16580238-16580257 | None:intergenic | 40.0% | |
| GATTCATTTGCATATGGCTG+AGG | + | chr6.2:16583061-16583080 | None:intergenic | 40.0% | |
| GCACTTTACCATAGTCTAGT+TGG | - | chr6.2:16580549-16580568 | MS.gene55480:intron | 40.0% | |
| GGATTAATGTCACGATACTC+TGG | - | chr6.2:16579926-16579945 | MS.gene55480:intron | 40.0% | |
| GTCTCAAAGAAAGATGGTTC+TGG | - | chr6.2:16581798-16581817 | MS.gene55480:intron | 40.0% | |
| TAGGAAGACTAGATTCTCCA+AGG | + | chr6.2:16582173-16582192 | None:intergenic | 40.0% | |
| TAGTACTACAACTGCGTTCT+TGG | - | chr6.2:16581559-16581578 | MS.gene55480:intron | 40.0% | |
| TATCAAAGACATGGAATGGC+AGG | + | chr6.2:16582903-16582922 | None:intergenic | 40.0% | |
| TATGTGTTTGCTCTCCTAAC+CGG | - | chr6.2:16583243-16583262 | MS.gene55480:intron | 40.0% | |
| TCAAGAGCAGTATTGTCACA+CGG | + | chr6.2:16583829-16583848 | None:intergenic | 40.0% | |
| TCAAGCTTAATTCCGTTAGG+TGG | - | chr6.2:16580223-16580242 | MS.gene55480:intron | 40.0% | |
| TGAGGTGACATGATCTAACA+TGG | - | chr6.2:16582210-16582229 | MS.gene55480:intron | 40.0% | |
| ! | GCAGCTGATTCATTTGCATA+TGG | + | chr6.2:16583067-16583086 | None:intergenic | 40.0% |
| ! | TACAATCCTTATTTCCCTGG+TGG | - | chr6.2:16583904-16583923 | MS.gene55480:intron | 40.0% |
| ! | TGTTGCTTACACAGAAGAAG+AGG | - | chr6.2:16582943-16582962 | MS.gene55480:intron | 40.0% |
| ! | TGTTTGCCCTTTGTGTTTTC+AGG | - | chr6.2:16583200-16583219 | MS.gene55480:intron | 40.0% |
| ! | TTCTTGTTTGCTCTACACCT+CGG | - | chr6.2:16582403-16582422 | MS.gene55480:intron | 40.0% |
| !! | AGTTGGATTTTGGAGGGTTT+TGG | - | chr6.2:16581070-16581089 | MS.gene55480:CDS | 40.0% |
| !! | CTTTAAGGAGCTTAGCTCTA+TGG | - | chr6.2:16582627-16582646 | MS.gene55480:intron | 40.0% |
| !! | GAGAGAGAAAGGTATCAAGA+GGG | - | chr6.2:16582568-16582587 | MS.gene55480:intron | 40.0% |
| !! | GGTACTTTTATGTGCTGATG+AGG | - | chr6.2:16584002-16584021 | MS.gene55480:intron | 40.0% |
| !! | GGTTTTTGGAGAGTTAAAGG+GGG | + | chr6.2:16581269-16581288 | None:intergenic | 40.0% |
| !! | GTTTTTGGAGAGTTAAAGGG+GGG | + | chr6.2:16581268-16581287 | None:intergenic | 40.0% |
| !! | TTTTTGGAGAGTTAAAGGGG+GGG | + | chr6.2:16581267-16581286 | None:intergenic | 40.0% |
| !!! | CCACTTTTTTCTTTGGCATG+TGG | - | chr6.2:16580343-16580362 | MS.gene55480:intron | 40.0% |
| !!! | CTGTCCACCACTTTTTTCTT+TGG | - | chr6.2:16580336-16580355 | MS.gene55480:intron | 40.0% |
| !!! | TGTGTTTGCGAGTTGGTTTT+TGG | + | chr6.2:16581283-16581302 | None:intergenic | 40.0% |
| AAGCATCTTAGGCATGGCAA+TGG | + | chr6.2:16583932-16583951 | None:intergenic | 45.0% | |
| AAGCGATCACTGAGTTTACC+AGG | + | chr6.2:16583037-16583056 | None:intergenic | 45.0% | |
| ACAAATTGGTGTGCAGGGAA+AGG | + | chr6.2:16583486-16583505 | None:intergenic | 45.0% | |
| ACATCTCACCCTCATCATTG+GGG | + | chr6.2:16583006-16583025 | None:intergenic | 45.0% | |
| ACATGATCAGGATCTTCTGG+GGG | + | chr6.2:16581727-16581746 | None:intergenic | 45.0% | |
| ACCCTTAGGCTAGACTTTGA+GGG | - | chr6.2:16579749-16579768 | MS.gene55480:intron | 45.0% | |
| AGCGATCACTGAGTTTACCA+GGG | + | chr6.2:16583036-16583055 | None:intergenic | 45.0% | |
| AGGGATCATGCAGTCTGTTA+GGG | - | chr6.2:16582587-16582606 | MS.gene55480:intron | 45.0% | |
| ATCCCTCAAAGTCTAGCCTA+AGG | + | chr6.2:16579754-16579773 | None:intergenic | 45.0% | |
| ATGACTGTTAGAGGAGAACC+TGG | + | chr6.2:16580006-16580025 | None:intergenic | 45.0% | |
| CAAATTGGTGTGCAGGGAAA+GGG | + | chr6.2:16583485-16583504 | None:intergenic | 45.0% | |
| CACCAGCTCCTATTAAAGCA+AGG | + | chr6.2:16581851-16581870 | None:intergenic | 45.0% | |
| CAGAGAGGATTGACGAAGAT+GGG | + | chr6.2:16580893-16580912 | None:intergenic | 45.0% | |
| CATCGCTTACTACTTGCAGA+TGG | - | chr6.2:16584247-16584266 | MS.gene55480:intron | 45.0% | |
| CTGCGTGCCATCTTCATTAT+AGG | - | chr6.2:16581597-16581616 | MS.gene55480:intron | 45.0% | |
| GAAATTGCTTGACCACCTGA+TGG | - | chr6.2:16583373-16583392 | MS.gene55480:intron | 45.0% | |
| GACATGATCAGGATCTTCTG+GGG | + | chr6.2:16581728-16581747 | None:intergenic | 45.0% | |
| GACGAGCCTGAAAACACAAA+GGG | + | chr6.2:16583209-16583228 | None:intergenic | 45.0% | |
| GCGCCATCATTAAGCATCTT+AGG | + | chr6.2:16583943-16583962 | None:intergenic | 45.0% | |
| GGCGCTGTTGAATATGAAGA+TGG | - | chr6.2:16583958-16583977 | MS.gene55480:intron | 45.0% | |
| GTATAGGTTCATGGTGTGGA+GGG | - | chr6.2:16582478-16582497 | MS.gene55480:intron | 45.0% | |
| TATACCGAAATACCAGCAGG+GGG | + | chr6.2:16583279-16583298 | None:intergenic | 45.0% | |
| TCACGCTTCGTAAGTTTGAC+TGG | - | chr6.2:16581980-16581999 | MS.gene55480:intron | 45.0% | |
| TCAGAGAGGATTGACGAAGA+TGG | + | chr6.2:16580894-16580913 | None:intergenic | 45.0% | |
| TCCCTCAAAGTCTAGCCTAA+GGG | + | chr6.2:16579753-16579772 | None:intergenic | 45.0% | |
| TGACGAGCCTGAAAACACAA+AGG | + | chr6.2:16583210-16583229 | None:intergenic | 45.0% | |
| TGAGATGGAAGAGCGAAAAC+TGG | - | chr6.2:16584160-16584179 | MS.gene55480:intron | 45.0% | |
| TGTATAGGTTCATGGTGTGG+AGG | - | chr6.2:16582477-16582496 | MS.gene55480:intron | 45.0% | |
| TGTTCTCAAGTCTCGCAAGT+TGG | - | chr6.2:16584340-16584359 | MS.gene55480:CDS | 45.0% | |
| TTAAGGCTTTCTTCTGGGTC+AGG | - | chr6.2:16582362-16582381 | MS.gene55480:intron | 45.0% | |
| TTAATAGGAGCTGGTGTCTC+AGG | - | chr6.2:16581855-16581874 | MS.gene55480:intron | 45.0% | |
| ! | AGTTTTCGCTCTTCCATCTC+AGG | + | chr6.2:16584161-16584180 | None:intergenic | 45.0% |
| ! | CTTGGGAGTTGGATTTTGGA+GGG | - | chr6.2:16581064-16581083 | MS.gene55480:CDS | 45.0% |
| ! | TAGGCTAGACTTTGAGGGAT+GGG | - | chr6.2:16579754-16579773 | MS.gene55480:intron | 45.0% |
| ! | TCACATCTTGGTGTGTGCTT+GGG | - | chr6.2:16581047-16581066 | MS.gene55480:CDS | 45.0% |
| ! | TGTGCTTGGGAGTTGGATTT+TGG | - | chr6.2:16581060-16581079 | MS.gene55480:CDS | 45.0% |
| ! | TTAGGCTAGACTTTGAGGGA+TGG | - | chr6.2:16579753-16579772 | MS.gene55480:intron | 45.0% |
| !! | AAAGATGGTTCTGGCTCTAC+GGG | - | chr6.2:16581807-16581826 | MS.gene55480:intron | 45.0% |
| !! | GAAAGATGGTTCTGGCTCTA+CGG | - | chr6.2:16581806-16581825 | MS.gene55480:intron | 45.0% |
| !! | GGAGAGAGAAAGGTATCAAG+AGG | - | chr6.2:16582567-16582586 | MS.gene55480:intron | 45.0% |
| !! | TAAGGTATTGCTACGGCATC+AGG | + | chr6.2:16580441-16580460 | None:intergenic | 45.0% |
| !! | TCAGCTGCTAGGTTTGCTAA+TGG | - | chr6.2:16583079-16583098 | MS.gene55480:intron | 45.0% |
| !! | TGGATTTTGGAGGGTTTTGG+AGG | - | chr6.2:16581073-16581092 | MS.gene55480:CDS | 45.0% |
| !! | TGTTTTCAGGCTCGTCACAA+TGG | - | chr6.2:16583213-16583232 | MS.gene55480:intron | 45.0% |
| !!! | ATTTTGGAGGGTTTTGGAGG+GGG | - | chr6.2:16581076-16581095 | MS.gene55480:CDS | 45.0% |
| !!! | GATTTTGGAGGGTTTTGGAG+GGG | - | chr6.2:16581075-16581094 | MS.gene55480:CDS | 45.0% |
| !!! | GGATTTTGGAGGGTTTTGGA+GGG | - | chr6.2:16581074-16581093 | MS.gene55480:CDS | 45.0% |
| !!! | GTCATTTTTGTCTTGGGCAG+CGG | - | chr6.2:16584133-16584152 | MS.gene55480:intron | 45.0% |
| !!! | AAAATTTTAATATTATAAAC+AGG | - | chr6.2:16581339-16581358 | MS.gene55480:intron | 5.0% |
| AAGTACCCGTGCATTTGCAC+AGG | - | chr6.2:16580945-16580964 | MS.gene55480:CDS | 50.0% | |
| AGGAGCCTGAATGAGAAGGT+GGG | - | chr6.2:16582428-16582447 | MS.gene55480:intron | 50.0% | |
| ATACCGAAATACCAGCAGGG+GGG | + | chr6.2:16583278-16583297 | None:intergenic | 50.0% | |
| ATGGATAGTGTGGAGATGCG+AGG | + | chr6.2:16581929-16581948 | None:intergenic | 50.0% | |
| ATGGCTCCACCAGGGAAATA+AGG | + | chr6.2:16583913-16583932 | None:intergenic | 50.0% | |
| CATACTATCGTCGTCTTCGG+TGG | - | chr6.2:16584315-16584334 | MS.gene55480:intron | 50.0% | |
| CCGAAGACGACGATAGTATG+CGG | + | chr6.2:16584315-16584334 | None:intergenic | 50.0% | |
| CCGCATACTATCGTCGTCTT+CGG | - | chr6.2:16584312-16584331 | MS.gene55480:intron | 50.0% | |
| GAAGATGGCCCCAATGATGA+GGG | - | chr6.2:16582995-16583014 | MS.gene55480:intron | 50.0% | |
| GACCCTTAGGCTAGACTTTG+AGG | - | chr6.2:16579748-16579767 | MS.gene55480:intron | 50.0% | |
| GAGGGATCATGCAGTCTGTT+AGG | - | chr6.2:16582586-16582605 | MS.gene55480:intron | 50.0% | |
| GATGCCACCTGAACAGTCAA+AGG | + | chr6.2:16581414-16581433 | None:intergenic | 50.0% | |
| GCCCTTGCTTTAATAGGAGC+TGG | - | chr6.2:16581846-16581865 | MS.gene55480:intron | 50.0% | |
| GCTGAGATTGAGGTGGAAGA+TGG | - | chr6.2:16582980-16582999 | MS.gene55480:intron | 50.0% | |
| GGATAGGAGCCTGAATGAGA+AGG | - | chr6.2:16582424-16582443 | MS.gene55480:intron | 50.0% | |
| GGGATCATGCAGTCTGTTAG+GGG | - | chr6.2:16582588-16582607 | MS.gene55480:intron | 50.0% | |
| GTTTGCTCTACACCTCGGAT+AGG | - | chr6.2:16582408-16582427 | MS.gene55480:intron | 50.0% | |
| TAGGAGCCTGAATGAGAAGG+TGG | - | chr6.2:16582427-16582446 | MS.gene55480:intron | 50.0% | |
| TATGGCAGCTGAGATTGAGG+TGG | - | chr6.2:16582973-16582992 | MS.gene55480:intron | 50.0% | |
| TCAGCTGATGAAGCTGAGCA+TGG | - | chr6.2:16581903-16581922 | MS.gene55480:intron | 50.0% | |
| TCGCATCTCCACACTATCCA+TGG | - | chr6.2:16581928-16581947 | MS.gene55480:intron | 50.0% | |
| TGCGTTCTTGGCTCCAATTC+TGG | - | chr6.2:16581571-16581590 | MS.gene55480:intron | 50.0% | |
| TGGCACGCAGTAACCAGAAT+TGG | + | chr6.2:16581587-16581606 | None:intergenic | 50.0% | |
| TGGGTGAAACTCACCACACT+AGG | + | chr6.2:16580817-16580836 | None:intergenic | 50.0% | |
| TGTATGAACAGGATTCGCCG+TGG | - | chr6.2:16582848-16582867 | MS.gene55480:intron | 50.0% | |
| TTGAGCCCACCTTCTCATTC+AGG | + | chr6.2:16582436-16582455 | None:intergenic | 50.0% | |
| TTGGTTCCAAACCACCCATC+AGG | + | chr6.2:16583391-16583410 | None:intergenic | 50.0% | |
| ! | AGCTGGTGTCTCAGGTCTTT+TGG | - | chr6.2:16581863-16581882 | MS.gene55480:intron | 50.0% |
| ! | AGGCTAGACTTTGAGGGATG+GGG | - | chr6.2:16579755-16579774 | MS.gene55480:intron | 50.0% |
| ! | CTAAGGGTGTGTTTGCGAGT+TGG | + | chr6.2:16581290-16581309 | None:intergenic | 50.0% |
| ! | CTCACATCTTGGTGTGTGCT+TGG | - | chr6.2:16581046-16581065 | MS.gene55480:CDS | 50.0% |
| ! | GCTGGTGTCTCAGGTCTTTT+GGG | - | chr6.2:16581864-16581883 | MS.gene55480:intron | 50.0% |
| ! | GCTTGGGAGTTGGATTTTGG+AGG | - | chr6.2:16581063-16581082 | MS.gene55480:CDS | 50.0% |
| !! | GCTGCTAGGTTTGCTAATGG+AGG | - | chr6.2:16583082-16583101 | MS.gene55480:intron | 50.0% |
| !!! | TTTTGGAGGGTTTTGGAGGG+GGG | - | chr6.2:16581077-16581096 | MS.gene55480:CDS | 50.0% |
| AAATACCAGCAGGGGGGTCA+CGG | + | chr6.2:16583272-16583291 | None:intergenic | 55.0% | |
| ACACTATCCATGGCCTCACG+AGG | - | chr6.2:16581938-16581957 | MS.gene55480:intron | 55.0% | |
| AGTACCTGAGCTTCGGTAGC+AGG | + | chr6.2:16583988-16584007 | None:intergenic | 55.0% | |
| ATCAGGTGATGTGGATCGCG+TGG | + | chr6.2:16580424-16580443 | None:intergenic | 55.0% | |
| CACTATCCATGGCCTCACGA+GGG | - | chr6.2:16581939-16581958 | MS.gene55480:intron | 55.0% | |
| CTCATTCAGGCTCCTATCCG+AGG | + | chr6.2:16582423-16582442 | None:intergenic | 55.0% | |
| GGAAGATGGCCCCAATGATG+AGG | - | chr6.2:16582994-16583013 | MS.gene55480:intron | 55.0% | |
| GGCTATGGCAGCTGAGATTG+AGG | - | chr6.2:16582970-16582989 | MS.gene55480:intron | 55.0% | |
| GGTGAGATGTTTACACGCCC+TGG | - | chr6.2:16583016-16583035 | MS.gene55480:intron | 55.0% | |
| GTACCTGAGCTTCGGTAGCA+GGG | + | chr6.2:16583987-16584006 | None:intergenic | 55.0% | |
| GTTCCAAACCACCCATCAGG+TGG | + | chr6.2:16583388-16583407 | None:intergenic | 55.0% | |
| TACCTGAGCTTCGGTAGCAG+GGG | + | chr6.2:16583986-16584005 | None:intergenic | 55.0% | |
| TCGTGAGGCCATGGATAGTG+TGG | + | chr6.2:16581939-16581958 | None:intergenic | 55.0% | |
| TGACCCCCCTGCTGGTATTT+CGG | - | chr6.2:16583272-16583291 | MS.gene55480:intron | 55.0% | |
| TGCTACGGCATCAGGTGATG+TGG | + | chr6.2:16580433-16580452 | None:intergenic | 55.0% | |
| TTGCACAGGCCGCACATGTT+TGG | - | chr6.2:16580959-16580978 | MS.gene55480:CDS | 55.0% | |
| TTGCTTGACCACCTGATGGG+TGG | - | chr6.2:16583377-16583396 | MS.gene55480:intron | 55.0% | |
| ! | AAGGGGGGGCATGATTTGCA+TGG | + | chr6.2:16581253-16581272 | None:intergenic | 55.0% |
| ! | CTTGGTGTGTGCTTGGGAGT+TGG | - | chr6.2:16581053-16581072 | MS.gene55480:CDS | 55.0% |
| ! | GGCTAGACTTTGAGGGATGG+GGG | - | chr6.2:16579756-16579775 | MS.gene55480:intron | 55.0% |
| ! | TGACCACCTGATGGGTGGTT+TGG | - | chr6.2:16583382-16583401 | MS.gene55480:intron | 55.0% |
| GAACTGAGGATGCCCTCGTG+AGG | + | chr6.2:16581954-16581973 | None:intergenic | 60.0% | |
| GCATGGCAATGGCTCCACCA+GGG | + | chr6.2:16583921-16583940 | None:intergenic | 60.0% | |
| GTGCGGCCTGTGCAAATGCA+CGG | + | chr6.2:16580954-16580973 | None:intergenic | 60.0% | |
| TACCCCTGCTACCGAAGCTC+AGG | - | chr6.2:16583981-16584000 | MS.gene55480:intron | 60.0% | |
| TGCGGCCTGTGCAAATGCAC+GGG | + | chr6.2:16580953-16580972 | None:intergenic | 60.0% | |
| TTGGGCAGCGGAACCTGAGA+TGG | - | chr6.2:16584145-16584164 | MS.gene55480:intron | 60.0% | |
| !! | TTGGAGGGGGGTGCTTTGGA+AGG | - | chr6.2:16581089-16581108 | MS.gene55480:CDS | 60.0% |
| !!! | GGTTTTGGAGGGGGGTGCTT+TGG | - | chr6.2:16581085-16581104 | MS.gene55480:CDS | 60.0% |
| AGCAGGGGGGTCACGGTAAC+CGG | + | chr6.2:16583265-16583284 | None:intergenic | 65.0% | |
| AGGATGCCCTCGTGAGGCCA+TGG | + | chr6.2:16581948-16581967 | None:intergenic | 65.0% | |
| GGCATGGCAATGGCTCCACC+AGG | + | chr6.2:16583922-16583941 | None:intergenic | 65.0% | |
| GGGGGTCACGGTAACCGGTT+AGG | + | chr6.2:16583260-16583279 | None:intergenic | 65.0% | |
| GGTTACCGTGACCCCCCTGC+TGG | - | chr6.2:16583264-16583283 | MS.gene55480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 16579604 | 16584382 | 16579604 | ID=MS.gene55480 |
| chr6.2 | mRNA | 16579604 | 16584382 | 16579604 | ID=MS.gene55480.t1;Parent=MS.gene55480 |
| chr6.2 | exon | 16584326 | 16584382 | 16584326 | ID=MS.gene55480.t1.exon1;Parent=MS.gene55480.t1 |
| chr6.2 | CDS | 16584326 | 16584382 | 16584326 | ID=cds.MS.gene55480.t1;Parent=MS.gene55480.t1 |
| chr6.2 | exon | 16581998 | 16582206 | 16581998 | ID=MS.gene55480.t1.exon2;Parent=MS.gene55480.t1 |
| chr6.2 | CDS | 16581998 | 16582206 | 16581998 | ID=cds.MS.gene55480.t1;Parent=MS.gene55480.t1 |
| chr6.2 | exon | 16580848 | 16581127 | 16580848 | ID=MS.gene55480.t1.exon3;Parent=MS.gene55480.t1 |
| chr6.2 | CDS | 16580848 | 16581127 | 16580848 | ID=cds.MS.gene55480.t1;Parent=MS.gene55480.t1 |
| chr6.2 | exon | 16580693 | 16580764 | 16580693 | ID=MS.gene55480.t1.exon4;Parent=MS.gene55480.t1 |
| chr6.2 | CDS | 16580693 | 16580764 | 16580693 | ID=cds.MS.gene55480.t1;Parent=MS.gene55480.t1 |
| chr6.2 | exon | 16579984 | 16580100 | 16579984 | ID=MS.gene55480.t1.exon5;Parent=MS.gene55480.t1 |
| chr6.2 | CDS | 16579984 | 16580100 | 16579984 | ID=cds.MS.gene55480.t1;Parent=MS.gene55480.t1 |
| chr6.2 | exon | 16579805 | 16579870 | 16579805 | ID=MS.gene55480.t1.exon6;Parent=MS.gene55480.t1 |
| chr6.2 | CDS | 16579805 | 16579870 | 16579805 | ID=cds.MS.gene55480.t1;Parent=MS.gene55480.t1 |
| chr6.2 | exon | 16579604 | 16579720 | 16579604 | ID=MS.gene55480.t1.exon7;Parent=MS.gene55480.t1 |
| chr6.2 | CDS | 16579604 | 16579720 | 16579604 | ID=cds.MS.gene55480.t1;Parent=MS.gene55480.t1 |
| Gene Sequence |
| Protein sequence |
