Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02464.t1 | XP_003612033.1 | 97.1 | 312 | 9 | 0 | 1 | 312 | 13 | 324 | 1.50E-171 | 612.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02464.t1 | Q6Z2G9 | 56.5 | 313 | 119 | 5 | 1 | 299 | 13 | 322 | 8.3e-91 | 335.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02464.t1 | G7KEX1 | 97.1 | 312 | 9 | 0 | 1 | 312 | 13 | 324 | 1.1e-171 | 612.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02464.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27297 | MS.gene02464 | PPI |
| MS.gene02464 | MS.gene24262 | PPI |
| MS.gene90691 | MS.gene02464 | PPI |
| MS.gene02464 | MS.gene26978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02464.t1 | MTR_5g020580 | 97.115 | 312 | 9 | 0 | 1 | 312 | 13 | 324 | 0.0 | 625 |
| MS.gene02464.t1 | MTR_8g077195 | 68.910 | 312 | 93 | 2 | 1 | 312 | 13 | 320 | 5.96e-158 | 447 |
| MS.gene02464.t1 | MTR_8g077675 | 58.466 | 313 | 116 | 6 | 1 | 312 | 13 | 312 | 5.90e-124 | 360 |
| MS.gene02464.t1 | MTR_8g077620 | 59.930 | 287 | 102 | 6 | 1 | 286 | 13 | 287 | 7.26e-117 | 342 |
| MS.gene02464.t1 | MTR_1g022370 | 57.679 | 293 | 106 | 5 | 1 | 275 | 13 | 305 | 1.25e-113 | 335 |
| MS.gene02464.t1 | MTR_2g020280 | 56.432 | 241 | 105 | 0 | 36 | 276 | 32 | 272 | 6.90e-95 | 286 |
| MS.gene02464.t1 | MTR_2g007930 | 54.444 | 270 | 114 | 7 | 1 | 263 | 10 | 277 | 4.73e-93 | 283 |
| MS.gene02464.t1 | MTR_1g098790 | 51.568 | 287 | 128 | 7 | 1 | 280 | 10 | 292 | 7.61e-93 | 282 |
| MS.gene02464.t1 | MTR_1g088960 | 49.813 | 267 | 132 | 2 | 2 | 268 | 10 | 274 | 4.06e-87 | 267 |
| MS.gene02464.t1 | MTR_2g076200 | 48.945 | 237 | 120 | 1 | 43 | 279 | 42 | 277 | 2.04e-77 | 241 |
| MS.gene02464.t1 | MTR_8g077650 | 47.735 | 287 | 96 | 11 | 25 | 296 | 3 | 250 | 9.14e-72 | 225 |
| MS.gene02464.t1 | MTR_8g077640 | 59.242 | 211 | 60 | 5 | 4 | 195 | 57 | 260 | 2.83e-66 | 213 |
| MS.gene02464.t1 | MTR_2g076210 | 42.857 | 259 | 141 | 4 | 36 | 292 | 30 | 283 | 2.42e-64 | 207 |
| MS.gene02464.t1 | MTR_2g020280 | 57.803 | 173 | 73 | 0 | 104 | 276 | 1 | 173 | 1.16e-63 | 203 |
| MS.gene02464.t1 | MTR_1g023800 | 52.667 | 150 | 66 | 2 | 1 | 149 | 13 | 158 | 7.07e-51 | 166 |
| MS.gene02464.t1 | MTR_0210s0010 | 71.134 | 97 | 22 | 1 | 86 | 182 | 9 | 99 | 2.82e-38 | 131 |
| MS.gene02464.t1 | MTR_0479s0040 | 74.286 | 70 | 12 | 1 | 102 | 171 | 12 | 75 | 9.21e-26 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02464.t1 | AT2G18280 | 60.069 | 288 | 95 | 5 | 1 | 287 | 13 | 281 | 3.12e-113 | 333 |
| MS.gene02464.t1 | AT2G18280 | 60.069 | 288 | 95 | 5 | 1 | 287 | 13 | 281 | 3.12e-113 | 333 |
| MS.gene02464.t1 | AT2G47900 | 52.593 | 270 | 126 | 1 | 1 | 268 | 10 | 279 | 1.87e-96 | 291 |
| MS.gene02464.t1 | AT2G47900 | 52.788 | 269 | 126 | 1 | 1 | 268 | 10 | 278 | 3.02e-96 | 290 |
| MS.gene02464.t1 | AT2G47900 | 52.788 | 269 | 126 | 1 | 1 | 268 | 10 | 278 | 3.02e-96 | 290 |
| MS.gene02464.t1 | AT1G47270 | 56.031 | 257 | 97 | 5 | 20 | 268 | 16 | 264 | 8.20e-94 | 283 |
| MS.gene02464.t1 | AT1G47270 | 56.031 | 257 | 97 | 5 | 20 | 268 | 41 | 289 | 1.07e-93 | 284 |
| MS.gene02464.t1 | AT1G47270 | 56.031 | 257 | 97 | 5 | 20 | 268 | 40 | 288 | 1.24e-93 | 284 |
| MS.gene02464.t1 | AT1G25280 | 53.455 | 275 | 117 | 3 | 1 | 264 | 10 | 284 | 2.22e-93 | 284 |
| MS.gene02464.t1 | AT1G76900 | 52.015 | 273 | 120 | 4 | 1 | 263 | 10 | 281 | 1.55e-92 | 282 |
| MS.gene02464.t1 | AT1G76900 | 52.015 | 273 | 120 | 4 | 1 | 263 | 10 | 281 | 1.55e-92 | 282 |
| MS.gene02464.t1 | AT1G76900 | 52.015 | 273 | 120 | 4 | 1 | 263 | 10 | 281 | 1.55e-92 | 282 |
| MS.gene02464.t1 | AT1G43640 | 48.944 | 284 | 135 | 6 | 1 | 276 | 10 | 291 | 8.68e-92 | 280 |
| MS.gene02464.t1 | AT1G43640 | 52.212 | 226 | 103 | 4 | 55 | 276 | 1 | 225 | 3.51e-80 | 248 |
| MS.gene02464.t1 | AT3G06380 | 51.440 | 243 | 113 | 3 | 19 | 260 | 9 | 247 | 9.82e-79 | 244 |
| MS.gene02464.t1 | AT5G18680 | 50.201 | 249 | 118 | 3 | 39 | 284 | 35 | 280 | 2.51e-77 | 241 |
| MS.gene02464.t1 | AT1G53320 | 53.960 | 202 | 93 | 0 | 43 | 244 | 44 | 245 | 2.08e-75 | 236 |
| MS.gene02464.t1 | AT5G18680 | 49.730 | 185 | 88 | 2 | 102 | 284 | 7 | 188 | 1.06e-52 | 175 |
| MS.gene02464.t1 | AT3G06380 | 56.129 | 155 | 64 | 2 | 106 | 260 | 5 | 155 | 7.23e-52 | 172 |
| MS.gene02464.t1 | AT1G25280 | 59.615 | 104 | 39 | 1 | 164 | 264 | 3 | 106 | 2.34e-36 | 132 |
| MS.gene02464.t1 | AT1G25280 | 59.615 | 104 | 39 | 1 | 164 | 264 | 3 | 106 | 2.34e-36 | 132 |
| MS.gene02464.t1 | AT1G61940 | 50.575 | 87 | 43 | 0 | 46 | 132 | 1 | 87 | 8.19e-27 | 106 |
| MS.gene02464.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 46 | 106 | 1 | 61 | 2.20e-16 | 77.4 |
Find 84 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTGCTGGACCGGCTATT+TGG | 0.209525 | 5.2:-11884748 | None:intergenic |
| CCAATTGGATCTTTACCTTT+TGG | 0.222216 | 5.2:-11884994 | None:intergenic |
| CCAGCAGGAGATTTCATTCT+AGG | 0.267212 | 5.2:+11884761 | MS.gene02464:CDS |
| CACAGACTTCATCATATCTT+TGG | 0.281729 | 5.2:+11884519 | MS.gene02464:CDS |
| ATCACCTGCTTTAACGAAAT+AGG | 0.313540 | 5.2:-11883224 | None:intergenic |
| CGTCAATCTTCCACACTCTT+CGG | 0.347596 | 5.2:-11883198 | None:intergenic |
| TTCAACCCTCGCAGAGTTGC+CGG | 0.349688 | 5.2:+11885029 | MS.gene02464:CDS |
| GTCAATCTTCCACACTCTTC+GGG | 0.352453 | 5.2:-11883197 | None:intergenic |
| TATACCTGTCTCAGCTGTTC+AGG | 0.357164 | 5.2:+11884894 | MS.gene02464:CDS |
| TAGAAGAGACTGAGACTTCT+TGG | 0.372030 | 5.2:+11883096 | MS.gene02464:CDS |
| TCTGCATATCTATTGTACTA+TGG | 0.382229 | 5.2:+11883400 | MS.gene02464:CDS |
| ATGATGCAATTCATTCTTCT+CGG | 0.382856 | 5.2:-11884865 | None:intergenic |
| CCAAGGGCCATTTGAGTCTC+TGG | 0.405945 | 5.2:+11885059 | MS.gene02464:CDS |
| TGAGGAAAAGATGTAGGAGT+TGG | 0.437219 | 5.2:-11884931 | None:intergenic |
| ACCTATTCAGCAGGGACAAT+GGG | 0.444059 | 5.2:+11883031 | MS.gene02464:CDS |
| AGTGATGTTAGAGTGATATC+AGG | 0.447610 | 5.2:-11883005 | None:intergenic |
| GAATTGCTTAAATCTCCAAT+TGG | 0.451744 | 5.2:-11885009 | None:intergenic |
| TGGAGGTTGGCTGTCATATA+TGG | 0.452519 | 5.2:-11884707 | None:intergenic |
| CTCCGATACAGTGCTTCATC+AGG | 0.459633 | 5.2:+11883362 | MS.gene02464:CDS |
| GCCCATTGTCCCTGCTGAAT+AGG | 0.468212 | 5.2:-11883032 | None:intergenic |
| CCAAAAGGTAAAGATCCAAT+TGG | 0.470093 | 5.2:+11884994 | MS.gene02464:CDS |
| ATCACTTGAACCTATTCAGC+AGG | 0.471218 | 5.2:+11883022 | MS.gene02464:CDS |
| TAGTTACACGCTGGAACTCT+TGG | 0.471948 | 5.2:-11884793 | None:intergenic |
| AGCCAACCTCCACACGGAGC+TGG | 0.473234 | 5.2:+11884718 | MS.gene02464:CDS |
| AATGAAATCTCCTGCTGGAC+CGG | 0.476146 | 5.2:-11884756 | None:intergenic |
| GCGGAGAACATTCAGCTCAT+AGG | 0.477645 | 5.2:-11884833 | None:intergenic |
| AACTCAAGGAGATGAGGGAT+GGG | 0.484739 | 5.2:+11882913 | None:intergenic |
| CTGAATGTTCTCCGCACTAG+AGG | 0.484848 | 5.2:+11884841 | MS.gene02464:CDS |
| CGTTCCAGCAATGCGTATGT+TGG | 0.488866 | 5.2:+11884559 | MS.gene02464:CDS |
| AACCAAATAGCCGGTCCAGC+AGG | 0.493265 | 5.2:+11884746 | MS.gene02464:CDS |
| AATGGCCCTTGGCTCTGAAC+CGG | 0.498889 | 5.2:-11885048 | None:intergenic |
| GTAATTTGAGGAAAAGATGT+AGG | 0.503684 | 5.2:-11884937 | None:intergenic |
| GAACTCAAGGAGATGAGGGA+TGG | 0.505860 | 5.2:+11882912 | None:intergenic |
| GTTTCCTATTTCGTTAAAGC+AGG | 0.506221 | 5.2:+11883220 | MS.gene02464:CDS |
| AAATGTTCATCAGTAATTTG+AGG | 0.509198 | 5.2:-11884949 | None:intergenic |
| CCTTCCTGAACAGCTGAGAC+AGG | 0.514005 | 5.2:-11884898 | None:intergenic |
| GAGTTGCCGGTTCAGAGCCA+AGG | 0.518280 | 5.2:+11885042 | MS.gene02464:CDS |
| CAGGAGATTTCATTCTAGGC+AGG | 0.528326 | 5.2:+11884765 | MS.gene02464:CDS |
| TTGAGTACCAGAGACTCAAA+TGG | 0.530012 | 5.2:-11885066 | None:intergenic |
| GAAACGACAACAGCACGTGC+AGG | 0.536741 | 5.2:-11883119 | None:intergenic |
| CCTAGAATGAAATCTCCTGC+TGG | 0.538624 | 5.2:-11884761 | None:intergenic |
| CCTGTCTCAGCTGTTCAGGA+AGG | 0.540458 | 5.2:+11884898 | MS.gene02464:CDS |
| CTGTCTCAGCTGTTCAGGAA+GGG | 0.541956 | 5.2:+11884899 | MS.gene02464:CDS |
| CGAGGAGAGGTGTGGCAAGT+AGG | 0.542255 | 5.2:+11882949 | MS.gene02464:CDS |
| GCTGTCATATATGGTGAACT+TGG | 0.544644 | 5.2:-11884698 | None:intergenic |
| GTGCTTCTGTGTGTAAATCA+TGG | 0.549837 | 5.2:+11883144 | MS.gene02464:CDS |
| CCAGAGACTCAAATGGCCCT+TGG | 0.550663 | 5.2:-11885059 | None:intergenic |
| TTCCAGCTCCGTGTGGAGGT+TGG | 0.551308 | 5.2:-11884720 | None:intergenic |
| AACCTATTCAGCAGGGACAA+TGG | 0.551680 | 5.2:+11883030 | MS.gene02464:CDS |
| TCTGAACCGGCAACTCTGCG+AGG | 0.556736 | 5.2:-11885035 | None:intergenic |
| AAGGAGATGAGGGATGGGAT+TGG | 0.557067 | 5.2:+11882918 | None:intergenic |
| TGCTACTTGATATAATTCGA+AGG | 0.558581 | 5.2:+11883072 | MS.gene02464:CDS |
| TGTCTCAGCTGTTCAGGAAG+GGG | 0.560697 | 5.2:+11884900 | MS.gene02464:CDS |
| ATCGGAGAATCACGAGGACC+CGG | 0.561657 | 5.2:-11883346 | None:intergenic |
| CTCCTGATGAAGCACTGTAT+CGG | 0.562380 | 5.2:-11883364 | None:intergenic |
| TTCTTCTCGGCCCTCTAGTG+CGG | 0.564773 | 5.2:-11884852 | None:intergenic |
| GTCTCAGCTGTTCAGGAAGG+GGG | 0.566290 | 5.2:+11884901 | MS.gene02464:CDS |
| CTGAACCGGCAACTCTGCGA+GGG | 0.569008 | 5.2:-11885034 | None:intergenic |
| ATATCTATTGTACTATGGAC+TGG | 0.572719 | 5.2:+11883405 | MS.gene02464:CDS |
| GCTACTTGATATAATTCGAA+GGG | 0.575810 | 5.2:+11883073 | MS.gene02464:CDS |
| GCGTCAGCACCAGAGCCAAA+AGG | 0.578551 | 5.2:+11884979 | MS.gene02464:CDS |
| AACATTCAGCTCATAGGCAA+TGG | 0.582469 | 5.2:-11884827 | None:intergenic |
| CTGGAATACAACCAAATAGC+CGG | 0.589720 | 5.2:+11884737 | MS.gene02464:CDS |
| CGATACAGTGCTTCATCAGG+AGG | 0.590035 | 5.2:+11883365 | MS.gene02464:CDS |
| CTGAACAATCTCTTGTGTAA+CGG | 0.594307 | 5.2:-11883171 | None:intergenic |
| ATGCGTATGTTGGAAAACTC+AGG | 0.602255 | 5.2:+11884569 | MS.gene02464:CDS |
| AGTTGCCGGTTCAGAGCCAA+GGG | 0.602888 | 5.2:+11885043 | MS.gene02464:CDS |
| CAAGTAGGCATTCACAGCGT+CGG | 0.608761 | 5.2:+11882964 | MS.gene02464:CDS |
| TGAATGTTCTCCGCACTAGA+GGG | 0.618617 | 5.2:+11884842 | MS.gene02464:CDS |
| TTCTGTGTGTAAATCATGGA+GGG | 0.630242 | 5.2:+11883148 | MS.gene02464:CDS |
| AGATATGATGAAGTCTGTGC+CGG | 0.635175 | 5.2:-11884515 | None:intergenic |
| GTTCAGACTCCCGAAGAGTG+TGG | 0.642949 | 5.2:+11883188 | MS.gene02464:CDS |
| TGTATTCCAGCTCCGTGTGG+AGG | 0.645160 | 5.2:-11884724 | None:intergenic |
| CTTCTGTGTGTAAATCATGG+AGG | 0.649209 | 5.2:+11883147 | MS.gene02464:CDS |
| ATTGGTAATACGTCGAGGAG+AGG | 0.649495 | 5.2:+11882936 | MS.gene02464:CDS |
| ATATCAAGTAGCAATTCAGA+TGG | 0.650336 | 5.2:-11883062 | None:intergenic |
| GGTTGTATTCCAGCTCCGTG+TGG | 0.669899 | 5.2:-11884727 | None:intergenic |
| CACTGTATCGGAGAATCACG+AGG | 0.670191 | 5.2:-11883352 | None:intergenic |
| GATACAGTGCTTCATCAGGA+GGG | 0.688983 | 5.2:+11883366 | MS.gene02464:CDS |
| TCACTTGAACCTATTCAGCA+GGG | 0.690245 | 5.2:+11883023 | MS.gene02464:CDS |
| TAATACGTCGAGGAGAGGTG+TGG | 0.694801 | 5.2:+11882941 | MS.gene02464:CDS |
| CTAACAATATAGTTACACGC+TGG | 0.696992 | 5.2:-11884802 | None:intergenic |
| ATGGGATTGGTAATACGTCG+AGG | 0.700501 | 5.2:+11882931 | MS.gene02464:CDS |
| TATGACAGCCAACCTCCACA+CGG | 0.700970 | 5.2:+11884712 | MS.gene02464:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTAATGCTAAATTTTA+GGG | + | chr5.2:11883905-11883924 | MS.gene02464:intron | 15.0% |
| !!! | TTATTGTAATGCTAAATTTT+AGG | + | chr5.2:11883904-11883923 | MS.gene02464:intron | 15.0% |
| !!! | TTTCATTTTTTTTTCTCAAA+GGG | + | chr5.2:11883480-11883499 | MS.gene02464:intron | 15.0% |
| !!! | TTTTCATTTTTTTTTCTCAA+AGG | + | chr5.2:11883479-11883498 | MS.gene02464:intron | 15.0% |
| !! | ACTTTCTCAAATTAATTACT+TGG | + | chr5.2:11883654-11883673 | MS.gene02464:intron | 20.0% |
| !! | TACCAATTTCAAAATCATTA+AGG | - | chr5.2:11884403-11884422 | None:intergenic | 20.0% |
| !! | TTATGAATTTAGATCTTGAA+CGG | + | chr5.2:11883549-11883568 | MS.gene02464:intron | 20.0% |
| !! | TTTATTGCACTAAATATGTA+GGG | + | chr5.2:11883576-11883595 | MS.gene02464:intron | 20.0% |
| !!! | TTTAAAATCACCCAAATAAA+GGG | - | chr5.2:11884096-11884115 | None:intergenic | 20.0% |
| !!! | TTTAAGCAATTTTCAAGTAT+TGG | - | chr5.2:11883959-11883978 | None:intergenic | 20.0% |
| !!! | TTTTATTGCACTAAATATGT+AGG | + | chr5.2:11883575-11883594 | MS.gene02464:intron | 20.0% |
| ! | AAATGTTCATCAGTAATTTG+AGG | - | chr5.2:11884952-11884971 | None:intergenic | 25.0% |
| ! | AATCATTAAGGTGAATTGAA+CGG | - | chr5.2:11884391-11884410 | None:intergenic | 25.0% |
| ! | CAAGTAATTTCTTAACTATG+AGG | - | chr5.2:11884003-11884022 | None:intergenic | 25.0% |
| ! | TTAATTACACGTGCATTATT+TGG | + | chr5.2:11883817-11883836 | MS.gene02464:intron | 25.0% |
| !! | TCATTTGTTTCCCTTTATTT+GGG | + | chr5.2:11884083-11884102 | MS.gene02464:intron | 25.0% |
| !!! | AAATTTTAGGGCTAATTCTA+CGG | + | chr5.2:11883917-11883936 | MS.gene02464:intron | 25.0% |
| !!! | AACTGATGATAAATTTTGAC+AGG | + | chr5.2:11884659-11884678 | MS.gene02464:intron | 25.0% |
| !!! | ACTTTTTGTTTATGAATAGC+CGG | + | chr5.2:11883327-11883346 | MS.gene02464:intron | 25.0% |
| !!! | CACCTTAATGATTTTGAAAT+TGG | + | chr5.2:11884398-11884417 | MS.gene02464:intron | 25.0% |
| !!! | CTTTAAAATCACCCAAATAA+AGG | - | chr5.2:11884097-11884116 | None:intergenic | 25.0% |
| !!! | TAGATGTTCTTTTTCATTGT+TGG | + | chr5.2:11884261-11884280 | MS.gene02464:intron | 25.0% |
| !!! | TTAATTCTTCACTCCTTTTT+TGG | + | chr5.2:11883246-11883265 | MS.gene02464:intron | 25.0% |
| !!! | TTCTGTTTTTTCTTATACAG+CGG | + | chr5.2:11884441-11884460 | MS.gene02464:intron | 25.0% |
| !!! | TTGAATCACTTTTGAAAACT+TGG | + | chr5.2:11883523-11883542 | MS.gene02464:intron | 25.0% |
| !!! | TTTTAACTTCTGACTTGAAT+GGG | + | chr5.2:11884309-11884328 | MS.gene02464:intron | 25.0% |
| !!! | TTTTTAACTTCTGACTTGAA+TGG | + | chr5.2:11884308-11884327 | MS.gene02464:intron | 25.0% |
| AACAACAATTACGCCAAAAA+AGG | - | chr5.2:11883262-11883281 | None:intergenic | 30.0% | |
| AAGATACAGAACAACCAAAA+TGG | - | chr5.2:11883298-11883317 | None:intergenic | 30.0% | |
| ATATCAAGTAGCAATTCAGA+TGG | - | chr5.2:11883065-11883084 | None:intergenic | 30.0% | |
| ATATCTATTGTACTATGGAC+TGG | + | chr5.2:11883405-11883424 | MS.gene02464:CDS | 30.0% | |
| ATGATGCAATTCATTCTTCT+CGG | - | chr5.2:11884868-11884887 | None:intergenic | 30.0% | |
| CTCATTTGTTTCCCTTTATT+TGG | + | chr5.2:11884082-11884101 | MS.gene02464:intron | 30.0% | |
| GAATTGCTTAAATCTCCAAT+TGG | - | chr5.2:11885012-11885031 | None:intergenic | 30.0% | |
| GCTACTTGATATAATTCGAA+GGG | + | chr5.2:11883073-11883092 | MS.gene02464:CDS | 30.0% | |
| GTAATTTGAGGAAAAGATGT+AGG | - | chr5.2:11884940-11884959 | None:intergenic | 30.0% | |
| GTGTTGGAAATTTGAAAAGT+GGG | - | chr5.2:11884624-11884643 | None:intergenic | 30.0% | |
| TAGCAGATAAAATAGTGTGT+TGG | - | chr5.2:11884640-11884659 | None:intergenic | 30.0% | |
| TATTAGCTGCCAAAAAGATA+AGG | + | chr5.2:11884485-11884504 | MS.gene02464:CDS | 30.0% | |
| TCTGCATATCTATTGTACTA+TGG | + | chr5.2:11883400-11883419 | MS.gene02464:CDS | 30.0% | |
| TGTGTTGGAAATTTGAAAAG+TGG | - | chr5.2:11884625-11884644 | None:intergenic | 30.0% | |
| TTGGAGTCATAGTATGAAAT+GGG | + | chr5.2:11884205-11884224 | MS.gene02464:intron | 30.0% | |
| ! | AAACTAGAAGTGCATTTCTT+TGG | + | chr5.2:11884186-11884205 | MS.gene02464:intron | 30.0% |
| ! | TGCTACTTGATATAATTCGA+AGG | + | chr5.2:11883072-11883091 | MS.gene02464:CDS | 30.0% |
| ! | TTTGACAGGTCTAACTTTTT+GGG | + | chr5.2:11884673-11884692 | MS.gene02464:intron | 30.0% |
| ! | TTTGGAGTCATAGTATGAAA+TGG | + | chr5.2:11884204-11884223 | MS.gene02464:intron | 30.0% |
| ! | TTTTGACAGGTCTAACTTTT+TGG | + | chr5.2:11884672-11884691 | MS.gene02464:intron | 30.0% |
| !! | CTTTTTGTTTATGAATAGCC+GGG | + | chr5.2:11883328-11883347 | MS.gene02464:intron | 30.0% |
| !! | GATGTTGATTCGACAAAAAA+GGG | + | chr5.2:11884026-11884045 | MS.gene02464:intron | 30.0% |
| AGTGATGTTAGAGTGATATC+AGG | - | chr5.2:11883008-11883027 | None:intergenic | 35.0% | |
| ATCACCTGCTTTAACGAAAT+AGG | - | chr5.2:11883227-11883246 | None:intergenic | 35.0% | |
| CACAGACTTCATCATATCTT+TGG | + | chr5.2:11884519-11884538 | MS.gene02464:CDS | 35.0% | |
| CACATTGAAGCAAACTTACA+TGG | - | chr5.2:11883433-11883452 | None:intergenic | 35.0% | |
| CCAAAAGGTAAAGATCCAAT+TGG | + | chr5.2:11884994-11885013 | MS.gene02464:CDS | 35.0% | |
| CTAACAATATAGTTACACGC+TGG | - | chr5.2:11884805-11884824 | None:intergenic | 35.0% | |
| CTGAACAATCTCTTGTGTAA+CGG | - | chr5.2:11883174-11883193 | None:intergenic | 35.0% | |
| GAGGAAAACAAAGCACAAAT+CGG | - | chr5.2:11884369-11884388 | None:intergenic | 35.0% | |
| GTTTCCTATTTCGTTAAAGC+AGG | + | chr5.2:11883220-11883239 | MS.gene02464:CDS | 35.0% | |
| TGATTCGACAAAAAAGGGAA+GGG | + | chr5.2:11884031-11884050 | MS.gene02464:intron | 35.0% | |
| TTCTGTGTGTAAATCATGGA+GGG | + | chr5.2:11883148-11883167 | MS.gene02464:CDS | 35.0% | |
| ! | CATGTAAGTTTGCTTCAATG+TGG | + | chr5.2:11883431-11883450 | MS.gene02464:intron | 35.0% |
| ! | CCAATTGGATCTTTACCTTT+TGG | - | chr5.2:11884997-11885016 | None:intergenic | 35.0% |
| ! | GAAACAAATGAGTTGAGTTG+AGG | - | chr5.2:11884074-11884093 | None:intergenic | 35.0% |
| ! | TGGAAAACTCAGGTAAGTTT+TGG | + | chr5.2:11884579-11884598 | MS.gene02464:intron | 35.0% |
| ! | TTGATTCGACAAAAAAGGGA+AGG | + | chr5.2:11884030-11884049 | MS.gene02464:intron | 35.0% |
| ! | TTTTCGCTGCTTATCCATTT+TGG | + | chr5.2:11883281-11883300 | MS.gene02464:intron | 35.0% |
| !! | CGATGTTGATTCGACAAAAA+AGG | + | chr5.2:11884025-11884044 | MS.gene02464:intron | 35.0% |
| !! | TTTCAAGTATTGGTCTGATG+CGG | - | chr5.2:11883949-11883968 | None:intergenic | 35.0% |
| !!! | TTTGGGTGATTTTAAAGTGC+CGG | + | chr5.2:11884100-11884119 | MS.gene02464:intron | 35.0% |
| AAAAAGATAAGGAGGGCAAC+CGG | + | chr5.2:11884496-11884515 | MS.gene02464:CDS | 40.0% | |
| AACAAAGCACAAATCGGTTG+AGG | - | chr5.2:11884363-11884382 | None:intergenic | 40.0% | |
| AACATTCAGCTCATAGGCAA+TGG | - | chr5.2:11884830-11884849 | None:intergenic | 40.0% | |
| AGATATGATGAAGTCTGTGC+CGG | - | chr5.2:11884518-11884537 | None:intergenic | 40.0% | |
| AGCTGCCAAAAAGATAAGGA+GGG | + | chr5.2:11884489-11884508 | MS.gene02464:CDS | 40.0% | |
| ATCACTTGAACCTATTCAGC+AGG | + | chr5.2:11883022-11883041 | MS.gene02464:CDS | 40.0% | |
| ATGCGTATGTTGGAAAACTC+AGG | + | chr5.2:11884569-11884588 | MS.gene02464:CDS | 40.0% | |
| CATTAAGGTGAATTGAACGG+AGG | - | chr5.2:11884388-11884407 | None:intergenic | 40.0% | |
| CTGGAATACAACCAAATAGC+CGG | + | chr5.2:11884737-11884756 | MS.gene02464:CDS | 40.0% | |
| CTTCTGTGTGTAAATCATGG+AGG | + | chr5.2:11883147-11883166 | MS.gene02464:CDS | 40.0% | |
| GACTTGAATGGGACAGAAAT+TGG | + | chr5.2:11884320-11884339 | MS.gene02464:intron | 40.0% | |
| GCTGTCATATATGGTGAACT+TGG | - | chr5.2:11884701-11884720 | None:intergenic | 40.0% | |
| GTGCTTCTGTGTGTAAATCA+TGG | + | chr5.2:11883144-11883163 | MS.gene02464:CDS | 40.0% | |
| GTTCGAACATGTGCATTACA+TGG | + | chr5.2:11883678-11883697 | MS.gene02464:intron | 40.0% | |
| TAGAAGAGACTGAGACTTCT+TGG | + | chr5.2:11883096-11883115 | MS.gene02464:CDS | 40.0% | |
| TAGCTGCCAAAAAGATAAGG+AGG | + | chr5.2:11884488-11884507 | MS.gene02464:CDS | 40.0% | |
| TCACTTGAACCTATTCAGCA+GGG | + | chr5.2:11883023-11883042 | MS.gene02464:CDS | 40.0% | |
| TGAGGAAAAGATGTAGGAGT+TGG | - | chr5.2:11884934-11884953 | None:intergenic | 40.0% | |
| ! | TTTTCCAACATACGCATTGC+TGG | - | chr5.2:11884566-11884585 | None:intergenic | 40.0% |
| AACCTATTCAGCAGGGACAA+TGG | + | chr5.2:11883030-11883049 | MS.gene02464:CDS | 45.0% | |
| AATGAAATCTCCTGCTGGAC+CGG | - | chr5.2:11884759-11884778 | None:intergenic | 45.0% | |
| ACAGAAATTGGCTGAACCTG+TGG | + | chr5.2:11884332-11884351 | MS.gene02464:intron | 45.0% | |
| ACCTATTCAGCAGGGACAAT+GGG | + | chr5.2:11883031-11883050 | MS.gene02464:CDS | 45.0% | |
| CAGGAGATTTCATTCTAGGC+AGG | + | chr5.2:11884765-11884784 | MS.gene02464:CDS | 45.0% | |
| CCAGCAGGAGATTTCATTCT+AGG | + | chr5.2:11884761-11884780 | MS.gene02464:CDS | 45.0% | |
| CCTAGAATGAAATCTCCTGC+TGG | - | chr5.2:11884764-11884783 | None:intergenic | 45.0% | |
| CGTCAATCTTCCACACTCTT+CGG | - | chr5.2:11883201-11883220 | None:intergenic | 45.0% | |
| CTAAAATCCGACAGCCTCTA+GGG | - | chr5.2:11884130-11884149 | None:intergenic | 45.0% | |
| GATACAGTGCTTCATCAGGA+GGG | + | chr5.2:11883366-11883385 | MS.gene02464:CDS | 45.0% | |
| GTCAATCTTCCACACTCTTC+GGG | - | chr5.2:11883200-11883219 | None:intergenic | 45.0% | |
| TAGTTACACGCTGGAACTCT+TGG | - | chr5.2:11884796-11884815 | None:intergenic | 45.0% | |
| TATACCTGTCTCAGCTGTTC+AGG | + | chr5.2:11884894-11884913 | MS.gene02464:CDS | 45.0% | |
| TGAATGTTCTCCGCACTAGA+GGG | + | chr5.2:11884842-11884861 | MS.gene02464:CDS | 45.0% | |
| TTCGACAAAAAAGGGAAGGG+AGG | + | chr5.2:11884034-11884053 | MS.gene02464:intron | 45.0% | |
| ! | ATGGGATTGGTAATACGTCG+AGG | + | chr5.2:11882931-11882950 | MS.gene02464:CDS | 45.0% |
| ! | ATTGGTAATACGTCGAGGAG+AGG | + | chr5.2:11882936-11882955 | MS.gene02464:CDS | 45.0% |
| ! | GGTTGCCCTCCTTATCTTTT+TGG | - | chr5.2:11884497-11884516 | None:intergenic | 45.0% |
| ! | TCTAAAATCCGACAGCCTCT+AGG | - | chr5.2:11884131-11884150 | None:intergenic | 45.0% |
| ! | TGGAGGTTGGCTGTCATATA+TGG | - | chr5.2:11884710-11884729 | None:intergenic | 45.0% |
| !! | CTCCTGATGAAGCACTGTAT+CGG | - | chr5.2:11883367-11883386 | None:intergenic | 45.0% |
| !!! | GGATCTTTACCTTTTGGCTC+TGG | - | chr5.2:11884991-11885010 | None:intergenic | 45.0% |
| ACAAAAAAGGGAAGGGAGGC+GGG | + | chr5.2:11884038-11884057 | MS.gene02464:intron | 50.0% | |
| ATCGGTTGAGGTGTATCCAC+AGG | - | chr5.2:11884351-11884370 | None:intergenic | 50.0% | |
| CAAGTAGGCATTCACAGCGT+CGG | + | chr5.2:11882964-11882983 | MS.gene02464:CDS | 50.0% | |
| CACTGTATCGGAGAATCACG+AGG | - | chr5.2:11883355-11883374 | None:intergenic | 50.0% | |
| CGATACAGTGCTTCATCAGG+AGG | + | chr5.2:11883365-11883384 | MS.gene02464:CDS | 50.0% | |
| CGTTCCAGCAATGCGTATGT+TGG | + | chr5.2:11884559-11884578 | MS.gene02464:CDS | 50.0% | |
| CTCCGATACAGTGCTTCATC+AGG | + | chr5.2:11883362-11883381 | MS.gene02464:CDS | 50.0% | |
| CTGAATGTTCTCCGCACTAG+AGG | + | chr5.2:11884841-11884860 | MS.gene02464:CDS | 50.0% | |
| CTGTCTCAGCTGTTCAGGAA+GGG | + | chr5.2:11884899-11884918 | MS.gene02464:CDS | 50.0% | |
| GACAAAAAAGGGAAGGGAGG+CGG | + | chr5.2:11884037-11884056 | MS.gene02464:intron | 50.0% | |
| GCGGAGAACATTCAGCTCAT+AGG | - | chr5.2:11884836-11884855 | None:intergenic | 50.0% | |
| TAATACGTCGAGGAGAGGTG+TGG | + | chr5.2:11882941-11882960 | MS.gene02464:CDS | 50.0% | |
| TATGACAGCCAACCTCCACA+CGG | + | chr5.2:11884712-11884731 | MS.gene02464:CDS | 50.0% | |
| TGTCTCAGCTGTTCAGGAAG+GGG | + | chr5.2:11884900-11884919 | MS.gene02464:CDS | 50.0% | |
| AACCAAATAGCCGGTCCAGC+AGG | + | chr5.2:11884746-11884765 | MS.gene02464:CDS | 55.0% | |
| ATCGGAGAATCACGAGGACC+CGG | - | chr5.2:11883349-11883368 | None:intergenic | 55.0% | |
| CCTGTCTCAGCTGTTCAGGA+AGG | + | chr5.2:11884898-11884917 | MS.gene02464:CDS | 55.0% | |
| CCTTCCTGAACAGCTGAGAC+AGG | - | chr5.2:11884901-11884920 | None:intergenic | 55.0% | |
| GAAACGACAACAGCACGTGC+AGG | - | chr5.2:11883122-11883141 | None:intergenic | 55.0% | |
| GCCCATTGTCCCTGCTGAAT+AGG | - | chr5.2:11883035-11883054 | None:intergenic | 55.0% | |
| GGTTGTATTCCAGCTCCGTG+TGG | - | chr5.2:11884730-11884749 | None:intergenic | 55.0% | |
| GTCTCAGCTGTTCAGGAAGG+GGG | + | chr5.2:11884901-11884920 | MS.gene02464:CDS | 55.0% | |
| GTTCAGACTCCCGAAGAGTG+TGG | + | chr5.2:11883188-11883207 | MS.gene02464:CDS | 55.0% | |
| TGTATTCCAGCTCCGTGTGG+AGG | - | chr5.2:11884727-11884746 | None:intergenic | 55.0% | |
| TTCAACCCTCGCAGAGTTGC+CGG | + | chr5.2:11885029-11885048 | MS.gene02464:CDS | 55.0% | |
| TTCTTCTCGGCCCTCTAGTG+CGG | - | chr5.2:11884855-11884874 | None:intergenic | 55.0% | |
| !! | AAAGTGCCGGTTCACCCTAG+AGG | + | chr5.2:11884113-11884132 | MS.gene02464:intron | 55.0% |
| !! | AATGGCCCTTGGCTCTGAAC+CGG | - | chr5.2:11885051-11885070 | None:intergenic | 55.0% |
| !! | AGTTGCCGGTTCAGAGCCAA+GGG | + | chr5.2:11885043-11885062 | MS.gene02464:CDS | 55.0% |
| CGGTTCACCCTAGAGGCTGT+CGG | + | chr5.2:11884120-11884139 | MS.gene02464:intron | 60.0% | |
| CTCCTGCTGGACCGGCTATT+TGG | - | chr5.2:11884751-11884770 | None:intergenic | 60.0% | |
| CTGAACCGGCAACTCTGCGA+GGG | - | chr5.2:11885037-11885056 | None:intergenic | 60.0% | |
| GCGTCAGCACCAGAGCCAAA+AGG | + | chr5.2:11884979-11884998 | MS.gene02464:CDS | 60.0% | |
| TCTGAACCGGCAACTCTGCG+AGG | - | chr5.2:11885038-11885057 | None:intergenic | 60.0% | |
| TTCCAGCTCCGTGTGGAGGT+TGG | - | chr5.2:11884723-11884742 | None:intergenic | 60.0% | |
| ! | CGAGGAGAGGTGTGGCAAGT+AGG | + | chr5.2:11882949-11882968 | MS.gene02464:CDS | 60.0% |
| !! | CGACAGCCTCTAGGGTGAAC+CGG | - | chr5.2:11884122-11884141 | None:intergenic | 60.0% |
| !! | GAGTTGCCGGTTCAGAGCCA+AGG | + | chr5.2:11885042-11885061 | MS.gene02464:CDS | 60.0% |
| AGCCAACCTCCACACGGAGC+TGG | + | chr5.2:11884718-11884737 | MS.gene02464:CDS | 65.0% | |
| AGGGAAGGGAGGCGGGAGTA+TGG | + | chr5.2:11884045-11884064 | MS.gene02464:intron | 65.0% | |
| ! | GGGAAGGGAGGCGGGAGTAT+GGG | + | chr5.2:11884046-11884065 | MS.gene02464:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 11882924 | 11885080 | 11882924 | ID=MS.gene02464 |
| chr5.2 | mRNA | 11882924 | 11885080 | 11882924 | ID=MS.gene02464.t1;Parent=MS.gene02464 |
| chr5.2 | exon | 11882924 | 11883241 | 11882924 | ID=MS.gene02464.t1.exon1;Parent=MS.gene02464.t1 |
| chr5.2 | CDS | 11882924 | 11883241 | 11882924 | ID=cds.MS.gene02464.t1;Parent=MS.gene02464.t1 |
| chr5.2 | exon | 11883346 | 11883433 | 11883346 | ID=MS.gene02464.t1.exon2;Parent=MS.gene02464.t1 |
| chr5.2 | CDS | 11883346 | 11883433 | 11883346 | ID=cds.MS.gene02464.t1;Parent=MS.gene02464.t1 |
| chr5.2 | exon | 11884461 | 11884590 | 11884461 | ID=MS.gene02464.t1.exon3;Parent=MS.gene02464.t1 |
| chr5.2 | CDS | 11884461 | 11884590 | 11884461 | ID=cds.MS.gene02464.t1;Parent=MS.gene02464.t1 |
| chr5.2 | exon | 11884681 | 11885080 | 11884681 | ID=MS.gene02464.t1.exon4;Parent=MS.gene02464.t1 |
| chr5.2 | CDS | 11884681 | 11885080 | 11884681 | ID=cds.MS.gene02464.t1;Parent=MS.gene02464.t1 |
| Gene Sequence |
| Protein sequence |
