AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02465


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02465.t1 MTR_5g020580 97.525 404 10 0 1 404 13 416 0.0 819
MS.gene02465.t1 MTR_8g077195 74.505 404 99 2 1 404 13 412 0.0 631
MS.gene02465.t1 MTR_1g022370 62.796 422 127 8 1 404 13 422 0.0 510
MS.gene02465.t1 MTR_8g077620 57.855 401 134 9 1 395 13 384 3.07e-156 446
MS.gene02465.t1 MTR_8g077675 58.354 401 145 9 1 397 13 395 2.70e-155 444
MS.gene02465.t1 MTR_2g007930 54.976 422 168 11 1 404 10 427 3.09e-150 432
MS.gene02465.t1 MTR_2g020280 57.182 369 151 3 36 404 32 393 3.07e-149 428
MS.gene02465.t1 MTR_1g098790 53.037 428 171 11 1 404 10 431 1.08e-145 421
MS.gene02465.t1 MTR_1g088960 53.846 403 176 6 2 404 10 402 3.34e-144 416
MS.gene02465.t1 MTR_2g076200 50.829 362 146 2 43 404 42 371 3.27e-127 372
MS.gene02465.t1 MTR_8g077650 51.786 392 113 12 25 401 3 333 5.32e-119 349
MS.gene02465.t1 MTR_2g020280 58.140 301 119 3 104 404 1 294 3.51e-118 345
MS.gene02465.t1 MTR_2g076210 44.772 373 167 6 36 404 30 367 4.32e-101 305
MS.gene02465.t1 MTR_8g077640 59.242 211 60 5 4 195 57 260 6.34e-65 212
MS.gene02465.t1 MTR_8g077640 55.556 117 51 1 279 394 267 383 1.75e-33 129
MS.gene02465.t1 MTR_1g023800 52.667 150 66 2 1 149 13 158 1.25e-49 165
MS.gene02465.t1 MTR_0210s0010 71.134 97 22 1 86 182 9 99 2.50e-37 131
MS.gene02465.t1 MTR_0479s0040 74.286 70 12 1 102 171 12 75 2.58e-25 98.6
MS.gene02465.t1 MTR_2g105390 36.697 109 54 4 301 403 260 359 1.93e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02465.t1 AT2G18280 63.547 406 121 7 1 404 13 393 4.08e-177 499
MS.gene02465.t1 AT2G18280 63.547 406 121 7 1 404 13 393 4.08e-177 499
MS.gene02465.t1 AT1G47270 58.333 396 131 9 20 404 16 388 5.55e-155 443
MS.gene02465.t1 AT1G47270 58.333 396 131 9 20 404 40 412 9.17e-155 443
MS.gene02465.t1 AT1G47270 58.333 396 131 9 20 404 41 413 9.39e-155 443
MS.gene02465.t1 AT1G25280 53.899 436 169 8 1 404 10 445 1.69e-151 436
MS.gene02465.t1 AT2G47900 54.433 406 175 4 1 404 10 407 2.27e-150 432
MS.gene02465.t1 AT2G47900 54.568 405 175 4 1 404 10 406 3.79e-150 431
MS.gene02465.t1 AT2G47900 54.568 405 175 4 1 404 10 406 3.79e-150 431
MS.gene02465.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene02465.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene02465.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene02465.t1 AT1G43640 50.000 430 179 11 1 404 10 429 1.46e-140 408
MS.gene02465.t1 AT5G18680 53.887 373 147 7 39 404 35 389 2.52e-130 380
MS.gene02465.t1 AT1G43640 52.151 372 147 9 55 404 1 363 1.37e-128 375
MS.gene02465.t1 AT3G06380 51.671 389 168 7 19 404 9 380 2.76e-128 375
MS.gene02465.t1 AT1G53320 51.934 362 148 3 43 404 44 379 1.78e-124 365
MS.gene02465.t1 AT5G18680 54.369 309 117 6 102 404 7 297 1.22e-105 314
MS.gene02465.t1 AT3G06380 54.153 301 119 6 106 404 5 288 1.71e-101 303
MS.gene02465.t1 AT1G25280 56.180 267 93 6 162 404 1 267 8.15e-95 285
MS.gene02465.t1 AT1G25280 56.180 267 93 6 162 404 1 267 8.15e-95 285
MS.gene02465.t1 AT1G61940 50.575 87 43 0 46 132 1 87 3.82e-26 106
MS.gene02465.t1 AT1G61940 54.098 61 28 0 46 106 1 61 5.83e-16 77.4

Find 105 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGGACCGGCTATT+TGG 0.209525 5.2:-11895202 None:intergenic
CCAATTGGATCTTTACCTTT+TGG 0.222216 5.2:-11895448 None:intergenic
TAACACGGCCCTTGAAATTT+AGG 0.254077 5.2:-11895585 None:intergenic
CCAGCAGGAGATTTCATTCT+AGG 0.267212 5.2:+11895215 MS.gene02465:CDS
TGGAAAAGATATATTTACTA+TGG 0.274718 5.2:+11895711 MS.gene02465:CDS
CACAGACTTCATCATATCTT+TGG 0.281729 5.2:+11894973 MS.gene02465:CDS
ATCACCTGCTTTAACGAAAT+AGG 0.313540 5.2:-11893678 None:intergenic
TTGCAGCTGTTCATGCCATC+TGG 0.337933 5.2:-11895554 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.342353 5.2:+11895691 MS.gene02465:CDS
CGTCAATCTTCCACACTCTT+CGG 0.347596 5.2:-11893652 None:intergenic
TTCAACCCTCGCAGAGTTGC+CGG 0.349688 5.2:+11895483 MS.gene02465:CDS
GTCAATCTTCCACACTCTTC+GGG 0.352453 5.2:-11893651 None:intergenic
GAGAAGGTTATCTTGCAGTT+TGG 0.354935 5.2:+11895682 MS.gene02465:CDS
TATACCTGTCTCAGCTGTTC+AGG 0.357164 5.2:+11895348 MS.gene02465:CDS
TAGAAGAGACTGAGACTTCT+TGG 0.372030 5.2:+11893550 MS.gene02465:CDS
TCTGCATATCTATTGTACTA+TGG 0.382229 5.2:+11893854 MS.gene02465:CDS
ATGATGCAATTCATTCTTCT+CGG 0.382856 5.2:-11895319 None:intergenic
CCAAGGGCCATTTGAGTCTC+TGG 0.405945 5.2:+11895513 MS.gene02465:CDS
ATAACCTTCTCTTGCTCTGC+AGG 0.415381 5.2:-11895670 None:intergenic
ATGCTGGTGCCTAAATTTCA+AGG 0.430024 5.2:+11895576 MS.gene02465:CDS
TGAGGAAAAGATGTAGGAGT+TGG 0.437219 5.2:-11895385 None:intergenic
ACCTATTCAGCAGGGACAAT+GGG 0.444059 5.2:+11893485 MS.gene02465:CDS
AGTGATGTTAGAGTGATATC+AGG 0.447610 5.2:-11893459 None:intergenic
GAATTGCTTAAATCTCCAAT+TGG 0.451744 5.2:-11895463 None:intergenic
TGGAGGTTGGCTGTCATATA+TGG 0.452519 5.2:-11895161 None:intergenic
CTCCGATACAGTGCTTCATC+AGG 0.459633 5.2:+11893816 MS.gene02465:CDS
GCCCATTGTCCCTGCTGAAT+AGG 0.468212 5.2:-11893486 None:intergenic
CCAAAAGGTAAAGATCCAAT+TGG 0.470093 5.2:+11895448 MS.gene02465:CDS
ATCACTTGAACCTATTCAGC+AGG 0.471218 5.2:+11893476 MS.gene02465:CDS
TAGTTACACGCTGGAACTCT+TGG 0.471948 5.2:-11895247 None:intergenic
AGCCAACCTCCACACGGAGC+TGG 0.473234 5.2:+11895172 MS.gene02465:CDS
GGCATGAACAGCTGCAATGC+TGG 0.474704 5.2:+11895560 MS.gene02465:CDS
AATGAAATCTCCTGCTGGAC+CGG 0.476146 5.2:-11895210 None:intergenic
GCGGAGAACATTCAGCTCAT+AGG 0.477645 5.2:-11895287 None:intergenic
AACTCAAGGAGATGAGGGAT+GGG 0.484739 5.2:+11893367 None:intergenic
CTGAATGTTCTCCGCACTAG+AGG 0.484848 5.2:+11895295 MS.gene02465:CDS
CGTTCCAGCAATGCGTATGT+TGG 0.488866 5.2:+11895013 MS.gene02465:CDS
AACCAAATAGCCGGTCCAGC+AGG 0.493265 5.2:+11895200 MS.gene02465:CDS
AATGGCCCTTGGCTCTGAAC+CGG 0.498889 5.2:-11895502 None:intergenic
GTAATTTGAGGAAAAGATGT+AGG 0.503684 5.2:-11895391 None:intergenic
GAACTCAAGGAGATGAGGGA+TGG 0.505860 5.2:+11893366 None:intergenic
TGCAGCTGTTCATGCCATCT+GGG 0.506117 5.2:-11895553 None:intergenic
GTTTCCTATTTCGTTAAAGC+AGG 0.506221 5.2:+11893674 MS.gene02465:CDS
AAATGTTCATCAGTAATTTG+AGG 0.509198 5.2:-11895403 None:intergenic
CCTTCCTGAACAGCTGAGAC+AGG 0.514005 5.2:-11895352 None:intergenic
GAGTTGCCGGTTCAGAGCCA+AGG 0.518280 5.2:+11895496 MS.gene02465:CDS
CAGGAGATTTCATTCTAGGC+AGG 0.528326 5.2:+11895219 MS.gene02465:CDS
CATGGATCTCATTCACATGC+TGG 0.528401 5.2:-11895799 None:intergenic
TTGAGTACCAGAGACTCAAA+TGG 0.530012 5.2:-11895520 None:intergenic
AGTTAAGAACTTTCAACTTG+TGG 0.534362 5.2:+11895618 MS.gene02465:CDS
GAAACGACAACAGCACGTGC+AGG 0.536741 5.2:-11893573 None:intergenic
CCTAGAATGAAATCTCCTGC+TGG 0.538624 5.2:-11895215 None:intergenic
CCTGTCTCAGCTGTTCAGGA+AGG 0.540458 5.2:+11895352 MS.gene02465:CDS
CTGTCTCAGCTGTTCAGGAA+GGG 0.541956 5.2:+11895353 MS.gene02465:CDS
CGAGGAGAGGTGTGGCAAGT+AGG 0.542255 5.2:+11893403 MS.gene02465:CDS
GCATATCGCAAAGGCTTGGA+AGG 0.543599 5.2:-11895755 None:intergenic
GCTGTCATATATGGTGAACT+TGG 0.544644 5.2:-11895152 None:intergenic
GTGCTTCTGTGTGTAAATCA+TGG 0.549837 5.2:+11893598 MS.gene02465:CDS
CCAGAGACTCAAATGGCCCT+TGG 0.550663 5.2:-11895513 None:intergenic
TTCCAGCTCCGTGTGGAGGT+TGG 0.551308 5.2:-11895174 None:intergenic
AACCTATTCAGCAGGGACAA+TGG 0.551680 5.2:+11893484 MS.gene02465:CDS
TCTGAACCGGCAACTCTGCG+AGG 0.556736 5.2:-11895489 None:intergenic
AAGGAGATGAGGGATGGGAT+TGG 0.557067 5.2:+11893372 None:intergenic
TGCTACTTGATATAATTCGA+AGG 0.558581 5.2:+11893526 MS.gene02465:CDS
TGTCTCAGCTGTTCAGGAAG+GGG 0.560697 5.2:+11895354 MS.gene02465:CDS
ATCGGAGAATCACGAGGACC+CGG 0.561657 5.2:-11893800 None:intergenic
CTCCTGATGAAGCACTGTAT+CGG 0.562380 5.2:-11893818 None:intergenic
TTCTTCTCGGCCCTCTAGTG+CGG 0.564773 5.2:-11895306 None:intergenic
GTCTCAGCTGTTCAGGAAGG+GGG 0.566290 5.2:+11895355 MS.gene02465:CDS
CTGAACCGGCAACTCTGCGA+GGG 0.569008 5.2:-11895488 None:intergenic
ATATCTATTGTACTATGGAC+TGG 0.572719 5.2:+11893859 MS.gene02465:CDS
GCTACTTGATATAATTCGAA+GGG 0.575810 5.2:+11893527 MS.gene02465:CDS
GCGTCAGCACCAGAGCCAAA+AGG 0.578551 5.2:+11895433 MS.gene02465:CDS
TCAAGCATATCGCAAAGGCT+TGG 0.579509 5.2:-11895759 None:intergenic
AACATTCAGCTCATAGGCAA+TGG 0.582469 5.2:-11895281 None:intergenic
CTGGAATACAACCAAATAGC+CGG 0.589720 5.2:+11895191 MS.gene02465:CDS
CGATACAGTGCTTCATCAGG+AGG 0.590035 5.2:+11893819 MS.gene02465:CDS
CTGAACAATCTCTTGTGTAA+CGG 0.594307 5.2:-11893625 None:intergenic
TTCTCCTGCAGAGCAAGAGA+AGG 0.597006 5.2:+11895666 MS.gene02465:CDS
ATGCGTATGTTGGAAAACTC+AGG 0.602255 5.2:+11895023 MS.gene02465:CDS
AGTTGCCGGTTCAGAGCCAA+GGG 0.602888 5.2:+11895497 MS.gene02465:CDS
GCAGGAGAAACATTATGAGA+TGG 0.604319 5.2:-11895652 None:intergenic
CAAGTAGGCATTCACAGCGT+CGG 0.608761 5.2:+11893418 MS.gene02465:CDS
GGAAGGCAGAGAGTGGATAA+CGG 0.610357 5.2:-11895738 None:intergenic
GCTGCTCAAGCATATCGCAA+AGG 0.610612 5.2:-11895764 None:intergenic
TTTCAAGGGCCGTGTTACAG+TGG 0.611483 5.2:+11895591 MS.gene02465:CDS
TGAATGTTCTCCGCACTAGA+GGG 0.618617 5.2:+11895296 MS.gene02465:CDS
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 5.2:-11895745 None:intergenic
TTCTGTGTGTAAATCATGGA+GGG 0.630242 5.2:+11893602 MS.gene02465:CDS
AGATATGATGAAGTCTGTGC+CGG 0.635175 5.2:-11894969 None:intergenic
GTTCAGACTCCCGAAGAGTG+TGG 0.642949 5.2:+11893642 MS.gene02465:CDS
TGCTGGTGCCTAAATTTCAA+GGG 0.642974 5.2:+11895577 MS.gene02465:CDS
TAACTGAAGCCACTGTAACA+CGG 0.643817 5.2:-11895600 None:intergenic
TGTATTCCAGCTCCGTGTGG+AGG 0.645160 5.2:-11895178 None:intergenic
CTTCTGTGTGTAAATCATGG+AGG 0.649209 5.2:+11893601 MS.gene02465:CDS
ATTGGTAATACGTCGAGGAG+AGG 0.649495 5.2:+11893390 MS.gene02465:CDS
ATATCAAGTAGCAATTCAGA+TGG 0.650336 5.2:-11893516 None:intergenic
GGTTGTATTCCAGCTCCGTG+TGG 0.669899 5.2:-11895181 None:intergenic
CACTGTATCGGAGAATCACG+AGG 0.670191 5.2:-11893806 None:intergenic
GATACAGTGCTTCATCAGGA+GGG 0.688983 5.2:+11893820 MS.gene02465:CDS
TCACTTGAACCTATTCAGCA+GGG 0.690245 5.2:+11893477 MS.gene02465:CDS
TAATACGTCGAGGAGAGGTG+TGG 0.694801 5.2:+11893395 MS.gene02465:CDS
CTAACAATATAGTTACACGC+TGG 0.696992 5.2:-11895256 None:intergenic
ATGGGATTGGTAATACGTCG+AGG 0.700501 5.2:+11893385 MS.gene02465:CDS
TATGACAGCCAACCTCCACA+CGG 0.700970 5.2:+11895166 MS.gene02465:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGTAATGCTAAATTTTA+GGG + chr5.2:11894359-11894378 MS.gene02465:intron 15.0%
!!! TTATTGTAATGCTAAATTTT+AGG + chr5.2:11894358-11894377 MS.gene02465:intron 15.0%
!!! TTTCATTTTTTTTTCTCAAA+GGG + chr5.2:11893934-11893953 MS.gene02465:intron 15.0%
!!! TTTTCATTTTTTTTTCTCAA+AGG + chr5.2:11893933-11893952 MS.gene02465:intron 15.0%
!! ACTTTCTCAAATTAATTACT+TGG + chr5.2:11894108-11894127 MS.gene02465:intron 20.0%
!! TACCAATTTCAAAATCATTA+AGG - chr5.2:11894857-11894876 None:intergenic 20.0%
!! TGGAAAAGATATATTTACTA+TGG + chr5.2:11895711-11895730 MS.gene02465:CDS 20.0%
!! TTATGAATTTAGATCTTGAA+CGG + chr5.2:11894003-11894022 MS.gene02465:intron 20.0%
!! TTTATTGCACTAAATATGTA+GGG + chr5.2:11894030-11894049 MS.gene02465:intron 20.0%
!!! TTTAAAATCACCCAAATAAA+GGG - chr5.2:11894550-11894569 None:intergenic 20.0%
!!! TTTAAGCAATTTTCAAGTAT+TGG - chr5.2:11894413-11894432 None:intergenic 20.0%
!!! TTTTATTGCACTAAATATGT+AGG + chr5.2:11894029-11894048 MS.gene02465:intron 20.0%
! AAATGTTCATCAGTAATTTG+AGG - chr5.2:11895406-11895425 None:intergenic 25.0%
! AATCATTAAGGTGAATTGAA+CGG - chr5.2:11894845-11894864 None:intergenic 25.0%
! CAAGTAATTTCTTAACTATG+AGG - chr5.2:11894457-11894476 None:intergenic 25.0%
! TTAATTACACGTGCATTATT+TGG + chr5.2:11894271-11894290 MS.gene02465:intron 25.0%
!! TCATTTGTTTCCCTTTATTT+GGG + chr5.2:11894537-11894556 MS.gene02465:intron 25.0%
!!! AAATTTTAGGGCTAATTCTA+CGG + chr5.2:11894371-11894390 MS.gene02465:intron 25.0%
!!! AACTGATGATAAATTTTGAC+AGG + chr5.2:11895113-11895132 MS.gene02465:intron 25.0%
!!! ACTTTTTGTTTATGAATAGC+CGG + chr5.2:11893781-11893800 MS.gene02465:intron 25.0%
!!! CACCTTAATGATTTTGAAAT+TGG + chr5.2:11894852-11894871 MS.gene02465:intron 25.0%
!!! CTTTAAAATCACCCAAATAA+AGG - chr5.2:11894551-11894570 None:intergenic 25.0%
!!! TAGATGTTCTTTTTCATTGT+TGG + chr5.2:11894715-11894734 MS.gene02465:intron 25.0%
!!! TTAATTCTTCACTCCTTTTT+TGG + chr5.2:11893700-11893719 MS.gene02465:intron 25.0%
!!! TTCTGTTTTTTCTTATACAG+CGG + chr5.2:11894895-11894914 MS.gene02465:intron 25.0%
!!! TTGAATCACTTTTGAAAACT+TGG + chr5.2:11893977-11893996 MS.gene02465:intron 25.0%
!!! TTTTAACTTCTGACTTGAAT+GGG + chr5.2:11894763-11894782 MS.gene02465:intron 25.0%
!!! TTTTTAACTTCTGACTTGAA+TGG + chr5.2:11894762-11894781 MS.gene02465:intron 25.0%
AACAACAATTACGCCAAAAA+AGG - chr5.2:11893716-11893735 None:intergenic 30.0%
AAGATACAGAACAACCAAAA+TGG - chr5.2:11893752-11893771 None:intergenic 30.0%
AGTTAAGAACTTTCAACTTG+TGG + chr5.2:11895618-11895637 MS.gene02465:CDS 30.0%
ATATCAAGTAGCAATTCAGA+TGG - chr5.2:11893519-11893538 None:intergenic 30.0%
ATATCTATTGTACTATGGAC+TGG + chr5.2:11893859-11893878 MS.gene02465:CDS 30.0%
ATGATGCAATTCATTCTTCT+CGG - chr5.2:11895322-11895341 None:intergenic 30.0%
CTCATTTGTTTCCCTTTATT+TGG + chr5.2:11894536-11894555 MS.gene02465:intron 30.0%
GAATTGCTTAAATCTCCAAT+TGG - chr5.2:11895466-11895485 None:intergenic 30.0%
GCTACTTGATATAATTCGAA+GGG + chr5.2:11893527-11893546 MS.gene02465:CDS 30.0%
GTAATTTGAGGAAAAGATGT+AGG - chr5.2:11895394-11895413 None:intergenic 30.0%
GTGTTGGAAATTTGAAAAGT+GGG - chr5.2:11895078-11895097 None:intergenic 30.0%
TAGCAGATAAAATAGTGTGT+TGG - chr5.2:11895094-11895113 None:intergenic 30.0%
TATTAGCTGCCAAAAAGATA+AGG + chr5.2:11894939-11894958 MS.gene02465:CDS 30.0%
TCTGCATATCTATTGTACTA+TGG + chr5.2:11893854-11893873 MS.gene02465:CDS 30.0%
TGTGTTGGAAATTTGAAAAG+TGG - chr5.2:11895079-11895098 None:intergenic 30.0%
TTGGAGTCATAGTATGAAAT+GGG + chr5.2:11894659-11894678 MS.gene02465:intron 30.0%
! AAACTAGAAGTGCATTTCTT+TGG + chr5.2:11894640-11894659 MS.gene02465:intron 30.0%
! TGCTACTTGATATAATTCGA+AGG + chr5.2:11893526-11893545 MS.gene02465:CDS 30.0%
! TTTGACAGGTCTAACTTTTT+GGG + chr5.2:11895127-11895146 MS.gene02465:intron 30.0%
! TTTGGAGTCATAGTATGAAA+TGG + chr5.2:11894658-11894677 MS.gene02465:intron 30.0%
! TTTTGACAGGTCTAACTTTT+TGG + chr5.2:11895126-11895145 MS.gene02465:intron 30.0%
!! CTTTTTGTTTATGAATAGCC+GGG + chr5.2:11893782-11893801 MS.gene02465:intron 30.0%
!! GATGTTGATTCGACAAAAAA+GGG + chr5.2:11894480-11894499 MS.gene02465:intron 30.0%
AGTGATGTTAGAGTGATATC+AGG - chr5.2:11893462-11893481 None:intergenic 35.0%
ATCACCTGCTTTAACGAAAT+AGG - chr5.2:11893681-11893700 None:intergenic 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG + chr5.2:11895691-11895710 MS.gene02465:CDS 35.0%
CACAGACTTCATCATATCTT+TGG + chr5.2:11894973-11894992 MS.gene02465:CDS 35.0%
CACATTGAAGCAAACTTACA+TGG - chr5.2:11893887-11893906 None:intergenic 35.0%
CCAAAAGGTAAAGATCCAAT+TGG + chr5.2:11895448-11895467 MS.gene02465:CDS 35.0%
CTAACAATATAGTTACACGC+TGG - chr5.2:11895259-11895278 None:intergenic 35.0%
CTGAACAATCTCTTGTGTAA+CGG - chr5.2:11893628-11893647 None:intergenic 35.0%
GAGGAAAACAAAGCACAAAT+CGG - chr5.2:11894823-11894842 None:intergenic 35.0%
GTTTCCTATTTCGTTAAAGC+AGG + chr5.2:11893674-11893693 MS.gene02465:CDS 35.0%
TGATTCGACAAAAAAGGGAA+GGG + chr5.2:11894485-11894504 MS.gene02465:intron 35.0%
TTCTGTGTGTAAATCATGGA+GGG + chr5.2:11893602-11893621 MS.gene02465:CDS 35.0%
! CATGTAAGTTTGCTTCAATG+TGG + chr5.2:11893885-11893904 MS.gene02465:intron 35.0%
! CCAATTGGATCTTTACCTTT+TGG - chr5.2:11895451-11895470 None:intergenic 35.0%
! GAAACAAATGAGTTGAGTTG+AGG - chr5.2:11894528-11894547 None:intergenic 35.0%
! TGGAAAACTCAGGTAAGTTT+TGG + chr5.2:11895033-11895052 MS.gene02465:intron 35.0%
! TTGATTCGACAAAAAAGGGA+AGG + chr5.2:11894484-11894503 MS.gene02465:intron 35.0%
! TTTTCGCTGCTTATCCATTT+TGG + chr5.2:11893735-11893754 MS.gene02465:intron 35.0%
!! CGATGTTGATTCGACAAAAA+AGG + chr5.2:11894479-11894498 MS.gene02465:intron 35.0%
!! TTTCAAGTATTGGTCTGATG+CGG - chr5.2:11894403-11894422 None:intergenic 35.0%
!!! TTTGGGTGATTTTAAAGTGC+CGG + chr5.2:11894554-11894573 MS.gene02465:intron 35.0%
AAAAAGATAAGGAGGGCAAC+CGG + chr5.2:11894950-11894969 MS.gene02465:CDS 40.0%
AACAAAGCACAAATCGGTTG+AGG - chr5.2:11894817-11894836 None:intergenic 40.0%
AACATTCAGCTCATAGGCAA+TGG - chr5.2:11895284-11895303 None:intergenic 40.0%
AGATATGATGAAGTCTGTGC+CGG - chr5.2:11894972-11894991 None:intergenic 40.0%
AGCTGCCAAAAAGATAAGGA+GGG + chr5.2:11894943-11894962 MS.gene02465:CDS 40.0%
ATCACTTGAACCTATTCAGC+AGG + chr5.2:11893476-11893495 MS.gene02465:CDS 40.0%
ATGCGTATGTTGGAAAACTC+AGG + chr5.2:11895023-11895042 MS.gene02465:CDS 40.0%
ATGCTGGTGCCTAAATTTCA+AGG + chr5.2:11895576-11895595 MS.gene02465:CDS 40.0%
CATTAAGGTGAATTGAACGG+AGG - chr5.2:11894842-11894861 None:intergenic 40.0%
CTGGAATACAACCAAATAGC+CGG + chr5.2:11895191-11895210 MS.gene02465:CDS 40.0%
CTTCTGTGTGTAAATCATGG+AGG + chr5.2:11893601-11893620 MS.gene02465:CDS 40.0%
GACTTGAATGGGACAGAAAT+TGG + chr5.2:11894774-11894793 MS.gene02465:intron 40.0%
GAGAAGGTTATCTTGCAGTT+TGG + chr5.2:11895682-11895701 MS.gene02465:CDS 40.0%
GCAGGAGAAACATTATGAGA+TGG - chr5.2:11895655-11895674 None:intergenic 40.0%
GCTGTCATATATGGTGAACT+TGG - chr5.2:11895155-11895174 None:intergenic 40.0%
GTGCTTCTGTGTGTAAATCA+TGG + chr5.2:11893598-11893617 MS.gene02465:CDS 40.0%
GTTCGAACATGTGCATTACA+TGG + chr5.2:11894132-11894151 MS.gene02465:intron 40.0%
TAACACGGCCCTTGAAATTT+AGG - chr5.2:11895588-11895607 None:intergenic 40.0%
TAACTGAAGCCACTGTAACA+CGG - chr5.2:11895603-11895622 None:intergenic 40.0%
TAGAAGAGACTGAGACTTCT+TGG + chr5.2:11893550-11893569 MS.gene02465:CDS 40.0%
TAGCTGCCAAAAAGATAAGG+AGG + chr5.2:11894942-11894961 MS.gene02465:CDS 40.0%
TCAAAAACAAGTCTCCCAGA+TGG + chr5.2:11895539-11895558 MS.gene02465:CDS 40.0%
TCACTTGAACCTATTCAGCA+GGG + chr5.2:11893477-11893496 MS.gene02465:CDS 40.0%
TGAGGAAAAGATGTAGGAGT+TGG - chr5.2:11895388-11895407 None:intergenic 40.0%
TGCTGGTGCCTAAATTTCAA+GGG + chr5.2:11895577-11895596 MS.gene02465:CDS 40.0%
TTGAGTACCAGAGACTCAAA+TGG - chr5.2:11895523-11895542 None:intergenic 40.0%
! TTTTCCAACATACGCATTGC+TGG - chr5.2:11895020-11895039 None:intergenic 40.0%
AACCTATTCAGCAGGGACAA+TGG + chr5.2:11893484-11893503 MS.gene02465:CDS 45.0%
AATGAAATCTCCTGCTGGAC+CGG - chr5.2:11895213-11895232 None:intergenic 45.0%
ACAGAAATTGGCTGAACCTG+TGG + chr5.2:11894786-11894805 MS.gene02465:intron 45.0%
ACCTATTCAGCAGGGACAAT+GGG + chr5.2:11893485-11893504 MS.gene02465:CDS 45.0%
ATAACCTTCTCTTGCTCTGC+AGG - chr5.2:11895673-11895692 None:intergenic 45.0%
CAGGAGATTTCATTCTAGGC+AGG + chr5.2:11895219-11895238 MS.gene02465:CDS 45.0%
CCAGCAGGAGATTTCATTCT+AGG + chr5.2:11895215-11895234 MS.gene02465:CDS 45.0%
CCTAGAATGAAATCTCCTGC+TGG - chr5.2:11895218-11895237 None:intergenic 45.0%
CGTCAATCTTCCACACTCTT+CGG - chr5.2:11893655-11893674 None:intergenic 45.0%
CTAAAATCCGACAGCCTCTA+GGG - chr5.2:11894584-11894603 None:intergenic 45.0%
GATACAGTGCTTCATCAGGA+GGG + chr5.2:11893820-11893839 MS.gene02465:CDS 45.0%
GTCAATCTTCCACACTCTTC+GGG - chr5.2:11893654-11893673 None:intergenic 45.0%
TAGTTACACGCTGGAACTCT+TGG - chr5.2:11895250-11895269 None:intergenic 45.0%
TATACCTGTCTCAGCTGTTC+AGG + chr5.2:11895348-11895367 MS.gene02465:CDS 45.0%
TCAAGCATATCGCAAAGGCT+TGG - chr5.2:11895762-11895781 None:intergenic 45.0%
TGAATGTTCTCCGCACTAGA+GGG + chr5.2:11895296-11895315 MS.gene02465:CDS 45.0%
TTCGACAAAAAAGGGAAGGG+AGG + chr5.2:11894488-11894507 MS.gene02465:intron 45.0%
! ATGGGATTGGTAATACGTCG+AGG + chr5.2:11893385-11893404 MS.gene02465:CDS 45.0%
! ATTGGTAATACGTCGAGGAG+AGG + chr5.2:11893390-11893409 MS.gene02465:CDS 45.0%
! GGTTGCCCTCCTTATCTTTT+TGG - chr5.2:11894951-11894970 None:intergenic 45.0%
! TCTAAAATCCGACAGCCTCT+AGG - chr5.2:11894585-11894604 None:intergenic 45.0%
! TGGAGGTTGGCTGTCATATA+TGG - chr5.2:11895164-11895183 None:intergenic 45.0%
!! CTCCTGATGAAGCACTGTAT+CGG - chr5.2:11893821-11893840 None:intergenic 45.0%
!!! GGATCTTTACCTTTTGGCTC+TGG - chr5.2:11895445-11895464 None:intergenic 45.0%
ACAAAAAAGGGAAGGGAGGC+GGG + chr5.2:11894492-11894511 MS.gene02465:intron 50.0%
ATCGGTTGAGGTGTATCCAC+AGG - chr5.2:11894805-11894824 None:intergenic 50.0%
CAAGTAGGCATTCACAGCGT+CGG + chr5.2:11893418-11893437 MS.gene02465:CDS 50.0%
CACTGTATCGGAGAATCACG+AGG - chr5.2:11893809-11893828 None:intergenic 50.0%
CGATACAGTGCTTCATCAGG+AGG + chr5.2:11893819-11893838 MS.gene02465:CDS 50.0%
CGTTCCAGCAATGCGTATGT+TGG + chr5.2:11895013-11895032 MS.gene02465:CDS 50.0%
CTCCGATACAGTGCTTCATC+AGG + chr5.2:11893816-11893835 MS.gene02465:CDS 50.0%
CTGAATGTTCTCCGCACTAG+AGG + chr5.2:11895295-11895314 MS.gene02465:CDS 50.0%
CTGTCTCAGCTGTTCAGGAA+GGG + chr5.2:11895353-11895372 MS.gene02465:CDS 50.0%
GACAAAAAAGGGAAGGGAGG+CGG + chr5.2:11894491-11894510 MS.gene02465:intron 50.0%
GCATATCGCAAAGGCTTGGA+AGG - chr5.2:11895758-11895777 None:intergenic 50.0%
GCGGAGAACATTCAGCTCAT+AGG - chr5.2:11895290-11895309 None:intergenic 50.0%
GCTGCTCAAGCATATCGCAA+AGG - chr5.2:11895767-11895786 None:intergenic 50.0%
GGAAGGCAGAGAGTGGATAA+CGG - chr5.2:11895741-11895760 None:intergenic 50.0%
TAATACGTCGAGGAGAGGTG+TGG + chr5.2:11893395-11893414 MS.gene02465:CDS 50.0%
TATGACAGCCAACCTCCACA+CGG + chr5.2:11895166-11895185 MS.gene02465:CDS 50.0%
TGCAGCTGTTCATGCCATCT+GGG - chr5.2:11895556-11895575 None:intergenic 50.0%
TGTCTCAGCTGTTCAGGAAG+GGG + chr5.2:11895354-11895373 MS.gene02465:CDS 50.0%
TTCTCCTGCAGAGCAAGAGA+AGG + chr5.2:11895666-11895685 MS.gene02465:CDS 50.0%
TTGCAGCTGTTCATGCCATC+TGG - chr5.2:11895557-11895576 None:intergenic 50.0%
TTTCAAGGGCCGTGTTACAG+TGG + chr5.2:11895591-11895610 MS.gene02465:CDS 50.0%
AACCAAATAGCCGGTCCAGC+AGG + chr5.2:11895200-11895219 MS.gene02465:CDS 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG - chr5.2:11895748-11895767 None:intergenic 55.0%
ATCGGAGAATCACGAGGACC+CGG - chr5.2:11893803-11893822 None:intergenic 55.0%
CCAAGGGCCATTTGAGTCTC+TGG + chr5.2:11895513-11895532 MS.gene02465:CDS 55.0%
CCAGAGACTCAAATGGCCCT+TGG - chr5.2:11895516-11895535 None:intergenic 55.0%
CCTGTCTCAGCTGTTCAGGA+AGG + chr5.2:11895352-11895371 MS.gene02465:CDS 55.0%
CCTTCCTGAACAGCTGAGAC+AGG - chr5.2:11895355-11895374 None:intergenic 55.0%
GAAACGACAACAGCACGTGC+AGG - chr5.2:11893576-11893595 None:intergenic 55.0%
GCCCATTGTCCCTGCTGAAT+AGG - chr5.2:11893489-11893508 None:intergenic 55.0%
GGCATGAACAGCTGCAATGC+TGG + chr5.2:11895560-11895579 MS.gene02465:CDS 55.0%
GGTTGTATTCCAGCTCCGTG+TGG - chr5.2:11895184-11895203 None:intergenic 55.0%
GTCTCAGCTGTTCAGGAAGG+GGG + chr5.2:11895355-11895374 MS.gene02465:CDS 55.0%
GTTCAGACTCCCGAAGAGTG+TGG + chr5.2:11893642-11893661 MS.gene02465:CDS 55.0%
TGTATTCCAGCTCCGTGTGG+AGG - chr5.2:11895181-11895200 None:intergenic 55.0%
TTCAACCCTCGCAGAGTTGC+CGG + chr5.2:11895483-11895502 MS.gene02465:CDS 55.0%
TTCTTCTCGGCCCTCTAGTG+CGG - chr5.2:11895309-11895328 None:intergenic 55.0%
!! AAAGTGCCGGTTCACCCTAG+AGG + chr5.2:11894567-11894586 MS.gene02465:intron 55.0%
!! AATGGCCCTTGGCTCTGAAC+CGG - chr5.2:11895505-11895524 None:intergenic 55.0%
!! AGTTGCCGGTTCAGAGCCAA+GGG + chr5.2:11895497-11895516 MS.gene02465:CDS 55.0%
CGGTTCACCCTAGAGGCTGT+CGG + chr5.2:11894574-11894593 MS.gene02465:intron 60.0%
CTCCTGCTGGACCGGCTATT+TGG - chr5.2:11895205-11895224 None:intergenic 60.0%
CTGAACCGGCAACTCTGCGA+GGG - chr5.2:11895491-11895510 None:intergenic 60.0%
GCGTCAGCACCAGAGCCAAA+AGG + chr5.2:11895433-11895452 MS.gene02465:CDS 60.0%
TCTGAACCGGCAACTCTGCG+AGG - chr5.2:11895492-11895511 None:intergenic 60.0%
TTCCAGCTCCGTGTGGAGGT+TGG - chr5.2:11895177-11895196 None:intergenic 60.0%
! CGAGGAGAGGTGTGGCAAGT+AGG + chr5.2:11893403-11893422 MS.gene02465:CDS 60.0%
!! CGACAGCCTCTAGGGTGAAC+CGG - chr5.2:11894576-11894595 None:intergenic 60.0%
!! GAGTTGCCGGTTCAGAGCCA+AGG + chr5.2:11895496-11895515 MS.gene02465:CDS 60.0%
AGCCAACCTCCACACGGAGC+TGG + chr5.2:11895172-11895191 MS.gene02465:CDS 65.0%
AGGGAAGGGAGGCGGGAGTA+TGG + chr5.2:11894499-11894518 MS.gene02465:intron 65.0%
! GGGAAGGGAGGCGGGAGTAT+GGG + chr5.2:11894500-11894519 MS.gene02465:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 11893378 11895813 11893378 ID=MS.gene02465
chr5.2 mRNA 11893378 11895813 11893378 ID=MS.gene02465.t1;Parent=MS.gene02465
chr5.2 exon 11893378 11893695 11893378 ID=MS.gene02465.t1.exon1;Parent=MS.gene02465.t1
chr5.2 CDS 11893378 11893695 11893378 ID=cds.MS.gene02465.t1;Parent=MS.gene02465.t1
chr5.2 exon 11893800 11893887 11893800 ID=MS.gene02465.t1.exon2;Parent=MS.gene02465.t1
chr5.2 CDS 11893800 11893887 11893800 ID=cds.MS.gene02465.t1;Parent=MS.gene02465.t1
chr5.2 exon 11894915 11895044 11894915 ID=MS.gene02465.t1.exon3;Parent=MS.gene02465.t1
chr5.2 CDS 11894915 11895044 11894915 ID=cds.MS.gene02465.t1;Parent=MS.gene02465.t1
chr5.2 exon 11895135 11895813 11895135 ID=MS.gene02465.t1.exon4;Parent=MS.gene02465.t1
chr5.2 CDS 11895135 11895813 11895135 ID=cds.MS.gene02465.t1;Parent=MS.gene02465.t1
Gene Sequence

>MS.gene02465

ATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACTGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGATTGACGTTTCCTATTTCGTTAAAGCAGGTGATTAATTCTTCACTCCTTTTTTGGCGTAATTGTTGTTTTTCGCTGCTTATCCATTTTGGTTGTTCTGTATCTTATGCTCTCTACTTTTTGTTTATGAATAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGACTGGTGCCATGTAAGTTTGCTTCAATGTGGATAATGTTGCAGATGTAAACAATTTTTTTCATTTTTTTTTCTCAAAGGGTGTCATCTTGCATTTGAATTTTGAATCACTTTTGAAAACTTGGAGTTTATGAATTTAGATCTTGAACGGCTATTTTATTGCACTAAATATGTAGGGTTTTTCATATATAAAACAAATCACTACACATCACAATTACGTCATCATCTTGAGAACTTTCTCAAATTAATTACTTGGTGTTCGAACATGTGCATTACATGGTTTCGAACACGTGCACATGTGTGAGATATTTTAAATAAGAAATATACAAAATCGATTTTCTAAATCAAATTCACTACACATCACGATTACGTCATCATCTTGAGAACTTTCTTAAATTAATTACACGTGCATTATTTGGTACTCGAACACGTGCACATGTGTGAGATATTCTAAATAATAAATAGACAAAATTGATTTTTTTTTTATTGTAATGCTAAATTTTAGGGCTAATTCTACGGCGTAGACCGCATCAGACCAATACTTGAAAATTGCTTAAAACTGTGATGCGATCGACATTGCCTCATAGTTAAGAAATTACTTGTTCGATGTTGATTCGACAAAAAAGGGAAGGGAGGCGGGAGTATGGGTGCCTCAACTCAACTCATTTGTTTCCCTTTATTTGGGTGATTTTAAAGTGCCGGTTCACCCTAGAGGCTGTCGGATTTTAGATTTATATAAATGAACTTTTCTTTTCTTTCGTTGAAAAACTAGAAGTGCATTTCTTTGGAGTCATAGTATGAAATGGGATAATGAAAAAATGAGTCATAAAAAACTGCAAATAGATGTTCTTTTTCATTGTTGGATTGAAGTTACAACATATTTTTTTTTTTTAACTTCTGACTTGAATGGGACAGAAATTGGCTGAACCTGTGGATACACCTCAACCGATTTGTGCTTTGTTTTCCTCCGTTCAATTCACCTTAATGATTTTGAAATTGGTATTTGAGAAGCTTGTTCTCTTCTGTTTTTTCTTATACAGCGGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTAAGTTTTGGTCGATAGAAATTTTACTTGCCCACTTTTCAAATTTCCAACACACTATTTTATCTGCTAACTGATGATAAATTTTGACAGGTCTAACTTTTTGGGAACCAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATACAACCAAATAGCCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAACATTTTTGTTCTGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGCCGGTTCAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA

Protein sequence

>MS.gene02465.t1

MRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSRQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELPVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE