Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02465.t1 | XP_003612033.1 | 97.5 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 2.20E-228 | 801.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02465.t1 | Q6Z2G9 | 62.1 | 422 | 136 | 7 | 1 | 404 | 13 | 428 | 8.7e-141 | 501.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02465.t1 | G7KEX1 | 97.5 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 1.6e-228 | 801.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene02465.t1 | TF | TUB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene02465 | MS.gene24262 | PPI |
MS.gene02465 | MS.gene90691 | PPI |
MS.gene02465 | MS.gene27297 | PPI |
MS.gene02465 | MS.gene26978 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02465.t1 | MTR_5g020580 | 97.525 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 0.0 | 819 |
MS.gene02465.t1 | MTR_8g077195 | 74.505 | 404 | 99 | 2 | 1 | 404 | 13 | 412 | 0.0 | 631 |
MS.gene02465.t1 | MTR_1g022370 | 62.796 | 422 | 127 | 8 | 1 | 404 | 13 | 422 | 0.0 | 510 |
MS.gene02465.t1 | MTR_8g077620 | 57.855 | 401 | 134 | 9 | 1 | 395 | 13 | 384 | 3.07e-156 | 446 |
MS.gene02465.t1 | MTR_8g077675 | 58.354 | 401 | 145 | 9 | 1 | 397 | 13 | 395 | 2.70e-155 | 444 |
MS.gene02465.t1 | MTR_2g007930 | 54.976 | 422 | 168 | 11 | 1 | 404 | 10 | 427 | 3.09e-150 | 432 |
MS.gene02465.t1 | MTR_2g020280 | 57.182 | 369 | 151 | 3 | 36 | 404 | 32 | 393 | 3.07e-149 | 428 |
MS.gene02465.t1 | MTR_1g098790 | 53.037 | 428 | 171 | 11 | 1 | 404 | 10 | 431 | 1.08e-145 | 421 |
MS.gene02465.t1 | MTR_1g088960 | 53.846 | 403 | 176 | 6 | 2 | 404 | 10 | 402 | 3.34e-144 | 416 |
MS.gene02465.t1 | MTR_2g076200 | 50.829 | 362 | 146 | 2 | 43 | 404 | 42 | 371 | 3.27e-127 | 372 |
MS.gene02465.t1 | MTR_8g077650 | 51.786 | 392 | 113 | 12 | 25 | 401 | 3 | 333 | 5.32e-119 | 349 |
MS.gene02465.t1 | MTR_2g020280 | 58.140 | 301 | 119 | 3 | 104 | 404 | 1 | 294 | 3.51e-118 | 345 |
MS.gene02465.t1 | MTR_2g076210 | 44.772 | 373 | 167 | 6 | 36 | 404 | 30 | 367 | 4.32e-101 | 305 |
MS.gene02465.t1 | MTR_8g077640 | 59.242 | 211 | 60 | 5 | 4 | 195 | 57 | 260 | 6.34e-65 | 212 |
MS.gene02465.t1 | MTR_8g077640 | 55.556 | 117 | 51 | 1 | 279 | 394 | 267 | 383 | 1.75e-33 | 129 |
MS.gene02465.t1 | MTR_1g023800 | 52.667 | 150 | 66 | 2 | 1 | 149 | 13 | 158 | 1.25e-49 | 165 |
MS.gene02465.t1 | MTR_0210s0010 | 71.134 | 97 | 22 | 1 | 86 | 182 | 9 | 99 | 2.50e-37 | 131 |
MS.gene02465.t1 | MTR_0479s0040 | 74.286 | 70 | 12 | 1 | 102 | 171 | 12 | 75 | 2.58e-25 | 98.6 |
MS.gene02465.t1 | MTR_2g105390 | 36.697 | 109 | 54 | 4 | 301 | 403 | 260 | 359 | 1.93e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02465.t1 | AT2G18280 | 63.547 | 406 | 121 | 7 | 1 | 404 | 13 | 393 | 4.08e-177 | 499 |
MS.gene02465.t1 | AT2G18280 | 63.547 | 406 | 121 | 7 | 1 | 404 | 13 | 393 | 4.08e-177 | 499 |
MS.gene02465.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 16 | 388 | 5.55e-155 | 443 |
MS.gene02465.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 40 | 412 | 9.17e-155 | 443 |
MS.gene02465.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 41 | 413 | 9.39e-155 | 443 |
MS.gene02465.t1 | AT1G25280 | 53.899 | 436 | 169 | 8 | 1 | 404 | 10 | 445 | 1.69e-151 | 436 |
MS.gene02465.t1 | AT2G47900 | 54.433 | 406 | 175 | 4 | 1 | 404 | 10 | 407 | 2.27e-150 | 432 |
MS.gene02465.t1 | AT2G47900 | 54.568 | 405 | 175 | 4 | 1 | 404 | 10 | 406 | 3.79e-150 | 431 |
MS.gene02465.t1 | AT2G47900 | 54.568 | 405 | 175 | 4 | 1 | 404 | 10 | 406 | 3.79e-150 | 431 |
MS.gene02465.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene02465.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene02465.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene02465.t1 | AT1G43640 | 50.000 | 430 | 179 | 11 | 1 | 404 | 10 | 429 | 1.46e-140 | 408 |
MS.gene02465.t1 | AT5G18680 | 53.887 | 373 | 147 | 7 | 39 | 404 | 35 | 389 | 2.52e-130 | 380 |
MS.gene02465.t1 | AT1G43640 | 52.151 | 372 | 147 | 9 | 55 | 404 | 1 | 363 | 1.37e-128 | 375 |
MS.gene02465.t1 | AT3G06380 | 51.671 | 389 | 168 | 7 | 19 | 404 | 9 | 380 | 2.76e-128 | 375 |
MS.gene02465.t1 | AT1G53320 | 51.934 | 362 | 148 | 3 | 43 | 404 | 44 | 379 | 1.78e-124 | 365 |
MS.gene02465.t1 | AT5G18680 | 54.369 | 309 | 117 | 6 | 102 | 404 | 7 | 297 | 1.22e-105 | 314 |
MS.gene02465.t1 | AT3G06380 | 54.153 | 301 | 119 | 6 | 106 | 404 | 5 | 288 | 1.71e-101 | 303 |
MS.gene02465.t1 | AT1G25280 | 56.180 | 267 | 93 | 6 | 162 | 404 | 1 | 267 | 8.15e-95 | 285 |
MS.gene02465.t1 | AT1G25280 | 56.180 | 267 | 93 | 6 | 162 | 404 | 1 | 267 | 8.15e-95 | 285 |
MS.gene02465.t1 | AT1G61940 | 50.575 | 87 | 43 | 0 | 46 | 132 | 1 | 87 | 3.82e-26 | 106 |
MS.gene02465.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 46 | 106 | 1 | 61 | 5.83e-16 | 77.4 |
Find 105 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCTGCTGGACCGGCTATT+TGG | 0.209525 | 5.2:-11895202 | None:intergenic |
CCAATTGGATCTTTACCTTT+TGG | 0.222216 | 5.2:-11895448 | None:intergenic |
TAACACGGCCCTTGAAATTT+AGG | 0.254077 | 5.2:-11895585 | None:intergenic |
CCAGCAGGAGATTTCATTCT+AGG | 0.267212 | 5.2:+11895215 | MS.gene02465:CDS |
TGGAAAAGATATATTTACTA+TGG | 0.274718 | 5.2:+11895711 | MS.gene02465:CDS |
CACAGACTTCATCATATCTT+TGG | 0.281729 | 5.2:+11894973 | MS.gene02465:CDS |
ATCACCTGCTTTAACGAAAT+AGG | 0.313540 | 5.2:-11893678 | None:intergenic |
TTGCAGCTGTTCATGCCATC+TGG | 0.337933 | 5.2:-11895554 | None:intergenic |
ATCTTGCAGTTTGGAAAGAT+TGG | 0.342353 | 5.2:+11895691 | MS.gene02465:CDS |
CGTCAATCTTCCACACTCTT+CGG | 0.347596 | 5.2:-11893652 | None:intergenic |
TTCAACCCTCGCAGAGTTGC+CGG | 0.349688 | 5.2:+11895483 | MS.gene02465:CDS |
GTCAATCTTCCACACTCTTC+GGG | 0.352453 | 5.2:-11893651 | None:intergenic |
GAGAAGGTTATCTTGCAGTT+TGG | 0.354935 | 5.2:+11895682 | MS.gene02465:CDS |
TATACCTGTCTCAGCTGTTC+AGG | 0.357164 | 5.2:+11895348 | MS.gene02465:CDS |
TAGAAGAGACTGAGACTTCT+TGG | 0.372030 | 5.2:+11893550 | MS.gene02465:CDS |
TCTGCATATCTATTGTACTA+TGG | 0.382229 | 5.2:+11893854 | MS.gene02465:CDS |
ATGATGCAATTCATTCTTCT+CGG | 0.382856 | 5.2:-11895319 | None:intergenic |
CCAAGGGCCATTTGAGTCTC+TGG | 0.405945 | 5.2:+11895513 | MS.gene02465:CDS |
ATAACCTTCTCTTGCTCTGC+AGG | 0.415381 | 5.2:-11895670 | None:intergenic |
ATGCTGGTGCCTAAATTTCA+AGG | 0.430024 | 5.2:+11895576 | MS.gene02465:CDS |
TGAGGAAAAGATGTAGGAGT+TGG | 0.437219 | 5.2:-11895385 | None:intergenic |
ACCTATTCAGCAGGGACAAT+GGG | 0.444059 | 5.2:+11893485 | MS.gene02465:CDS |
AGTGATGTTAGAGTGATATC+AGG | 0.447610 | 5.2:-11893459 | None:intergenic |
GAATTGCTTAAATCTCCAAT+TGG | 0.451744 | 5.2:-11895463 | None:intergenic |
TGGAGGTTGGCTGTCATATA+TGG | 0.452519 | 5.2:-11895161 | None:intergenic |
CTCCGATACAGTGCTTCATC+AGG | 0.459633 | 5.2:+11893816 | MS.gene02465:CDS |
GCCCATTGTCCCTGCTGAAT+AGG | 0.468212 | 5.2:-11893486 | None:intergenic |
CCAAAAGGTAAAGATCCAAT+TGG | 0.470093 | 5.2:+11895448 | MS.gene02465:CDS |
ATCACTTGAACCTATTCAGC+AGG | 0.471218 | 5.2:+11893476 | MS.gene02465:CDS |
TAGTTACACGCTGGAACTCT+TGG | 0.471948 | 5.2:-11895247 | None:intergenic |
AGCCAACCTCCACACGGAGC+TGG | 0.473234 | 5.2:+11895172 | MS.gene02465:CDS |
GGCATGAACAGCTGCAATGC+TGG | 0.474704 | 5.2:+11895560 | MS.gene02465:CDS |
AATGAAATCTCCTGCTGGAC+CGG | 0.476146 | 5.2:-11895210 | None:intergenic |
GCGGAGAACATTCAGCTCAT+AGG | 0.477645 | 5.2:-11895287 | None:intergenic |
AACTCAAGGAGATGAGGGAT+GGG | 0.484739 | 5.2:+11893367 | None:intergenic |
CTGAATGTTCTCCGCACTAG+AGG | 0.484848 | 5.2:+11895295 | MS.gene02465:CDS |
CGTTCCAGCAATGCGTATGT+TGG | 0.488866 | 5.2:+11895013 | MS.gene02465:CDS |
AACCAAATAGCCGGTCCAGC+AGG | 0.493265 | 5.2:+11895200 | MS.gene02465:CDS |
AATGGCCCTTGGCTCTGAAC+CGG | 0.498889 | 5.2:-11895502 | None:intergenic |
GTAATTTGAGGAAAAGATGT+AGG | 0.503684 | 5.2:-11895391 | None:intergenic |
GAACTCAAGGAGATGAGGGA+TGG | 0.505860 | 5.2:+11893366 | None:intergenic |
TGCAGCTGTTCATGCCATCT+GGG | 0.506117 | 5.2:-11895553 | None:intergenic |
GTTTCCTATTTCGTTAAAGC+AGG | 0.506221 | 5.2:+11893674 | MS.gene02465:CDS |
AAATGTTCATCAGTAATTTG+AGG | 0.509198 | 5.2:-11895403 | None:intergenic |
CCTTCCTGAACAGCTGAGAC+AGG | 0.514005 | 5.2:-11895352 | None:intergenic |
GAGTTGCCGGTTCAGAGCCA+AGG | 0.518280 | 5.2:+11895496 | MS.gene02465:CDS |
CAGGAGATTTCATTCTAGGC+AGG | 0.528326 | 5.2:+11895219 | MS.gene02465:CDS |
CATGGATCTCATTCACATGC+TGG | 0.528401 | 5.2:-11895799 | None:intergenic |
TTGAGTACCAGAGACTCAAA+TGG | 0.530012 | 5.2:-11895520 | None:intergenic |
AGTTAAGAACTTTCAACTTG+TGG | 0.534362 | 5.2:+11895618 | MS.gene02465:CDS |
GAAACGACAACAGCACGTGC+AGG | 0.536741 | 5.2:-11893573 | None:intergenic |
CCTAGAATGAAATCTCCTGC+TGG | 0.538624 | 5.2:-11895215 | None:intergenic |
CCTGTCTCAGCTGTTCAGGA+AGG | 0.540458 | 5.2:+11895352 | MS.gene02465:CDS |
CTGTCTCAGCTGTTCAGGAA+GGG | 0.541956 | 5.2:+11895353 | MS.gene02465:CDS |
CGAGGAGAGGTGTGGCAAGT+AGG | 0.542255 | 5.2:+11893403 | MS.gene02465:CDS |
GCATATCGCAAAGGCTTGGA+AGG | 0.543599 | 5.2:-11895755 | None:intergenic |
GCTGTCATATATGGTGAACT+TGG | 0.544644 | 5.2:-11895152 | None:intergenic |
GTGCTTCTGTGTGTAAATCA+TGG | 0.549837 | 5.2:+11893598 | MS.gene02465:CDS |
CCAGAGACTCAAATGGCCCT+TGG | 0.550663 | 5.2:-11895513 | None:intergenic |
TTCCAGCTCCGTGTGGAGGT+TGG | 0.551308 | 5.2:-11895174 | None:intergenic |
AACCTATTCAGCAGGGACAA+TGG | 0.551680 | 5.2:+11893484 | MS.gene02465:CDS |
TCTGAACCGGCAACTCTGCG+AGG | 0.556736 | 5.2:-11895489 | None:intergenic |
AAGGAGATGAGGGATGGGAT+TGG | 0.557067 | 5.2:+11893372 | None:intergenic |
TGCTACTTGATATAATTCGA+AGG | 0.558581 | 5.2:+11893526 | MS.gene02465:CDS |
TGTCTCAGCTGTTCAGGAAG+GGG | 0.560697 | 5.2:+11895354 | MS.gene02465:CDS |
ATCGGAGAATCACGAGGACC+CGG | 0.561657 | 5.2:-11893800 | None:intergenic |
CTCCTGATGAAGCACTGTAT+CGG | 0.562380 | 5.2:-11893818 | None:intergenic |
TTCTTCTCGGCCCTCTAGTG+CGG | 0.564773 | 5.2:-11895306 | None:intergenic |
GTCTCAGCTGTTCAGGAAGG+GGG | 0.566290 | 5.2:+11895355 | MS.gene02465:CDS |
CTGAACCGGCAACTCTGCGA+GGG | 0.569008 | 5.2:-11895488 | None:intergenic |
ATATCTATTGTACTATGGAC+TGG | 0.572719 | 5.2:+11893859 | MS.gene02465:CDS |
GCTACTTGATATAATTCGAA+GGG | 0.575810 | 5.2:+11893527 | MS.gene02465:CDS |
GCGTCAGCACCAGAGCCAAA+AGG | 0.578551 | 5.2:+11895433 | MS.gene02465:CDS |
TCAAGCATATCGCAAAGGCT+TGG | 0.579509 | 5.2:-11895759 | None:intergenic |
AACATTCAGCTCATAGGCAA+TGG | 0.582469 | 5.2:-11895281 | None:intergenic |
CTGGAATACAACCAAATAGC+CGG | 0.589720 | 5.2:+11895191 | MS.gene02465:CDS |
CGATACAGTGCTTCATCAGG+AGG | 0.590035 | 5.2:+11893819 | MS.gene02465:CDS |
CTGAACAATCTCTTGTGTAA+CGG | 0.594307 | 5.2:-11893625 | None:intergenic |
TTCTCCTGCAGAGCAAGAGA+AGG | 0.597006 | 5.2:+11895666 | MS.gene02465:CDS |
ATGCGTATGTTGGAAAACTC+AGG | 0.602255 | 5.2:+11895023 | MS.gene02465:CDS |
AGTTGCCGGTTCAGAGCCAA+GGG | 0.602888 | 5.2:+11895497 | MS.gene02465:CDS |
GCAGGAGAAACATTATGAGA+TGG | 0.604319 | 5.2:-11895652 | None:intergenic |
CAAGTAGGCATTCACAGCGT+CGG | 0.608761 | 5.2:+11893418 | MS.gene02465:CDS |
GGAAGGCAGAGAGTGGATAA+CGG | 0.610357 | 5.2:-11895738 | None:intergenic |
GCTGCTCAAGCATATCGCAA+AGG | 0.610612 | 5.2:-11895764 | None:intergenic |
TTTCAAGGGCCGTGTTACAG+TGG | 0.611483 | 5.2:+11895591 | MS.gene02465:CDS |
TGAATGTTCTCCGCACTAGA+GGG | 0.618617 | 5.2:+11895296 | MS.gene02465:CDS |
AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | 5.2:-11895745 | None:intergenic |
TTCTGTGTGTAAATCATGGA+GGG | 0.630242 | 5.2:+11893602 | MS.gene02465:CDS |
AGATATGATGAAGTCTGTGC+CGG | 0.635175 | 5.2:-11894969 | None:intergenic |
GTTCAGACTCCCGAAGAGTG+TGG | 0.642949 | 5.2:+11893642 | MS.gene02465:CDS |
TGCTGGTGCCTAAATTTCAA+GGG | 0.642974 | 5.2:+11895577 | MS.gene02465:CDS |
TAACTGAAGCCACTGTAACA+CGG | 0.643817 | 5.2:-11895600 | None:intergenic |
TGTATTCCAGCTCCGTGTGG+AGG | 0.645160 | 5.2:-11895178 | None:intergenic |
CTTCTGTGTGTAAATCATGG+AGG | 0.649209 | 5.2:+11893601 | MS.gene02465:CDS |
ATTGGTAATACGTCGAGGAG+AGG | 0.649495 | 5.2:+11893390 | MS.gene02465:CDS |
ATATCAAGTAGCAATTCAGA+TGG | 0.650336 | 5.2:-11893516 | None:intergenic |
GGTTGTATTCCAGCTCCGTG+TGG | 0.669899 | 5.2:-11895181 | None:intergenic |
CACTGTATCGGAGAATCACG+AGG | 0.670191 | 5.2:-11893806 | None:intergenic |
GATACAGTGCTTCATCAGGA+GGG | 0.688983 | 5.2:+11893820 | MS.gene02465:CDS |
TCACTTGAACCTATTCAGCA+GGG | 0.690245 | 5.2:+11893477 | MS.gene02465:CDS |
TAATACGTCGAGGAGAGGTG+TGG | 0.694801 | 5.2:+11893395 | MS.gene02465:CDS |
CTAACAATATAGTTACACGC+TGG | 0.696992 | 5.2:-11895256 | None:intergenic |
ATGGGATTGGTAATACGTCG+AGG | 0.700501 | 5.2:+11893385 | MS.gene02465:CDS |
TATGACAGCCAACCTCCACA+CGG | 0.700970 | 5.2:+11895166 | MS.gene02465:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTGTAATGCTAAATTTTA+GGG | + | chr5.2:11894359-11894378 | MS.gene02465:intron | 15.0% |
!!! | TTATTGTAATGCTAAATTTT+AGG | + | chr5.2:11894358-11894377 | MS.gene02465:intron | 15.0% |
!!! | TTTCATTTTTTTTTCTCAAA+GGG | + | chr5.2:11893934-11893953 | MS.gene02465:intron | 15.0% |
!!! | TTTTCATTTTTTTTTCTCAA+AGG | + | chr5.2:11893933-11893952 | MS.gene02465:intron | 15.0% |
!! | ACTTTCTCAAATTAATTACT+TGG | + | chr5.2:11894108-11894127 | MS.gene02465:intron | 20.0% |
!! | TACCAATTTCAAAATCATTA+AGG | - | chr5.2:11894857-11894876 | None:intergenic | 20.0% |
!! | TGGAAAAGATATATTTACTA+TGG | + | chr5.2:11895711-11895730 | MS.gene02465:CDS | 20.0% |
!! | TTATGAATTTAGATCTTGAA+CGG | + | chr5.2:11894003-11894022 | MS.gene02465:intron | 20.0% |
!! | TTTATTGCACTAAATATGTA+GGG | + | chr5.2:11894030-11894049 | MS.gene02465:intron | 20.0% |
!!! | TTTAAAATCACCCAAATAAA+GGG | - | chr5.2:11894550-11894569 | None:intergenic | 20.0% |
!!! | TTTAAGCAATTTTCAAGTAT+TGG | - | chr5.2:11894413-11894432 | None:intergenic | 20.0% |
!!! | TTTTATTGCACTAAATATGT+AGG | + | chr5.2:11894029-11894048 | MS.gene02465:intron | 20.0% |
! | AAATGTTCATCAGTAATTTG+AGG | - | chr5.2:11895406-11895425 | None:intergenic | 25.0% |
! | AATCATTAAGGTGAATTGAA+CGG | - | chr5.2:11894845-11894864 | None:intergenic | 25.0% |
! | CAAGTAATTTCTTAACTATG+AGG | - | chr5.2:11894457-11894476 | None:intergenic | 25.0% |
! | TTAATTACACGTGCATTATT+TGG | + | chr5.2:11894271-11894290 | MS.gene02465:intron | 25.0% |
!! | TCATTTGTTTCCCTTTATTT+GGG | + | chr5.2:11894537-11894556 | MS.gene02465:intron | 25.0% |
!!! | AAATTTTAGGGCTAATTCTA+CGG | + | chr5.2:11894371-11894390 | MS.gene02465:intron | 25.0% |
!!! | AACTGATGATAAATTTTGAC+AGG | + | chr5.2:11895113-11895132 | MS.gene02465:intron | 25.0% |
!!! | ACTTTTTGTTTATGAATAGC+CGG | + | chr5.2:11893781-11893800 | MS.gene02465:intron | 25.0% |
!!! | CACCTTAATGATTTTGAAAT+TGG | + | chr5.2:11894852-11894871 | MS.gene02465:intron | 25.0% |
!!! | CTTTAAAATCACCCAAATAA+AGG | - | chr5.2:11894551-11894570 | None:intergenic | 25.0% |
!!! | TAGATGTTCTTTTTCATTGT+TGG | + | chr5.2:11894715-11894734 | MS.gene02465:intron | 25.0% |
!!! | TTAATTCTTCACTCCTTTTT+TGG | + | chr5.2:11893700-11893719 | MS.gene02465:intron | 25.0% |
!!! | TTCTGTTTTTTCTTATACAG+CGG | + | chr5.2:11894895-11894914 | MS.gene02465:intron | 25.0% |
!!! | TTGAATCACTTTTGAAAACT+TGG | + | chr5.2:11893977-11893996 | MS.gene02465:intron | 25.0% |
!!! | TTTTAACTTCTGACTTGAAT+GGG | + | chr5.2:11894763-11894782 | MS.gene02465:intron | 25.0% |
!!! | TTTTTAACTTCTGACTTGAA+TGG | + | chr5.2:11894762-11894781 | MS.gene02465:intron | 25.0% |
AACAACAATTACGCCAAAAA+AGG | - | chr5.2:11893716-11893735 | None:intergenic | 30.0% | |
AAGATACAGAACAACCAAAA+TGG | - | chr5.2:11893752-11893771 | None:intergenic | 30.0% | |
AGTTAAGAACTTTCAACTTG+TGG | + | chr5.2:11895618-11895637 | MS.gene02465:CDS | 30.0% | |
ATATCAAGTAGCAATTCAGA+TGG | - | chr5.2:11893519-11893538 | None:intergenic | 30.0% | |
ATATCTATTGTACTATGGAC+TGG | + | chr5.2:11893859-11893878 | MS.gene02465:CDS | 30.0% | |
ATGATGCAATTCATTCTTCT+CGG | - | chr5.2:11895322-11895341 | None:intergenic | 30.0% | |
CTCATTTGTTTCCCTTTATT+TGG | + | chr5.2:11894536-11894555 | MS.gene02465:intron | 30.0% | |
GAATTGCTTAAATCTCCAAT+TGG | - | chr5.2:11895466-11895485 | None:intergenic | 30.0% | |
GCTACTTGATATAATTCGAA+GGG | + | chr5.2:11893527-11893546 | MS.gene02465:CDS | 30.0% | |
GTAATTTGAGGAAAAGATGT+AGG | - | chr5.2:11895394-11895413 | None:intergenic | 30.0% | |
GTGTTGGAAATTTGAAAAGT+GGG | - | chr5.2:11895078-11895097 | None:intergenic | 30.0% | |
TAGCAGATAAAATAGTGTGT+TGG | - | chr5.2:11895094-11895113 | None:intergenic | 30.0% | |
TATTAGCTGCCAAAAAGATA+AGG | + | chr5.2:11894939-11894958 | MS.gene02465:CDS | 30.0% | |
TCTGCATATCTATTGTACTA+TGG | + | chr5.2:11893854-11893873 | MS.gene02465:CDS | 30.0% | |
TGTGTTGGAAATTTGAAAAG+TGG | - | chr5.2:11895079-11895098 | None:intergenic | 30.0% | |
TTGGAGTCATAGTATGAAAT+GGG | + | chr5.2:11894659-11894678 | MS.gene02465:intron | 30.0% | |
! | AAACTAGAAGTGCATTTCTT+TGG | + | chr5.2:11894640-11894659 | MS.gene02465:intron | 30.0% |
! | TGCTACTTGATATAATTCGA+AGG | + | chr5.2:11893526-11893545 | MS.gene02465:CDS | 30.0% |
! | TTTGACAGGTCTAACTTTTT+GGG | + | chr5.2:11895127-11895146 | MS.gene02465:intron | 30.0% |
! | TTTGGAGTCATAGTATGAAA+TGG | + | chr5.2:11894658-11894677 | MS.gene02465:intron | 30.0% |
! | TTTTGACAGGTCTAACTTTT+TGG | + | chr5.2:11895126-11895145 | MS.gene02465:intron | 30.0% |
!! | CTTTTTGTTTATGAATAGCC+GGG | + | chr5.2:11893782-11893801 | MS.gene02465:intron | 30.0% |
!! | GATGTTGATTCGACAAAAAA+GGG | + | chr5.2:11894480-11894499 | MS.gene02465:intron | 30.0% |
AGTGATGTTAGAGTGATATC+AGG | - | chr5.2:11893462-11893481 | None:intergenic | 35.0% | |
ATCACCTGCTTTAACGAAAT+AGG | - | chr5.2:11893681-11893700 | None:intergenic | 35.0% | |
ATCTTGCAGTTTGGAAAGAT+TGG | + | chr5.2:11895691-11895710 | MS.gene02465:CDS | 35.0% | |
CACAGACTTCATCATATCTT+TGG | + | chr5.2:11894973-11894992 | MS.gene02465:CDS | 35.0% | |
CACATTGAAGCAAACTTACA+TGG | - | chr5.2:11893887-11893906 | None:intergenic | 35.0% | |
CCAAAAGGTAAAGATCCAAT+TGG | + | chr5.2:11895448-11895467 | MS.gene02465:CDS | 35.0% | |
CTAACAATATAGTTACACGC+TGG | - | chr5.2:11895259-11895278 | None:intergenic | 35.0% | |
CTGAACAATCTCTTGTGTAA+CGG | - | chr5.2:11893628-11893647 | None:intergenic | 35.0% | |
GAGGAAAACAAAGCACAAAT+CGG | - | chr5.2:11894823-11894842 | None:intergenic | 35.0% | |
GTTTCCTATTTCGTTAAAGC+AGG | + | chr5.2:11893674-11893693 | MS.gene02465:CDS | 35.0% | |
TGATTCGACAAAAAAGGGAA+GGG | + | chr5.2:11894485-11894504 | MS.gene02465:intron | 35.0% | |
TTCTGTGTGTAAATCATGGA+GGG | + | chr5.2:11893602-11893621 | MS.gene02465:CDS | 35.0% | |
! | CATGTAAGTTTGCTTCAATG+TGG | + | chr5.2:11893885-11893904 | MS.gene02465:intron | 35.0% |
! | CCAATTGGATCTTTACCTTT+TGG | - | chr5.2:11895451-11895470 | None:intergenic | 35.0% |
! | GAAACAAATGAGTTGAGTTG+AGG | - | chr5.2:11894528-11894547 | None:intergenic | 35.0% |
! | TGGAAAACTCAGGTAAGTTT+TGG | + | chr5.2:11895033-11895052 | MS.gene02465:intron | 35.0% |
! | TTGATTCGACAAAAAAGGGA+AGG | + | chr5.2:11894484-11894503 | MS.gene02465:intron | 35.0% |
! | TTTTCGCTGCTTATCCATTT+TGG | + | chr5.2:11893735-11893754 | MS.gene02465:intron | 35.0% |
!! | CGATGTTGATTCGACAAAAA+AGG | + | chr5.2:11894479-11894498 | MS.gene02465:intron | 35.0% |
!! | TTTCAAGTATTGGTCTGATG+CGG | - | chr5.2:11894403-11894422 | None:intergenic | 35.0% |
!!! | TTTGGGTGATTTTAAAGTGC+CGG | + | chr5.2:11894554-11894573 | MS.gene02465:intron | 35.0% |
AAAAAGATAAGGAGGGCAAC+CGG | + | chr5.2:11894950-11894969 | MS.gene02465:CDS | 40.0% | |
AACAAAGCACAAATCGGTTG+AGG | - | chr5.2:11894817-11894836 | None:intergenic | 40.0% | |
AACATTCAGCTCATAGGCAA+TGG | - | chr5.2:11895284-11895303 | None:intergenic | 40.0% | |
AGATATGATGAAGTCTGTGC+CGG | - | chr5.2:11894972-11894991 | None:intergenic | 40.0% | |
AGCTGCCAAAAAGATAAGGA+GGG | + | chr5.2:11894943-11894962 | MS.gene02465:CDS | 40.0% | |
ATCACTTGAACCTATTCAGC+AGG | + | chr5.2:11893476-11893495 | MS.gene02465:CDS | 40.0% | |
ATGCGTATGTTGGAAAACTC+AGG | + | chr5.2:11895023-11895042 | MS.gene02465:CDS | 40.0% | |
ATGCTGGTGCCTAAATTTCA+AGG | + | chr5.2:11895576-11895595 | MS.gene02465:CDS | 40.0% | |
CATTAAGGTGAATTGAACGG+AGG | - | chr5.2:11894842-11894861 | None:intergenic | 40.0% | |
CTGGAATACAACCAAATAGC+CGG | + | chr5.2:11895191-11895210 | MS.gene02465:CDS | 40.0% | |
CTTCTGTGTGTAAATCATGG+AGG | + | chr5.2:11893601-11893620 | MS.gene02465:CDS | 40.0% | |
GACTTGAATGGGACAGAAAT+TGG | + | chr5.2:11894774-11894793 | MS.gene02465:intron | 40.0% | |
GAGAAGGTTATCTTGCAGTT+TGG | + | chr5.2:11895682-11895701 | MS.gene02465:CDS | 40.0% | |
GCAGGAGAAACATTATGAGA+TGG | - | chr5.2:11895655-11895674 | None:intergenic | 40.0% | |
GCTGTCATATATGGTGAACT+TGG | - | chr5.2:11895155-11895174 | None:intergenic | 40.0% | |
GTGCTTCTGTGTGTAAATCA+TGG | + | chr5.2:11893598-11893617 | MS.gene02465:CDS | 40.0% | |
GTTCGAACATGTGCATTACA+TGG | + | chr5.2:11894132-11894151 | MS.gene02465:intron | 40.0% | |
TAACACGGCCCTTGAAATTT+AGG | - | chr5.2:11895588-11895607 | None:intergenic | 40.0% | |
TAACTGAAGCCACTGTAACA+CGG | - | chr5.2:11895603-11895622 | None:intergenic | 40.0% | |
TAGAAGAGACTGAGACTTCT+TGG | + | chr5.2:11893550-11893569 | MS.gene02465:CDS | 40.0% | |
TAGCTGCCAAAAAGATAAGG+AGG | + | chr5.2:11894942-11894961 | MS.gene02465:CDS | 40.0% | |
TCAAAAACAAGTCTCCCAGA+TGG | + | chr5.2:11895539-11895558 | MS.gene02465:CDS | 40.0% | |
TCACTTGAACCTATTCAGCA+GGG | + | chr5.2:11893477-11893496 | MS.gene02465:CDS | 40.0% | |
TGAGGAAAAGATGTAGGAGT+TGG | - | chr5.2:11895388-11895407 | None:intergenic | 40.0% | |
TGCTGGTGCCTAAATTTCAA+GGG | + | chr5.2:11895577-11895596 | MS.gene02465:CDS | 40.0% | |
TTGAGTACCAGAGACTCAAA+TGG | - | chr5.2:11895523-11895542 | None:intergenic | 40.0% | |
! | TTTTCCAACATACGCATTGC+TGG | - | chr5.2:11895020-11895039 | None:intergenic | 40.0% |
AACCTATTCAGCAGGGACAA+TGG | + | chr5.2:11893484-11893503 | MS.gene02465:CDS | 45.0% | |
AATGAAATCTCCTGCTGGAC+CGG | - | chr5.2:11895213-11895232 | None:intergenic | 45.0% | |
ACAGAAATTGGCTGAACCTG+TGG | + | chr5.2:11894786-11894805 | MS.gene02465:intron | 45.0% | |
ACCTATTCAGCAGGGACAAT+GGG | + | chr5.2:11893485-11893504 | MS.gene02465:CDS | 45.0% | |
ATAACCTTCTCTTGCTCTGC+AGG | - | chr5.2:11895673-11895692 | None:intergenic | 45.0% | |
CAGGAGATTTCATTCTAGGC+AGG | + | chr5.2:11895219-11895238 | MS.gene02465:CDS | 45.0% | |
CCAGCAGGAGATTTCATTCT+AGG | + | chr5.2:11895215-11895234 | MS.gene02465:CDS | 45.0% | |
CCTAGAATGAAATCTCCTGC+TGG | - | chr5.2:11895218-11895237 | None:intergenic | 45.0% | |
CGTCAATCTTCCACACTCTT+CGG | - | chr5.2:11893655-11893674 | None:intergenic | 45.0% | |
CTAAAATCCGACAGCCTCTA+GGG | - | chr5.2:11894584-11894603 | None:intergenic | 45.0% | |
GATACAGTGCTTCATCAGGA+GGG | + | chr5.2:11893820-11893839 | MS.gene02465:CDS | 45.0% | |
GTCAATCTTCCACACTCTTC+GGG | - | chr5.2:11893654-11893673 | None:intergenic | 45.0% | |
TAGTTACACGCTGGAACTCT+TGG | - | chr5.2:11895250-11895269 | None:intergenic | 45.0% | |
TATACCTGTCTCAGCTGTTC+AGG | + | chr5.2:11895348-11895367 | MS.gene02465:CDS | 45.0% | |
TCAAGCATATCGCAAAGGCT+TGG | - | chr5.2:11895762-11895781 | None:intergenic | 45.0% | |
TGAATGTTCTCCGCACTAGA+GGG | + | chr5.2:11895296-11895315 | MS.gene02465:CDS | 45.0% | |
TTCGACAAAAAAGGGAAGGG+AGG | + | chr5.2:11894488-11894507 | MS.gene02465:intron | 45.0% | |
! | ATGGGATTGGTAATACGTCG+AGG | + | chr5.2:11893385-11893404 | MS.gene02465:CDS | 45.0% |
! | ATTGGTAATACGTCGAGGAG+AGG | + | chr5.2:11893390-11893409 | MS.gene02465:CDS | 45.0% |
! | GGTTGCCCTCCTTATCTTTT+TGG | - | chr5.2:11894951-11894970 | None:intergenic | 45.0% |
! | TCTAAAATCCGACAGCCTCT+AGG | - | chr5.2:11894585-11894604 | None:intergenic | 45.0% |
! | TGGAGGTTGGCTGTCATATA+TGG | - | chr5.2:11895164-11895183 | None:intergenic | 45.0% |
!! | CTCCTGATGAAGCACTGTAT+CGG | - | chr5.2:11893821-11893840 | None:intergenic | 45.0% |
!!! | GGATCTTTACCTTTTGGCTC+TGG | - | chr5.2:11895445-11895464 | None:intergenic | 45.0% |
ACAAAAAAGGGAAGGGAGGC+GGG | + | chr5.2:11894492-11894511 | MS.gene02465:intron | 50.0% | |
ATCGGTTGAGGTGTATCCAC+AGG | - | chr5.2:11894805-11894824 | None:intergenic | 50.0% | |
CAAGTAGGCATTCACAGCGT+CGG | + | chr5.2:11893418-11893437 | MS.gene02465:CDS | 50.0% | |
CACTGTATCGGAGAATCACG+AGG | - | chr5.2:11893809-11893828 | None:intergenic | 50.0% | |
CGATACAGTGCTTCATCAGG+AGG | + | chr5.2:11893819-11893838 | MS.gene02465:CDS | 50.0% | |
CGTTCCAGCAATGCGTATGT+TGG | + | chr5.2:11895013-11895032 | MS.gene02465:CDS | 50.0% | |
CTCCGATACAGTGCTTCATC+AGG | + | chr5.2:11893816-11893835 | MS.gene02465:CDS | 50.0% | |
CTGAATGTTCTCCGCACTAG+AGG | + | chr5.2:11895295-11895314 | MS.gene02465:CDS | 50.0% | |
CTGTCTCAGCTGTTCAGGAA+GGG | + | chr5.2:11895353-11895372 | MS.gene02465:CDS | 50.0% | |
GACAAAAAAGGGAAGGGAGG+CGG | + | chr5.2:11894491-11894510 | MS.gene02465:intron | 50.0% | |
GCATATCGCAAAGGCTTGGA+AGG | - | chr5.2:11895758-11895777 | None:intergenic | 50.0% | |
GCGGAGAACATTCAGCTCAT+AGG | - | chr5.2:11895290-11895309 | None:intergenic | 50.0% | |
GCTGCTCAAGCATATCGCAA+AGG | - | chr5.2:11895767-11895786 | None:intergenic | 50.0% | |
GGAAGGCAGAGAGTGGATAA+CGG | - | chr5.2:11895741-11895760 | None:intergenic | 50.0% | |
TAATACGTCGAGGAGAGGTG+TGG | + | chr5.2:11893395-11893414 | MS.gene02465:CDS | 50.0% | |
TATGACAGCCAACCTCCACA+CGG | + | chr5.2:11895166-11895185 | MS.gene02465:CDS | 50.0% | |
TGCAGCTGTTCATGCCATCT+GGG | - | chr5.2:11895556-11895575 | None:intergenic | 50.0% | |
TGTCTCAGCTGTTCAGGAAG+GGG | + | chr5.2:11895354-11895373 | MS.gene02465:CDS | 50.0% | |
TTCTCCTGCAGAGCAAGAGA+AGG | + | chr5.2:11895666-11895685 | MS.gene02465:CDS | 50.0% | |
TTGCAGCTGTTCATGCCATC+TGG | - | chr5.2:11895557-11895576 | None:intergenic | 50.0% | |
TTTCAAGGGCCGTGTTACAG+TGG | + | chr5.2:11895591-11895610 | MS.gene02465:CDS | 50.0% | |
AACCAAATAGCCGGTCCAGC+AGG | + | chr5.2:11895200-11895219 | MS.gene02465:CDS | 55.0% | |
AAGGCTTGGAAGGCAGAGAG+TGG | - | chr5.2:11895748-11895767 | None:intergenic | 55.0% | |
ATCGGAGAATCACGAGGACC+CGG | - | chr5.2:11893803-11893822 | None:intergenic | 55.0% | |
CCAAGGGCCATTTGAGTCTC+TGG | + | chr5.2:11895513-11895532 | MS.gene02465:CDS | 55.0% | |
CCAGAGACTCAAATGGCCCT+TGG | - | chr5.2:11895516-11895535 | None:intergenic | 55.0% | |
CCTGTCTCAGCTGTTCAGGA+AGG | + | chr5.2:11895352-11895371 | MS.gene02465:CDS | 55.0% | |
CCTTCCTGAACAGCTGAGAC+AGG | - | chr5.2:11895355-11895374 | None:intergenic | 55.0% | |
GAAACGACAACAGCACGTGC+AGG | - | chr5.2:11893576-11893595 | None:intergenic | 55.0% | |
GCCCATTGTCCCTGCTGAAT+AGG | - | chr5.2:11893489-11893508 | None:intergenic | 55.0% | |
GGCATGAACAGCTGCAATGC+TGG | + | chr5.2:11895560-11895579 | MS.gene02465:CDS | 55.0% | |
GGTTGTATTCCAGCTCCGTG+TGG | - | chr5.2:11895184-11895203 | None:intergenic | 55.0% | |
GTCTCAGCTGTTCAGGAAGG+GGG | + | chr5.2:11895355-11895374 | MS.gene02465:CDS | 55.0% | |
GTTCAGACTCCCGAAGAGTG+TGG | + | chr5.2:11893642-11893661 | MS.gene02465:CDS | 55.0% | |
TGTATTCCAGCTCCGTGTGG+AGG | - | chr5.2:11895181-11895200 | None:intergenic | 55.0% | |
TTCAACCCTCGCAGAGTTGC+CGG | + | chr5.2:11895483-11895502 | MS.gene02465:CDS | 55.0% | |
TTCTTCTCGGCCCTCTAGTG+CGG | - | chr5.2:11895309-11895328 | None:intergenic | 55.0% | |
!! | AAAGTGCCGGTTCACCCTAG+AGG | + | chr5.2:11894567-11894586 | MS.gene02465:intron | 55.0% |
!! | AATGGCCCTTGGCTCTGAAC+CGG | - | chr5.2:11895505-11895524 | None:intergenic | 55.0% |
!! | AGTTGCCGGTTCAGAGCCAA+GGG | + | chr5.2:11895497-11895516 | MS.gene02465:CDS | 55.0% |
CGGTTCACCCTAGAGGCTGT+CGG | + | chr5.2:11894574-11894593 | MS.gene02465:intron | 60.0% | |
CTCCTGCTGGACCGGCTATT+TGG | - | chr5.2:11895205-11895224 | None:intergenic | 60.0% | |
CTGAACCGGCAACTCTGCGA+GGG | - | chr5.2:11895491-11895510 | None:intergenic | 60.0% | |
GCGTCAGCACCAGAGCCAAA+AGG | + | chr5.2:11895433-11895452 | MS.gene02465:CDS | 60.0% | |
TCTGAACCGGCAACTCTGCG+AGG | - | chr5.2:11895492-11895511 | None:intergenic | 60.0% | |
TTCCAGCTCCGTGTGGAGGT+TGG | - | chr5.2:11895177-11895196 | None:intergenic | 60.0% | |
! | CGAGGAGAGGTGTGGCAAGT+AGG | + | chr5.2:11893403-11893422 | MS.gene02465:CDS | 60.0% |
!! | CGACAGCCTCTAGGGTGAAC+CGG | - | chr5.2:11894576-11894595 | None:intergenic | 60.0% |
!! | GAGTTGCCGGTTCAGAGCCA+AGG | + | chr5.2:11895496-11895515 | MS.gene02465:CDS | 60.0% |
AGCCAACCTCCACACGGAGC+TGG | + | chr5.2:11895172-11895191 | MS.gene02465:CDS | 65.0% | |
AGGGAAGGGAGGCGGGAGTA+TGG | + | chr5.2:11894499-11894518 | MS.gene02465:intron | 65.0% | |
! | GGGAAGGGAGGCGGGAGTAT+GGG | + | chr5.2:11894500-11894519 | MS.gene02465:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 11893378 | 11895813 | 11893378 | ID=MS.gene02465 |
chr5.2 | mRNA | 11893378 | 11895813 | 11893378 | ID=MS.gene02465.t1;Parent=MS.gene02465 |
chr5.2 | exon | 11893378 | 11893695 | 11893378 | ID=MS.gene02465.t1.exon1;Parent=MS.gene02465.t1 |
chr5.2 | CDS | 11893378 | 11893695 | 11893378 | ID=cds.MS.gene02465.t1;Parent=MS.gene02465.t1 |
chr5.2 | exon | 11893800 | 11893887 | 11893800 | ID=MS.gene02465.t1.exon2;Parent=MS.gene02465.t1 |
chr5.2 | CDS | 11893800 | 11893887 | 11893800 | ID=cds.MS.gene02465.t1;Parent=MS.gene02465.t1 |
chr5.2 | exon | 11894915 | 11895044 | 11894915 | ID=MS.gene02465.t1.exon3;Parent=MS.gene02465.t1 |
chr5.2 | CDS | 11894915 | 11895044 | 11894915 | ID=cds.MS.gene02465.t1;Parent=MS.gene02465.t1 |
chr5.2 | exon | 11895135 | 11895813 | 11895135 | ID=MS.gene02465.t1.exon4;Parent=MS.gene02465.t1 |
chr5.2 | CDS | 11895135 | 11895813 | 11895135 | ID=cds.MS.gene02465.t1;Parent=MS.gene02465.t1 |
Gene Sequence |
Protein sequence |