Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02475.t1 | XP_024628461.1 | 98.8 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 4.10E-238 | 833.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02475.t1 | Q6Z2G9 | 61.8 | 429 | 146 | 5 | 1 | 412 | 1 | 428 | 4.0e-141 | 502.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02475.t1 | A0A072TSP9 | 98.8 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 2.9e-238 | 833.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02475.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02475 | MS.gene24262 | PPI |
| MS.gene02475 | MS.gene90691 | PPI |
| MS.gene02475 | MS.gene27297 | PPI |
| MS.gene02475 | MS.gene26978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02475.t1 | MTR_8g077195 | 98.786 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 0.0 | 840 |
| MS.gene02475.t1 | MTR_5g020580 | 73.077 | 416 | 108 | 2 | 1 | 412 | 1 | 416 | 0.0 | 630 |
| MS.gene02475.t1 | MTR_8g077675 | 70.416 | 409 | 103 | 7 | 1 | 405 | 1 | 395 | 0.0 | 549 |
| MS.gene02475.t1 | MTR_8g077620 | 66.993 | 409 | 104 | 8 | 1 | 403 | 1 | 384 | 0.0 | 520 |
| MS.gene02475.t1 | MTR_1g022370 | 59.028 | 432 | 147 | 7 | 1 | 412 | 1 | 422 | 5.59e-174 | 493 |
| MS.gene02475.t1 | MTR_2g020280 | 57.453 | 369 | 148 | 3 | 46 | 412 | 32 | 393 | 1.74e-147 | 424 |
| MS.gene02475.t1 | MTR_2g007930 | 52.326 | 430 | 184 | 8 | 1 | 412 | 1 | 427 | 5.00e-146 | 422 |
| MS.gene02475.t1 | MTR_1g098790 | 51.025 | 439 | 180 | 11 | 1 | 412 | 1 | 431 | 3.62e-143 | 415 |
| MS.gene02475.t1 | MTR_1g088960 | 51.429 | 420 | 178 | 6 | 1 | 412 | 1 | 402 | 4.70e-142 | 410 |
| MS.gene02475.t1 | MTR_8g077650 | 57.732 | 388 | 92 | 10 | 37 | 409 | 3 | 333 | 1.35e-133 | 387 |
| MS.gene02475.t1 | MTR_2g076200 | 51.771 | 367 | 147 | 3 | 46 | 412 | 35 | 371 | 1.26e-126 | 370 |
| MS.gene02475.t1 | MTR_2g020280 | 58.140 | 301 | 117 | 3 | 114 | 412 | 1 | 294 | 3.40e-117 | 343 |
| MS.gene02475.t1 | MTR_2g076210 | 45.745 | 376 | 167 | 7 | 41 | 412 | 25 | 367 | 3.66e-99 | 300 |
| MS.gene02475.t1 | MTR_8g077640 | 65.919 | 223 | 50 | 4 | 1 | 205 | 46 | 260 | 5.20e-81 | 254 |
| MS.gene02475.t1 | MTR_8g077640 | 57.724 | 123 | 51 | 1 | 281 | 402 | 261 | 383 | 6.97e-37 | 138 |
| MS.gene02475.t1 | MTR_1g023800 | 61.224 | 147 | 54 | 2 | 1 | 146 | 1 | 145 | 8.43e-55 | 179 |
| MS.gene02475.t1 | MTR_0210s0010 | 52.475 | 101 | 41 | 2 | 96 | 196 | 9 | 102 | 2.62e-26 | 102 |
| MS.gene02475.t1 | MTR_0479s0040 | 57.143 | 70 | 24 | 1 | 112 | 181 | 12 | 75 | 1.57e-17 | 77.0 |
| MS.gene02475.t1 | MTR_2g105390 | 27.513 | 189 | 114 | 7 | 233 | 411 | 184 | 359 | 5.94e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02475.t1 | AT2G18280 | 62.740 | 416 | 128 | 9 | 1 | 412 | 1 | 393 | 9.34e-177 | 499 |
| MS.gene02475.t1 | AT2G18280 | 62.740 | 416 | 128 | 9 | 1 | 412 | 1 | 393 | 9.34e-177 | 499 |
| MS.gene02475.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 1 | 388 | 5.44e-149 | 428 |
| MS.gene02475.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 25 | 412 | 1.04e-148 | 428 |
| MS.gene02475.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 26 | 413 | 1.10e-148 | 428 |
| MS.gene02475.t1 | AT2G47900 | 53.365 | 416 | 181 | 6 | 1 | 412 | 1 | 407 | 1.14e-148 | 428 |
| MS.gene02475.t1 | AT2G47900 | 53.494 | 415 | 181 | 6 | 1 | 412 | 1 | 406 | 1.76e-148 | 427 |
| MS.gene02475.t1 | AT2G47900 | 53.494 | 415 | 181 | 6 | 1 | 412 | 1 | 406 | 1.76e-148 | 427 |
| MS.gene02475.t1 | AT1G25280 | 50.111 | 451 | 180 | 11 | 1 | 412 | 1 | 445 | 9.12e-142 | 412 |
| MS.gene02475.t1 | AT1G76900 | 48.690 | 458 | 186 | 8 | 1 | 412 | 1 | 455 | 3.95e-138 | 403 |
| MS.gene02475.t1 | AT1G76900 | 48.690 | 458 | 186 | 8 | 1 | 412 | 1 | 455 | 3.95e-138 | 403 |
| MS.gene02475.t1 | AT1G76900 | 48.690 | 458 | 186 | 8 | 1 | 412 | 1 | 455 | 3.95e-138 | 403 |
| MS.gene02475.t1 | AT1G43640 | 47.153 | 439 | 195 | 11 | 1 | 412 | 1 | 429 | 2.36e-129 | 379 |
| MS.gene02475.t1 | AT1G53320 | 51.791 | 363 | 145 | 4 | 53 | 412 | 44 | 379 | 2.43e-123 | 362 |
| MS.gene02475.t1 | AT3G06380 | 51.507 | 365 | 155 | 7 | 53 | 412 | 33 | 380 | 9.56e-123 | 361 |
| MS.gene02475.t1 | AT5G18680 | 50.541 | 370 | 162 | 7 | 49 | 412 | 35 | 389 | 2.09e-119 | 353 |
| MS.gene02475.t1 | AT1G43640 | 48.919 | 370 | 160 | 8 | 65 | 412 | 1 | 363 | 1.07e-116 | 345 |
| MS.gene02475.t1 | AT3G06380 | 51.163 | 301 | 126 | 6 | 116 | 412 | 5 | 288 | 3.76e-98 | 295 |
| MS.gene02475.t1 | AT5G18680 | 51.290 | 310 | 131 | 6 | 108 | 412 | 3 | 297 | 3.13e-97 | 293 |
| MS.gene02475.t1 | AT1G25280 | 52.222 | 270 | 97 | 7 | 172 | 412 | 1 | 267 | 5.72e-85 | 260 |
| MS.gene02475.t1 | AT1G25280 | 52.222 | 270 | 97 | 7 | 172 | 412 | 1 | 267 | 5.72e-85 | 260 |
| MS.gene02475.t1 | AT1G61940 | 54.023 | 87 | 40 | 0 | 56 | 142 | 1 | 87 | 5.77e-28 | 111 |
| MS.gene02475.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 56 | 116 | 1 | 61 | 2.58e-16 | 78.6 |
Find 116 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCCTTCTTATCTTTC+TGG | 0.112808 | 8.2:-28505271 | None:intergenic |
| ATTACCTGCTTCAATGAAAT+AGG | 0.231585 | 8.2:-28504830 | None:intergenic |
| ATGATGCAGTGCACTCTTCT+TGG | 0.233427 | 8.2:-28505645 | None:intergenic |
| TCTACCTCCTGAATTGCTTT+TGG | 0.284311 | 8.2:+28504664 | MS.gene02475:CDS |
| TGACCGACATAGCCAATTCT+TGG | 0.292823 | 8.2:-28504579 | None:intergenic |
| ATCTTACAGTTTGGAAAGAT+TGG | 0.295811 | 8.2:+28506011 | MS.gene02475:CDS |
| GAGGTAACGATGTTGGGGTT+GGG | 0.312924 | 8.2:-28505710 | None:intergenic |
| TATACCTATCTCAGCTATTC+AGG | 0.328559 | 8.2:+28505674 | MS.gene02475:CDS |
| ATCCGATCCAGTGCTTTATT+AGG | 0.329707 | 8.2:+28504962 | MS.gene02475:CDS |
| CTCTCATTCACAAGCAGGTT+TGG | 0.347646 | 8.2:-28506114 | None:intergenic |
| CTCGCACTTGGTCGACGATT+AGG | 0.349859 | 8.2:-28505528 | None:intergenic |
| TCCAATTGAACCTATTCAAC+AGG | 0.350379 | 8.2:+28504628 | MS.gene02475:CDS |
| ATATTTGAGGTAACGATGTT+GGG | 0.363096 | 8.2:-28505716 | None:intergenic |
| TTTACCAACATATTTGTTGC+TGG | 0.366133 | 8.2:-28505340 | None:intergenic |
| CCCTGTTGAATAGGTTCAAT+TGG | 0.369838 | 8.2:-28504629 | None:intergenic |
| GAAAGGGTAATCTTACAGTT+TGG | 0.371540 | 8.2:+28506002 | MS.gene02475:CDS |
| AGGTAACGATGTTGGGGTTG+GGG | 0.375686 | 8.2:-28505709 | None:intergenic |
| ATTATGTCCAAAAGCAATTC+AGG | 0.377900 | 8.2:-28504671 | None:intergenic |
| CCAGAGAGCATTTAGCTCAT+AGG | 0.381684 | 8.2:-28505613 | None:intergenic |
| CTTCGTGTTGTACTTAGGTT+TGG | 0.385998 | 8.2:+28505005 | MS.gene02475:CDS |
| CACCGACTTTGTCATATCCT+TGG | 0.386843 | 8.2:+28505296 | MS.gene02475:CDS |
| GTGTTGGTGCCTAAACTTCA+TGG | 0.395112 | 8.2:+28505896 | MS.gene02475:CDS |
| ATCGAGCCTTGGCTCGGTTC+TGG | 0.397446 | 8.2:-28505822 | None:intergenic |
| TGAGGTAACGATGTTGGGGT+TGG | 0.418830 | 8.2:-28505711 | None:intergenic |
| TAACACGACCCATGAAGTTT+AGG | 0.421461 | 8.2:-28505905 | None:intergenic |
| CCAGCATGTAACAATCTTGT+TGG | 0.440142 | 8.2:+28505582 | MS.gene02475:CDS |
| TTTCTTCCTCTGAGCAAGAA+AGG | 0.442479 | 8.2:+28505985 | MS.gene02475:CDS |
| GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8.2:+28504750 | MS.gene02475:CDS |
| ACCGACTTTGTCATATCCTT+GGG | 0.452958 | 8.2:+28505297 | MS.gene02475:CDS |
| CTAAATGCTCTCTGGACTAG+AGG | 0.452982 | 8.2:+28505621 | MS.gene02475:CDS |
| AAAACAACAACAGCACGAGC+AGG | 0.453602 | 8.2:-28504725 | None:intergenic |
| CCTTCCTGAATAGCTGAGAT+AGG | 0.455053 | 8.2:-28505678 | None:intergenic |
| TCAAGCAGATTGCAAAGGCT+TGG | 0.460094 | 8.2:-28506079 | None:intergenic |
| ATTTCCTATTTCATTGAAGC+AGG | 0.465510 | 8.2:+28504826 | MS.gene02475:CDS |
| GGGGTTCCGACACCAAGAAT+TGG | 0.468962 | 8.2:+28504567 | MS.gene02475:CDS |
| TCTACCTTCGTGTTGTACTT+AGG | 0.472018 | 8.2:+28505000 | MS.gene02475:CDS |
| AATATTTGAGGTAACGATGT+TGG | 0.472032 | 8.2:-28505717 | None:intergenic |
| AGCATTTAGCTCATAGGAAA+TGG | 0.472326 | 8.2:-28505607 | None:intergenic |
| GCCCACTGTCCCTGTTGAAT+AGG | 0.474061 | 8.2:-28504638 | None:intergenic |
| CCAGAGTACGAATCTGTCAT+TGG | 0.478687 | 8.2:-28505783 | None:intergenic |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8.2:+28504702 | MS.gene02475:CDS |
| GTTGTCATATATAGCAAACT+TGG | 0.484168 | 8.2:-28505478 | None:intergenic |
| CGATCCAGTGCTTTATTAGG+AGG | 0.490560 | 8.2:+28504965 | MS.gene02475:CDS |
| CCAAGGCTCGATGGACTCCT+TGG | 0.492424 | 8.2:+28505833 | MS.gene02475:CDS |
| CCTATGAGCTAAATGCTCTC+TGG | 0.493546 | 8.2:+28505613 | MS.gene02475:CDS |
| CACAGCTCTCATTCACAAGC+AGG | 0.495782 | 8.2:-28506119 | None:intergenic |
| GGTTCAATTGGAGTTACATC+CGG | 0.496479 | 8.2:-28504617 | None:intergenic |
| GTCAAAGTCACATGTTGCTC+CGG | 0.499201 | 8.2:+28504598 | MS.gene02475:CDS |
| AGTGCTGGTGAGGGAGGAAA+AGG | 0.500529 | 8.2:-28505747 | None:intergenic |
| TTGTTACATGCTGGAACTCT+TGG | 0.500747 | 8.2:-28505573 | None:intergenic |
| TCGGTTCTGGTAGCTCTGAT+AGG | 0.502232 | 8.2:-28505809 | None:intergenic |
| AAGCATAGTCCGCGAACTCA+AGG | 0.507358 | 8.2:+28504511 | MS.gene02475:CDS |
| AAAGGTACACTGAATATTTG+AGG | 0.519063 | 8.2:-28505729 | None:intergenic |
| TTCTTCCTCTGAGCAAGAAA+GGG | 0.522668 | 8.2:+28505986 | MS.gene02475:CDS |
| GATCGGATAATCACGAGGAC+CGG | 0.524270 | 8.2:-28504947 | None:intergenic |
| GCAGATTGCAAAGGCTTGGA+AGG | 0.525320 | 8.2:-28506075 | None:intergenic |
| AATAGGTAGCATATCAAAGC+GGG | 0.526116 | 8.2:+28504547 | MS.gene02475:CDS |
| CCTATCTCAGCTATTCAGGA+AGG | 0.539583 | 8.2:+28505678 | MS.gene02475:CDS |
| CCAAGGAGTCCATCGAGCCT+TGG | 0.540676 | 8.2:-28505833 | None:intergenic |
| TGTTCCTCCTAATAAAGCAC+TGG | 0.546307 | 8.2:-28504969 | None:intergenic |
| ATCGGATAATCACGAGGACC+GGG | 0.546623 | 8.2:-28504946 | None:intergenic |
| TGCGAGACTTAATTCTAAGC+AGG | 0.549219 | 8.2:+28505545 | MS.gene02475:CDS |
| TCTTTCAGTGCTGGTGAGGG+AGG | 0.551006 | 8.2:-28505753 | None:intergenic |
| CCAATGACAGATTCGTACTC+TGG | 0.552500 | 8.2:+28505783 | MS.gene02475:CDS |
| TAGCCGCCAGAAAGATAAGA+AGG | 0.555283 | 8.2:+28505265 | MS.gene02475:CDS |
| CCAACAAGATTGTTACATGC+TGG | 0.555601 | 8.2:-28505582 | None:intergenic |
| TGAAGTTTAGGCACCAACAC+TGG | 0.557707 | 8.2:-28505893 | None:intergenic |
| AGCATAGTCCGCGAACTCAA+GGG | 0.558850 | 8.2:+28504512 | MS.gene02475:CDS |
| CTTGATAATCTCTTTAGTAA+CGG | 0.564764 | 8.2:-28504777 | None:intergenic |
| CTATCTCAGCTATTCAGGAA+GGG | 0.566111 | 8.2:+28505679 | MS.gene02475:CDS |
| CGAGCCAGCAACAAATATGT+TGG | 0.568606 | 8.2:+28505336 | MS.gene02475:CDS |
| ACCTATTCAACAGGGACAGT+GGG | 0.571704 | 8.2:+28504637 | MS.gene02475:CDS |
| GAGTCCATCGAGCCTTGGCT+CGG | 0.572639 | 8.2:-28505828 | None:intergenic |
| TATCTCAGCTATTCAGGAAG+GGG | 0.574086 | 8.2:+28505680 | MS.gene02475:CDS |
| TGTTGGTGCCTAAACTTCAT+GGG | 0.575598 | 8.2:+28505897 | MS.gene02475:CDS |
| CTCCTAATAAAGCACTGGAT+CGG | 0.579253 | 8.2:-28504964 | None:intergenic |
| TGGAGCTGCTCATGCCACCT+AGG | 0.585203 | 8.2:-28505873 | None:intergenic |
| GGCATGAGCAGCTCCAGTGT+TGG | 0.585590 | 8.2:+28505880 | MS.gene02475:CDS |
| GGCCCTTCTTATCTTTCTGG+CGG | 0.587954 | 8.2:-28505268 | None:intergenic |
| TTAGAATTAAGTCTCGCACT+TGG | 0.589398 | 8.2:-28505540 | None:intergenic |
| GGTTGAACTGCAGCGTCATG+TGG | 0.590130 | 8.2:-28505507 | None:intergenic |
| AGAAAGATAAGAAGGGCCAC+AGG | 0.590973 | 8.2:+28505273 | MS.gene02475:CDS |
| GCTTGTCAAGCAGATTGCAA+AGG | 0.591302 | 8.2:-28506084 | None:intergenic |
| TAAATGCTCTCTGGACTAGA+GGG | 0.594786 | 8.2:+28505622 | MS.gene02475:CDS |
| CTGCAGCGTCATGTGGAGGT+TGG | 0.594900 | 8.2:-28505500 | None:intergenic |
| AGAACCGAGCCAAGGCTCGA+TGG | 0.600159 | 8.2:+28505824 | MS.gene02475:CDS |
| ACACCAAGAATTGGCTATGT+CGG | 0.600503 | 8.2:+28504576 | MS.gene02475:CDS |
| GCATAGTCCGCGAACTCAAG+GGG | 0.603504 | 8.2:+28504513 | MS.gene02475:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.610317 | 8.2:-28506065 | None:intergenic |
| GAGTGGGTAAGAGTAGTCCA+TGG | 0.613248 | 8.2:-28506048 | None:intergenic |
| ACAAATATGTTGGTAAACTG+AGG | 0.614123 | 8.2:+28505346 | MS.gene02475:CDS |
| TATGACAAAGTCGGTGCCTG+TGG | 0.616367 | 8.2:-28505289 | None:intergenic |
| AGACTCCTCAGCAATGCGGA+AGG | 0.618284 | 8.2:+28504798 | MS.gene02475:CDS |
| TATTTGAGGTAACGATGTTG+GGG | 0.620267 | 8.2:-28505715 | None:intergenic |
| GAGGAAGAAACATTATGAGA+CGG | 0.628123 | 8.2:-28505972 | None:intergenic |
| CTTCATGGGTCGTGTTACAG+TGG | 0.629354 | 8.2:+28505911 | MS.gene02475:CDS |
| ACATAGCCAATTCTTGGTGT+CGG | 0.630203 | 8.2:-28504573 | None:intergenic |
| AACCTATTCAACAGGGACAG+TGG | 0.631854 | 8.2:+28504636 | MS.gene02475:CDS |
| TCTCACTCTCTTCAACCCTA+CGG | 0.632526 | 8.2:-28504694 | None:intergenic |
| GTGATCCTTCCGCATTGCTG+AGG | 0.633651 | 8.2:-28504803 | None:intergenic |
| GAGCTACCAGAACCGAGCCA+AGG | 0.641949 | 8.2:+28505816 | MS.gene02475:CDS |
| TGGAAAAGATATATTCACCA+TGG | 0.647072 | 8.2:+28506031 | MS.gene02475:CDS |
| GCCCAAGGATATGACAAAGT+CGG | 0.650298 | 8.2:-28505298 | None:intergenic |
| AGGCTTGGAAGGCAGAGAGT+GGG | 0.650720 | 8.2:-28506064 | None:intergenic |
| GATTACCCTTTCTTGCTCAG+AGG | 0.652475 | 8.2:-28505991 | None:intergenic |
| CCAATTGAACCTATTCAACA+GGG | 0.658968 | 8.2:+28504629 | MS.gene02475:CDS |
| AGCCGCCAGAAAGATAAGAA+GGG | 0.660186 | 8.2:+28505266 | MS.gene02475:CDS |
| ATCTCAGCTATTCAGGAAGG+GGG | 0.669799 | 8.2:+28505681 | MS.gene02475:CDS |
| CACTGGATCGGATAATCACG+AGG | 0.678479 | 8.2:-28504952 | None:intergenic |
| TGAACTGCAGCGTCATGTGG+AGG | 0.688082 | 8.2:-28505504 | None:intergenic |
| ATGTCCAAAAGCAATTCAGG+AGG | 0.691534 | 8.2:-28504668 | None:intergenic |
| ATCAAGACTCCTCAGCAATG+CGG | 0.693306 | 8.2:+28504794 | MS.gene02475:CDS |
| CTTCGGTATGTAAATCATGG+AGG | 0.716243 | 8.2:+28504753 | MS.gene02475:CDS |
| GAATAGGTAGCATATCAAAG+CGG | 0.721866 | 8.2:+28504546 | MS.gene02475:CDS |
| ATAGGTAGCATATCAAAGCG+GGG | 0.729686 | 8.2:+28504548 | MS.gene02475:CDS |
| CAAACCTAAGTACAACACGA+AGG | 0.754352 | 8.2:-28505004 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGGATTATACTAAAAA+GGG | - | chr8.2:28504867-28504886 | None:intergenic | 15.0% |
| !! | ATACAAAATAGAAAAAATGT+CGG | - | chr8.2:28505164-28505183 | None:intergenic | 15.0% |
| !! | TAATTTGGATTATACTAAAA+AGG | - | chr8.2:28504868-28504887 | None:intergenic | 15.0% |
| !! | AGTATAATCCAAATTATTCT+TGG | + | chr8.2:28504872-28504891 | MS.gene02475:intron | 20.0% |
| !! | ATTTGGATTATACTAAAAAG+GGG | - | chr8.2:28504866-28504885 | None:intergenic | 20.0% |
| !!! | CAACATGTTTTTTATACATT+TGG | + | chr8.2:28505435-28505454 | MS.gene02475:intron | 20.0% |
| ! | AAAAACATGTTGAGATTACA+AGG | - | chr8.2:28505427-28505446 | None:intergenic | 25.0% |
| ! | AAAACATGTTGAGATTACAA+GGG | - | chr8.2:28505426-28505445 | None:intergenic | 25.0% |
| ! | AATAAAAAAGCTCATGAACT+TGG | - | chr8.2:28505104-28505123 | None:intergenic | 25.0% |
| ! | AGGATTAAAAGCTGATATAA+GGG | - | chr8.2:28505401-28505420 | None:intergenic | 25.0% |
| ! | CTTAAAGATGATAACTTACA+TGG | - | chr8.2:28505033-28505052 | None:intergenic | 25.0% |
| ! | TAGGATTAAAAGCTGATATA+AGG | - | chr8.2:28505402-28505421 | None:intergenic | 25.0% |
| !! | ATAAGAAGCATAAAAACCTA+AGG | - | chr8.2:28504899-28504918 | None:intergenic | 25.0% |
| !! | CTTGATAATCTCTTTAGTAA+CGG | - | chr8.2:28504780-28504799 | None:intergenic | 25.0% |
| !! | TAAGAAGCATAAAAACCTAA+GGG | - | chr8.2:28504898-28504917 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATACATTTGGC+AGG | + | chr8.2:28505439-28505458 | MS.gene02475:intron | 25.0% |
| AAACATGTTGAGATTACAAG+GGG | - | chr8.2:28505425-28505444 | None:intergenic | 30.0% | |
| ATCTTACAGTTTGGAAAGAT+TGG | + | chr8.2:28506011-28506030 | MS.gene02475:CDS | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | - | chr8.2:28504833-28504852 | None:intergenic | 30.0% | |
| ATTATGTCCAAAAGCAATTC+AGG | - | chr8.2:28504674-28504693 | None:intergenic | 30.0% | |
| ATTTATTGCGATTTAGACTG+TGG | + | chr8.2:28505125-28505144 | MS.gene02475:intron | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | + | chr8.2:28504826-28504845 | MS.gene02475:CDS | 30.0% | |
| GAAATTCAACATTCATAGTC+AGG | - | chr8.2:28505073-28505092 | None:intergenic | 30.0% | |
| GTTGTCATATATAGCAAACT+TGG | - | chr8.2:28505481-28505500 | None:intergenic | 30.0% | |
| TACTTAAAAACAAGTCTCCT+AGG | + | chr8.2:28505856-28505875 | MS.gene02475:CDS | 30.0% | |
| TGGAAAAGATATATTCACCA+TGG | + | chr8.2:28506031-28506050 | MS.gene02475:CDS | 30.0% | |
| ! | AAAGGTACACTGAATATTTG+AGG | - | chr8.2:28505732-28505751 | None:intergenic | 30.0% |
| ! | AATATTTGAGGTAACGATGT+TGG | - | chr8.2:28505720-28505739 | None:intergenic | 30.0% |
| ! | ACAAATATGTTGGTAAACTG+AGG | + | chr8.2:28505346-28505365 | MS.gene02475:CDS | 30.0% |
| ! | ATATTTGAGGTAACGATGTT+GGG | - | chr8.2:28505719-28505738 | None:intergenic | 30.0% |
| ! | ATTTGGCAGGTCTAATTTTT+GGG | + | chr8.2:28505452-28505471 | MS.gene02475:intron | 30.0% |
| ! | TTTACCAACATATTTGTTGC+TGG | - | chr8.2:28505343-28505362 | None:intergenic | 30.0% |
| !! | GCATTTAAGTGATCTTGTTT+TGG | + | chr8.2:28505196-28505215 | MS.gene02475:intron | 30.0% |
| !!! | AGACTTGTTTTTAAGTACCA+AGG | - | chr8.2:28505853-28505872 | None:intergenic | 30.0% |
| !!! | TGTTGTTGTTTTTTGTGCTT+CGG | + | chr8.2:28504736-28504755 | MS.gene02475:CDS | 30.0% |
| !!! | TTGTTTTGGTTTTGTCGTAA+CGG | + | chr8.2:28505210-28505229 | MS.gene02475:intron | 30.0% |
| AAGGGGATGAAAAATGGAAT+AGG | + | chr8.2:28504530-28504549 | MS.gene02475:CDS | 35.0% | |
| AATAGGTAGCATATCAAAGC+GGG | + | chr8.2:28504547-28504566 | MS.gene02475:CDS | 35.0% | |
| CCAATTGAACCTATTCAACA+GGG | + | chr8.2:28504629-28504648 | MS.gene02475:CDS | 35.0% | |
| GAAAGGGTAATCTTACAGTT+TGG | + | chr8.2:28506002-28506021 | MS.gene02475:CDS | 35.0% | |
| GAATAGGTAGCATATCAAAG+CGG | + | chr8.2:28504546-28504565 | MS.gene02475:CDS | 35.0% | |
| GAGGAAGAAACATTATGAGA+CGG | - | chr8.2:28505975-28505994 | None:intergenic | 35.0% | |
| TATACCTATCTCAGCTATTC+AGG | + | chr8.2:28505674-28505693 | MS.gene02475:CDS | 35.0% | |
| TCCAATTGAACCTATTCAAC+AGG | + | chr8.2:28504628-28504647 | MS.gene02475:CDS | 35.0% | |
| TTAAAAACAAGTCTCCTAGG+TGG | + | chr8.2:28505859-28505878 | MS.gene02475:CDS | 35.0% | |
| TTAGAATTAAGTCTCGCACT+TGG | - | chr8.2:28505543-28505562 | None:intergenic | 35.0% | |
| ! | AGCATTTAGCTCATAGGAAA+TGG | - | chr8.2:28505610-28505629 | None:intergenic | 35.0% |
| ! | CATTTGGCAGGTCTAATTTT+TGG | + | chr8.2:28505451-28505470 | MS.gene02475:intron | 35.0% |
| ! | TATTTGAGGTAACGATGTTG+GGG | - | chr8.2:28505718-28505737 | None:intergenic | 35.0% |
| ! | TTTGGCAGGTCTAATTTTTG+GGG | + | chr8.2:28505453-28505472 | MS.gene02475:intron | 35.0% |
| ACACCAAGAATTGGCTATGT+CGG | + | chr8.2:28504576-28504595 | MS.gene02475:CDS | 40.0% | |
| ATAGGTAGCATATCAAAGCG+GGG | + | chr8.2:28504548-28504567 | MS.gene02475:CDS | 40.0% | |
| ATGTCCAAAAGCAATTCAGG+AGG | - | chr8.2:28504671-28504690 | None:intergenic | 40.0% | |
| ATGTTGAGATTACAAGGGGT+AGG | - | chr8.2:28505421-28505440 | None:intergenic | 40.0% | |
| CAAACCTAAGTACAACACGA+AGG | - | chr8.2:28505007-28505026 | None:intergenic | 40.0% | |
| CCAAATTATTCTTGGCCCTT+AGG | + | chr8.2:28504880-28504899 | MS.gene02475:intron | 40.0% | |
| CCAACAAGATTGTTACATGC+TGG | - | chr8.2:28505585-28505604 | None:intergenic | 40.0% | |
| CCAGCATGTAACAATCTTGT+TGG | + | chr8.2:28505582-28505601 | MS.gene02475:CDS | 40.0% | |
| CCCTGTTGAATAGGTTCAAT+TGG | - | chr8.2:28504632-28504651 | None:intergenic | 40.0% | |
| CCTAAGGGCCAAGAATAATT+TGG | - | chr8.2:28504883-28504902 | None:intergenic | 40.0% | |
| CCTTATGTGTATGAATAGCC+CGG | + | chr8.2:28504928-28504947 | MS.gene02475:intron | 40.0% | |
| CTATCTCAGCTATTCAGGAA+GGG | + | chr8.2:28505679-28505698 | MS.gene02475:CDS | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | chr8.2:28504753-28504772 | MS.gene02475:CDS | 40.0% | |
| CTTCGTGTTGTACTTAGGTT+TGG | + | chr8.2:28505005-28505024 | MS.gene02475:CDS | 40.0% | |
| GAACTCAAGGGGATGAAAAA+TGG | + | chr8.2:28504524-28504543 | MS.gene02475:CDS | 40.0% | |
| GGTTCAATTGGAGTTACATC+CGG | - | chr8.2:28504620-28504639 | None:intergenic | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | + | chr8.2:28504750-28504769 | MS.gene02475:CDS | 40.0% | |
| TAACACGACCCATGAAGTTT+AGG | - | chr8.2:28505908-28505927 | None:intergenic | 40.0% | |
| TATCTCAGCTATTCAGGAAG+GGG | + | chr8.2:28505680-28505699 | MS.gene02475:CDS | 40.0% | |
| TCTACCTTCGTGTTGTACTT+AGG | + | chr8.2:28505000-28505019 | MS.gene02475:CDS | 40.0% | |
| TGCGAGACTTAATTCTAAGC+AGG | + | chr8.2:28505545-28505564 | MS.gene02475:CDS | 40.0% | |
| TGTTCCTCCTAATAAAGCAC+TGG | - | chr8.2:28504972-28504991 | None:intergenic | 40.0% | |
| TTCTTCCTCTGAGCAAGAAA+GGG | + | chr8.2:28505986-28506005 | MS.gene02475:CDS | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | + | chr8.2:28504702-28504721 | MS.gene02475:CDS | 40.0% | |
| TTGTTACATGCTGGAACTCT+TGG | - | chr8.2:28505576-28505595 | None:intergenic | 40.0% | |
| TTTCTTCCTCTGAGCAAGAA+AGG | + | chr8.2:28505985-28506004 | MS.gene02475:CDS | 40.0% | |
| ! | ACATAGCCAATTCTTGGTGT+CGG | - | chr8.2:28504576-28504595 | None:intergenic | 40.0% |
| ! | ACCGACTTTGTCATATCCTT+GGG | + | chr8.2:28505297-28505316 | MS.gene02475:CDS | 40.0% |
| ! | ATCCGATCCAGTGCTTTATT+AGG | + | chr8.2:28504962-28504981 | MS.gene02475:CDS | 40.0% |
| ! | GCTTTTGGACATAATCCGTA+GGG | + | chr8.2:28504679-28504698 | MS.gene02475:CDS | 40.0% |
| ! | GTTTTGTCGTAACGGTATAG+CGG | + | chr8.2:28505218-28505237 | MS.gene02475:intron | 40.0% |
| ! | TAAATGCTCTCTGGACTAGA+GGG | + | chr8.2:28505622-28505641 | MS.gene02475:CDS | 40.0% |
| ! | TCTACCTCCTGAATTGCTTT+TGG | + | chr8.2:28504664-28504683 | MS.gene02475:CDS | 40.0% |
| ! | TGCTTTTGGACATAATCCGT+AGG | + | chr8.2:28504678-28504697 | MS.gene02475:CDS | 40.0% |
| ! | TGGTAAACTGAGGCAAGTTT+TGG | + | chr8.2:28505356-28505375 | MS.gene02475:intron | 40.0% |
| ! | TGTTGGTGCCTAAACTTCAT+GGG | + | chr8.2:28505897-28505916 | MS.gene02475:CDS | 40.0% |
| !! | CTCCTAATAAAGCACTGGAT+CGG | - | chr8.2:28504967-28504986 | None:intergenic | 40.0% |
| !!! | GGACTTTTTTCTTTCAGTGC+TGG | - | chr8.2:28505765-28505784 | None:intergenic | 40.0% |
| !!! | TTTTCTTTCAGTGCTGGTGA+GGG | - | chr8.2:28505759-28505778 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTCAGTGCTGGTG+AGG | - | chr8.2:28505760-28505779 | None:intergenic | 40.0% |
| AAAACAACAACAGCACGAGC+AGG | - | chr8.2:28504728-28504747 | None:intergenic | 45.0% | |
| AACCTATTCAACAGGGACAG+TGG | + | chr8.2:28504636-28504655 | MS.gene02475:CDS | 45.0% | |
| ACCTATTCAACAGGGACAGT+GGG | + | chr8.2:28504637-28504656 | MS.gene02475:CDS | 45.0% | |
| AGAAAAATCGTCTGTGCCCA+AGG | - | chr8.2:28505316-28505335 | None:intergenic | 45.0% | |
| AGAAAGATAAGAAGGGCCAC+AGG | + | chr8.2:28505273-28505292 | MS.gene02475:CDS | 45.0% | |
| AGCCGCCAGAAAGATAAGAA+GGG | + | chr8.2:28505266-28505285 | MS.gene02475:CDS | 45.0% | |
| ATCAAGACTCCTCAGCAATG+CGG | + | chr8.2:28504794-28504813 | MS.gene02475:CDS | 45.0% | |
| ATCTCAGCTATTCAGGAAGG+GGG | + | chr8.2:28505681-28505700 | MS.gene02475:CDS | 45.0% | |
| ATGATGCAGTGCACTCTTCT+TGG | - | chr8.2:28505648-28505667 | None:intergenic | 45.0% | |
| CCAATGACAGATTCGTACTC+TGG | + | chr8.2:28505783-28505802 | MS.gene02475:CDS | 45.0% | |
| CCAGAGTACGAATCTGTCAT+TGG | - | chr8.2:28505786-28505805 | None:intergenic | 45.0% | |
| CCGGGCTATTCATACACATA+AGG | - | chr8.2:28504931-28504950 | None:intergenic | 45.0% | |
| CCTATCTCAGCTATTCAGGA+AGG | + | chr8.2:28505678-28505697 | MS.gene02475:CDS | 45.0% | |
| CCTATGAGCTAAATGCTCTC+TGG | + | chr8.2:28505613-28505632 | MS.gene02475:CDS | 45.0% | |
| CCTTCCTGAATAGCTGAGAT+AGG | - | chr8.2:28505681-28505700 | None:intergenic | 45.0% | |
| CGAGCCAGCAACAAATATGT+TGG | + | chr8.2:28505336-28505355 | MS.gene02475:CDS | 45.0% | |
| GATTACCCTTTCTTGCTCAG+AGG | - | chr8.2:28505994-28506013 | None:intergenic | 45.0% | |
| GCCCAAGGATATGACAAAGT+CGG | - | chr8.2:28505301-28505320 | None:intergenic | 45.0% | |
| GCTTGTCAAGCAGATTGCAA+AGG | - | chr8.2:28506087-28506106 | None:intergenic | 45.0% | |
| GTCAAAGTCACATGTTGCTC+CGG | + | chr8.2:28504598-28504617 | MS.gene02475:CDS | 45.0% | |
| TAGCCGCCAGAAAGATAAGA+AGG | + | chr8.2:28505265-28505284 | MS.gene02475:CDS | 45.0% | |
| TCAAGCAGATTGCAAAGGCT+TGG | - | chr8.2:28506082-28506101 | None:intergenic | 45.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | - | chr8.2:28504697-28504716 | None:intergenic | 45.0% | |
| TGAAGTTTAGGCACCAACAC+TGG | - | chr8.2:28505896-28505915 | None:intergenic | 45.0% | |
| TGACCGACATAGCCAATTCT+TGG | - | chr8.2:28504582-28504601 | None:intergenic | 45.0% | |
| TGTGGCCCTTCTTATCTTTC+TGG | - | chr8.2:28505274-28505293 | None:intergenic | 45.0% | |
| ! | CGATCCAGTGCTTTATTAGG+AGG | + | chr8.2:28504965-28504984 | MS.gene02475:CDS | 45.0% |
| ! | CTAAATGCTCTCTGGACTAG+AGG | + | chr8.2:28505621-28505640 | MS.gene02475:CDS | 45.0% |
| ! | GTGTTGGTGCCTAAACTTCA+TGG | + | chr8.2:28505896-28505915 | MS.gene02475:CDS | 45.0% |
| ! | TTTTCATCCCCTTGAGTTCG+CGG | - | chr8.2:28504523-28504542 | None:intergenic | 45.0% |
| !! | CACCGACTTTGTCATATCCT+TGG | + | chr8.2:28505296-28505315 | MS.gene02475:CDS | 45.0% |
| !! | CCAGAGAGCATTTAGCTCAT+AGG | - | chr8.2:28505616-28505635 | None:intergenic | 45.0% |
| AAGCATAGTCCGCGAACTCA+AGG | + | chr8.2:28504511-28504530 | MS.gene02475:CDS | 50.0% | |
| AGCATAGTCCGCGAACTCAA+GGG | + | chr8.2:28504512-28504531 | MS.gene02475:CDS | 50.0% | |
| AGGTAACGATGTTGGGGTTG+GGG | - | chr8.2:28505712-28505731 | None:intergenic | 50.0% | |
| ATCGGATAATCACGAGGACC+GGG | - | chr8.2:28504949-28504968 | None:intergenic | 50.0% | |
| CACTGGATCGGATAATCACG+AGG | - | chr8.2:28504955-28504974 | None:intergenic | 50.0% | |
| CTTCATGGGTCGTGTTACAG+TGG | + | chr8.2:28505911-28505930 | MS.gene02475:CDS | 50.0% | |
| GAGGTAACGATGTTGGGGTT+GGG | - | chr8.2:28505713-28505732 | None:intergenic | 50.0% | |
| GAGTGGGTAAGAGTAGTCCA+TGG | - | chr8.2:28506051-28506070 | None:intergenic | 50.0% | |
| GATCGGATAATCACGAGGAC+CGG | - | chr8.2:28504950-28504969 | None:intergenic | 50.0% | |
| GCAGATTGCAAAGGCTTGGA+AGG | - | chr8.2:28506078-28506097 | None:intergenic | 50.0% | |
| GGCCCTTCTTATCTTTCTGG+CGG | - | chr8.2:28505271-28505290 | None:intergenic | 50.0% | |
| TGAGGTAACGATGTTGGGGT+TGG | - | chr8.2:28505714-28505733 | None:intergenic | 50.0% | |
| ! | TATGACAAAGTCGGTGCCTG+TGG | - | chr8.2:28505292-28505311 | None:intergenic | 50.0% |
| !! | TCGGTTCTGGTAGCTCTGAT+AGG | - | chr8.2:28505812-28505831 | None:intergenic | 50.0% |
| AAGGCTTGGAAGGCAGAGAG+TGG | - | chr8.2:28506068-28506087 | None:intergenic | 55.0% | |
| AGACTCCTCAGCAATGCGGA+AGG | + | chr8.2:28504798-28504817 | MS.gene02475:CDS | 55.0% | |
| AGGCTTGGAAGGCAGAGAGT+GGG | - | chr8.2:28506067-28506086 | None:intergenic | 55.0% | |
| CTCGCACTTGGTCGACGATT+AGG | - | chr8.2:28505531-28505550 | None:intergenic | 55.0% | |
| GCATAGTCCGCGAACTCAAG+GGG | + | chr8.2:28504513-28504532 | MS.gene02475:CDS | 55.0% | |
| GCCCACTGTCCCTGTTGAAT+AGG | - | chr8.2:28504641-28504660 | None:intergenic | 55.0% | |
| GGGGTTCCGACACCAAGAAT+TGG | + | chr8.2:28504567-28504586 | MS.gene02475:CDS | 55.0% | |
| GGTTGAACTGCAGCGTCATG+TGG | - | chr8.2:28505510-28505529 | None:intergenic | 55.0% | |
| GTGATCCTTCCGCATTGCTG+AGG | - | chr8.2:28504806-28504825 | None:intergenic | 55.0% | |
| TGAACTGCAGCGTCATGTGG+AGG | - | chr8.2:28505507-28505526 | None:intergenic | 55.0% | |
| !! | AGTGCTGGTGAGGGAGGAAA+AGG | - | chr8.2:28505750-28505769 | None:intergenic | 55.0% |
| !! | TCTTTCAGTGCTGGTGAGGG+AGG | - | chr8.2:28505756-28505775 | None:intergenic | 55.0% |
| AGAACCGAGCCAAGGCTCGA+TGG | + | chr8.2:28505824-28505843 | MS.gene02475:CDS | 60.0% | |
| CCAAGGAGTCCATCGAGCCT+TGG | - | chr8.2:28505836-28505855 | None:intergenic | 60.0% | |
| CTGCAGCGTCATGTGGAGGT+TGG | - | chr8.2:28505503-28505522 | None:intergenic | 60.0% | |
| GAGCTACCAGAACCGAGCCA+AGG | + | chr8.2:28505816-28505835 | MS.gene02475:CDS | 60.0% | |
| GAGTCCATCGAGCCTTGGCT+CGG | - | chr8.2:28505831-28505850 | None:intergenic | 60.0% | |
| GGCATGAGCAGCTCCAGTGT+TGG | + | chr8.2:28505880-28505899 | MS.gene02475:CDS | 60.0% | |
| TGGAGCTGCTCATGCCACCT+AGG | - | chr8.2:28505876-28505895 | None:intergenic | 60.0% | |
| ! | CCAAGGCTCGATGGACTCCT+TGG | + | chr8.2:28505833-28505852 | MS.gene02475:CDS | 60.0% |
| !! | ATCGAGCCTTGGCTCGGTTC+TGG | - | chr8.2:28505825-28505844 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 28504500 | 28506133 | 28504500 | ID=MS.gene02475 |
| chr8.2 | mRNA | 28504500 | 28506133 | 28504500 | ID=MS.gene02475.t1;Parent=MS.gene02475 |
| chr8.2 | exon | 28504500 | 28504847 | 28504500 | ID=MS.gene02475.t1.exon1;Parent=MS.gene02475.t1 |
| chr8.2 | CDS | 28504500 | 28504847 | 28504500 | ID=cds.MS.gene02475.t1;Parent=MS.gene02475.t1 |
| chr8.2 | exon | 28504946 | 28505033 | 28504946 | ID=MS.gene02475.t1.exon2;Parent=MS.gene02475.t1 |
| chr8.2 | CDS | 28504946 | 28505033 | 28504946 | ID=cds.MS.gene02475.t1;Parent=MS.gene02475.t1 |
| chr8.2 | exon | 28505238 | 28505367 | 28505238 | ID=MS.gene02475.t1.exon3;Parent=MS.gene02475.t1 |
| chr8.2 | CDS | 28505238 | 28505367 | 28505238 | ID=cds.MS.gene02475.t1;Parent=MS.gene02475.t1 |
| chr8.2 | exon | 28505461 | 28506133 | 28505461 | ID=MS.gene02475.t1.exon4;Parent=MS.gene02475.t1 |
| chr8.2 | CDS | 28505461 | 28506133 | 28505461 | ID=cds.MS.gene02475.t1;Parent=MS.gene02475.t1 |
| Gene Sequence |
| Protein sequence |
