Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024875.t1 | XP_003610719.1 | 91.2 | 274 | 19 | 3 | 1 | 272 | 1 | 271 | 3.20E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024875.t1 | B2A4J5 | 40.4 | 198 | 101 | 6 | 13 | 203 | 2 | 189 | 1.1e-30 | 135.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024875.t1 | G7K2E3 | 91.2 | 274 | 19 | 3 | 1 | 272 | 1 | 271 | 2.3e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024875 | MS.gene057003 | PPI |
| MS.gene024875 | MS.gene85230 | PPI |
| MS.gene024875 | MS.gene051956 | PPI |
| MS.gene024875 | MS.gene76157 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024875.t1 | MTR_5g006290 | 91.241 | 274 | 19 | 3 | 1 | 272 | 1 | 271 | 0.0 | 513 |
| MS.gene024875.t1 | MTR_5g006290 | 90.945 | 254 | 18 | 3 | 1 | 252 | 1 | 251 | 6.94e-171 | 473 |
| MS.gene024875.t1 | MTR_1g104500 | 71.168 | 274 | 73 | 4 | 1 | 272 | 1 | 270 | 5.65e-146 | 411 |
| MS.gene024875.t1 | MTR_5g006300 | 79.920 | 249 | 36 | 3 | 12 | 252 | 8 | 250 | 4.70e-145 | 408 |
| MS.gene024875.t1 | MTR_2g099720 | 36.149 | 296 | 149 | 6 | 14 | 272 | 53 | 345 | 5.14e-61 | 197 |
| MS.gene024875.t1 | MTR_1g104513 | 56.061 | 66 | 26 | 2 | 209 | 272 | 1 | 65 | 2.78e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024875.t1 | AT4G14930 | 58.271 | 266 | 101 | 5 | 14 | 272 | 16 | 278 | 7.52e-109 | 317 |
| MS.gene024875.t1 | AT4G14930 | 58.271 | 266 | 101 | 5 | 14 | 272 | 16 | 278 | 1.53e-108 | 317 |
| MS.gene024875.t1 | AT1G72880 | 47.549 | 204 | 99 | 3 | 14 | 216 | 63 | 259 | 2.35e-59 | 193 |
| MS.gene024875.t1 | AT1G72880 | 47.549 | 204 | 99 | 3 | 14 | 216 | 63 | 259 | 2.35e-59 | 193 |
Find 63 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTCCTTCGCTGTTTC+TGG | 0.110041 | 5.4:-2119302 | MS.gene024875:CDS |
| TCGTACTGAGTGGCATAAAT+AGG | 0.244132 | 5.4:-2119217 | MS.gene024875:CDS |
| CGTACTGAGTGGCATAAATA+GGG | 0.336503 | 5.4:-2119216 | MS.gene024875:CDS |
| CGCTCCTGGCTTAAGAGCTT+TGG | 0.339950 | 5.4:-2119456 | MS.gene024875:CDS |
| ACTGCTGATTTCTCAGTATC+AGG | 0.346261 | 5.4:+2119386 | None:intergenic |
| GCCAAACAAGTTCATATTCA+TGG | 0.356932 | 5.4:-2119329 | MS.gene024875:CDS |
| CCCGCTGATTGCACTTCTCT+TGG | 0.364382 | 5.4:-2119275 | MS.gene024875:CDS |
| CTCGCAAATAAAAGATGTTC+AGG | 0.372141 | 5.4:+2116885 | None:intergenic |
| ACCAGTACTGAGTTTATGAT+TGG | 0.387156 | 5.4:+2118328 | None:intergenic |
| TCCATGAATATGAACTTGTT+TGG | 0.390536 | 5.4:+2119328 | None:intergenic |
| TCATATGAAATGGAGATAGA+AGG | 0.392459 | 5.4:+2118646 | None:intergenic |
| AACATACCAGTCATATGAAA+TGG | 0.413011 | 5.4:+2118636 | None:intergenic |
| TGAACTTGTTTGGCAGCTAT+AGG | 0.420107 | 5.4:+2119338 | None:intergenic |
| TATTCTATGTCCAGGGTTGA+AGG | 0.439800 | 5.4:-2118397 | MS.gene024875:intron |
| TGTAGTAGGAAAGAGTGATT+TGG | 0.440018 | 5.4:+2119247 | None:intergenic |
| GGGTTACAAGCTAACGAGGC+AGG | 0.444468 | 5.4:-2117027 | MS.gene024875:CDS |
| CTATCTCCATTTCATATGAC+TGG | 0.452640 | 5.4:-2118642 | MS.gene024875:intron |
| TACCTTATGGTTAGCAACAT+TGG | 0.464242 | 5.4:+2118249 | None:intergenic |
| GTTTACTCAGGCACTGTAGC+TGG | 0.466587 | 5.4:-2118697 | MS.gene024875:CDS |
| AGTAACAAAATCGATGGAAG+AGG | 0.475243 | 5.4:-2119537 | None:intergenic |
| GGGTAAAAGTATCTTTAAGA+TGG | 0.475283 | 5.4:-2117006 | MS.gene024875:CDS |
| AACCAATGTTGCTAACCATA+AGG | 0.509023 | 5.4:-2118251 | MS.gene024875:intron |
| AGTACGAGATCGGGTGTAGT+AGG | 0.510543 | 5.4:+2119233 | None:intergenic |
| ATGCCACTCAGTACGAGATC+GGG | 0.512957 | 5.4:+2119224 | None:intergenic |
| GACGATGGAATCGACGCTCC+TGG | 0.513493 | 5.4:-2119470 | MS.gene024875:CDS |
| TCCAATCATAAACTCAGTAC+TGG | 0.516828 | 5.4:-2118329 | MS.gene024875:CDS |
| TTATGGTTAGCAACATTGGT+TGG | 0.519228 | 5.4:+2118253 | None:intergenic |
| AAAGTATCTTTAAGATGGGA+TGG | 0.524804 | 5.4:-2117001 | MS.gene024875:CDS |
| TACAGATCACAAATCTTTGA+AGG | 0.525967 | 5.4:-2116055 | MS.gene024875:CDS |
| TTCCCTTTCAGTGTTTACTC+AGG | 0.528508 | 5.4:-2118709 | MS.gene024875:intron |
| TATGCCACTCAGTACGAGAT+CGG | 0.530893 | 5.4:+2119223 | None:intergenic |
| GGTAAAAGTATCTTTAAGAT+GGG | 0.542844 | 5.4:-2117005 | MS.gene024875:CDS |
| CACTGTAGCTGGAGCTCGAG+AGG | 0.542909 | 5.4:-2118686 | MS.gene024875:CDS |
| AGAAGGGATATTGTTGAAGA+AGG | 0.544062 | 5.4:+2118663 | None:intergenic |
| GACACCAAAGCTCTTAAGCC+AGG | 0.545144 | 5.4:+2119452 | None:intergenic |
| TCCAAGAGAAGTGCAATCAG+CGG | 0.552211 | 5.4:+2119274 | None:intergenic |
| CATATGAAATGGAGATAGAA+GGG | 0.554398 | 5.4:+2118647 | None:intergenic |
| CCAAGAGAAGTGCAATCAGC+GGG | 0.556534 | 5.4:+2119275 | None:intergenic |
| AGAAACAGCGAAGGAAGAAA+CGG | 0.565756 | 5.4:+2119304 | None:intergenic |
| GATCACAAATCTTTGAAGGC+GGG | 0.566869 | 5.4:-2116051 | MS.gene024875:CDS |
| AATGCAAACTTGTGCAGCAA+GGG | 0.572061 | 5.4:+2118351 | None:intergenic |
| ATAAAGAAACAAAGCTACCC+TGG | 0.585747 | 5.4:-2118301 | MS.gene024875:CDS |
| AACATTAACAATAAGAGAGG+AGG | 0.591884 | 5.4:-2119512 | MS.gene024875:CDS |
| ATCATCATCATAATCACGTA+GGG | 0.594808 | 5.4:+2116077 | None:intergenic |
| GTAACAAAATCGATGGAAGA+GGG | 0.604074 | 5.4:-2119536 | None:intergenic |
| GGTTACAAGCTAACGAGGCA+GGG | 0.604854 | 5.4:-2117026 | MS.gene024875:CDS |
| GGTAACATTAACAATAAGAG+AGG | 0.605178 | 5.4:-2119515 | MS.gene024875:CDS |
| TATCATCATCATAATCACGT+AGG | 0.609428 | 5.4:+2116076 | None:intergenic |
| CAGTTGGTCACAGCATCACA+TGG | 0.611704 | 5.4:-2119367 | MS.gene024875:CDS |
| GAATGCAAACTTGTGCAGCA+AGG | 0.611800 | 5.4:+2118350 | None:intergenic |
| TGAAGGAAAGAGTAATCCAC+AGG | 0.618509 | 5.4:-2118380 | MS.gene024875:CDS |
| GGGAGTACCAGAAACAGCGA+AGG | 0.623127 | 5.4:+2119295 | None:intergenic |
| GATACTGAGAAATCAGCAGT+TGG | 0.641119 | 5.4:-2119383 | MS.gene024875:CDS |
| CAAGTCACCTCTGAGACAGA+AGG | 0.641811 | 5.4:-2116975 | MS.gene024875:CDS |
| TCTTCGTCCTTCTGTCTCAG+AGG | 0.641863 | 5.4:+2116968 | None:intergenic |
| GCAGCAAGGGCAAAGTCCTG+TGG | 0.646391 | 5.4:+2118364 | None:intergenic |
| GTATCTTTAAGATGGGATGG+AGG | 0.656769 | 5.4:-2116998 | MS.gene024875:CDS |
| ATAAATAGGGGTAGCAACTG+CGG | 0.656882 | 5.4:-2119203 | MS.gene024875:CDS |
| AGATCACAAATCTTTGAAGG+CGG | 0.659879 | 5.4:-2116052 | MS.gene024875:CDS |
| ATTCTGATAACAAACGACGA+TGG | 0.666629 | 5.4:-2119485 | MS.gene024875:CDS |
| GTACTGAGTGGCATAAATAG+GGG | 0.669770 | 5.4:-2119215 | MS.gene024875:CDS |
| AAAAGGGTTACAAGCTAACG+AGG | 0.689847 | 5.4:-2117031 | MS.gene024875:intron |
| ACACCCGATCTCGTACTGAG+TGG | 0.722593 | 5.4:-2119227 | MS.gene024875:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAGTAAAAACAATTTA+CGG | + | chr5.4:2116534-2116553 | None:intergenic | 10.0% |
| !!! | AAATTTTTTATTGTTACTTT+AGG | - | chr5.4:2117627-2117646 | MS.gene024875:intron | 10.0% |
| !! | AAAATAGTATAAATCATAAG+AGG | + | chr5.4:2116769-2116788 | None:intergenic | 15.0% |
| !! | AAATAGTATAAATCATAAGA+GGG | + | chr5.4:2116768-2116787 | None:intergenic | 15.0% |
| !! | ATATTAAATGAAAATACAGA+AGG | + | chr5.4:2118397-2118416 | None:intergenic | 15.0% |
| !!! | AGAATATAATCAATTTTCTT+AGG | + | chr5.4:2117720-2117739 | None:intergenic | 15.0% |
| !!! | TAAATAGAACAATTTTTAAC+AGG | + | chr5.4:2116669-2116688 | None:intergenic | 15.0% |
| !!! | TACTATTTTTATTTTTGCTA+AGG | - | chr5.4:2116780-2116799 | MS.gene024875:intron | 15.0% |
| !! | AAAGTTCAACTTAACAAATA+TGG | + | chr5.4:2117000-2117019 | None:intergenic | 20.0% |
| !! | AAATGTAAACTTCAATATGT+AGG | + | chr5.4:2118420-2118439 | None:intergenic | 20.0% |
| !! | AACTACATTATTATTCATTG+CGG | + | chr5.4:2119438-2119457 | None:intergenic | 20.0% |
| !! | AAGATTTATATGACAATTTC+TGG | + | chr5.4:2117768-2117787 | None:intergenic | 20.0% |
| !! | AAGTTTACATTTGTATTCAA+AGG | - | chr5.4:2118428-2118447 | MS.gene024875:intron | 20.0% |
| !! | AATAAGCATAATACATGATA+AGG | - | chr5.4:2117548-2117567 | MS.gene024875:intron | 20.0% |
| !! | ACAATTATAAGCTGATTAAT+TGG | + | chr5.4:2117028-2117047 | None:intergenic | 20.0% |
| !! | ACTTATTACAATATACCTTA+TGG | + | chr5.4:2117338-2117357 | None:intergenic | 20.0% |
| !! | ATAGTATTTATATCAGATCT+GGG | + | chr5.4:2118915-2118934 | None:intergenic | 20.0% |
| !! | ATCTTCTGTAACTAATTTAT+TGG | - | chr5.4:2118498-2118517 | MS.gene024875:intron | 20.0% |
| !! | CTATTTATTTCAAATGACAA+AGG | - | chr5.4:2116682-2116701 | MS.gene024875:intron | 20.0% |
| !! | GATTTATTCATAATATATGC+TGG | - | chr5.4:2117572-2117591 | MS.gene024875:intron | 20.0% |
| !! | TATAGTATTTATATCAGATC+TGG | + | chr5.4:2118916-2118935 | None:intergenic | 20.0% |
| !! | TATTTGAATTTGACAAAAAG+TGG | - | chr5.4:2119046-2119065 | MS.gene024875:intron | 20.0% |
| !!! | AGCAATGTAAATTATTTCTT+TGG | + | chr5.4:2116586-2116605 | None:intergenic | 20.0% |
| !!! | GCAATGTAAATTATTTCTTT+GGG | + | chr5.4:2116585-2116604 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTCAAACTTTTGT+AGG | - | chr5.4:2119462-2119481 | MS.gene024875:CDS | 20.0% |
| ! | AAAGTCTAAAGGTGATAAAA+TGG | + | chr5.4:2116413-2116432 | None:intergenic | 25.0% |
| ! | AACATAAATTAATGCTGTGA+TGG | - | chr5.4:2117525-2117544 | MS.gene024875:intron | 25.0% |
| ! | AACTAAAAAACTTACTTGGA+TGG | - | chr5.4:2119382-2119401 | MS.gene024875:CDS | 25.0% |
| ! | AATTTGACAGGCATTATATT+AGG | - | chr5.4:2117651-2117670 | MS.gene024875:intron | 25.0% |
| ! | ACACTAACAAACAATATAAG+TGG | + | chr5.4:2116481-2116500 | None:intergenic | 25.0% |
| ! | AGCATATTGTCTAATACTTT+CGG | - | chr5.4:2118771-2118790 | MS.gene024875:intron | 25.0% |
| ! | ATATTCAAAAAACATCTTCC+AGG | + | chr5.4:2117291-2117310 | None:intergenic | 25.0% |
| ! | ATTATGCAACATTTCAATGA+AGG | + | chr5.4:2118283-2118302 | None:intergenic | 25.0% |
| ! | GAAGAACTAAAAAACTTACT+TGG | - | chr5.4:2119378-2119397 | MS.gene024875:CDS | 25.0% |
| ! | GTATATATTGTCATGATATC+AGG | + | chr5.4:2118176-2118195 | None:intergenic | 25.0% |
| ! | TACTCAAATAAACAAACACA+CGG | + | chr5.4:2118058-2118077 | None:intergenic | 25.0% |
| ! | TAGTATTTATATCAGATCTG+GGG | + | chr5.4:2118914-2118933 | None:intergenic | 25.0% |
| ! | TATTCAAAAAACATCTTCCA+GGG | + | chr5.4:2117290-2117309 | None:intergenic | 25.0% |
| ! | TCATTGAAATGTTGCATAAT+GGG | - | chr5.4:2118283-2118302 | MS.gene024875:CDS | 25.0% |
| ! | TGAAAAGCTATTGCTATAAA+AGG | + | chr5.4:2117129-2117148 | None:intergenic | 25.0% |
| ! | TTATGCAACATTTCAATGAA+GGG | + | chr5.4:2118282-2118301 | None:intergenic | 25.0% |
| ! | TTCATTGAAATGTTGCATAA+TGG | - | chr5.4:2118282-2118301 | MS.gene024875:CDS | 25.0% |
| ! | TTGTGTGTTATGATAATTTG+TGG | - | chr5.4:2117933-2117952 | MS.gene024875:intron | 25.0% |
| ! | TTGTTTATTTGAGTATGTGT+TGG | - | chr5.4:2118063-2118082 | MS.gene024875:intron | 25.0% |
| !! | ATAGCAAATTTTTATCCTTG+TGG | - | chr5.4:2118097-2118116 | MS.gene024875:intron | 25.0% |
| !! | TGTGTGTTATGATAATTTGT+GGG | - | chr5.4:2117934-2117953 | MS.gene024875:intron | 25.0% |
| !!! | GGTAAAAGTATCTTTAAGAT+GGG | - | chr5.4:2118566-2118585 | MS.gene024875:intron | 25.0% |
| !!! | TTTAGTTCTTCCATATAACT+TGG | + | chr5.4:2119369-2119388 | None:intergenic | 25.0% |
| AACATACCAGTCATATGAAA+TGG | + | chr5.4:2116938-2116957 | None:intergenic | 30.0% | |
| AACATTAACAATAAGAGAGG+AGG | - | chr5.4:2116059-2116078 | MS.gene024875:CDS | 30.0% | |
| AACTTACGCACAATAAAACT+TGG | + | chr5.4:2117745-2117764 | None:intergenic | 30.0% | |
| AATGAATGTCTCGAGTATTA+TGG | - | chr5.4:2117060-2117079 | MS.gene024875:intron | 30.0% | |
| ACAGATACACCTAAAAACTT+TGG | - | chr5.4:2118647-2118666 | MS.gene024875:CDS | 30.0% | |
| ACTAATTACACAAACAGTGA+CGG | + | chr5.4:2116840-2116859 | None:intergenic | 30.0% | |
| ACTCAAATAAACAAACACAC+GGG | + | chr5.4:2118057-2118076 | None:intergenic | 30.0% | |
| ACTCTGTTTATAATAAGCAG+TGG | + | chr5.4:2119298-2119317 | None:intergenic | 30.0% | |
| AGTATTTATATCAGATCTGG+GGG | + | chr5.4:2118913-2118932 | None:intergenic | 30.0% | |
| ATCATCATCATAATCACGTA+GGG | + | chr5.4:2119497-2119516 | None:intergenic | 30.0% | |
| CATATGAAATGGAGATAGAA+GGG | + | chr5.4:2116927-2116946 | None:intergenic | 30.0% | |
| CCAAAACAATAAATTCCACA+AGG | + | chr5.4:2118115-2118134 | None:intergenic | 30.0% | |
| CTAGTTAACTCCTTATGAAA+GGG | + | chr5.4:2117859-2117878 | None:intergenic | 30.0% | |
| CTTTCCACTAATTTACAATG+CGG | + | chr5.4:2118201-2118220 | None:intergenic | 30.0% | |
| GAAATAGATGCCAAGTTATA+TGG | - | chr5.4:2119356-2119375 | MS.gene024875:CDS | 30.0% | |
| GCATTGTAAATTAGTGGAAA+GGG | - | chr5.4:2118200-2118219 | MS.gene024875:intron | 30.0% | |
| GGTAACATTAACAATAAGAG+AGG | - | chr5.4:2116056-2116075 | MS.gene024875:CDS | 30.0% | |
| TACAGATCACAAATCTTTGA+AGG | - | chr5.4:2119516-2119535 | MS.gene024875:CDS | 30.0% | |
| TAGTCAAGCACAATATTAAG+CGG | + | chr5.4:2118828-2118847 | None:intergenic | 30.0% | |
| TAGTTAACTCCTTATGAAAG+GGG | + | chr5.4:2117858-2117877 | None:intergenic | 30.0% | |
| TATCATCATCATAATCACGT+AGG | + | chr5.4:2119498-2119517 | None:intergenic | 30.0% | |
| TATCATGTTTGACCATTTGA+AGG | - | chr5.4:2117150-2117169 | MS.gene024875:intron | 30.0% | |
| TATGCAACATTTCAATGAAG+GGG | + | chr5.4:2118281-2118300 | None:intergenic | 30.0% | |
| TCATATGAAATGGAGATAGA+AGG | + | chr5.4:2116928-2116947 | None:intergenic | 30.0% | |
| TCTAGTTAACTCCTTATGAA+AGG | + | chr5.4:2117860-2117879 | None:intergenic | 30.0% | |
| TTATTATTCATTGCGGAAAG+AGG | + | chr5.4:2119431-2119450 | None:intergenic | 30.0% | |
| ! | AACAGCATCTTTTTGTAACA+AGG | + | chr5.4:2118313-2118332 | None:intergenic | 30.0% |
| ! | ACAGCATCTTTTTGTAACAA+GGG | + | chr5.4:2118312-2118331 | None:intergenic | 30.0% |
| ! | AGGACTATAGCTCTATTAAT+AGG | - | chr5.4:2117671-2117690 | MS.gene024875:intron | 30.0% |
| ! | CCTTGTGGAATTTATTGTTT+TGG | - | chr5.4:2118112-2118131 | MS.gene024875:intron | 30.0% |
| ! | GATGATGTACCAAAGTTTTT+AGG | + | chr5.4:2118659-2118678 | None:intergenic | 30.0% |
| ! | GTTACTTTAGGTAATTTGAC+AGG | - | chr5.4:2117639-2117658 | MS.gene024875:intron | 30.0% |
| ! | TCCATGAATATGAACTTGTT+TGG | + | chr5.4:2116246-2116265 | None:intergenic | 30.0% |
| ! | TTCAAACTTTTGTAGGTAAG+AGG | - | chr5.4:2119469-2119488 | MS.gene024875:CDS | 30.0% |
| !! | AAAATTTGCTATTCAACCAG+TGG | + | chr5.4:2118089-2118108 | None:intergenic | 30.0% |
| !! | AAAGTATCTTTAAGATGGGA+TGG | - | chr5.4:2118570-2118589 | MS.gene024875:intron | 30.0% |
| !! | AATGAACACAAGTTGATATG+TGG | + | chr5.4:2119132-2119151 | None:intergenic | 30.0% |
| !! | GGGTAAAAGTATCTTTAAGA+TGG | - | chr5.4:2118565-2118584 | MS.gene024875:intron | 30.0% |
| !! | GTGTTGTTGTTTATATTGCT+TGG | + | chr5.4:2119110-2119129 | None:intergenic | 30.0% |
| !! | TGAAGTTGTTTTGCACTATT+AGG | - | chr5.4:2118981-2119000 | MS.gene024875:intron | 30.0% |
| !!! | GTTTTTAGGTGTATCTGTAT+TGG | + | chr5.4:2118645-2118664 | None:intergenic | 30.0% |
| AACCAATGTTGCTAACCATA+AGG | - | chr5.4:2117320-2117339 | MS.gene024875:intron | 35.0% | |
| ACTACCGCATTGTAAATTAG+TGG | - | chr5.4:2118194-2118213 | MS.gene024875:intron | 35.0% | |
| AGAAGGGATATTGTTGAAGA+AGG | + | chr5.4:2116911-2116930 | None:intergenic | 35.0% | |
| ATAAAGAAACAAAGCTACCC+TGG | - | chr5.4:2117270-2117289 | MS.gene024875:intron | 35.0% | |
| ATCTTGACAAAATATGTGGG+GGG | + | chr5.4:2119272-2119291 | None:intergenic | 35.0% | |
| ATGAAGAAAAGAGAGACAGA+AGG | + | chr5.4:2119021-2119040 | None:intergenic | 35.0% | |
| ATGCAACATTTCAATGAAGG+GGG | + | chr5.4:2118280-2118299 | None:intergenic | 35.0% | |
| ATTCTGATAACAAACGACGA+TGG | - | chr5.4:2116086-2116105 | MS.gene024875:CDS | 35.0% | |
| ATTGGACTTATTATCAGTGG+CGG | - | chr5.4:2118855-2118874 | MS.gene024875:intron | 35.0% | |
| CGCATTGTAAATTAGTGGAA+AGG | - | chr5.4:2118199-2118218 | MS.gene024875:intron | 35.0% | |
| CGGATCTTGACAAAATATGT+GGG | + | chr5.4:2119275-2119294 | None:intergenic | 35.0% | |
| CGGTAGTTATATCCAAAGAA+TGG | - | chr5.4:2117827-2117846 | MS.gene024875:intron | 35.0% | |
| CTATCTCCATTTCATATGAC+TGG | - | chr5.4:2116929-2116948 | MS.gene024875:CDS | 35.0% | |
| CTCAAATAAACAAACACACG+GGG | + | chr5.4:2118056-2118075 | None:intergenic | 35.0% | |
| CTCGCAAATAAAAGATGTTC+AGG | + | chr5.4:2118689-2118708 | None:intergenic | 35.0% | |
| CTGTTTATAATAAGCAGTGG+CGG | + | chr5.4:2119295-2119314 | None:intergenic | 35.0% | |
| GAATTTGACAAAAAGTGGCT+AGG | - | chr5.4:2119051-2119070 | MS.gene024875:intron | 35.0% | |
| GACATAGAATAGCCTTCAAA+TGG | + | chr5.4:2117165-2117184 | None:intergenic | 35.0% | |
| GATCTTGACAAAATATGTGG+GGG | + | chr5.4:2119273-2119292 | None:intergenic | 35.0% | |
| GATTCGAACCATTGATCTTA+AGG | - | chr5.4:2119078-2119097 | MS.gene024875:intron | 35.0% | |
| GCCAAACAAGTTCATATTCA+TGG | - | chr5.4:2116242-2116261 | MS.gene024875:intron | 35.0% | |
| GGATCTTGACAAAATATGTG+GGG | + | chr5.4:2119274-2119293 | None:intergenic | 35.0% | |
| GTATTTATATCAGATCTGGG+GGG | + | chr5.4:2118912-2118931 | None:intergenic | 35.0% | |
| GTCATTGGACTTATTATCAG+TGG | - | chr5.4:2118852-2118871 | MS.gene024875:intron | 35.0% | |
| GTCTAAAGGTGATAAAATGG+TGG | + | chr5.4:2116410-2116429 | None:intergenic | 35.0% | |
| TAACTACCGTGATTTCATAG+AGG | + | chr5.4:2117816-2117835 | None:intergenic | 35.0% | |
| TACCTTATGGTTAGCAACAT+TGG | + | chr5.4:2117325-2117344 | None:intergenic | 35.0% | |
| TCCAATCATAAACTCAGTAC+TGG | - | chr5.4:2117242-2117261 | MS.gene024875:intron | 35.0% | |
| TGAAGAAAAGAGAGACAGAA+GGG | + | chr5.4:2119020-2119039 | None:intergenic | 35.0% | |
| TGTAGTAGGAAAGAGTGATT+TGG | + | chr5.4:2116327-2116346 | None:intergenic | 35.0% | |
| TTAGGCTTGTCTCTAATACA+TGG | + | chr5.4:2117702-2117721 | None:intergenic | 35.0% | |
| TTATGGTTAGCAACATTGGT+TGG | + | chr5.4:2117321-2117340 | None:intergenic | 35.0% | |
| ! | ACCAGTACTGAGTTTATGAT+TGG | + | chr5.4:2117246-2117265 | None:intergenic | 35.0% |
| ! | AGATCACAAATCTTTGAAGG+CGG | - | chr5.4:2119519-2119538 | MS.gene024875:CDS | 35.0% |
| ! | TTGAAATGTTGCATAATGGG+CGG | - | chr5.4:2118286-2118305 | MS.gene024875:CDS | 35.0% |
| !! | ACATCTTTTATTTGCGAGAG+AGG | - | chr5.4:2118691-2118710 | MS.gene024875:CDS | 35.0% |
| !! | GCTCTTCTTCTAAAGTCTAA+AGG | + | chr5.4:2116424-2116443 | None:intergenic | 35.0% |
| !! | GGTTCTAAGATGATTCTCTT+AGG | - | chr5.4:2117593-2117612 | MS.gene024875:intron | 35.0% |
| AAAAGGGTTACAAGCTAACG+AGG | - | chr5.4:2118540-2118559 | MS.gene024875:intron | 40.0% | |
| AAAGGGGAATTGCCATTCTT+TGG | + | chr5.4:2117842-2117861 | None:intergenic | 40.0% | |
| AATAAACAAACACACGGGGA+TGG | + | chr5.4:2118052-2118071 | None:intergenic | 40.0% | |
| AATGCAAACTTGTGCAGCAA+GGG | + | chr5.4:2117223-2117242 | None:intergenic | 40.0% | |
| ACATTTCAATGAAGGGGGAA+AGG | + | chr5.4:2118275-2118294 | None:intergenic | 40.0% | |
| AGAAACAGCGAAGGAAGAAA+CGG | + | chr5.4:2116270-2116289 | None:intergenic | 40.0% | |
| AGGAGTTAACTAGACCTATC+TGG | - | chr5.4:2117866-2117885 | MS.gene024875:intron | 40.0% | |
| ATAAACAAACACACGGGGAT+GGG | + | chr5.4:2118051-2118070 | None:intergenic | 40.0% | |
| ATAAATAGGGGTAGCAACTG+CGG | - | chr5.4:2116368-2116387 | MS.gene024875:intron | 40.0% | |
| ATGGCAATTCCCCTTTCATA+AGG | - | chr5.4:2117846-2117865 | MS.gene024875:intron | 40.0% | |
| ATTACTCTTTCCTTCAACCC+TGG | + | chr5.4:2117187-2117206 | None:intergenic | 40.0% | |
| CGTACTGAGTGGCATAAATA+GGG | - | chr5.4:2116355-2116374 | MS.gene024875:intron | 40.0% | |
| GAAGAAAAGAGAGACAGAAG+GGG | + | chr5.4:2119019-2119038 | None:intergenic | 40.0% | |
| GAGGGTCATTTCAAATTTCG+AGG | + | chr5.4:2116750-2116769 | None:intergenic | 40.0% | |
| GATACTGAGAAATCAGCAGT+TGG | - | chr5.4:2116188-2116207 | MS.gene024875:intron | 40.0% | |
| GCGGATCTTGACAAAATATG+TGG | + | chr5.4:2119276-2119295 | None:intergenic | 40.0% | |
| GGATACCACCTTAAGATCAA+TGG | + | chr5.4:2119089-2119108 | None:intergenic | 40.0% | |
| GGTGGTGAAAACATTTGATG+TGG | - | chr5.4:2117992-2118011 | MS.gene024875:intron | 40.0% | |
| GTACTGAGTGGCATAAATAG+GGG | - | chr5.4:2116356-2116375 | MS.gene024875:intron | 40.0% | |
| GTCTTTCGTAATCACCAGAT+AGG | + | chr5.4:2117883-2117902 | None:intergenic | 40.0% | |
| GTGTTGAGCTGTTGATATGT+TGG | - | chr5.4:2118359-2118378 | MS.gene024875:CDS | 40.0% | |
| TATTCTATGTCCAGGGTTGA+AGG | - | chr5.4:2117174-2117193 | MS.gene024875:intron | 40.0% | |
| TCGAACCATTGATCTTAAGG+TGG | - | chr5.4:2119081-2119100 | MS.gene024875:intron | 40.0% | |
| TCGTACTGAGTGGCATAAAT+AGG | - | chr5.4:2116354-2116373 | MS.gene024875:intron | 40.0% | |
| TCGTCTGTGCATCTGAAAAA+GGG | - | chr5.4:2118524-2118543 | MS.gene024875:intron | 40.0% | |
| TCGTTGTCTCTTCATAGCTT+AGG | + | chr5.4:2116716-2116735 | None:intergenic | 40.0% | |
| TCTCGAGTATTATGGCTTAC+TGG | - | chr5.4:2117068-2117087 | MS.gene024875:intron | 40.0% | |
| TGAAGGAAAGAGTAATCCAC+AGG | - | chr5.4:2117191-2117210 | MS.gene024875:intron | 40.0% | |
| TGAAGGCTATTCTATGTCCA+GGG | - | chr5.4:2117167-2117186 | MS.gene024875:intron | 40.0% | |
| TGCCTGAGTAAACACTGAAA+GGG | + | chr5.4:2116867-2116886 | None:intergenic | 40.0% | |
| TTCCCTTTCAGTGTTTACTC+AGG | - | chr5.4:2116862-2116881 | MS.gene024875:intron | 40.0% | |
| TTGAAGGCTATTCTATGTCC+AGG | - | chr5.4:2117166-2117185 | MS.gene024875:intron | 40.0% | |
| ! | CCATCAATCCTTTTCCTACT+CGG | + | chr5.4:2117412-2117431 | None:intergenic | 40.0% |
| ! | GATCACAAATCTTTGAAGGC+GGG | - | chr5.4:2119520-2119539 | MS.gene024875:CDS | 40.0% |
| ! | GTTTTCTTAACCAGTGAACG+AGG | + | chr5.4:2117907-2117926 | None:intergenic | 40.0% |
| ! | TGAACTTGTTTGGCAGCTAT+AGG | + | chr5.4:2116236-2116255 | None:intergenic | 40.0% |
| !! | ACTGCTGATTTCTCAGTATC+AGG | + | chr5.4:2116188-2116207 | None:intergenic | 40.0% |
| !! | CTTTTATTTGCGAGAGAGGT+AGG | - | chr5.4:2118695-2118714 | MS.gene024875:CDS | 40.0% |
| !! | GTATCTTTAAGATGGGATGG+AGG | - | chr5.4:2118573-2118592 | MS.gene024875:intron | 40.0% |
| !! | GTGACGGACAAAAATTTCTG+TGG | + | chr5.4:2116824-2116843 | None:intergenic | 40.0% |
| CCGAGTAGGAAAAGGATTGA+TGG | - | chr5.4:2117409-2117428 | MS.gene024875:intron | 45.0% | |
| GAATGCAAACTTGTGCAGCA+AGG | + | chr5.4:2117224-2117243 | None:intergenic | 45.0% | |
| GAGGTTGACTAGTGACTACA+TGG | + | chr5.4:2117388-2117407 | None:intergenic | 45.0% | |
| GCGATCAAAACACAGCTATC+TGG | + | chr5.4:2117498-2117517 | None:intergenic | 45.0% | |
| GTCGTCTGTGCATCTGAAAA+AGG | - | chr5.4:2118523-2118542 | MS.gene024875:intron | 45.0% | |
| GTGCCTGAGTAAACACTGAA+AGG | + | chr5.4:2116868-2116887 | None:intergenic | 45.0% | |
| GTGCTTGACTATGCTGTCAT+TGG | - | chr5.4:2118837-2118856 | MS.gene024875:intron | 45.0% | |
| TAAACAAACACACGGGGATG+GGG | + | chr5.4:2118050-2118069 | None:intergenic | 45.0% | |
| TATGCCACTCAGTACGAGAT+CGG | + | chr5.4:2116351-2116370 | None:intergenic | 45.0% | |
| TGACAAAAAGTGGCTAGGCA+AGG | - | chr5.4:2119056-2119075 | MS.gene024875:intron | 45.0% | |
| TGCACATTCTACAAGCAGAG+AGG | + | chr5.4:2118245-2118264 | None:intergenic | 45.0% | |
| ! | GTTTCTTCCTTCGCTGTTTC+TGG | - | chr5.4:2116269-2116288 | MS.gene024875:intron | 45.0% |
| ! | GTTTTCACCACCAAACCACT+GGG | + | chr5.4:2117984-2118003 | None:intergenic | 45.0% |
| ! | TCCAAGAGAAGTGCAATCAG+CGG | + | chr5.4:2116300-2116319 | None:intergenic | 45.0% |
| ! | TGTTTTCACCACCAAACCAC+TGG | + | chr5.4:2117985-2118004 | None:intergenic | 45.0% |
| ! | TTCATTTTCCACTGCGACAC+AGG | + | chr5.4:2118965-2118984 | None:intergenic | 45.0% |
| ! | TTTGAGTATGTGTTGGCCAC+TGG | - | chr5.4:2118070-2118089 | MS.gene024875:intron | 45.0% |
| !! | AATCCTTTTCCTACTCGGTG+AGG | + | chr5.4:2117407-2117426 | None:intergenic | 45.0% |
| !! | TATCAGTGGCGGATCTTCTT+GGG | - | chr5.4:2118866-2118885 | MS.gene024875:intron | 45.0% |
| !! | TTATCAGTGGCGGATCTTCT+TGG | - | chr5.4:2118865-2118884 | MS.gene024875:intron | 45.0% |
| !! | ATATATATATAACAAATATT+TGG | - | chr5.4:2119244-2119263 | MS.gene024875:CDS | 5.0% |
| ACCGTGATTTCATAGAGGCG+AGG | + | chr5.4:2117811-2117830 | None:intergenic | 50.0% | |
| ACGAAAGACTCCTCGTTCAC+TGG | - | chr5.4:2117894-2117913 | MS.gene024875:intron | 50.0% | |
| ACTAGTCAACCTCACCGAGT+AGG | - | chr5.4:2117395-2117414 | MS.gene024875:intron | 50.0% | |
| AGTACGAGATCGGGTGTAGT+AGG | + | chr5.4:2116341-2116360 | None:intergenic | 50.0% | |
| ATGCCACTCAGTACGAGATC+GGG | + | chr5.4:2116350-2116369 | None:intergenic | 50.0% | |
| ATGTTATGCCTGTGTCGCAG+TGG | - | chr5.4:2118954-2118973 | MS.gene024875:intron | 50.0% | |
| CAACCTCACCGAGTAGGAAA+AGG | - | chr5.4:2117401-2117420 | MS.gene024875:intron | 50.0% | |
| CAGTTGGTCACAGCATCACA+TGG | - | chr5.4:2116204-2116223 | MS.gene024875:intron | 50.0% | |
| GACACCAAAGCTCTTAAGCC+AGG | + | chr5.4:2116122-2116141 | None:intergenic | 50.0% | |
| GATGTTGCAACCCAGTGGTT+TGG | - | chr5.4:2117971-2117990 | MS.gene024875:intron | 50.0% | |
| GCCTCGCCTCTATGAAATCA+CGG | - | chr5.4:2117807-2117826 | MS.gene024875:intron | 50.0% | |
| GGAATCCCAAGTTCGAACCA+GGG | - | chr5.4:2118013-2118032 | MS.gene024875:intron | 50.0% | |
| GGTTACAAGCTAACGAGGCA+GGG | - | chr5.4:2118545-2118564 | MS.gene024875:intron | 50.0% | |
| GTGGAAAGGGTGACTACTTC+TGG | - | chr5.4:2118213-2118232 | MS.gene024875:intron | 50.0% | |
| TCTTCGTCCTTCTGTCTCAG+AGG | + | chr5.4:2118606-2118625 | None:intergenic | 50.0% | |
| TGGAATCCCAAGTTCGAACC+AGG | - | chr5.4:2118012-2118031 | MS.gene024875:intron | 50.0% | |
| ! | CCAAGAGAAGTGCAATCAGC+GGG | + | chr5.4:2116299-2116318 | None:intergenic | 50.0% |
| ! | GTTTACTCAGGCACTGTAGC+TGG | - | chr5.4:2116874-2116893 | MS.gene024875:intron | 50.0% |
| !! | CAAGTCACCTCTGAGACAGA+AGG | - | chr5.4:2118596-2118615 | MS.gene024875:intron | 50.0% |
| ACACCCGATCTCGTACTGAG+TGG | - | chr5.4:2116344-2116363 | MS.gene024875:intron | 55.0% | |
| ACCACTGGGTTGCAACATCG+AGG | + | chr5.4:2117970-2117989 | None:intergenic | 55.0% | |
| ATGGGGAAATGTGGTGACCC+TGG | + | chr5.4:2118033-2118052 | None:intergenic | 55.0% | |
| CATTGCGGAAAGAGGATGCG+AGG | + | chr5.4:2119423-2119442 | None:intergenic | 55.0% | |
| CGCTCCTGGCTTAAGAGCTT+TGG | - | chr5.4:2116115-2116134 | MS.gene024875:intron | 55.0% | |
| GGATCTTCTTGGGTGCCCAT+GGG | - | chr5.4:2118876-2118895 | MS.gene024875:intron | 55.0% | |
| GGGTTACAAGCTAACGAGGC+AGG | - | chr5.4:2118544-2118563 | MS.gene024875:intron | 55.0% | |
| TCCTCGATGTTGCAACCCAG+TGG | - | chr5.4:2117966-2117985 | MS.gene024875:intron | 55.0% | |
| ! | CCCGCTGATTGCACTTCTCT+TGG | - | chr5.4:2116296-2116315 | MS.gene024875:intron | 55.0% |
| ! | GGTGACCCTGGTTCGAACTT+GGG | + | chr5.4:2118021-2118040 | None:intergenic | 55.0% |
| ! | GTTGCAACCCAGTGGTTTGG+TGG | - | chr5.4:2117974-2117993 | MS.gene024875:intron | 55.0% |
| ! | TGGTGACCCTGGTTCGAACT+TGG | + | chr5.4:2118022-2118041 | None:intergenic | 55.0% |
| !! | GGGAGTACCAGAAACAGCGA+AGG | + | chr5.4:2116279-2116298 | None:intergenic | 55.0% |
| ATCAGATCTGGGGGGAGCCA+TGG | + | chr5.4:2118904-2118923 | None:intergenic | 60.0% | |
| CACACGGGGATGGGGAAATG+TGG | + | chr5.4:2118042-2118061 | None:intergenic | 60.0% | |
| CACTGTAGCTGGAGCTCGAG+AGG | - | chr5.4:2116885-2116904 | MS.gene024875:CDS | 60.0% | |
| CGGATCTTCTTGGGTGCCCA+TGG | - | chr5.4:2118875-2118894 | MS.gene024875:intron | 60.0% | |
| GACGATGGAATCGACGCTCC+TGG | - | chr5.4:2116101-2116120 | MS.gene024875:intron | 60.0% | |
| GCAGCAAGGGCAAAGTCCTG+TGG | + | chr5.4:2117210-2117229 | None:intergenic | 60.0% | |
| TTGGGTGCCCATGGGAGCCA+TGG | - | chr5.4:2118884-2118903 | MS.gene024875:intron | 65.0% | |
| GGGGGAGCCATGGCTCCCAT+GGG | + | chr5.4:2118894-2118913 | None:intergenic | 70.0% | |
| GGGGGGAGCCATGGCTCCCA+TGG | + | chr5.4:2118895-2118914 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2116047 | 2119546 | 2116047 | ID=MS.gene024875 |
| chr5.4 | mRNA | 2116047 | 2119546 | 2116047 | ID=MS.gene024875.t1;Parent=MS.gene024875 |
| chr5.4 | exon | 2119194 | 2119546 | 2119194 | ID=MS.gene024875.t1.exon1;Parent=MS.gene024875.t1 |
| chr5.4 | CDS | 2119194 | 2119546 | 2119194 | ID=cds.MS.gene024875.t1;Parent=MS.gene024875.t1 |
| chr5.4 | exon | 2118643 | 2118720 | 2118643 | ID=MS.gene024875.t1.exon2;Parent=MS.gene024875.t1 |
| chr5.4 | CDS | 2118643 | 2118720 | 2118643 | ID=cds.MS.gene024875.t1;Parent=MS.gene024875.t1 |
| chr5.4 | exon | 2118252 | 2118405 | 2118252 | ID=MS.gene024875.t1.exon3;Parent=MS.gene024875.t1 |
| chr5.4 | CDS | 2118252 | 2118405 | 2118252 | ID=cds.MS.gene024875.t1;Parent=MS.gene024875.t1 |
| chr5.4 | exon | 2116881 | 2117048 | 2116881 | ID=MS.gene024875.t1.exon4;Parent=MS.gene024875.t1 |
| chr5.4 | CDS | 2116881 | 2117048 | 2116881 | ID=cds.MS.gene024875.t1;Parent=MS.gene024875.t1 |
| chr5.4 | exon | 2116047 | 2116109 | 2116047 | ID=MS.gene024875.t1.exon5;Parent=MS.gene024875.t1 |
| chr5.4 | CDS | 2116047 | 2116109 | 2116047 | ID=cds.MS.gene024875.t1;Parent=MS.gene024875.t1 |
| Gene Sequence |
| Protein sequence |
