Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026566.t1 | XP_003589656.1 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 1.20E-90 | 342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026566.t1 | Q9S7J9 | 66.9 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 1.5e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026566.t1 | G7I9Z6 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 8.6e-91 | 342.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026566 | MS.gene02897 | PPI |
| MS.gene026566 | MS.gene59112 | PPI |
| MS.gene026566 | MS.gene003140 | PPI |
| MS.gene026566 | MS.gene01947 | PPI |
| MS.gene026566 | MS.gene048263 | PPI |
| MS.gene026566 | MS.gene62964 | PPI |
| MS.gene026566 | MS.gene83105 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026566.t1 | MTR_1g031650 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 6.80e-121 | 338 |
| MS.gene026566.t1 | MTR_1g031650 | 96.269 | 134 | 5 | 0 | 39 | 172 | 2 | 135 | 5.49e-92 | 264 |
| MS.gene026566.t1 | MTR_4g084280 | 65.644 | 163 | 55 | 1 | 4 | 166 | 3 | 164 | 4.75e-76 | 225 |
| MS.gene026566.t1 | MTR_3g067585 | 62.346 | 162 | 60 | 1 | 4 | 165 | 3 | 163 | 9.08e-74 | 219 |
| MS.gene026566.t1 | MTR_2g011590 | 58.537 | 164 | 67 | 1 | 4 | 167 | 2 | 164 | 5.65e-70 | 209 |
| MS.gene026566.t1 | MTR_8g107340 | 58.537 | 164 | 67 | 1 | 4 | 167 | 19 | 181 | 1.31e-69 | 209 |
| MS.gene026566.t1 | MTR_6g069470 | 55.488 | 164 | 72 | 1 | 4 | 167 | 15 | 177 | 1.23e-64 | 196 |
| MS.gene026566.t1 | MTR_8g088320 | 44.937 | 158 | 85 | 2 | 5 | 161 | 164 | 320 | 1.74e-37 | 131 |
| MS.gene026566.t1 | MTR_8g038400 | 42.949 | 156 | 87 | 2 | 5 | 159 | 209 | 363 | 3.39e-37 | 131 |
| MS.gene026566.t1 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 5 | 159 | 212 | 366 | 1.63e-34 | 124 |
| MS.gene026566.t1 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 5 | 159 | 242 | 396 | 3.80e-34 | 124 |
| MS.gene026566.t1 | MTR_2g030230 | 42.405 | 158 | 89 | 2 | 5 | 161 | 171 | 327 | 5.12e-34 | 122 |
| MS.gene026566.t1 | MTR_2g027100 | 42.282 | 149 | 83 | 2 | 6 | 152 | 5 | 152 | 1.50e-30 | 109 |
| MS.gene026566.t1 | MTR_2g027360 | 34.118 | 85 | 54 | 2 | 9 | 92 | 3 | 86 | 1.57e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026566.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene026566.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene026566.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene026566.t1 | AT2G01540 | 60.355 | 169 | 64 | 2 | 1 | 167 | 1 | 168 | 6.51e-72 | 214 |
| MS.gene026566.t1 | AT1G70810 | 60.736 | 163 | 63 | 1 | 5 | 167 | 4 | 165 | 3.99e-70 | 209 |
| MS.gene026566.t1 | AT3G17980 | 56.364 | 165 | 71 | 1 | 3 | 167 | 14 | 177 | 1.63e-68 | 206 |
| MS.gene026566.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 7 | 169 | 5.11e-67 | 202 |
| MS.gene026566.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 7 | 169 | 5.11e-67 | 202 |
| MS.gene026566.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 38 | 200 | 6.33e-67 | 202 |
| MS.gene026566.t1 | AT1G73580 | 54.545 | 165 | 74 | 1 | 3 | 167 | 5 | 168 | 4.56e-66 | 199 |
| MS.gene026566.t1 | AT1G23140 | 56.707 | 164 | 70 | 1 | 4 | 167 | 3 | 165 | 4.28e-64 | 194 |
| MS.gene026566.t1 | AT1G70790 | 70.769 | 130 | 36 | 1 | 40 | 167 | 2 | 131 | 1.62e-63 | 192 |
| MS.gene026566.t1 | AT1G66360 | 53.374 | 163 | 73 | 2 | 4 | 164 | 3 | 164 | 2.60e-62 | 190 |
| MS.gene026566.t1 | AT5G37740 | 51.497 | 167 | 77 | 2 | 4 | 167 | 3 | 168 | 5.02e-62 | 189 |
| MS.gene026566.t1 | AT1G70800 | 53.374 | 163 | 75 | 1 | 5 | 167 | 13 | 174 | 8.96e-61 | 186 |
| MS.gene026566.t1 | AT5G37740 | 48.295 | 176 | 79 | 2 | 4 | 167 | 3 | 178 | 2.47e-59 | 182 |
| MS.gene026566.t1 | AT1G48590 | 44.848 | 165 | 57 | 2 | 3 | 167 | 38 | 168 | 1.67e-46 | 150 |
| MS.gene026566.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 143 | 297 | 5.61e-39 | 134 |
| MS.gene026566.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene026566.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene026566.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene026566.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene026566.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 178 | 332 | 2.50e-38 | 134 |
| MS.gene026566.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 178 | 332 | 2.50e-38 | 134 |
| MS.gene026566.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene026566.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene026566.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene026566.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene026566.t1 | AT3G07940 | 42.208 | 154 | 87 | 2 | 5 | 157 | 227 | 379 | 3.71e-35 | 126 |
Find 39 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTTGCAAAGGTCTATT+AGG | 0.188697 | 1.1:-17007941 | MS.gene026566:CDS |
| CTGAAGAGAGCAGTTGTATT+TGG | 0.198293 | 1.1:-17008054 | MS.gene026566:CDS |
| TTTCTCCGTCGACGACAAAA+TGG | 0.198849 | 1.1:-17008191 | MS.gene026566:CDS |
| AAGAATTAACCCTTTCAATA+AGG | 0.243737 | 1.1:-17008480 | MS.gene026566:CDS |
| TCAATCTTAGAATCATTTCT+TGG | 0.308077 | 1.1:+17008014 | None:intergenic |
| ATTTGTACACATTGAGCATA+TGG | 0.352534 | 1.1:+17008145 | None:intergenic |
| AGAATTAACCCTTTCAATAA+GGG | 0.363219 | 1.1:-17008479 | MS.gene026566:CDS |
| CAAATGGTTGTGCAATCAAA+AGG | 0.374974 | 1.1:-17008105 | MS.gene026566:CDS |
| ATTGAGTGGGTGGATGTTCC+AGG | 0.378200 | 1.1:-17007959 | MS.gene026566:CDS |
| TCAAAAGGGTTCAAGCAAAT+AGG | 0.382577 | 1.1:-17008090 | MS.gene026566:CDS |
| GGCATGGATAATAATGTTCT+TGG | 0.394699 | 1.1:-17009663 | MS.gene026566:CDS |
| TTCTCCGTCGACGACAAAAT+GGG | 0.428457 | 1.1:-17008190 | MS.gene026566:CDS |
| CTAAAACTTCGTATTAAAAG+AGG | 0.428755 | 1.1:-17009636 | MS.gene026566:CDS |
| TGTCAACATTGGTCATGAAC+AGG | 0.430334 | 1.1:-17009565 | MS.gene026566:intron |
| AAATGTTGAGAGTGGAGAAT+TGG | 0.430897 | 1.1:-17007990 | MS.gene026566:CDS |
| CCAATGTTGACAACAACATA+AGG | 0.434516 | 1.1:+17009576 | None:intergenic |
| CAGGTTGCAAAGGTCTATTA+GGG | 0.446108 | 1.1:-17007940 | MS.gene026566:CDS |
| CTCTTACATCCCTTATTGAA+AGG | 0.451223 | 1.1:+17008470 | None:intergenic |
| ATCTTAGAATCATTTCTTGG+AGG | 0.484585 | 1.1:+17008017 | None:intergenic |
| CCTAATAGACCTTTGCAACC+TGG | 0.491322 | 1.1:+17007941 | None:intergenic |
| TCTTACATCCCTTATTGAAA+GGG | 0.497303 | 1.1:+17008471 | None:intergenic |
| TGTAAGAGTTCCAATACGTC+TGG | 0.504818 | 1.1:-17008455 | MS.gene026566:intron |
| GTTAATTCTTCATTCCACTC+AGG | 0.513309 | 1.1:+17008493 | None:intergenic |
| AAGTTGGATACTCTTCCAAA+TGG | 0.514104 | 1.1:-17008121 | MS.gene026566:CDS |
| TTAATTCTTCATTCCACTCA+GGG | 0.514723 | 1.1:+17008494 | None:intergenic |
| CCTTATGTTGTTGTCAACAT+TGG | 0.522538 | 1.1:-17009576 | MS.gene026566:CDS |
| AAATGGTTGTGCAATCAAAA+GGG | 0.538475 | 1.1:-17008104 | MS.gene026566:CDS |
| CAATGTTGACAACAACATAA+GGG | 0.538879 | 1.1:+17009577 | None:intergenic |
| AGATTGAGAAATGTTGAGAG+TGG | 0.545029 | 1.1:-17007998 | MS.gene026566:CDS |
| TGAGAGTGGAGAATTGGTTG+TGG | 0.553380 | 1.1:-17007984 | MS.gene026566:CDS |
| GTGGATGTTCCAGGTTGCAA+AGG | 0.560781 | 1.1:-17007950 | MS.gene026566:CDS |
| GACAACAACATAAGGGTCGC+TGG | 0.561798 | 1.1:+17009584 | None:intergenic |
| TCAATGTGTACAAATGAAGT+TGG | 0.578075 | 1.1:-17008137 | MS.gene026566:CDS |
| AAAACAATTGCAACCCTGAG+TGG | 0.600340 | 1.1:-17008507 | MS.gene026566:CDS |
| AATTGGTTGTGGAAATTGAG+TGG | 0.610176 | 1.1:-17007973 | MS.gene026566:CDS |
| GGTTGTGGAAATTGAGTGGG+TGG | 0.614075 | 1.1:-17007969 | MS.gene026566:CDS |
| ATTGGTTGTGGAAATTGAGT+GGG | 0.621207 | 1.1:-17007972 | MS.gene026566:CDS |
| TACAACTGCTCTCTTCAGCA+AGG | 0.655573 | 1.1:+17008059 | None:intergenic |
| AGGTTGCAAAGGTCTATTAG+GGG | 0.692342 | 1.1:-17007939 | MS.gene026566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAGTTAAAATCAATTA+CGG | - | chr1.1:17008919-17008938 | MS.gene026566:intron | 10.0% |
| !! | ACAATTCATATGTATAAAAA+AGG | + | chr1.1:17008730-17008749 | None:intergenic | 15.0% |
| !! | CAATTCATATGTATAAAAAA+GGG | + | chr1.1:17008729-17008748 | None:intergenic | 15.0% |
| !!! | AACAAAAAATTATTTTTACG+AGG | - | chr1.1:17008655-17008674 | MS.gene026566:intron | 15.0% |
| !! | GTTATGCAAAATTATGTTAT+TGG | - | chr1.1:17008313-17008332 | MS.gene026566:intron | 20.0% |
| !! | TAAACTGAACAATAAATTTG+AGG | - | chr1.1:17008852-17008871 | MS.gene026566:intron | 20.0% |
| !! | TCATCAACAAATAAGTTAAT+TGG | + | chr1.1:17009331-17009350 | None:intergenic | 20.0% |
| !!! | AATAACTAAATGCATTTTGT+GGG | - | chr1.1:17009254-17009273 | MS.gene026566:intron | 20.0% |
| !!! | AATTCTTTTGACAAAATTAC+CGG | + | chr1.1:17008197-17008216 | None:intergenic | 20.0% |
| !!! | AATTTTTTGTTTTTAGACTC+AGG | + | chr1.1:17008646-17008665 | None:intergenic | 20.0% |
| !!! | ATACTATGAATTGATTTTAC+AGG | - | chr1.1:17008574-17008593 | MS.gene026566:intron | 20.0% |
| !!! | TGTGTTTTATAATTGAAGTT+TGG | - | chr1.1:17008749-17008768 | MS.gene026566:intron | 20.0% |
| ! | AAGAATTAACCCTTTCAATA+AGG | - | chr1.1:17009108-17009127 | MS.gene026566:intron | 25.0% |
| ! | AGAATTAACCCTTTCAATAA+GGG | - | chr1.1:17009109-17009128 | MS.gene026566:intron | 25.0% |
| ! | ATCTGTATTGAATTTACTCT+TGG | + | chr1.1:17008422-17008441 | None:intergenic | 25.0% |
| ! | CTAAAACTTCGTATTAAAAG+AGG | - | chr1.1:17007952-17007971 | MS.gene026566:CDS | 25.0% |
| ! | TCAATCTTAGAATCATTTCT+TGG | + | chr1.1:17009577-17009596 | None:intergenic | 25.0% |
| ! | TGGTTATGCAATAACAAAAA+TGG | - | chr1.1:17008803-17008822 | MS.gene026566:intron | 25.0% |
| !! | AATTTACAACCTTTCGTTTT+TGG | + | chr1.1:17008622-17008641 | None:intergenic | 25.0% |
| !! | ATTCTTTTGACAAAATTACC+GGG | + | chr1.1:17008196-17008215 | None:intergenic | 25.0% |
| !! | CAATAACTAAATGCATTTTG+TGG | - | chr1.1:17009253-17009272 | MS.gene026566:intron | 25.0% |
| !! | GTTTTATAATTGAAGTTTGG+TGG | - | chr1.1:17008752-17008771 | MS.gene026566:intron | 25.0% |
| !! | TTTGCAAATATCAAGAGTTT+TGG | + | chr1.1:17008688-17008707 | None:intergenic | 25.0% |
| AAATGGTTGTGCAATCAAAA+GGG | - | chr1.1:17009484-17009503 | MS.gene026566:intron | 30.0% | |
| ACTTGACTCTGTAACTTTAA+AGG | + | chr1.1:17009295-17009314 | None:intergenic | 30.0% | |
| AGAGAAAAATAGAGAAAGCA+AGG | + | chr1.1:17008055-17008074 | None:intergenic | 30.0% | |
| AGCAGTTGTATTTGGAAAAA+TGG | - | chr1.1:17009542-17009561 | MS.gene026566:intron | 30.0% | |
| AGTTACCATTTACAAAGCAA+AGG | + | chr1.1:17008392-17008411 | None:intergenic | 30.0% | |
| ATATCCAAAACCTTATGGTA+TGG | - | chr1.1:17008356-17008375 | MS.gene026566:intron | 30.0% | |
| ATCTTAGAATCATTTCTTGG+AGG | + | chr1.1:17009574-17009593 | None:intergenic | 30.0% | |
| ATTTGTACACATTGAGCATA+TGG | + | chr1.1:17009446-17009465 | None:intergenic | 30.0% | |
| CAATGTTGACAACAACATAA+GGG | + | chr1.1:17008014-17008033 | None:intergenic | 30.0% | |
| TAGGAATATCCAAAACCTTA+TGG | - | chr1.1:17008351-17008370 | MS.gene026566:intron | 30.0% | |
| TCAATGTGTACAAATGAAGT+TGG | - | chr1.1:17009451-17009470 | MS.gene026566:intron | 30.0% | |
| TCTTACATCCCTTATTGAAA+GGG | + | chr1.1:17009120-17009139 | None:intergenic | 30.0% | |
| TTAATTCTTCATTCCACTCA+GGG | + | chr1.1:17009097-17009116 | None:intergenic | 30.0% | |
| ! | CTTTTCCTTTGCTTTGTAAA+TGG | - | chr1.1:17008384-17008403 | MS.gene026566:intron | 30.0% |
| ! | TTGGTGATATTGTTAAGAGT+AGG | - | chr1.1:17008332-17008351 | MS.gene026566:intron | 30.0% |
| ! | TTGTCATCACATATTCCTTT+TGG | - | chr1.1:17008455-17008474 | MS.gene026566:intron | 30.0% |
| !! | CATTTTAGTCACCATTTTGA+GGG | - | chr1.1:17008540-17008559 | MS.gene026566:intron | 30.0% |
| !! | GCTTTCTCTATTTTTCTCTA+AGG | - | chr1.1:17008056-17008075 | MS.gene026566:CDS | 30.0% |
| !! | TCATTTTAGTCACCATTTTG+AGG | - | chr1.1:17008539-17008558 | MS.gene026566:intron | 30.0% |
| !! | TTGATTTTAGTCCCTCAAAA+TGG | + | chr1.1:17008554-17008573 | None:intergenic | 30.0% |
| AAAACTAGCTCCATCTAACT+TGG | - | chr1.1:17009161-17009180 | MS.gene026566:intron | 35.0% | |
| AAAAGCTGAACCATACCATA+AGG | + | chr1.1:17008369-17008388 | None:intergenic | 35.0% | |
| AAATGTTGAGAGTGGAGAAT+TGG | - | chr1.1:17009598-17009617 | MS.gene026566:CDS | 35.0% | |
| AAGTTGGATACTCTTCCAAA+TGG | - | chr1.1:17009467-17009486 | MS.gene026566:intron | 35.0% | |
| AATTGGTTGTGGAAATTGAG+TGG | - | chr1.1:17009615-17009634 | MS.gene026566:CDS | 35.0% | |
| AGATTGAGAAATGTTGAGAG+TGG | - | chr1.1:17009590-17009609 | MS.gene026566:CDS | 35.0% | |
| ATTGGTTGTGGAAATTGAGT+GGG | - | chr1.1:17009616-17009635 | MS.gene026566:CDS | 35.0% | |
| CAAATGGTTGTGCAATCAAA+AGG | - | chr1.1:17009483-17009502 | MS.gene026566:intron | 35.0% | |
| CCAATGTTGACAACAACATA+AGG | + | chr1.1:17008015-17008034 | None:intergenic | 35.0% | |
| CCTTATGTTGTTGTCAACAT+TGG | - | chr1.1:17008012-17008031 | MS.gene026566:CDS | 35.0% | |
| CTCTTACATCCCTTATTGAA+AGG | + | chr1.1:17009121-17009140 | None:intergenic | 35.0% | |
| GAACAAAGACCAAAAACGAA+AGG | - | chr1.1:17008610-17008629 | MS.gene026566:intron | 35.0% | |
| GTTAATTCTTCATTCCACTC+AGG | + | chr1.1:17009098-17009117 | None:intergenic | 35.0% | |
| TAATGGTTCGTATGTGTGTT+TGG | - | chr1.1:17008783-17008802 | MS.gene026566:intron | 35.0% | |
| TCAAAAGGGTTCAAGCAAAT+AGG | - | chr1.1:17009498-17009517 | MS.gene026566:intron | 35.0% | |
| TCATGATTCCGTCAAAATCA+CGG | - | chr1.1:17008250-17008269 | MS.gene026566:intron | 35.0% | |
| ! | TGAACCATACCATAAGGTTT+TGG | + | chr1.1:17008363-17008382 | None:intergenic | 35.0% |
| !! | CACATATTCCTTTTGGTCTT+TGG | - | chr1.1:17008462-17008481 | MS.gene026566:CDS | 35.0% |
| !! | CTTTTGATTGCACAACCATT+TGG | + | chr1.1:17009485-17009504 | None:intergenic | 35.0% |
| !! | TTTTTGTTTCTCTTCGCAGA+CGG | - | chr1.1:17009358-17009377 | MS.gene026566:intron | 35.0% |
| AAAACAATTGCAACCCTGAG+TGG | - | chr1.1:17009081-17009100 | MS.gene026566:intron | 40.0% | |
| AGGTTGCAAAGGTCTATTAG+GGG | - | chr1.1:17009649-17009668 | MS.gene026566:CDS | 40.0% | |
| ATGATTCCGTCAAAATCACG+GGG | - | chr1.1:17008252-17008271 | MS.gene026566:intron | 40.0% | |
| CAGGTTGCAAAGGTCTATTA+GGG | - | chr1.1:17009648-17009667 | MS.gene026566:CDS | 40.0% | |
| CATGATTCCGTCAAAATCAC+GGG | - | chr1.1:17008251-17008270 | MS.gene026566:intron | 40.0% | |
| CTGAAGAGAGCAGTTGTATT+TGG | - | chr1.1:17009534-17009553 | MS.gene026566:intron | 40.0% | |
| GTAATGCATGCCAAGTTAGA+TGG | + | chr1.1:17009174-17009193 | None:intergenic | 40.0% | |
| TGTAAGAGTTCCAATACGTC+TGG | - | chr1.1:17009133-17009152 | MS.gene026566:intron | 40.0% | |
| TGTCAACATTGGTCATGAAC+AGG | - | chr1.1:17008023-17008042 | MS.gene026566:CDS | 40.0% | |
| ! | CAAAAACCCCGTGATTTTGA+CGG | + | chr1.1:17008261-17008280 | None:intergenic | 40.0% |
| ! | GTTTTGCTTACCAGACGTAT+TGG | + | chr1.1:17009146-17009165 | None:intergenic | 40.0% |
| ACAGAACGCCAAAGACCAAA+AGG | + | chr1.1:17008473-17008492 | None:intergenic | 45.0% | |
| CCAGGTTGCAAAGGTCTATT+AGG | - | chr1.1:17009647-17009666 | MS.gene026566:CDS | 45.0% | |
| CCTAATAGACCTTTGCAACC+TGG | + | chr1.1:17009650-17009669 | None:intergenic | 45.0% | |
| TACAACTGCTCTCTTCAGCA+AGG | + | chr1.1:17009532-17009551 | None:intergenic | 45.0% | |
| TGAGAGTGGAGAATTGGTTG+TGG | - | chr1.1:17009604-17009623 | MS.gene026566:CDS | 45.0% | |
| TTCTCCGTCGACGACAAAAT+GGG | - | chr1.1:17009398-17009417 | MS.gene026566:intron | 45.0% | |
| TTTCTCCGTCGACGACAAAA+TGG | - | chr1.1:17009397-17009416 | MS.gene026566:intron | 45.0% | |
| ! | ATCACCCATTTTGTCGTCGA+CGG | + | chr1.1:17009405-17009424 | None:intergenic | 45.0% |
| ! | GTTTGGTGGCACACACATAA+TGG | - | chr1.1:17008766-17008785 | MS.gene026566:intron | 45.0% |
| ATTGAGTGGGTGGATGTTCC+AGG | - | chr1.1:17009629-17009648 | MS.gene026566:CDS | 50.0% | |
| GACAACAACATAAGGGTCGC+TGG | + | chr1.1:17008007-17008026 | None:intergenic | 50.0% | |
| GGTTGTGGAAATTGAGTGGG+TGG | - | chr1.1:17009619-17009638 | MS.gene026566:CDS | 50.0% | |
| GTGGATGTTCCAGGTTGCAA+AGG | - | chr1.1:17009638-17009657 | MS.gene026566:CDS | 50.0% | |
| TTGCAGAATCATCGTGTGCC+CGG | - | chr1.1:17008175-17008194 | MS.gene026566:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 17007928 | 17009682 | 17007928 | ID=MS.gene026566 |
| chr1.1 | mRNA | 17007928 | 17009682 | 17007928 | ID=MS.gene026566.t1;Parent=MS.gene026566 |
| chr1.1 | exon | 17009566 | 17009682 | 17009566 | ID=MS.gene026566.t1.exon1;Parent=MS.gene026566.t1 |
| chr1.1 | CDS | 17009566 | 17009682 | 17009566 | ID=cds.MS.gene026566.t1;Parent=MS.gene026566.t1 |
| chr1.1 | exon | 17008456 | 17008551 | 17008456 | ID=MS.gene026566.t1.exon2;Parent=MS.gene026566.t1 |
| chr1.1 | CDS | 17008456 | 17008551 | 17008456 | ID=cds.MS.gene026566.t1;Parent=MS.gene026566.t1 |
| chr1.1 | exon | 17007928 | 17008233 | 17007928 | ID=MS.gene026566.t1.exon3;Parent=MS.gene026566.t1 |
| chr1.1 | CDS | 17007928 | 17008233 | 17007928 | ID=cds.MS.gene026566.t1;Parent=MS.gene026566.t1 |
| Gene Sequence |
| Protein sequence |
