Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62964.t1 | XP_003589656.1 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 1.20E-90 | 342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62964.t1 | Q9S7J9 | 66.9 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 1.5e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62964.t1 | G7I9Z6 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 8.6e-91 | 342.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048263 | MS.gene62964 | PPI |
| MS.gene62964 | MS.gene02897 | PPI |
| MS.gene62964 | MS.gene003140 | PPI |
| MS.gene62964 | MS.gene01947 | PPI |
| MS.gene59112 | MS.gene62964 | PPI |
| MS.gene026566 | MS.gene62964 | PPI |
| MS.gene62964 | MS.gene83105 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62964.t1 | MTR_1g031650 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 6.80e-121 | 338 |
| MS.gene62964.t1 | MTR_1g031650 | 96.269 | 134 | 5 | 0 | 39 | 172 | 2 | 135 | 5.49e-92 | 264 |
| MS.gene62964.t1 | MTR_4g084280 | 65.644 | 163 | 55 | 1 | 4 | 166 | 3 | 164 | 4.75e-76 | 225 |
| MS.gene62964.t1 | MTR_3g067585 | 62.346 | 162 | 60 | 1 | 4 | 165 | 3 | 163 | 9.08e-74 | 219 |
| MS.gene62964.t1 | MTR_2g011590 | 58.537 | 164 | 67 | 1 | 4 | 167 | 2 | 164 | 5.65e-70 | 209 |
| MS.gene62964.t1 | MTR_8g107340 | 58.537 | 164 | 67 | 1 | 4 | 167 | 19 | 181 | 1.31e-69 | 209 |
| MS.gene62964.t1 | MTR_6g069470 | 55.488 | 164 | 72 | 1 | 4 | 167 | 15 | 177 | 1.23e-64 | 196 |
| MS.gene62964.t1 | MTR_8g088320 | 44.937 | 158 | 85 | 2 | 5 | 161 | 164 | 320 | 1.74e-37 | 131 |
| MS.gene62964.t1 | MTR_8g038400 | 42.949 | 156 | 87 | 2 | 5 | 159 | 209 | 363 | 3.39e-37 | 131 |
| MS.gene62964.t1 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 5 | 159 | 212 | 366 | 1.63e-34 | 124 |
| MS.gene62964.t1 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 5 | 159 | 242 | 396 | 3.80e-34 | 124 |
| MS.gene62964.t1 | MTR_2g030230 | 42.405 | 158 | 89 | 2 | 5 | 161 | 171 | 327 | 5.12e-34 | 122 |
| MS.gene62964.t1 | MTR_2g027100 | 42.282 | 149 | 83 | 2 | 6 | 152 | 5 | 152 | 1.50e-30 | 109 |
| MS.gene62964.t1 | MTR_2g027360 | 34.118 | 85 | 54 | 2 | 9 | 92 | 3 | 86 | 1.57e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62964.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene62964.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene62964.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene62964.t1 | AT2G01540 | 60.355 | 169 | 64 | 2 | 1 | 167 | 1 | 168 | 6.51e-72 | 214 |
| MS.gene62964.t1 | AT1G70810 | 60.736 | 163 | 63 | 1 | 5 | 167 | 4 | 165 | 3.99e-70 | 209 |
| MS.gene62964.t1 | AT3G17980 | 56.364 | 165 | 71 | 1 | 3 | 167 | 14 | 177 | 1.63e-68 | 206 |
| MS.gene62964.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 7 | 169 | 5.11e-67 | 202 |
| MS.gene62964.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 7 | 169 | 5.11e-67 | 202 |
| MS.gene62964.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 38 | 200 | 6.33e-67 | 202 |
| MS.gene62964.t1 | AT1G73580 | 54.545 | 165 | 74 | 1 | 3 | 167 | 5 | 168 | 4.56e-66 | 199 |
| MS.gene62964.t1 | AT1G23140 | 56.707 | 164 | 70 | 1 | 4 | 167 | 3 | 165 | 4.28e-64 | 194 |
| MS.gene62964.t1 | AT1G70790 | 70.769 | 130 | 36 | 1 | 40 | 167 | 2 | 131 | 1.62e-63 | 192 |
| MS.gene62964.t1 | AT1G66360 | 53.374 | 163 | 73 | 2 | 4 | 164 | 3 | 164 | 2.60e-62 | 190 |
| MS.gene62964.t1 | AT5G37740 | 51.497 | 167 | 77 | 2 | 4 | 167 | 3 | 168 | 5.02e-62 | 189 |
| MS.gene62964.t1 | AT1G70800 | 53.374 | 163 | 75 | 1 | 5 | 167 | 13 | 174 | 8.96e-61 | 186 |
| MS.gene62964.t1 | AT5G37740 | 48.295 | 176 | 79 | 2 | 4 | 167 | 3 | 178 | 2.47e-59 | 182 |
| MS.gene62964.t1 | AT1G48590 | 44.848 | 165 | 57 | 2 | 3 | 167 | 38 | 168 | 1.67e-46 | 150 |
| MS.gene62964.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 143 | 297 | 5.61e-39 | 134 |
| MS.gene62964.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene62964.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene62964.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene62964.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene62964.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 178 | 332 | 2.50e-38 | 134 |
| MS.gene62964.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 178 | 332 | 2.50e-38 | 134 |
| MS.gene62964.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene62964.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene62964.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene62964.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene62964.t1 | AT3G07940 | 42.208 | 154 | 87 | 2 | 5 | 157 | 227 | 379 | 3.71e-35 | 126 |
Find 40 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTTGCAAAGGTCTATT+AGG | 0.188697 | 1.3:-16814508 | MS.gene62964:CDS |
| CTGAAGAGAGCAGTTGTATT+TGG | 0.198293 | 1.3:-16814621 | MS.gene62964:CDS |
| TTTCTCCGTCGACGACAAAA+TGG | 0.198849 | 1.3:-16814758 | MS.gene62964:CDS |
| AAGAATTAACCCTTTCAATA+AGG | 0.243737 | 1.3:-16815132 | MS.gene62964:CDS |
| TCAATCTTAGAATCATTTCT+TGG | 0.308077 | 1.3:+16814581 | None:intergenic |
| ATTTGTACACATTGAGCATA+TGG | 0.352534 | 1.3:+16814712 | None:intergenic |
| AGAATTAACCCTTTCAATAA+GGG | 0.363219 | 1.3:-16815131 | MS.gene62964:CDS |
| ATTGAGTGGGTGGATGTTCC+AGG | 0.378200 | 1.3:-16814526 | MS.gene62964:CDS |
| GGCATGGATAATAATGTTCT+TGG | 0.394699 | 1.3:-16816314 | MS.gene62964:CDS |
| CTCTTGATTGCACAACCATT+TGG | 0.400401 | 1.3:+16814673 | None:intergenic |
| TCAAGAGGGTTCAAGCAAAT+AGG | 0.403301 | 1.3:-16814657 | MS.gene62964:CDS |
| TTCTCCGTCGACGACAAAAT+GGG | 0.428457 | 1.3:-16814757 | MS.gene62964:CDS |
| CTAAAACTTCGTATTAAAAG+AGG | 0.428755 | 1.3:-16816287 | MS.gene62964:CDS |
| TGTCAACATTGGTCATGAAC+AGG | 0.430334 | 1.3:-16816216 | MS.gene62964:intron |
| AAATGTTGAGAGTGGAGAAT+TGG | 0.430897 | 1.3:-16814557 | MS.gene62964:CDS |
| CCAATGTTGACAACAACATA+AGG | 0.434516 | 1.3:+16816227 | None:intergenic |
| CAGGTTGCAAAGGTCTATTA+GGG | 0.446108 | 1.3:-16814507 | MS.gene62964:CDS |
| CTCTTACATCCCTTATTGAA+AGG | 0.451223 | 1.3:+16815122 | None:intergenic |
| ATCTTAGAATCATTTCTTGG+AGG | 0.484585 | 1.3:+16814584 | None:intergenic |
| CCTAATAGACCTTTGCAACC+TGG | 0.491322 | 1.3:+16814508 | None:intergenic |
| TCTTACATCCCTTATTGAAA+GGG | 0.497303 | 1.3:+16815123 | None:intergenic |
| TGTAAGAGTTCCAATACGTC+TGG | 0.504818 | 1.3:-16815107 | MS.gene62964:intron |
| GTTAATTCTTCATTCCACTC+AGG | 0.513309 | 1.3:+16815145 | None:intergenic |
| AAGTTGGATACTCTTCCAAA+TGG | 0.514104 | 1.3:-16814688 | MS.gene62964:CDS |
| TTAATTCTTCATTCCACTCA+GGG | 0.514723 | 1.3:+16815146 | None:intergenic |
| CCTTATGTTGTTGTCAACAT+TGG | 0.522538 | 1.3:-16816227 | MS.gene62964:CDS |
| CAATGTTGACAACAACATAA+GGG | 0.538879 | 1.3:+16816228 | None:intergenic |
| AGATTGAGAAATGTTGAGAG+TGG | 0.545029 | 1.3:-16814565 | MS.gene62964:CDS |
| TGAGAGTGGAGAATTGGTTG+TGG | 0.553380 | 1.3:-16814551 | MS.gene62964:CDS |
| GTGGATGTTCCAGGTTGCAA+AGG | 0.560781 | 1.3:-16814517 | MS.gene62964:CDS |
| GACAACAACATAAGGGTCGC+TGG | 0.561798 | 1.3:+16816235 | None:intergenic |
| CAAATGGTTGTGCAATCAAG+AGG | 0.565429 | 1.3:-16814672 | MS.gene62964:CDS |
| TCAATGTGTACAAATGAAGT+TGG | 0.578075 | 1.3:-16814704 | MS.gene62964:CDS |
| AAAACAATTGCAACCCTGAG+TGG | 0.600340 | 1.3:-16815159 | MS.gene62964:CDS |
| AATTGGTTGTGGAAATTGAG+TGG | 0.610176 | 1.3:-16814540 | MS.gene62964:CDS |
| GGTTGTGGAAATTGAGTGGG+TGG | 0.614075 | 1.3:-16814536 | MS.gene62964:CDS |
| ATTGGTTGTGGAAATTGAGT+GGG | 0.621207 | 1.3:-16814539 | MS.gene62964:CDS |
| AAATGGTTGTGCAATCAAGA+GGG | 0.626231 | 1.3:-16814671 | MS.gene62964:CDS |
| TACAACTGCTCTCTTCAGCA+AGG | 0.655573 | 1.3:+16814626 | None:intergenic |
| AGGTTGCAAAGGTCTATTAG+GGG | 0.692342 | 1.3:-16814506 | MS.gene62964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAGAAATTATTATTAATAA+CGG | - | chr1.3:16815864-16815883 | MS.gene62964:intron | 10.0% |
| !!! | AAAAAAAAAAAAATTTTACG+AGG | - | chr1.3:16815220-16815239 | MS.gene62964:intron | 10.0% |
| !!! | TTTTAAGTTAAAATCAATTA+CGG | - | chr1.3:16815485-16815504 | MS.gene62964:intron | 10.0% |
| !! | ACAATTCATATGTATAAAAA+AGG | + | chr1.3:16815295-16815314 | None:intergenic | 15.0% |
| !! | CAATTCATATGTATAAAAAA+GGG | + | chr1.3:16815294-16815313 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTAGACTC+AGG | + | chr1.3:16815213-16815232 | None:intergenic | 15.0% |
| !! | GTTATGCAAAATTATGTTAT+TGG | - | chr1.3:16814880-16814899 | MS.gene62964:intron | 20.0% |
| !! | TAAACTGAACAATAAATTTG+AGG | - | chr1.3:16815418-16815437 | MS.gene62964:intron | 20.0% |
| !!! | AATTCTTTTGACAAAATTAC+CGG | + | chr1.3:16814764-16814783 | None:intergenic | 20.0% |
| !!! | ATACTATGAATTGATTTTAC+AGG | - | chr1.3:16815141-16815160 | MS.gene62964:CDS | 20.0% |
| !!! | TGTGTTTTATAATTGAAGTT+TGG | - | chr1.3:16815314-16815333 | MS.gene62964:intron | 20.0% |
| ! | AAGAATTAACCCTTTCAATA+AGG | - | chr1.3:16815674-16815693 | MS.gene62964:intron | 25.0% |
| ! | AGAATTAACCCTTTCAATAA+GGG | - | chr1.3:16815675-16815694 | MS.gene62964:intron | 25.0% |
| ! | ATCTGTATTGAATTTACTCT+TGG | + | chr1.3:16814989-16815008 | None:intergenic | 25.0% |
| ! | CTAAAACTTCGTATTAAAAG+AGG | - | chr1.3:16814519-16814538 | MS.gene62964:CDS | 25.0% |
| ! | TCAATCTTAGAATCATTTCT+TGG | + | chr1.3:16816228-16816247 | None:intergenic | 25.0% |
| ! | TGGTTATGCAATAACAAAAA+TGG | - | chr1.3:16815369-16815388 | MS.gene62964:intron | 25.0% |
| !! | AATTTACAACCTTTCGTTTT+TGG | + | chr1.3:16815189-16815208 | None:intergenic | 25.0% |
| !! | ATCATTTTACAACCATTTTG+TGG | - | chr1.3:16815900-16815919 | MS.gene62964:intron | 25.0% |
| !! | ATTCTTTTGACAAAATTACC+GGG | + | chr1.3:16814763-16814782 | None:intergenic | 25.0% |
| !! | GTTTTATAATTGAAGTTTGG+TGG | - | chr1.3:16815317-16815336 | MS.gene62964:intron | 25.0% |
| !! | TTTGCAAATATCAAGAGTTT+TGG | + | chr1.3:16815253-16815272 | None:intergenic | 25.0% |
| AGAGAAAAATAGAGAAAGCA+AGG | + | chr1.3:16814622-16814641 | None:intergenic | 30.0% | |
| AGCAGTTGTATTTGGAAAAA+TGG | - | chr1.3:16816193-16816212 | MS.gene62964:intron | 30.0% | |
| AGTTACCATTTACAAAGCAA+AGG | + | chr1.3:16814959-16814978 | None:intergenic | 30.0% | |
| ATATCCAAAACCTTATGGTA+TGG | - | chr1.3:16814923-16814942 | MS.gene62964:intron | 30.0% | |
| ATCTTAGAATCATTTCTTGG+AGG | + | chr1.3:16816225-16816244 | None:intergenic | 30.0% | |
| ATTTGTACACATTGAGCATA+TGG | + | chr1.3:16816097-16816116 | None:intergenic | 30.0% | |
| CAATGTTGACAACAACATAA+GGG | + | chr1.3:16814581-16814600 | None:intergenic | 30.0% | |
| TAGGAATATCCAAAACCTTA+TGG | - | chr1.3:16814918-16814937 | MS.gene62964:intron | 30.0% | |
| TCAATGTGTACAAATGAAGT+TGG | - | chr1.3:16816102-16816121 | MS.gene62964:intron | 30.0% | |
| TCTTACATCCCTTATTGAAA+GGG | + | chr1.3:16815686-16815705 | None:intergenic | 30.0% | |
| TTAATTCTTCATTCCACTCA+GGG | + | chr1.3:16815663-16815682 | None:intergenic | 30.0% | |
| ! | AATCTGAAATCTCCACAAAA+TGG | + | chr1.3:16815915-16815934 | None:intergenic | 30.0% |
| ! | CTTTTCCTTTGCTTTGTAAA+TGG | - | chr1.3:16814951-16814970 | MS.gene62964:intron | 30.0% |
| ! | TTGGTGATATTGTTAAGAGT+AGG | - | chr1.3:16814899-16814918 | MS.gene62964:intron | 30.0% |
| ! | TTGTCATCACATATTCCTTT+TGG | - | chr1.3:16815022-16815041 | MS.gene62964:intron | 30.0% |
| !! | CATTTTAGTCACCATTTTGA+GGG | - | chr1.3:16815107-16815126 | MS.gene62964:intron | 30.0% |
| !! | GCTTTCTCTATTTTTCTCTA+AGG | - | chr1.3:16814623-16814642 | MS.gene62964:CDS | 30.0% |
| !! | TCATTTTAGTCACCATTTTG+AGG | - | chr1.3:16815106-16815125 | MS.gene62964:intron | 30.0% |
| !! | TTGATTTTAGTCCCTCAAAA+TGG | + | chr1.3:16815121-16815140 | None:intergenic | 30.0% |
| AAAAGCTGAACCATACCATA+AGG | + | chr1.3:16814936-16814955 | None:intergenic | 35.0% | |
| AAATGGTTGTGCAATCAAGA+GGG | - | chr1.3:16816135-16816154 | MS.gene62964:intron | 35.0% | |
| AAATGTTGAGAGTGGAGAAT+TGG | - | chr1.3:16816249-16816268 | MS.gene62964:CDS | 35.0% | |
| AAGTTGGATACTCTTCCAAA+TGG | - | chr1.3:16816118-16816137 | MS.gene62964:intron | 35.0% | |
| AATTGGTTGTGGAAATTGAG+TGG | - | chr1.3:16816266-16816285 | MS.gene62964:CDS | 35.0% | |
| AGATTGAGAAATGTTGAGAG+TGG | - | chr1.3:16816241-16816260 | MS.gene62964:CDS | 35.0% | |
| ATTGGTTGTGGAAATTGAGT+GGG | - | chr1.3:16816267-16816286 | MS.gene62964:CDS | 35.0% | |
| CCAATGTTGACAACAACATA+AGG | + | chr1.3:16814582-16814601 | None:intergenic | 35.0% | |
| CCTTATGTTGTTGTCAACAT+TGG | - | chr1.3:16814579-16814598 | MS.gene62964:CDS | 35.0% | |
| CTCTTACATCCCTTATTGAA+AGG | + | chr1.3:16815687-16815706 | None:intergenic | 35.0% | |
| GAACAAAGACCAAAAACGAA+AGG | - | chr1.3:16815177-16815196 | MS.gene62964:CDS | 35.0% | |
| GTAATGCATGCTAAGTTAGA+TGG | + | chr1.3:16815740-16815759 | None:intergenic | 35.0% | |
| GTTAATTCTTCATTCCACTC+AGG | + | chr1.3:16815664-16815683 | None:intergenic | 35.0% | |
| TAATGGTTCGTATGTGTGTT+TGG | - | chr1.3:16815349-16815368 | MS.gene62964:intron | 35.0% | |
| TCATGATTCCGTCAAAATCA+CGG | - | chr1.3:16814817-16814836 | MS.gene62964:intron | 35.0% | |
| ! | GTTTTACTTACCAGACGTAT+TGG | + | chr1.3:16815712-16815731 | None:intergenic | 35.0% |
| ! | TGAACCATACCATAAGGTTT+TGG | + | chr1.3:16814930-16814949 | None:intergenic | 35.0% |
| !! | CACATATTCCTTTTGGTCTT+TGG | - | chr1.3:16815029-16815048 | MS.gene62964:intron | 35.0% |
| !! | TTTTTGTTTCTTTCCGCAGA+CGG | - | chr1.3:16816009-16816028 | MS.gene62964:intron | 35.0% |
| AAAACAATTGCAACCCTGAG+TGG | - | chr1.3:16815647-16815666 | MS.gene62964:intron | 40.0% | |
| AGGTTGCAAAGGTCTATTAG+GGG | - | chr1.3:16816300-16816319 | MS.gene62964:CDS | 40.0% | |
| ATGATTCCGTCAAAATCACG+GGG | - | chr1.3:16814819-16814838 | MS.gene62964:intron | 40.0% | |
| CAAATGGTTGTGCAATCAAG+AGG | - | chr1.3:16816134-16816153 | MS.gene62964:intron | 40.0% | |
| CAGGTTGCAAAGGTCTATTA+GGG | - | chr1.3:16816299-16816318 | MS.gene62964:CDS | 40.0% | |
| CATGATTCCGTCAAAATCAC+GGG | - | chr1.3:16814818-16814837 | MS.gene62964:intron | 40.0% | |
| CTCTTGATTGCACAACCATT+TGG | + | chr1.3:16816136-16816155 | None:intergenic | 40.0% | |
| CTGAAGAGAGCAGTTGTATT+TGG | - | chr1.3:16816185-16816204 | MS.gene62964:intron | 40.0% | |
| TCAAGAGGGTTCAAGCAAAT+AGG | - | chr1.3:16816149-16816168 | MS.gene62964:intron | 40.0% | |
| TCTTTGTCAAAAACCGTCTG+CGG | + | chr1.3:16816025-16816044 | None:intergenic | 40.0% | |
| TGTAAGAGTTCCAATACGTC+TGG | - | chr1.3:16815699-16815718 | MS.gene62964:intron | 40.0% | |
| TGTCAACATTGGTCATGAAC+AGG | - | chr1.3:16814590-16814609 | MS.gene62964:CDS | 40.0% | |
| ! | CAAAAACCCCGTGATTTTGA+CGG | + | chr1.3:16814828-16814847 | None:intergenic | 40.0% |
| ! | TTTGGTGGCAACACACATAA+TGG | - | chr1.3:16815332-16815351 | MS.gene62964:intron | 40.0% |
| ACAGAACGCCAAAGACCAAA+AGG | + | chr1.3:16815040-16815059 | None:intergenic | 45.0% | |
| CCAGGTTGCAAAGGTCTATT+AGG | - | chr1.3:16816298-16816317 | MS.gene62964:CDS | 45.0% | |
| CCTAATAGACCTTTGCAACC+TGG | + | chr1.3:16816301-16816320 | None:intergenic | 45.0% | |
| TACAACTGCTCTCTTCAGCA+AGG | + | chr1.3:16816183-16816202 | None:intergenic | 45.0% | |
| TGAGAGTGGAGAATTGGTTG+TGG | - | chr1.3:16816255-16816274 | MS.gene62964:CDS | 45.0% | |
| TTCTCCGTCGACGACAAAAT+GGG | - | chr1.3:16816049-16816068 | MS.gene62964:intron | 45.0% | |
| TTTCTCCGTCGACGACAAAA+TGG | - | chr1.3:16816048-16816067 | MS.gene62964:intron | 45.0% | |
| ! | ATCACCCATTTTGTCGTCGA+CGG | + | chr1.3:16816056-16816075 | None:intergenic | 45.0% |
| ATTGAGTGGGTGGATGTTCC+AGG | - | chr1.3:16816280-16816299 | MS.gene62964:CDS | 50.0% | |
| GACAACAACATAAGGGTCGC+TGG | + | chr1.3:16814574-16814593 | None:intergenic | 50.0% | |
| GGTTGTGGAAATTGAGTGGG+TGG | - | chr1.3:16816270-16816289 | MS.gene62964:CDS | 50.0% | |
| GTGGATGTTCCAGGTTGCAA+AGG | - | chr1.3:16816289-16816308 | MS.gene62964:CDS | 50.0% | |
| TTGCAGAATCATCGTGTGCC+CGG | - | chr1.3:16814742-16814761 | MS.gene62964:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16814495 | 16816333 | 16814495 | ID=MS.gene62964 |
| chr1.3 | mRNA | 16814495 | 16816333 | 16814495 | ID=MS.gene62964.t1;Parent=MS.gene62964 |
| chr1.3 | exon | 16816217 | 16816333 | 16816217 | ID=MS.gene62964.t1.exon1;Parent=MS.gene62964.t1 |
| chr1.3 | CDS | 16816217 | 16816333 | 16816217 | ID=cds.MS.gene62964.t1;Parent=MS.gene62964.t1 |
| chr1.3 | exon | 16815108 | 16815203 | 16815108 | ID=MS.gene62964.t1.exon2;Parent=MS.gene62964.t1 |
| chr1.3 | CDS | 16815108 | 16815203 | 16815108 | ID=cds.MS.gene62964.t1;Parent=MS.gene62964.t1 |
| chr1.3 | exon | 16814495 | 16814800 | 16814495 | ID=MS.gene62964.t1.exon3;Parent=MS.gene62964.t1 |
| chr1.3 | CDS | 16814495 | 16814800 | 16814495 | ID=cds.MS.gene62964.t1;Parent=MS.gene62964.t1 |
| Gene Sequence |
| Protein sequence |
