Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59112.t1 | XP_003589656.1 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 1.20E-90 | 342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59112.t1 | Q9S7J9 | 66.9 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 1.5e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59112.t1 | G7I9Z6 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 8.6e-91 | 342.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048263 | MS.gene59112 | PPI |
| MS.gene026566 | MS.gene59112 | PPI |
| MS.gene59112 | MS.gene003140 | PPI |
| MS.gene59112 | MS.gene01947 | PPI |
| MS.gene59112 | MS.gene62964 | PPI |
| MS.gene59112 | MS.gene83105 | PPI |
| MS.gene59112 | MS.gene02897 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59112.t1 | MTR_1g031650 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 6.80e-121 | 338 |
| MS.gene59112.t1 | MTR_1g031650 | 96.269 | 134 | 5 | 0 | 39 | 172 | 2 | 135 | 5.49e-92 | 264 |
| MS.gene59112.t1 | MTR_4g084280 | 65.644 | 163 | 55 | 1 | 4 | 166 | 3 | 164 | 4.75e-76 | 225 |
| MS.gene59112.t1 | MTR_3g067585 | 62.346 | 162 | 60 | 1 | 4 | 165 | 3 | 163 | 9.08e-74 | 219 |
| MS.gene59112.t1 | MTR_2g011590 | 58.537 | 164 | 67 | 1 | 4 | 167 | 2 | 164 | 5.65e-70 | 209 |
| MS.gene59112.t1 | MTR_8g107340 | 58.537 | 164 | 67 | 1 | 4 | 167 | 19 | 181 | 1.31e-69 | 209 |
| MS.gene59112.t1 | MTR_6g069470 | 55.488 | 164 | 72 | 1 | 4 | 167 | 15 | 177 | 1.23e-64 | 196 |
| MS.gene59112.t1 | MTR_8g088320 | 44.937 | 158 | 85 | 2 | 5 | 161 | 164 | 320 | 1.74e-37 | 131 |
| MS.gene59112.t1 | MTR_8g038400 | 42.949 | 156 | 87 | 2 | 5 | 159 | 209 | 363 | 3.39e-37 | 131 |
| MS.gene59112.t1 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 5 | 159 | 212 | 366 | 1.63e-34 | 124 |
| MS.gene59112.t1 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 5 | 159 | 242 | 396 | 3.80e-34 | 124 |
| MS.gene59112.t1 | MTR_2g030230 | 42.405 | 158 | 89 | 2 | 5 | 161 | 171 | 327 | 5.12e-34 | 122 |
| MS.gene59112.t1 | MTR_2g027100 | 42.282 | 149 | 83 | 2 | 6 | 152 | 5 | 152 | 1.50e-30 | 109 |
| MS.gene59112.t1 | MTR_2g027360 | 34.118 | 85 | 54 | 2 | 9 | 92 | 3 | 86 | 1.57e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59112.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene59112.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene59112.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
| MS.gene59112.t1 | AT2G01540 | 60.355 | 169 | 64 | 2 | 1 | 167 | 1 | 168 | 6.51e-72 | 214 |
| MS.gene59112.t1 | AT1G70810 | 60.736 | 163 | 63 | 1 | 5 | 167 | 4 | 165 | 3.99e-70 | 209 |
| MS.gene59112.t1 | AT3G17980 | 56.364 | 165 | 71 | 1 | 3 | 167 | 14 | 177 | 1.63e-68 | 206 |
| MS.gene59112.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 7 | 169 | 5.11e-67 | 202 |
| MS.gene59112.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 7 | 169 | 5.11e-67 | 202 |
| MS.gene59112.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 38 | 200 | 6.33e-67 | 202 |
| MS.gene59112.t1 | AT1G73580 | 54.545 | 165 | 74 | 1 | 3 | 167 | 5 | 168 | 4.56e-66 | 199 |
| MS.gene59112.t1 | AT1G23140 | 56.707 | 164 | 70 | 1 | 4 | 167 | 3 | 165 | 4.28e-64 | 194 |
| MS.gene59112.t1 | AT1G70790 | 70.769 | 130 | 36 | 1 | 40 | 167 | 2 | 131 | 1.62e-63 | 192 |
| MS.gene59112.t1 | AT1G66360 | 53.374 | 163 | 73 | 2 | 4 | 164 | 3 | 164 | 2.60e-62 | 190 |
| MS.gene59112.t1 | AT5G37740 | 51.497 | 167 | 77 | 2 | 4 | 167 | 3 | 168 | 5.02e-62 | 189 |
| MS.gene59112.t1 | AT1G70800 | 53.374 | 163 | 75 | 1 | 5 | 167 | 13 | 174 | 8.96e-61 | 186 |
| MS.gene59112.t1 | AT5G37740 | 48.295 | 176 | 79 | 2 | 4 | 167 | 3 | 178 | 2.47e-59 | 182 |
| MS.gene59112.t1 | AT1G48590 | 44.848 | 165 | 57 | 2 | 3 | 167 | 38 | 168 | 1.67e-46 | 150 |
| MS.gene59112.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 143 | 297 | 5.61e-39 | 134 |
| MS.gene59112.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene59112.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene59112.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene59112.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
| MS.gene59112.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 178 | 332 | 2.50e-38 | 134 |
| MS.gene59112.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 178 | 332 | 2.50e-38 | 134 |
| MS.gene59112.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene59112.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene59112.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene59112.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
| MS.gene59112.t1 | AT3G07940 | 42.208 | 154 | 87 | 2 | 5 | 157 | 227 | 379 | 3.71e-35 | 126 |
Find 40 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTTGCAAAGGTCTATT+AGG | 0.188697 | 1.4:-16038585 | MS.gene59112:CDS |
| CTGAAGAGAGCAGTTGTATT+TGG | 0.198293 | 1.4:-16038698 | MS.gene59112:CDS |
| TTTCTCCGTCGACGACAAAA+TGG | 0.198849 | 1.4:-16038835 | MS.gene59112:CDS |
| AAGAATTAACCCTTTCAATA+AGG | 0.243737 | 1.4:-16039209 | MS.gene59112:CDS |
| TCAATCTTAGAATCATTTCT+TGG | 0.308077 | 1.4:+16038658 | None:intergenic |
| ATTTGTACACATTGAGCATA+TGG | 0.352534 | 1.4:+16038789 | None:intergenic |
| AGAATTAACCCTTTCAATAA+GGG | 0.363219 | 1.4:-16039208 | MS.gene59112:CDS |
| ATTGAGTGGGTGGATGTTCC+AGG | 0.378200 | 1.4:-16038603 | MS.gene59112:CDS |
| GGCATGGATAATAATGTTCT+TGG | 0.394699 | 1.4:-16040391 | MS.gene59112:CDS |
| CTCTTGATTGCACAACCATT+TGG | 0.400401 | 1.4:+16038750 | None:intergenic |
| TCAAGAGGGTTCAAGCAAAT+AGG | 0.403301 | 1.4:-16038734 | MS.gene59112:CDS |
| TTCTCCGTCGACGACAAAAT+GGG | 0.428457 | 1.4:-16038834 | MS.gene59112:CDS |
| CTAAAACTTCGTATTAAAAG+AGG | 0.428755 | 1.4:-16040364 | MS.gene59112:CDS |
| TGTCAACATTGGTCATGAAC+AGG | 0.430334 | 1.4:-16040293 | MS.gene59112:intron |
| AAATGTTGAGAGTGGAGAAT+TGG | 0.430897 | 1.4:-16038634 | MS.gene59112:CDS |
| CCAATGTTGACAACAACATA+AGG | 0.434516 | 1.4:+16040304 | None:intergenic |
| CAGGTTGCAAAGGTCTATTA+GGG | 0.446108 | 1.4:-16038584 | MS.gene59112:CDS |
| CTCTTACATCCCTTATTGAA+AGG | 0.451223 | 1.4:+16039199 | None:intergenic |
| ATCTTAGAATCATTTCTTGG+AGG | 0.484585 | 1.4:+16038661 | None:intergenic |
| CCTAATAGACCTTTGCAACC+TGG | 0.491322 | 1.4:+16038585 | None:intergenic |
| TCTTACATCCCTTATTGAAA+GGG | 0.497303 | 1.4:+16039200 | None:intergenic |
| TGTAAGAGTTCCAATACGTC+TGG | 0.504818 | 1.4:-16039184 | MS.gene59112:intron |
| GTTAATTCTTCATTCCACTC+AGG | 0.513309 | 1.4:+16039222 | None:intergenic |
| AAGTTGGATACTCTTCCAAA+TGG | 0.514104 | 1.4:-16038765 | MS.gene59112:CDS |
| TTAATTCTTCATTCCACTCA+GGG | 0.514723 | 1.4:+16039223 | None:intergenic |
| CCTTATGTTGTTGTCAACAT+TGG | 0.522538 | 1.4:-16040304 | MS.gene59112:CDS |
| CAATGTTGACAACAACATAA+GGG | 0.538879 | 1.4:+16040305 | None:intergenic |
| AGATTGAGAAATGTTGAGAG+TGG | 0.545029 | 1.4:-16038642 | MS.gene59112:CDS |
| TGAGAGTGGAGAATTGGTTG+TGG | 0.553380 | 1.4:-16038628 | MS.gene59112:CDS |
| GTGGATGTTCCAGGTTGCAA+AGG | 0.560781 | 1.4:-16038594 | MS.gene59112:CDS |
| GACAACAACATAAGGGTCGC+TGG | 0.561798 | 1.4:+16040312 | None:intergenic |
| CAAATGGTTGTGCAATCAAG+AGG | 0.565429 | 1.4:-16038749 | MS.gene59112:CDS |
| TCAATGTGTACAAATGAAGT+TGG | 0.578075 | 1.4:-16038781 | MS.gene59112:CDS |
| AAAACAATTGCAACCCTGAG+TGG | 0.600340 | 1.4:-16039236 | MS.gene59112:CDS |
| AATTGGTTGTGGAAATTGAG+TGG | 0.610176 | 1.4:-16038617 | MS.gene59112:CDS |
| GGTTGTGGAAATTGAGTGGG+TGG | 0.614075 | 1.4:-16038613 | MS.gene59112:CDS |
| ATTGGTTGTGGAAATTGAGT+GGG | 0.621207 | 1.4:-16038616 | MS.gene59112:CDS |
| AAATGGTTGTGCAATCAAGA+GGG | 0.626231 | 1.4:-16038748 | MS.gene59112:CDS |
| TACAACTGCTCTCTTCAGCA+AGG | 0.655573 | 1.4:+16038703 | None:intergenic |
| AGGTTGCAAAGGTCTATTAG+GGG | 0.692342 | 1.4:-16038583 | MS.gene59112:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAGAAATTATTATTAATAA+CGG | - | chr1.4:16039941-16039960 | MS.gene59112:intron | 10.0% |
| !!! | AAAAAAAAAAAAATTTTACG+AGG | - | chr1.4:16039297-16039316 | MS.gene59112:intron | 10.0% |
| !!! | TTTTAAGTTAAAATCAATTA+CGG | - | chr1.4:16039562-16039581 | MS.gene59112:intron | 10.0% |
| !! | ACAATTCATATGTATAAAAA+AGG | + | chr1.4:16039372-16039391 | None:intergenic | 15.0% |
| !! | CAATTCATATGTATAAAAAA+GGG | + | chr1.4:16039371-16039390 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTAGACTC+AGG | + | chr1.4:16039290-16039309 | None:intergenic | 15.0% |
| !! | GTTATGCAAAATTATGTTAT+TGG | - | chr1.4:16038957-16038976 | MS.gene59112:intron | 20.0% |
| !! | TAAACTGAACAATAAATTTG+AGG | - | chr1.4:16039495-16039514 | MS.gene59112:intron | 20.0% |
| !!! | AATTCTTTTGACAAAATTAC+CGG | + | chr1.4:16038841-16038860 | None:intergenic | 20.0% |
| !!! | ATACTATGAATTGATTTTAC+AGG | - | chr1.4:16039218-16039237 | MS.gene59112:CDS | 20.0% |
| !!! | TGTGTTTTATAATTGAAGTT+TGG | - | chr1.4:16039391-16039410 | MS.gene59112:intron | 20.0% |
| ! | AAGAATTAACCCTTTCAATA+AGG | - | chr1.4:16039751-16039770 | MS.gene59112:intron | 25.0% |
| ! | AGAATTAACCCTTTCAATAA+GGG | - | chr1.4:16039752-16039771 | MS.gene59112:intron | 25.0% |
| ! | ATCTGTATTGAATTTACTCT+TGG | + | chr1.4:16039066-16039085 | None:intergenic | 25.0% |
| ! | CTAAAACTTCGTATTAAAAG+AGG | - | chr1.4:16038596-16038615 | MS.gene59112:CDS | 25.0% |
| ! | TCAATCTTAGAATCATTTCT+TGG | + | chr1.4:16040305-16040324 | None:intergenic | 25.0% |
| ! | TGGTTATGCAATAACAAAAA+TGG | - | chr1.4:16039446-16039465 | MS.gene59112:intron | 25.0% |
| !! | AATTTACAACCTTTCGTTTT+TGG | + | chr1.4:16039266-16039285 | None:intergenic | 25.0% |
| !! | ATCATTTTACAACCATTTTG+TGG | - | chr1.4:16039977-16039996 | MS.gene59112:intron | 25.0% |
| !! | ATTCTTTTGACAAAATTACC+GGG | + | chr1.4:16038840-16038859 | None:intergenic | 25.0% |
| !! | GTTTTATAATTGAAGTTTGG+TGG | - | chr1.4:16039394-16039413 | MS.gene59112:intron | 25.0% |
| !! | TTTGCAAATATCAAGAGTTT+TGG | + | chr1.4:16039330-16039349 | None:intergenic | 25.0% |
| AGAGAAAAATAGAGAAAGCA+AGG | + | chr1.4:16038699-16038718 | None:intergenic | 30.0% | |
| AGCAGTTGTATTTGGAAAAA+TGG | - | chr1.4:16040270-16040289 | MS.gene59112:intron | 30.0% | |
| AGTTACCATTTACAAAGCAA+AGG | + | chr1.4:16039036-16039055 | None:intergenic | 30.0% | |
| ATATCCAAAACCTTATGGTA+TGG | - | chr1.4:16039000-16039019 | MS.gene59112:intron | 30.0% | |
| ATCTTAGAATCATTTCTTGG+AGG | + | chr1.4:16040302-16040321 | None:intergenic | 30.0% | |
| ATTTGTACACATTGAGCATA+TGG | + | chr1.4:16040174-16040193 | None:intergenic | 30.0% | |
| CAATGTTGACAACAACATAA+GGG | + | chr1.4:16038658-16038677 | None:intergenic | 30.0% | |
| TAGGAATATCCAAAACCTTA+TGG | - | chr1.4:16038995-16039014 | MS.gene59112:intron | 30.0% | |
| TCAATGTGTACAAATGAAGT+TGG | - | chr1.4:16040179-16040198 | MS.gene59112:intron | 30.0% | |
| TCTTACATCCCTTATTGAAA+GGG | + | chr1.4:16039763-16039782 | None:intergenic | 30.0% | |
| TTAATTCTTCATTCCACTCA+GGG | + | chr1.4:16039740-16039759 | None:intergenic | 30.0% | |
| ! | AATCTGAAATCTCCACAAAA+TGG | + | chr1.4:16039992-16040011 | None:intergenic | 30.0% |
| ! | CTTTTCCTTTGCTTTGTAAA+TGG | - | chr1.4:16039028-16039047 | MS.gene59112:intron | 30.0% |
| ! | TTGGTGATATTGTTAAGAGT+AGG | - | chr1.4:16038976-16038995 | MS.gene59112:intron | 30.0% |
| ! | TTGTCATCACATATTCCTTT+TGG | - | chr1.4:16039099-16039118 | MS.gene59112:intron | 30.0% |
| !! | CATTTTAGTCACCATTTTGA+GGG | - | chr1.4:16039184-16039203 | MS.gene59112:intron | 30.0% |
| !! | GCTTTCTCTATTTTTCTCTA+AGG | - | chr1.4:16038700-16038719 | MS.gene59112:CDS | 30.0% |
| !! | TCATTTTAGTCACCATTTTG+AGG | - | chr1.4:16039183-16039202 | MS.gene59112:intron | 30.0% |
| !! | TTGATTTTAGTCCCTCAAAA+TGG | + | chr1.4:16039198-16039217 | None:intergenic | 30.0% |
| AAAAGCTGAACCATACCATA+AGG | + | chr1.4:16039013-16039032 | None:intergenic | 35.0% | |
| AAATGGTTGTGCAATCAAGA+GGG | - | chr1.4:16040212-16040231 | MS.gene59112:intron | 35.0% | |
| AAATGTTGAGAGTGGAGAAT+TGG | - | chr1.4:16040326-16040345 | MS.gene59112:CDS | 35.0% | |
| AAGTTGGATACTCTTCCAAA+TGG | - | chr1.4:16040195-16040214 | MS.gene59112:intron | 35.0% | |
| AATTGGTTGTGGAAATTGAG+TGG | - | chr1.4:16040343-16040362 | MS.gene59112:CDS | 35.0% | |
| AGATTGAGAAATGTTGAGAG+TGG | - | chr1.4:16040318-16040337 | MS.gene59112:CDS | 35.0% | |
| ATTGGTTGTGGAAATTGAGT+GGG | - | chr1.4:16040344-16040363 | MS.gene59112:CDS | 35.0% | |
| CCAATGTTGACAACAACATA+AGG | + | chr1.4:16038659-16038678 | None:intergenic | 35.0% | |
| CCTTATGTTGTTGTCAACAT+TGG | - | chr1.4:16038656-16038675 | MS.gene59112:CDS | 35.0% | |
| CTCTTACATCCCTTATTGAA+AGG | + | chr1.4:16039764-16039783 | None:intergenic | 35.0% | |
| GAACAAAGACCAAAAACGAA+AGG | - | chr1.4:16039254-16039273 | MS.gene59112:CDS | 35.0% | |
| GTAATGCATGCTAAGTTAGA+TGG | + | chr1.4:16039817-16039836 | None:intergenic | 35.0% | |
| GTTAATTCTTCATTCCACTC+AGG | + | chr1.4:16039741-16039760 | None:intergenic | 35.0% | |
| TAATGGTTCGTATGTGTGTT+TGG | - | chr1.4:16039426-16039445 | MS.gene59112:intron | 35.0% | |
| TCATGATTCCGTCAAAATCA+CGG | - | chr1.4:16038894-16038913 | MS.gene59112:intron | 35.0% | |
| ! | GTTTTACTTACCAGACGTAT+TGG | + | chr1.4:16039789-16039808 | None:intergenic | 35.0% |
| ! | TGAACCATACCATAAGGTTT+TGG | + | chr1.4:16039007-16039026 | None:intergenic | 35.0% |
| !! | CACATATTCCTTTTGGTCTT+TGG | - | chr1.4:16039106-16039125 | MS.gene59112:intron | 35.0% |
| !! | TTTTTGTTTCTTTCCGCAGA+CGG | - | chr1.4:16040086-16040105 | MS.gene59112:intron | 35.0% |
| AAAACAATTGCAACCCTGAG+TGG | - | chr1.4:16039724-16039743 | MS.gene59112:intron | 40.0% | |
| AGGTTGCAAAGGTCTATTAG+GGG | - | chr1.4:16040377-16040396 | MS.gene59112:CDS | 40.0% | |
| ATGATTCCGTCAAAATCACG+GGG | - | chr1.4:16038896-16038915 | MS.gene59112:intron | 40.0% | |
| CAAATGGTTGTGCAATCAAG+AGG | - | chr1.4:16040211-16040230 | MS.gene59112:intron | 40.0% | |
| CAGGTTGCAAAGGTCTATTA+GGG | - | chr1.4:16040376-16040395 | MS.gene59112:CDS | 40.0% | |
| CATGATTCCGTCAAAATCAC+GGG | - | chr1.4:16038895-16038914 | MS.gene59112:intron | 40.0% | |
| CTCTTGATTGCACAACCATT+TGG | + | chr1.4:16040213-16040232 | None:intergenic | 40.0% | |
| CTGAAGAGAGCAGTTGTATT+TGG | - | chr1.4:16040262-16040281 | MS.gene59112:intron | 40.0% | |
| TCAAGAGGGTTCAAGCAAAT+AGG | - | chr1.4:16040226-16040245 | MS.gene59112:intron | 40.0% | |
| TCTTTGTCAAAAACCGTCTG+CGG | + | chr1.4:16040102-16040121 | None:intergenic | 40.0% | |
| TGTAAGAGTTCCAATACGTC+TGG | - | chr1.4:16039776-16039795 | MS.gene59112:intron | 40.0% | |
| TGTCAACATTGGTCATGAAC+AGG | - | chr1.4:16038667-16038686 | MS.gene59112:CDS | 40.0% | |
| ! | CAAAAACCCCGTGATTTTGA+CGG | + | chr1.4:16038905-16038924 | None:intergenic | 40.0% |
| ! | TTTGGTGGCAACACACATAA+TGG | - | chr1.4:16039409-16039428 | MS.gene59112:intron | 40.0% |
| ACAGAACGCCAAAGACCAAA+AGG | + | chr1.4:16039117-16039136 | None:intergenic | 45.0% | |
| CCAGGTTGCAAAGGTCTATT+AGG | - | chr1.4:16040375-16040394 | MS.gene59112:CDS | 45.0% | |
| CCTAATAGACCTTTGCAACC+TGG | + | chr1.4:16040378-16040397 | None:intergenic | 45.0% | |
| TACAACTGCTCTCTTCAGCA+AGG | + | chr1.4:16040260-16040279 | None:intergenic | 45.0% | |
| TGAGAGTGGAGAATTGGTTG+TGG | - | chr1.4:16040332-16040351 | MS.gene59112:CDS | 45.0% | |
| TTCTCCGTCGACGACAAAAT+GGG | - | chr1.4:16040126-16040145 | MS.gene59112:intron | 45.0% | |
| TTTCTCCGTCGACGACAAAA+TGG | - | chr1.4:16040125-16040144 | MS.gene59112:intron | 45.0% | |
| ! | ATCACCCATTTTGTCGTCGA+CGG | + | chr1.4:16040133-16040152 | None:intergenic | 45.0% |
| ATTGAGTGGGTGGATGTTCC+AGG | - | chr1.4:16040357-16040376 | MS.gene59112:CDS | 50.0% | |
| GACAACAACATAAGGGTCGC+TGG | + | chr1.4:16038651-16038670 | None:intergenic | 50.0% | |
| GGTTGTGGAAATTGAGTGGG+TGG | - | chr1.4:16040347-16040366 | MS.gene59112:CDS | 50.0% | |
| GTGGATGTTCCAGGTTGCAA+AGG | - | chr1.4:16040366-16040385 | MS.gene59112:CDS | 50.0% | |
| TTGCAGAATCATCGTGTGCC+CGG | - | chr1.4:16038819-16038838 | MS.gene59112:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 16038572 | 16040410 | 16038572 | ID=MS.gene59112 |
| chr1.4 | mRNA | 16038572 | 16040410 | 16038572 | ID=MS.gene59112.t1;Parent=MS.gene59112 |
| chr1.4 | exon | 16040294 | 16040410 | 16040294 | ID=MS.gene59112.t1.exon1;Parent=MS.gene59112.t1 |
| chr1.4 | CDS | 16040294 | 16040410 | 16040294 | ID=cds.MS.gene59112.t1;Parent=MS.gene59112.t1 |
| chr1.4 | exon | 16039185 | 16039280 | 16039185 | ID=MS.gene59112.t1.exon2;Parent=MS.gene59112.t1 |
| chr1.4 | CDS | 16039185 | 16039280 | 16039185 | ID=cds.MS.gene59112.t1;Parent=MS.gene59112.t1 |
| chr1.4 | exon | 16038572 | 16038877 | 16038572 | ID=MS.gene59112.t1.exon3;Parent=MS.gene59112.t1 |
| chr1.4 | CDS | 16038572 | 16038877 | 16038572 | ID=cds.MS.gene59112.t1;Parent=MS.gene59112.t1 |
| Gene Sequence |
| Protein sequence |
