Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83105.t1 | XP_003589656.1 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 1.20E-90 | 342.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83105.t1 | Q9S7J9 | 66.9 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 1.5e-62 | 240.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83105.t1 | G7I9Z6 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 8.6e-91 | 342.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055701 | MS.gene83105 | 0.847559 | 1.07E-59 | -1.69E-46 |
MS.gene058503 | MS.gene83105 | 0.807017 | 6.21E-50 | -1.69E-46 |
MS.gene059609 | MS.gene83105 | 0.815383 | 9.51E-52 | -1.69E-46 |
MS.gene060802 | MS.gene83105 | 0.816001 | 6.93E-52 | -1.69E-46 |
MS.gene060850 | MS.gene83105 | 0.800158 | 1.64E-48 | -1.69E-46 |
MS.gene060851 | MS.gene83105 | 0.806995 | 6.27E-50 | -1.69E-46 |
MS.gene060852 | MS.gene83105 | 0.804264 | 2.35E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene048263 | MS.gene83105 | PPI |
MS.gene83105 | MS.gene02897 | PPI |
MS.gene003140 | MS.gene83105 | PPI |
MS.gene59112 | MS.gene83105 | PPI |
MS.gene026566 | MS.gene83105 | PPI |
MS.gene01947 | MS.gene83105 | PPI |
MS.gene62964 | MS.gene83105 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83105.t1 | MTR_1g031650 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 6.80e-121 | 338 |
MS.gene83105.t1 | MTR_1g031650 | 96.269 | 134 | 5 | 0 | 39 | 172 | 2 | 135 | 5.49e-92 | 264 |
MS.gene83105.t1 | MTR_4g084280 | 65.644 | 163 | 55 | 1 | 4 | 166 | 3 | 164 | 4.75e-76 | 225 |
MS.gene83105.t1 | MTR_3g067585 | 62.346 | 162 | 60 | 1 | 4 | 165 | 3 | 163 | 9.08e-74 | 219 |
MS.gene83105.t1 | MTR_2g011590 | 58.537 | 164 | 67 | 1 | 4 | 167 | 2 | 164 | 5.65e-70 | 209 |
MS.gene83105.t1 | MTR_8g107340 | 58.537 | 164 | 67 | 1 | 4 | 167 | 19 | 181 | 1.31e-69 | 209 |
MS.gene83105.t1 | MTR_6g069470 | 55.488 | 164 | 72 | 1 | 4 | 167 | 15 | 177 | 1.23e-64 | 196 |
MS.gene83105.t1 | MTR_8g088320 | 44.937 | 158 | 85 | 2 | 5 | 161 | 164 | 320 | 1.74e-37 | 131 |
MS.gene83105.t1 | MTR_8g038400 | 42.949 | 156 | 87 | 2 | 5 | 159 | 209 | 363 | 3.39e-37 | 131 |
MS.gene83105.t1 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 5 | 159 | 212 | 366 | 1.63e-34 | 124 |
MS.gene83105.t1 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 5 | 159 | 242 | 396 | 3.80e-34 | 124 |
MS.gene83105.t1 | MTR_2g030230 | 42.405 | 158 | 89 | 2 | 5 | 161 | 171 | 327 | 5.12e-34 | 122 |
MS.gene83105.t1 | MTR_2g027100 | 42.282 | 149 | 83 | 2 | 6 | 152 | 5 | 152 | 1.50e-30 | 109 |
MS.gene83105.t1 | MTR_2g027360 | 34.118 | 85 | 54 | 2 | 9 | 92 | 3 | 86 | 1.57e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83105.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
MS.gene83105.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
MS.gene83105.t1 | AT1G70790 | 66.864 | 169 | 53 | 2 | 1 | 167 | 1 | 168 | 2.40e-80 | 236 |
MS.gene83105.t1 | AT2G01540 | 60.355 | 169 | 64 | 2 | 1 | 167 | 1 | 168 | 6.51e-72 | 214 |
MS.gene83105.t1 | AT1G70810 | 60.736 | 163 | 63 | 1 | 5 | 167 | 4 | 165 | 3.99e-70 | 209 |
MS.gene83105.t1 | AT3G17980 | 56.364 | 165 | 71 | 1 | 3 | 167 | 14 | 177 | 1.63e-68 | 206 |
MS.gene83105.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 7 | 169 | 5.11e-67 | 202 |
MS.gene83105.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 7 | 169 | 5.11e-67 | 202 |
MS.gene83105.t1 | AT1G48590 | 56.970 | 165 | 69 | 2 | 3 | 167 | 38 | 200 | 6.33e-67 | 202 |
MS.gene83105.t1 | AT1G73580 | 54.545 | 165 | 74 | 1 | 3 | 167 | 5 | 168 | 4.56e-66 | 199 |
MS.gene83105.t1 | AT1G23140 | 56.707 | 164 | 70 | 1 | 4 | 167 | 3 | 165 | 4.28e-64 | 194 |
MS.gene83105.t1 | AT1G70790 | 70.769 | 130 | 36 | 1 | 40 | 167 | 2 | 131 | 1.62e-63 | 192 |
MS.gene83105.t1 | AT1G66360 | 53.374 | 163 | 73 | 2 | 4 | 164 | 3 | 164 | 2.60e-62 | 190 |
MS.gene83105.t1 | AT5G37740 | 51.497 | 167 | 77 | 2 | 4 | 167 | 3 | 168 | 5.02e-62 | 189 |
MS.gene83105.t1 | AT1G70800 | 53.374 | 163 | 75 | 1 | 5 | 167 | 13 | 174 | 8.96e-61 | 186 |
MS.gene83105.t1 | AT5G37740 | 48.295 | 176 | 79 | 2 | 4 | 167 | 3 | 178 | 2.47e-59 | 182 |
MS.gene83105.t1 | AT1G48590 | 44.848 | 165 | 57 | 2 | 3 | 167 | 38 | 168 | 1.67e-46 | 150 |
MS.gene83105.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 143 | 297 | 5.61e-39 | 134 |
MS.gene83105.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
MS.gene83105.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
MS.gene83105.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
MS.gene83105.t1 | AT4G21160 | 48.077 | 156 | 79 | 2 | 5 | 159 | 179 | 333 | 1.78e-38 | 134 |
MS.gene83105.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 178 | 332 | 2.50e-38 | 134 |
MS.gene83105.t1 | AT4G05330 | 47.436 | 156 | 80 | 2 | 5 | 159 | 178 | 332 | 2.50e-38 | 134 |
MS.gene83105.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
MS.gene83105.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
MS.gene83105.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
MS.gene83105.t1 | AT5G47710 | 40.625 | 160 | 92 | 2 | 6 | 163 | 5 | 163 | 3.28e-35 | 121 |
MS.gene83105.t1 | AT3G07940 | 42.208 | 154 | 87 | 2 | 5 | 157 | 227 | 379 | 3.71e-35 | 126 |
Find 39 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGGTTGCAAAGGTCTATT+AGG | 0.188697 | 1.2:-16535196 | MS.gene83105:CDS |
CTGAAGAGAGCAGTTGTATT+TGG | 0.198293 | 1.2:-16535309 | MS.gene83105:CDS |
TTTCTCCGTCGACGACAAAA+TGG | 0.198849 | 1.2:-16535446 | MS.gene83105:CDS |
AAGAATTAACCCTTTCAATA+AGG | 0.243737 | 1.2:-16535735 | MS.gene83105:CDS |
TCAATCTTAGAATCATTTCT+TGG | 0.308077 | 1.2:+16535269 | None:intergenic |
ATTTGTACACATTGAGCATA+TGG | 0.352534 | 1.2:+16535400 | None:intergenic |
AGAATTAACCCTTTCAATAA+GGG | 0.363219 | 1.2:-16535734 | MS.gene83105:CDS |
CAAATGGTTGTGCAATCAAA+AGG | 0.374974 | 1.2:-16535360 | MS.gene83105:CDS |
ATTGAGTGGGTGGATGTTCC+AGG | 0.378200 | 1.2:-16535214 | MS.gene83105:CDS |
TCAAAAGGGTTCAAGCAAAT+AGG | 0.382577 | 1.2:-16535345 | MS.gene83105:CDS |
GGCATGGATAATAATGTTCT+TGG | 0.394699 | 1.2:-16536920 | MS.gene83105:CDS |
TTCTCCGTCGACGACAAAAT+GGG | 0.428457 | 1.2:-16535445 | MS.gene83105:CDS |
CTAAAACTTCGTATTAAAAG+AGG | 0.428755 | 1.2:-16536893 | MS.gene83105:CDS |
TGTCAACATTGGTCATGAAC+AGG | 0.430334 | 1.2:-16536822 | MS.gene83105:intron |
AAATGTTGAGAGTGGAGAAT+TGG | 0.430897 | 1.2:-16535245 | MS.gene83105:CDS |
CCAATGTTGACAACAACATA+AGG | 0.434516 | 1.2:+16536833 | None:intergenic |
CAGGTTGCAAAGGTCTATTA+GGG | 0.446108 | 1.2:-16535195 | MS.gene83105:CDS |
CTCTTACATCCCTTATTGAA+AGG | 0.451223 | 1.2:+16535725 | None:intergenic |
ATCTTAGAATCATTTCTTGG+AGG | 0.484585 | 1.2:+16535272 | None:intergenic |
CCTAATAGACCTTTGCAACC+TGG | 0.491322 | 1.2:+16535196 | None:intergenic |
TCTTACATCCCTTATTGAAA+GGG | 0.497303 | 1.2:+16535726 | None:intergenic |
TGTAAGAGTTCCAATACGTC+TGG | 0.504818 | 1.2:-16535710 | MS.gene83105:intron |
GTTAATTCTTCATTCCACTC+AGG | 0.513309 | 1.2:+16535748 | None:intergenic |
AAGTTGGATACTCTTCCAAA+TGG | 0.514104 | 1.2:-16535376 | MS.gene83105:CDS |
TTAATTCTTCATTCCACTCA+GGG | 0.514723 | 1.2:+16535749 | None:intergenic |
CCTTATGTTGTTGTCAACAT+TGG | 0.522538 | 1.2:-16536833 | MS.gene83105:CDS |
AAATGGTTGTGCAATCAAAA+GGG | 0.538475 | 1.2:-16535359 | MS.gene83105:CDS |
CAATGTTGACAACAACATAA+GGG | 0.538879 | 1.2:+16536834 | None:intergenic |
AGATTGAGAAATGTTGAGAG+TGG | 0.545029 | 1.2:-16535253 | MS.gene83105:CDS |
TGAGAGTGGAGAATTGGTTG+TGG | 0.553380 | 1.2:-16535239 | MS.gene83105:CDS |
GTGGATGTTCCAGGTTGCAA+AGG | 0.560781 | 1.2:-16535205 | MS.gene83105:CDS |
GACAACAACATAAGGGTCGC+TGG | 0.561798 | 1.2:+16536841 | None:intergenic |
TCAATGTGTACAAATGAAGT+TGG | 0.578075 | 1.2:-16535392 | MS.gene83105:CDS |
AAAACAATTGCAACCCTGAG+TGG | 0.600340 | 1.2:-16535762 | MS.gene83105:CDS |
AATTGGTTGTGGAAATTGAG+TGG | 0.610176 | 1.2:-16535228 | MS.gene83105:CDS |
GGTTGTGGAAATTGAGTGGG+TGG | 0.614075 | 1.2:-16535224 | MS.gene83105:CDS |
ATTGGTTGTGGAAATTGAGT+GGG | 0.621207 | 1.2:-16535227 | MS.gene83105:CDS |
TACAACTGCTCTCTTCAGCA+AGG | 0.655573 | 1.2:+16535314 | None:intergenic |
AGGTTGCAAAGGTCTATTAG+GGG | 0.692342 | 1.2:-16535194 | MS.gene83105:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAAGTTAAAATCAATTA+CGG | - | chr1.2:16536176-16536195 | MS.gene83105:intron | 10.0% |
!! | ACAATTCATATGTATAAAAA+AGG | + | chr1.2:16535986-16536005 | None:intergenic | 15.0% |
!! | CAATTCATATGTATAAAAAA+GGG | + | chr1.2:16535985-16536004 | None:intergenic | 15.0% |
!!! | AACAAAAAATTATTTTTACG+AGG | - | chr1.2:16535911-16535930 | MS.gene83105:intron | 15.0% |
!! | GTTATGCAAAATTATGTTAT+TGG | - | chr1.2:16535569-16535588 | MS.gene83105:intron | 20.0% |
!! | TAAACTGAACAATAAATTTG+AGG | - | chr1.2:16536109-16536128 | MS.gene83105:intron | 20.0% |
!! | TCATCAACAAATAAGTTAAT+TGG | + | chr1.2:16536588-16536607 | None:intergenic | 20.0% |
!!! | AATAACTAAATGCATTTTGT+GGG | - | chr1.2:16536511-16536530 | MS.gene83105:intron | 20.0% |
!!! | AATTCTTTTGACAAAATTAC+CGG | + | chr1.2:16535452-16535471 | None:intergenic | 20.0% |
!!! | AATTTTTTGTTTTTAGACTC+AGG | + | chr1.2:16535902-16535921 | None:intergenic | 20.0% |
!!! | ATACTATGAATTGATTTTAC+AGG | - | chr1.2:16535830-16535849 | MS.gene83105:intron | 20.0% |
!!! | TGTGTTTTATAATTGAAGTT+TGG | - | chr1.2:16536005-16536024 | MS.gene83105:intron | 20.0% |
! | AAGAATTAACCCTTTCAATA+AGG | - | chr1.2:16536365-16536384 | MS.gene83105:intron | 25.0% |
! | AGAATTAACCCTTTCAATAA+GGG | - | chr1.2:16536366-16536385 | MS.gene83105:intron | 25.0% |
! | ATCTGTATTGAATTTACTCT+TGG | + | chr1.2:16535678-16535697 | None:intergenic | 25.0% |
! | CTAAAACTTCGTATTAAAAG+AGG | - | chr1.2:16535207-16535226 | MS.gene83105:CDS | 25.0% |
! | TCAATCTTAGAATCATTTCT+TGG | + | chr1.2:16536834-16536853 | None:intergenic | 25.0% |
! | TGGTTATGCAATAACAAAAA+TGG | - | chr1.2:16536060-16536079 | MS.gene83105:intron | 25.0% |
!! | AATTTACAACCTTTCGTTTT+TGG | + | chr1.2:16535878-16535897 | None:intergenic | 25.0% |
!! | ATTCTTTTGACAAAATTACC+GGG | + | chr1.2:16535451-16535470 | None:intergenic | 25.0% |
!! | CAATAACTAAATGCATTTTG+TGG | - | chr1.2:16536510-16536529 | MS.gene83105:intron | 25.0% |
!! | GTTTTATAATTGAAGTTTGG+TGG | - | chr1.2:16536008-16536027 | MS.gene83105:intron | 25.0% |
!! | TTTGCAAATATCAAGAGTTT+TGG | + | chr1.2:16535944-16535963 | None:intergenic | 25.0% |
AAATGGTTGTGCAATCAAAA+GGG | - | chr1.2:16536741-16536760 | MS.gene83105:intron | 30.0% | |
ACTTGACTCTGTAACTTTAA+AGG | + | chr1.2:16536552-16536571 | None:intergenic | 30.0% | |
AGAGAAAAATAGAGAAAGCA+AGG | + | chr1.2:16535310-16535329 | None:intergenic | 30.0% | |
AGCAGTTGTATTTGGAAAAA+TGG | - | chr1.2:16536799-16536818 | MS.gene83105:intron | 30.0% | |
AGTTACCATTTACAAAGCAA+AGG | + | chr1.2:16535648-16535667 | None:intergenic | 30.0% | |
ATATCCAAAACCTTATGGTA+TGG | - | chr1.2:16535612-16535631 | MS.gene83105:intron | 30.0% | |
ATCTTAGAATCATTTCTTGG+AGG | + | chr1.2:16536831-16536850 | None:intergenic | 30.0% | |
ATTTGTACACATTGAGCATA+TGG | + | chr1.2:16536703-16536722 | None:intergenic | 30.0% | |
CAATGTTGACAACAACATAA+GGG | + | chr1.2:16535269-16535288 | None:intergenic | 30.0% | |
TAGGAATATCCAAAACCTTA+TGG | - | chr1.2:16535607-16535626 | MS.gene83105:intron | 30.0% | |
TCAATGTGTACAAATGAAGT+TGG | - | chr1.2:16536708-16536727 | MS.gene83105:intron | 30.0% | |
TCTTACATCCCTTATTGAAA+GGG | + | chr1.2:16536377-16536396 | None:intergenic | 30.0% | |
TTAATTCTTCATTCCACTCA+GGG | + | chr1.2:16536354-16536373 | None:intergenic | 30.0% | |
! | CTTTTCCTTTGCTTTGTAAA+TGG | - | chr1.2:16535640-16535659 | MS.gene83105:intron | 30.0% |
! | TTGGTGATATTGTTAAGAGT+AGG | - | chr1.2:16535588-16535607 | MS.gene83105:intron | 30.0% |
! | TTGTCATCACATATTCCTTT+TGG | - | chr1.2:16535711-16535730 | MS.gene83105:CDS | 30.0% |
!! | CATTTTAGTCACCATTTTGA+GGG | - | chr1.2:16535796-16535815 | MS.gene83105:intron | 30.0% |
!! | GCTTTCTCTATTTTTCTCTA+AGG | - | chr1.2:16535311-16535330 | MS.gene83105:CDS | 30.0% |
!! | TCATTTTAGTCACCATTTTG+AGG | - | chr1.2:16535795-16535814 | MS.gene83105:intron | 30.0% |
!! | TTGATTTTAGTCCCTCAAAA+TGG | + | chr1.2:16535810-16535829 | None:intergenic | 30.0% |
AAAACTAGCTCCATCTAACT+TGG | - | chr1.2:16536418-16536437 | MS.gene83105:intron | 35.0% | |
AAAAGCTGAACCATACCATA+AGG | + | chr1.2:16535625-16535644 | None:intergenic | 35.0% | |
AAATGTTGAGAGTGGAGAAT+TGG | - | chr1.2:16536855-16536874 | MS.gene83105:CDS | 35.0% | |
AAGTTGGATACTCTTCCAAA+TGG | - | chr1.2:16536724-16536743 | MS.gene83105:intron | 35.0% | |
AATTGGTTGTGGAAATTGAG+TGG | - | chr1.2:16536872-16536891 | MS.gene83105:CDS | 35.0% | |
AGATTGAGAAATGTTGAGAG+TGG | - | chr1.2:16536847-16536866 | MS.gene83105:CDS | 35.0% | |
ATTGGTTGTGGAAATTGAGT+GGG | - | chr1.2:16536873-16536892 | MS.gene83105:CDS | 35.0% | |
CAAATGGTTGTGCAATCAAA+AGG | - | chr1.2:16536740-16536759 | MS.gene83105:intron | 35.0% | |
CCAATGTTGACAACAACATA+AGG | + | chr1.2:16535270-16535289 | None:intergenic | 35.0% | |
CCTTATGTTGTTGTCAACAT+TGG | - | chr1.2:16535267-16535286 | MS.gene83105:CDS | 35.0% | |
CTCTTACATCCCTTATTGAA+AGG | + | chr1.2:16536378-16536397 | None:intergenic | 35.0% | |
GAACAAAGACCAAAAACGAA+AGG | - | chr1.2:16535866-16535885 | MS.gene83105:intron | 35.0% | |
GTTAATTCTTCATTCCACTC+AGG | + | chr1.2:16536355-16536374 | None:intergenic | 35.0% | |
TAATGGTTCGTATGTGTGTT+TGG | - | chr1.2:16536040-16536059 | MS.gene83105:intron | 35.0% | |
TCAAAAGGGTTCAAGCAAAT+AGG | - | chr1.2:16536755-16536774 | MS.gene83105:intron | 35.0% | |
TCATGATTCCGTCAAAATCA+CGG | - | chr1.2:16535506-16535525 | MS.gene83105:intron | 35.0% | |
! | TGAACCATACCATAAGGTTT+TGG | + | chr1.2:16535619-16535638 | None:intergenic | 35.0% |
!! | CACATATTCCTTTTGGTCTT+TGG | - | chr1.2:16535718-16535737 | MS.gene83105:CDS | 35.0% |
!! | CTTTTGATTGCACAACCATT+TGG | + | chr1.2:16536742-16536761 | None:intergenic | 35.0% |
!! | TTTTTGTTTCTCTTCGCAGA+CGG | - | chr1.2:16536615-16536634 | MS.gene83105:intron | 35.0% |
AAAACAATTGCAACCCTGAG+TGG | - | chr1.2:16536338-16536357 | MS.gene83105:intron | 40.0% | |
AGGTTGCAAAGGTCTATTAG+GGG | - | chr1.2:16536906-16536925 | MS.gene83105:CDS | 40.0% | |
ATGATTCCGTCAAAATCACG+GGG | - | chr1.2:16535508-16535527 | MS.gene83105:intron | 40.0% | |
CAGGTTGCAAAGGTCTATTA+GGG | - | chr1.2:16536905-16536924 | MS.gene83105:CDS | 40.0% | |
CATGATTCCGTCAAAATCAC+GGG | - | chr1.2:16535507-16535526 | MS.gene83105:intron | 40.0% | |
CTGAAGAGAGCAGTTGTATT+TGG | - | chr1.2:16536791-16536810 | MS.gene83105:intron | 40.0% | |
GTAATGCATGCCAAGTTAGA+TGG | + | chr1.2:16536431-16536450 | None:intergenic | 40.0% | |
TGTAAGAGTTCCAATACGTC+TGG | - | chr1.2:16536390-16536409 | MS.gene83105:intron | 40.0% | |
TGTCAACATTGGTCATGAAC+AGG | - | chr1.2:16535278-16535297 | MS.gene83105:CDS | 40.0% | |
! | CAAAAACCCCGTGATTTTGA+CGG | + | chr1.2:16535517-16535536 | None:intergenic | 40.0% |
! | GTTTTGCTTACCAGACGTAT+TGG | + | chr1.2:16536403-16536422 | None:intergenic | 40.0% |
! | TTTGGTGGCAACACACATAA+TGG | - | chr1.2:16536023-16536042 | MS.gene83105:intron | 40.0% |
ACAGAACGCCAAAGACCAAA+AGG | + | chr1.2:16535729-16535748 | None:intergenic | 45.0% | |
CCAGGTTGCAAAGGTCTATT+AGG | - | chr1.2:16536904-16536923 | MS.gene83105:CDS | 45.0% | |
CCTAATAGACCTTTGCAACC+TGG | + | chr1.2:16536907-16536926 | None:intergenic | 45.0% | |
TACAACTGCTCTCTTCAGCA+AGG | + | chr1.2:16536789-16536808 | None:intergenic | 45.0% | |
TGAGAGTGGAGAATTGGTTG+TGG | - | chr1.2:16536861-16536880 | MS.gene83105:CDS | 45.0% | |
TTCTCCGTCGACGACAAAAT+GGG | - | chr1.2:16536655-16536674 | MS.gene83105:intron | 45.0% | |
TTTCTCCGTCGACGACAAAA+TGG | - | chr1.2:16536654-16536673 | MS.gene83105:intron | 45.0% | |
! | ATCACCCATTTTGTCGTCGA+CGG | + | chr1.2:16536662-16536681 | None:intergenic | 45.0% |
ATTGAGTGGGTGGATGTTCC+AGG | - | chr1.2:16536886-16536905 | MS.gene83105:CDS | 50.0% | |
GACAACAACATAAGGGTCGC+TGG | + | chr1.2:16535262-16535281 | None:intergenic | 50.0% | |
GGTTGTGGAAATTGAGTGGG+TGG | - | chr1.2:16536876-16536895 | MS.gene83105:CDS | 50.0% | |
GTGGATGTTCCAGGTTGCAA+AGG | - | chr1.2:16536895-16536914 | MS.gene83105:CDS | 50.0% | |
TTGCAGAATCATCGTGTGCC+CGG | - | chr1.2:16535430-16535449 | MS.gene83105:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 16535183 | 16536939 | 16535183 | ID=MS.gene83105 |
chr1.2 | mRNA | 16535183 | 16536939 | 16535183 | ID=MS.gene83105.t1;Parent=MS.gene83105 |
chr1.2 | exon | 16536823 | 16536939 | 16536823 | ID=MS.gene83105.t1.exon1;Parent=MS.gene83105.t1 |
chr1.2 | CDS | 16536823 | 16536939 | 16536823 | ID=cds.MS.gene83105.t1;Parent=MS.gene83105.t1 |
chr1.2 | exon | 16535711 | 16535806 | 16535711 | ID=MS.gene83105.t1.exon2;Parent=MS.gene83105.t1 |
chr1.2 | CDS | 16535711 | 16535806 | 16535711 | ID=cds.MS.gene83105.t1;Parent=MS.gene83105.t1 |
chr1.2 | exon | 16535183 | 16535488 | 16535183 | ID=MS.gene83105.t1.exon3;Parent=MS.gene83105.t1 |
chr1.2 | CDS | 16535183 | 16535488 | 16535183 | ID=cds.MS.gene83105.t1;Parent=MS.gene83105.t1 |
Gene Sequence |
Protein sequence |