Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026734.t1 | XP_003604349.1 | 99.3 | 290 | 2 | 0 | 1 | 290 | 1 | 290 | 4.40E-162 | 580.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026734.t1 | Q9LVC8 | 73.8 | 290 | 74 | 2 | 1 | 290 | 1 | 288 | 2.7e-120 | 433.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026734.t1 | B7FL93 | 99.3 | 290 | 2 | 0 | 1 | 290 | 1 | 290 | 3.2e-162 | 580.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026734 | MS.gene44339 | PPI |
| MS.gene026734 | MS.gene53448 | PPI |
| MS.gene026734 | MS.gene027672 | PPI |
| MS.gene026734 | MS.gene80725 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026734.t1 | MTR_4g009880 | 99.310 | 290 | 2 | 0 | 1 | 290 | 1 | 290 | 0.0 | 595 |
| MS.gene026734.t1 | MTR_5g033700 | 28.205 | 234 | 149 | 4 | 49 | 282 | 41 | 255 | 4.36e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026734.t1 | AT5G57300 | 73.793 | 290 | 74 | 2 | 1 | 290 | 1 | 288 | 4.87e-159 | 444 |
| MS.gene026734.t1 | AT5G57300 | 73.793 | 290 | 74 | 2 | 1 | 290 | 1 | 288 | 4.87e-159 | 444 |
| MS.gene026734.t1 | AT5G57300 | 73.793 | 290 | 74 | 2 | 1 | 290 | 1 | 288 | 4.87e-159 | 444 |
| MS.gene026734.t1 | AT5G57300 | 73.793 | 290 | 74 | 2 | 1 | 290 | 1 | 288 | 4.87e-159 | 444 |
| MS.gene026734.t1 | AT1G23360 | 29.119 | 261 | 154 | 7 | 31 | 280 | 12 | 252 | 3.11e-22 | 93.6 |
Find 76 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATCAAATTCATGGCTT+TGG | 0.225191 | 4.1:+85857452 | None:intergenic |
| GGAGTGGTTGCCATTCATTC+AGG | 0.229705 | 4.1:+85860804 | MS.gene026734:CDS |
| GATTCTCATACTCTACTTTC+TGG | 0.257502 | 4.1:-85860773 | None:intergenic |
| CAGCATTATCTTCCACTTCC+AGG | 0.268263 | 4.1:+85857511 | MS.gene026734:CDS |
| CTTTGGGAATAGTCACTAAA+AGG | 0.297814 | 4.1:+85857469 | MS.gene026734:CDS |
| GATGGTTACACTATTGCATT+TGG | 0.299423 | 4.1:+85859089 | MS.gene026734:CDS |
| GAGAAGATGGTTCCCTTGTT+TGG | 0.306971 | 4.1:+85859021 | MS.gene026734:CDS |
| AAACAGCGGGCTGCCGAAAA+AGG | 0.316482 | 4.1:+85858882 | MS.gene026734:CDS |
| TTGCCAACATTCAACATGTT+TGG | 0.317102 | 4.1:-85858861 | None:intergenic |
| ACAATCAAATTCATGGCTTT+GGG | 0.326107 | 4.1:+85857453 | None:intergenic |
| TGCCAACATTCAACATGTTT+GGG | 0.340988 | 4.1:-85858860 | None:intergenic |
| ACTCACAGTTCTTTAAATAT+AGG | 0.345907 | 4.1:-85859325 | None:intergenic |
| CTTGATGTGGCTGGTGGCAC+AGG | 0.349838 | 4.1:+85858063 | MS.gene026734:CDS |
| CATTCTCACGCCACCAGTTT+CGG | 0.362182 | 4.1:+85857540 | MS.gene026734:CDS |
| GGAATAGTCACTAAAAGGTT+GGG | 0.368369 | 4.1:+85857474 | MS.gene026734:CDS |
| TGAATGTAACTAACCGAAAC+TGG | 0.369852 | 4.1:-85857553 | None:intergenic |
| ACACTATTGCATTTGGGATA+AGG | 0.370614 | 4.1:+85859096 | MS.gene026734:CDS |
| AGAAGATGGTTCCCTTGTTT+GGG | 0.370951 | 4.1:+85859022 | MS.gene026734:CDS |
| CGCATAGGAGAGATGGTTGC+TGG | 0.406834 | 4.1:+85859855 | MS.gene026734:CDS |
| GTAGAGTATGAGAATCTAGT+TGG | 0.412758 | 4.1:+85860780 | MS.gene026734:CDS |
| AGATGCTTCATTCCAGGAAA+AGG | 0.430797 | 4.1:-85858042 | None:intergenic |
| AGCACTCATTAAATCATTCA+TGG | 0.432256 | 4.1:-85857743 | None:intergenic |
| TTGATAGGTTATGGAGAAGA+TGG | 0.439292 | 4.1:+85859008 | MS.gene026734:intron |
| TAGAGTATGAGAATCTAGTT+GGG | 0.440717 | 4.1:+85860781 | MS.gene026734:CDS |
| AAGTTCTTAGTGAAGCTCAT+AGG | 0.441760 | 4.1:+85859138 | MS.gene026734:CDS |
| AACCATCCATTGAATCATCT+TGG | 0.445596 | 4.1:-85859073 | None:intergenic |
| ACATCAAGATGCTTCATTCC+AGG | 0.450303 | 4.1:-85858048 | None:intergenic |
| GGGAATAGTCACTAAAAGGT+TGG | 0.459998 | 4.1:+85857473 | MS.gene026734:CDS |
| ATGAATGATTTAATGAGTGC+TGG | 0.460373 | 4.1:+85857745 | MS.gene026734:CDS |
| GGTTCCCTTGTTTGGGTGGA+GGG | 0.465219 | 4.1:+85859029 | MS.gene026734:CDS |
| AGTACTTAGTTGAGAGTATC+CGG | 0.465510 | 4.1:+85859895 | MS.gene026734:CDS |
| GACTAACATGGCTTAGTTCA+AGG | 0.468673 | 4.1:-85859300 | None:intergenic |
| ATGGTTACACTATTGCATTT+GGG | 0.470063 | 4.1:+85859090 | MS.gene026734:CDS |
| ACTCTCAACTAAGTACTGAT+AGG | 0.475235 | 4.1:-85859889 | None:intergenic |
| TGCATAGACTGTGGAAAGAA+AGG | 0.477937 | 4.1:+85857770 | MS.gene026734:CDS |
| GCATCAATGATTGCTGATGC+AGG | 0.479407 | 4.1:+85860747 | MS.gene026734:CDS |
| AGATGGTTCCCTTGTTTGGG+TGG | 0.486517 | 4.1:+85859025 | MS.gene026734:CDS |
| GAGTTTCCAAGATGATTCAA+TGG | 0.492872 | 4.1:+85859067 | MS.gene026734:CDS |
| ACATGTAAACGAAGAAGAAA+AGG | 0.495399 | 4.1:+85857672 | MS.gene026734:CDS |
| TTCCAAGATGATTCAATGGA+TGG | 0.499743 | 4.1:+85859071 | MS.gene026734:CDS |
| TGGTTCCCTTGTTTGGGTGG+AGG | 0.501182 | 4.1:+85859028 | MS.gene026734:CDS |
| GAGTGGTTGCCATTCATTCA+GGG | 0.501280 | 4.1:+85860805 | MS.gene026734:CDS |
| AACCCAAACATGTTGAATGT+TGG | 0.507027 | 4.1:+85858858 | MS.gene026734:CDS |
| GAAGAAAAGGCACGCATGGT+TGG | 0.513960 | 4.1:+85857685 | MS.gene026734:CDS |
| GGCGTGAGAATGTAGAAGCC+TGG | 0.539666 | 4.1:-85857529 | None:intergenic |
| AGAATGTAGAAGCCTGGAAG+TGG | 0.541500 | 4.1:-85857523 | None:intergenic |
| CATTTCCCTCCACCCAAACA+AGG | 0.541525 | 4.1:-85859034 | None:intergenic |
| CGAAGAAGAAAAGGCACGCA+TGG | 0.547778 | 4.1:+85857681 | MS.gene026734:CDS |
| GGGTATTGAAACATGGCGGC+AGG | 0.551535 | 4.1:+85859269 | MS.gene026734:intron |
| TTCTCAGTTATTCCACGCAT+AGG | 0.551549 | 4.1:+85859840 | MS.gene026734:CDS |
| CATCAATGATTGCTGATGCA+GGG | 0.553506 | 4.1:+85860748 | MS.gene026734:CDS |
| TAAACAGAGTTAAGCAGAGA+GGG | 0.553594 | 4.1:+85858775 | MS.gene026734:CDS |
| ATGAAGCATCTTGATGTGGC+TGG | 0.567195 | 4.1:+85858054 | MS.gene026734:CDS |
| GAATAGTCACTAAAAGGTTG+GGG | 0.571220 | 4.1:+85857475 | MS.gene026734:CDS |
| AGAGTATGAGAATCTAGTTG+GGG | 0.577545 | 4.1:+85860782 | MS.gene026734:CDS |
| TATTCCACGCATAGGAGAGA+TGG | 0.581177 | 4.1:+85859848 | MS.gene026734:CDS |
| CATGGCTTAGTTCAAGGCAT+AGG | 0.588289 | 4.1:-85859294 | None:intergenic |
| AAGCAGAGAGGGCTTCAAGA+CGG | 0.589957 | 4.1:+85858786 | MS.gene026734:CDS |
| CTGGAAGTGGAAGATAATGC+TGG | 0.589974 | 4.1:-85857510 | None:intergenic |
| GTTGAATGTTGGCAAACAGC+GGG | 0.591584 | 4.1:+85858869 | MS.gene026734:CDS |
| TTTAACAGGGTATTGAAACA+TGG | 0.607121 | 4.1:+85859262 | MS.gene026734:intron |
| TGAATGATTTAATGAGTGCT+GGG | 0.607327 | 4.1:+85857746 | MS.gene026734:CDS |
| TAAATATAGGAAGACTAACA+TGG | 0.618541 | 4.1:-85859312 | None:intergenic |
| TGGAATGAAGCATCTTGATG+TGG | 0.622526 | 4.1:+85858050 | MS.gene026734:CDS |
| GCAACCATCTCTCCTATGCG+TGG | 0.623759 | 4.1:-85859852 | None:intergenic |
| ATAAACAGAGTTAAGCAGAG+AGG | 0.627426 | 4.1:+85858774 | MS.gene026734:CDS |
| AAGGAATTGATAACCTGTGG+GGG | 0.636836 | 4.1:-85859924 | None:intergenic |
| GAGTATGAGAATCTAGTTGG+GGG | 0.647356 | 4.1:+85860783 | MS.gene026734:CDS |
| TCCAGGAAAAGGATTCAACA+TGG | 0.651935 | 4.1:-85858031 | None:intergenic |
| TGTTGAATGTTGGCAAACAG+CGG | 0.653881 | 4.1:+85858868 | MS.gene026734:CDS |
| GAAGGAATTGATAACCTGTG+GGG | 0.670066 | 4.1:-85859925 | None:intergenic |
| ATTTCCCTCCACCCAAACAA+GGG | 0.670211 | 4.1:-85859033 | None:intergenic |
| AAGCATCTTGATGTGGCTGG+TGG | 0.685724 | 4.1:+85858057 | MS.gene026734:CDS |
| AACAGGGTATTGAAACATGG+CGG | 0.708414 | 4.1:+85859265 | MS.gene026734:intron |
| ATGTAACTAACCGAAACTGG+TGG | 0.730211 | 4.1:-85857550 | None:intergenic |
| GTGCTGGGTTGCATAGACTG+TGG | 0.765413 | 4.1:+85857761 | MS.gene026734:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATAATGAATAACAT+AGG | - | chr4.1:85860151-85860170 | None:intergenic | 10.0% |
| !! | GTAATAATTTAAAAAAGAAA+TGG | - | chr4.1:85857920-85857939 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTAACAAAAAAAA+TGG | - | chr4.1:85857584-85857603 | None:intergenic | 10.0% |
| !! | AATTATTTATAGAATGGAAT+AGG | - | chr4.1:85857804-85857823 | None:intergenic | 15.0% |
| !! | TACAAGGTATATAAATTAAA+GGG | - | chr4.1:85859477-85859496 | None:intergenic | 15.0% |
| !! | TATAATCATTAATAAGCATA+AGG | + | chr4.1:85858702-85858721 | MS.gene026734:intron | 15.0% |
| !! | TTAATTTATCTTCATTTGTT+AGG | + | chr4.1:85858963-85858982 | MS.gene026734:intron | 15.0% |
| !! | TTACAAGGTATATAAATTAA+AGG | - | chr4.1:85859478-85859497 | None:intergenic | 15.0% |
| !! | TTAGAAACTATAAAGTTTAA+AGG | - | chr4.1:85858108-85858127 | None:intergenic | 15.0% |
| !!! | ACATTTTTCCATAAAAAATT+AGG | + | chr4.1:85857643-85857662 | MS.gene026734:intron | 15.0% |
| !!! | ATTTTTTATTGATTTTACAG+GGG | + | chr4.1:85858725-85858744 | MS.gene026734:intron | 15.0% |
| !!! | GATTTTTTATTGATTTTACA+GGG | + | chr4.1:85858724-85858743 | MS.gene026734:intron | 15.0% |
| !!! | TGACTAGTTTTTTTTTTTTT+AGG | - | chr4.1:85860521-85860540 | None:intergenic | 15.0% |
| !!! | TTTTTTTCATTTCTTTAACA+GGG | + | chr4.1:85859249-85859268 | MS.gene026734:intron | 15.0% |
| !! | AAACAAATAATATTAACCTG+TGG | + | chr4.1:85857596-85857615 | MS.gene026734:intron | 20.0% |
| !! | AAACATAATCGAAGTTTATA+TGG | + | chr4.1:85859501-85859520 | MS.gene026734:intron | 20.0% |
| !! | AGTTATATTCTATTCAAGTA+TGG | - | chr4.1:85859777-85859796 | None:intergenic | 20.0% |
| !! | CATGAGATATCAATAAATAA+GGG | + | chr4.1:85858211-85858230 | MS.gene026734:intron | 20.0% |
| !! | TGACTAATGTATTATATTGA+TGG | + | chr4.1:85860708-85860727 | MS.gene026734:intron | 20.0% |
| !!! | ATATAAAATGTTACTTTGAG+TGG | + | chr4.1:85858131-85858150 | MS.gene026734:intron | 20.0% |
| !!! | GGATTTTTTATTGATTTTAC+AGG | + | chr4.1:85858723-85858742 | MS.gene026734:intron | 20.0% |
| !!! | GTTTGAAACCTAATTTTTTA+TGG | - | chr4.1:85857654-85857673 | None:intergenic | 20.0% |
| !!! | GTTTTTATGCTTATTTTGAT+AGG | + | chr4.1:85858993-85859012 | MS.gene026734:intron | 20.0% |
| !!! | GTTTTTTTCATTTCTTTAAC+AGG | + | chr4.1:85859248-85859267 | MS.gene026734:intron | 20.0% |
| !!! | TCGATTATGTTTTATTTACA+AGG | - | chr4.1:85859493-85859512 | None:intergenic | 20.0% |
| ! | ACATTAGTCAATACAGAAAA+GGG | - | chr4.1:85860698-85860717 | None:intergenic | 25.0% |
| ! | ACCTTATATAAACAGAAACT+TGG | - | chr4.1:85858343-85858362 | None:intergenic | 25.0% |
| ! | ACTAAAGCATATAAAGATGT+TGG | - | chr4.1:85860074-85860093 | None:intergenic | 25.0% |
| ! | ACTCACAGTTCTTTAAATAT+AGG | - | chr4.1:85859328-85859347 | None:intergenic | 25.0% |
| ! | ATAAAAGAAGTGATGAAGTA+TGG | + | chr4.1:85858422-85858441 | MS.gene026734:intron | 25.0% |
| ! | ATAATGAATAACATAGGAGA+TGG | - | chr4.1:85860145-85860164 | None:intergenic | 25.0% |
| ! | GCATGAGATATCAATAAATA+AGG | + | chr4.1:85858210-85858229 | MS.gene026734:intron | 25.0% |
| ! | TAAATATAGGAAGACTAACA+TGG | - | chr4.1:85859315-85859334 | None:intergenic | 25.0% |
| ! | TACATTAGTCAATACAGAAA+AGG | - | chr4.1:85860699-85860718 | None:intergenic | 25.0% |
| ! | TCTCCATATTAATGCAATAT+TGG | - | chr4.1:85858644-85858663 | None:intergenic | 25.0% |
| ! | TTTGAAAATTGAGGAATTCT+CGG | + | chr4.1:85859696-85859715 | MS.gene026734:intron | 25.0% |
| !! | ACATTCTCATTTACCTTTTT+CGG | - | chr4.1:85858898-85858917 | None:intergenic | 25.0% |
| !! | AGATCAGATATACTCATTTT+GGG | + | chr4.1:85860307-85860326 | MS.gene026734:intron | 25.0% |
| !! | GGATATATCTTTGAAAATTG+AGG | + | chr4.1:85859687-85859706 | MS.gene026734:intron | 25.0% |
| !! | TACGTTCATACTTCAAATTT+TGG | + | chr4.1:85859544-85859563 | MS.gene026734:intron | 25.0% |
| !! | TTTTGGACAAAAGAATTAAG+AGG | + | chr4.1:85859561-85859580 | MS.gene026734:intron | 25.0% |
| !!! | ACTGTGTAGTTTTTTTATGT+TGG | + | chr4.1:85860583-85860602 | MS.gene026734:intron | 25.0% |
| !!! | ATGCTTATTTTGATAGGTTA+TGG | + | chr4.1:85858999-85859018 | MS.gene026734:intron | 25.0% |
| !!! | CATTTTAGCTTGAAAGAAAA+GGG | + | chr4.1:85859975-85859994 | MS.gene026734:intron | 25.0% |
| !!! | TCATTTTAGCTTGAAAGAAA+AGG | + | chr4.1:85859974-85859993 | MS.gene026734:intron | 25.0% |
| AAACAACAGATAATGTGTCT+CGG | + | chr4.1:85859585-85859604 | MS.gene026734:intron | 30.0% | |
| AAGTTTAAAGGTGAGTATGA+AGG | - | chr4.1:85858096-85858115 | None:intergenic | 30.0% | |
| AATCCTATACAGAACTAACA+CGG | - | chr4.1:85857968-85857987 | None:intergenic | 30.0% | |
| ACATGTAAACGAAGAAGAAA+AGG | + | chr4.1:85857672-85857691 | MS.gene026734:CDS | 30.0% | |
| AGCACTCATTAAATCATTCA+TGG | - | chr4.1:85857746-85857765 | None:intergenic | 30.0% | |
| ATGAATGATTTAATGAGTGC+TGG | + | chr4.1:85857745-85857764 | MS.gene026734:CDS | 30.0% | |
| ATGGTTACACTATTGCATTT+GGG | + | chr4.1:85859090-85859109 | MS.gene026734:CDS | 30.0% | |
| ATTAATATGGAGAGACTTGA+AGG | + | chr4.1:85858651-85858670 | MS.gene026734:intron | 30.0% | |
| CGACATTAATGCGTAAAAAT+CGG | - | chr4.1:85857942-85857961 | None:intergenic | 30.0% | |
| CTTGAAAAATATGTAGTGTG+TGG | + | chr4.1:85858399-85858418 | MS.gene026734:intron | 30.0% | |
| GAACATGTAAAAACTAGTCA+CGG | + | chr4.1:85860371-85860390 | MS.gene026734:intron | 30.0% | |
| GCCAAGTTTCTGTTTATATA+AGG | + | chr4.1:85858339-85858358 | MS.gene026734:intron | 30.0% | |
| TAAGTACAGCTATCAATAGA+AGG | - | chr4.1:85859946-85859965 | None:intergenic | 30.0% | |
| TAATTGAAACCCAAGAAAAG+AGG | + | chr4.1:85860166-85860185 | MS.gene026734:intron | 30.0% | |
| TAATTTCTGCTCAATTTCTC+AGG | + | chr4.1:85858001-85858020 | MS.gene026734:intron | 30.0% | |
| TAGAGTATGAGAATCTAGTT+GGG | + | chr4.1:85860781-85860800 | MS.gene026734:CDS | 30.0% | |
| TCGCCAATATTGCATTAATA+TGG | + | chr4.1:85858638-85858657 | MS.gene026734:intron | 30.0% | |
| TGAATGATTTAATGAGTGCT+GGG | + | chr4.1:85857746-85857765 | MS.gene026734:CDS | 30.0% | |
| TGTAATTGACACGATAAAGT+GGG | - | chr4.1:85860333-85860352 | None:intergenic | 30.0% | |
| TGTAGTAGCAGTTAGATAAA+AGG | + | chr4.1:85858169-85858188 | MS.gene026734:intron | 30.0% | |
| TTAATATGGAGAGACTTGAA+GGG | + | chr4.1:85858652-85858671 | MS.gene026734:intron | 30.0% | |
| TTCTATTCAAGTATGGAAGA+AGG | - | chr4.1:85859770-85859789 | None:intergenic | 30.0% | |
| TTCTCAAGAATGATGTGAAT+TGG | + | chr4.1:85859363-85859382 | MS.gene026734:intron | 30.0% | |
| TTGAAGTATGAACGTAAACA+AGG | - | chr4.1:85859540-85859559 | None:intergenic | 30.0% | |
| TTGTAATTGACACGATAAAG+TGG | - | chr4.1:85860334-85860353 | None:intergenic | 30.0% | |
| ! | ATACAAAAGCCTCTTTTCTT+GGG | - | chr4.1:85860178-85860197 | None:intergenic | 30.0% |
| ! | GAGATCAGATATACTCATTT+TGG | + | chr4.1:85860306-85860325 | MS.gene026734:intron | 30.0% |
| ! | GATTTTTATCCCTGAATGAA+TGG | - | chr4.1:85860817-85860836 | None:intergenic | 30.0% |
| ! | TATACAAAAGCCTCTTTTCT+TGG | - | chr4.1:85860179-85860198 | None:intergenic | 30.0% |
| !! | GTATTATATTGATGGATTGC+AGG | + | chr4.1:85860716-85860735 | MS.gene026734:intron | 30.0% |
| !! | TTTAACAGGGTATTGAAACA+TGG | + | chr4.1:85859262-85859281 | MS.gene026734:intron | 30.0% |
| AACAACAGATAATGTGTCTC+GGG | + | chr4.1:85859586-85859605 | MS.gene026734:intron | 35.0% | |
| AACCATCCATTGAATCATCT+TGG | - | chr4.1:85859076-85859095 | None:intergenic | 35.0% | |
| AACCCAAACATGTTGAATGT+TGG | + | chr4.1:85858858-85858877 | MS.gene026734:CDS | 35.0% | |
| AAGTTCTTAGTGAAGCTCAT+AGG | + | chr4.1:85859138-85859157 | MS.gene026734:CDS | 35.0% | |
| AGAGTATGAGAATCTAGTTG+GGG | + | chr4.1:85860782-85860801 | MS.gene026734:CDS | 35.0% | |
| ATAAACAGAGTTAAGCAGAG+AGG | + | chr4.1:85858774-85858793 | MS.gene026734:CDS | 35.0% | |
| ATACAGCTATACCCTATGAA+AGG | - | chr4.1:85858589-85858608 | None:intergenic | 35.0% | |
| ATGCTGTAAAATTCTCACCA+TGG | + | chr4.1:85858481-85858500 | MS.gene026734:intron | 35.0% | |
| CATCTTGTAGAAGGATCTAT+AGG | - | chr4.1:85860028-85860047 | None:intergenic | 35.0% | |
| GAATAGTCACTAAAAGGTTG+GGG | + | chr4.1:85857475-85857494 | MS.gene026734:CDS | 35.0% | |
| GAGTTTCCAAGATGATTCAA+TGG | + | chr4.1:85859067-85859086 | MS.gene026734:CDS | 35.0% | |
| GATGGTCATTATCAACCAAT+TGG | - | chr4.1:85860127-85860146 | None:intergenic | 35.0% | |
| GATGGTTACACTATTGCATT+TGG | + | chr4.1:85859089-85859108 | MS.gene026734:CDS | 35.0% | |
| GATTCTCATACTCTACTTTC+TGG | - | chr4.1:85860776-85860795 | None:intergenic | 35.0% | |
| GGAATAGTCACTAAAAGGTT+GGG | + | chr4.1:85857474-85857493 | MS.gene026734:CDS | 35.0% | |
| GTAGAGTATGAGAATCTAGT+TGG | + | chr4.1:85860780-85860799 | MS.gene026734:CDS | 35.0% | |
| TAAACAGAGTTAAGCAGAGA+GGG | + | chr4.1:85858775-85858794 | MS.gene026734:CDS | 35.0% | |
| TACAGCTATACCCTATGAAA+GGG | - | chr4.1:85858588-85858607 | None:intergenic | 35.0% | |
| TCAGAGGGATATAGTTCAAA+AGG | + | chr4.1:85858450-85858469 | MS.gene026734:intron | 35.0% | |
| TGAATGTAACTAACCGAAAC+TGG | - | chr4.1:85857556-85857575 | None:intergenic | 35.0% | |
| TGCCAACATTCAACATGTTT+GGG | - | chr4.1:85858863-85858882 | None:intergenic | 35.0% | |
| TGCTACAGATAATGTGAGAT+TGG | + | chr4.1:85858311-85858330 | MS.gene026734:intron | 35.0% | |
| TGCTGTAAAATTCTCACCAT+GGG | + | chr4.1:85858482-85858501 | MS.gene026734:intron | 35.0% | |
| TTCCAAGATGATTCAATGGA+TGG | + | chr4.1:85859071-85859090 | MS.gene026734:CDS | 35.0% | |
| TTGATAGGTTATGGAGAAGA+TGG | + | chr4.1:85859008-85859027 | MS.gene026734:intron | 35.0% | |
| TTGCCAACATTCAACATGTT+TGG | - | chr4.1:85858864-85858883 | None:intergenic | 35.0% | |
| TTGGCAATGTCGATATTGTT+AGG | + | chr4.1:85860413-85860432 | MS.gene026734:intron | 35.0% | |
| ! | ACACTATTGCATTTGGGATA+AGG | + | chr4.1:85859096-85859115 | MS.gene026734:CDS | 35.0% |
| ! | AGAAGGAATTGATAACCTGT+GGG | - | chr4.1:85859929-85859948 | None:intergenic | 35.0% |
| ! | CTTTGGGAATAGTCACTAAA+AGG | + | chr4.1:85857469-85857488 | MS.gene026734:CDS | 35.0% |
| ! | GAATGATGTGAATTGGTGTT+TGG | + | chr4.1:85859370-85859389 | MS.gene026734:intron | 35.0% |
| ! | GTTCACGAGTTAATTTGGTT+TGG | - | chr4.1:85859722-85859741 | None:intergenic | 35.0% |
| ! | TAGAAGGAATTGATAACCTG+TGG | - | chr4.1:85859930-85859949 | None:intergenic | 35.0% |
| !! | ACTCTCAACTAAGTACTGAT+AGG | - | chr4.1:85859892-85859911 | None:intergenic | 35.0% |
| !! | AGTACTTAGTTGAGAGTATC+CGG | + | chr4.1:85859895-85859914 | MS.gene026734:CDS | 35.0% |
| !! | TTGCTTATCGCTTGTTTCTA+AGG | - | chr4.1:85859643-85859662 | None:intergenic | 35.0% |
| !!! | GGATGTTGCTTTTAGAATCT+TGG | + | chr4.1:85858746-85858765 | MS.gene026734:CDS | 35.0% |
| AAATGTCAAGAAAGCCGTGA+CGG | + | chr4.1:85860668-85860687 | MS.gene026734:intron | 40.0% | |
| AAGGATCTATAGGTCTGTTC+AGG | - | chr4.1:85860018-85860037 | None:intergenic | 40.0% | |
| AAGTGGTTCCAACCTTTCAT+TGG | - | chr4.1:85858513-85858532 | None:intergenic | 40.0% | |
| ACAACAGATAATGTGTCTCG+GGG | + | chr4.1:85859587-85859606 | MS.gene026734:intron | 40.0% | |
| ACAGTTATGTGAGTTTCAGG+TGG | + | chr4.1:85860472-85860491 | MS.gene026734:intron | 40.0% | |
| ACATCAAGATGCTTCATTCC+AGG | - | chr4.1:85858051-85858070 | None:intergenic | 40.0% | |
| ACGTGGTTCACGAGTTAATT+TGG | - | chr4.1:85859727-85859746 | None:intergenic | 40.0% | |
| AGAAGTGATGAAGTATGGAC+TGG | + | chr4.1:85858427-85858446 | MS.gene026734:intron | 40.0% | |
| AGATCCTTCTACAAGATGTC+CGG | + | chr4.1:85860030-85860049 | MS.gene026734:intron | 40.0% | |
| AGATGCTTCATTCCAGGAAA+AGG | - | chr4.1:85858045-85858064 | None:intergenic | 40.0% | |
| AGATTTGTCCTATGTTGCAC+CGG | + | chr4.1:85857848-85857867 | MS.gene026734:intron | 40.0% | |
| AGTCATACAGTCCCTTTCAT+AGG | + | chr4.1:85858574-85858593 | MS.gene026734:intron | 40.0% | |
| ATGAAAGGGACTGTATGACT+AGG | - | chr4.1:85858574-85858593 | None:intergenic | 40.0% | |
| ATGTAACTAACCGAAACTGG+TGG | - | chr4.1:85857553-85857572 | None:intergenic | 40.0% | |
| ATTACTTCGAGCTTTCGTGA+AGG | + | chr4.1:85858932-85858951 | MS.gene026734:intron | 40.0% | |
| CAATGTCGATATTGTTAGGC+TGG | + | chr4.1:85860417-85860436 | MS.gene026734:intron | 40.0% | |
| CATCAATGATTGCTGATGCA+GGG | + | chr4.1:85860748-85860767 | MS.gene026734:CDS | 40.0% | |
| CTCACAGTTATGTGAGTTTC+AGG | + | chr4.1:85860469-85860488 | MS.gene026734:intron | 40.0% | |
| CTGAAACTCACATAACTGTG+AGG | - | chr4.1:85860471-85860490 | None:intergenic | 40.0% | |
| CTTGAAAGAAAAGGGTAGTC+AGG | + | chr4.1:85859983-85860002 | MS.gene026734:intron | 40.0% | |
| GACTAACATGGCTTAGTTCA+AGG | - | chr4.1:85859303-85859322 | None:intergenic | 40.0% | |
| GAGTATGAGAATCTAGTTGG+GGG | + | chr4.1:85860783-85860802 | MS.gene026734:CDS | 40.0% | |
| GCTGTAAAATTCTCACCATG+GGG | + | chr4.1:85858483-85858502 | MS.gene026734:intron | 40.0% | |
| GGAAGAAGGCTATGATTCTA+TGG | - | chr4.1:85859756-85859775 | None:intergenic | 40.0% | |
| GGGAATAGTCACTAAAAGGT+TGG | + | chr4.1:85857473-85857492 | MS.gene026734:CDS | 40.0% | |
| GTCATACAGTCCCTTTCATA+GGG | + | chr4.1:85858575-85858594 | MS.gene026734:intron | 40.0% | |
| GTCATGTTTGTATCCTACAC+CGG | - | chr4.1:85857870-85857889 | None:intergenic | 40.0% | |
| TCAATTTCACAATGCTCCAC+AGG | - | chr4.1:85857615-85857634 | None:intergenic | 40.0% | |
| TCCAGGAAAAGGATTCAACA+TGG | - | chr4.1:85858034-85858053 | None:intergenic | 40.0% | |
| TCGACATTGCCAATTAAGCT+AGG | - | chr4.1:85860406-85860425 | None:intergenic | 40.0% | |
| TCTATAGGTCTGTTCAGGAA+TGG | - | chr4.1:85860013-85860032 | None:intergenic | 40.0% | |
| TCTGATCTCAACATTGTCTG+CGG | - | chr4.1:85860295-85860314 | None:intergenic | 40.0% | |
| TCTTAGTGAAGCTCATAGGT+TGG | + | chr4.1:85859142-85859161 | MS.gene026734:intron | 40.0% | |
| TGATTCTATGGCACTTTACG+TGG | - | chr4.1:85859744-85859763 | None:intergenic | 40.0% | |
| TGCATAGACTGTGGAAAGAA+AGG | + | chr4.1:85857770-85857789 | MS.gene026734:CDS | 40.0% | |
| TGTTACTCTTCTTCTCTTGC+AGG | + | chr4.1:85859802-85859821 | MS.gene026734:intron | 40.0% | |
| TGTTGAATGTTGGCAAACAG+CGG | + | chr4.1:85858868-85858887 | MS.gene026734:CDS | 40.0% | |
| TTCTCAGTTATTCCACGCAT+AGG | + | chr4.1:85859840-85859859 | MS.gene026734:CDS | 40.0% | |
| ! | AAAGCGCTAGAGAATTGTGT+GGG | + | chr4.1:85859661-85859680 | MS.gene026734:intron | 40.0% |
| ! | AAGGAATTGATAACCTGTGG+GGG | - | chr4.1:85859927-85859946 | None:intergenic | 40.0% |
| ! | AGAAGATGGTTCCCTTGTTT+GGG | + | chr4.1:85859022-85859041 | MS.gene026734:CDS | 40.0% |
| ! | GAAGGAATTGATAACCTGTG+GGG | - | chr4.1:85859928-85859947 | None:intergenic | 40.0% |
| ! | GTGAATAAAAGCGTAGAGTG+AGG | + | chr4.1:85860092-85860111 | MS.gene026734:intron | 40.0% |
| ! | TCCATGTTGAATCCTTTTCC+TGG | + | chr4.1:85858030-85858049 | MS.gene026734:CDS | 40.0% |
| ! | TGGAATGAAGCATCTTGATG+TGG | + | chr4.1:85858050-85858069 | MS.gene026734:CDS | 40.0% |
| !! | AACAGGGTATTGAAACATGG+CGG | + | chr4.1:85859265-85859284 | MS.gene026734:intron | 40.0% |
| !! | CGGTTTTATCGATGTTCTAG+AGG | + | chr4.1:85858806-85858825 | MS.gene026734:CDS | 40.0% |
| !! | TGTCCGTGTTAGTTCTGTAT+AGG | + | chr4.1:85857962-85857981 | MS.gene026734:intron | 40.0% |
| AAAACTAGTCACGGTCCGTA+AGG | + | chr4.1:85860380-85860399 | MS.gene026734:intron | 45.0% | |
| AAAGCGTAGAGTGAGGAAGA+TGG | + | chr4.1:85860099-85860118 | MS.gene026734:intron | 45.0% | |
| AAAGGTTGGAACCACTTGTG+AGG | + | chr4.1:85858516-85858535 | MS.gene026734:intron | 45.0% | |
| AAGCGTAGAGTGAGGAAGAT+GGG | + | chr4.1:85860100-85860119 | MS.gene026734:intron | 45.0% | |
| AAGGTTGGAACCACTTGTGA+GGG | + | chr4.1:85858517-85858536 | MS.gene026734:intron | 45.0% | |
| AATGTCAAGAAAGCCGTGAC+GGG | + | chr4.1:85860669-85860688 | MS.gene026734:intron | 45.0% | |
| ACAGCTGAATGTGGAAGACT+GGG | - | chr4.1:85860219-85860238 | None:intergenic | 45.0% | |
| AGAATGTAGAAGCCTGGAAG+TGG | - | chr4.1:85857526-85857545 | None:intergenic | 45.0% | |
| ATTTCCCTCCACCCAAACAA+GGG | - | chr4.1:85859036-85859055 | None:intergenic | 45.0% | |
| CAACAGATAATGTGTCTCGG+GGG | + | chr4.1:85859588-85859607 | MS.gene026734:intron | 45.0% | |
| CACATTCAGCTGTAAGAGGA+AGG | + | chr4.1:85860226-85860245 | MS.gene026734:intron | 45.0% | |
| CACGGCTTTCTTGACATTTG+AGG | - | chr4.1:85860667-85860686 | None:intergenic | 45.0% | |
| CAGCATTATCTTCCACTTCC+AGG | + | chr4.1:85857511-85857530 | MS.gene026734:CDS | 45.0% | |
| CATGGCTTAGTTCAAGGCAT+AGG | - | chr4.1:85859297-85859316 | None:intergenic | 45.0% | |
| CTGGAAGTGGAAGATAATGC+TGG | - | chr4.1:85857513-85857532 | None:intergenic | 45.0% | |
| CTTCCACATTCAGCTGTAAG+AGG | + | chr4.1:85860222-85860241 | MS.gene026734:intron | 45.0% | |
| CTTCCTCTTACAGCTGAATG+TGG | - | chr4.1:85860228-85860247 | None:intergenic | 45.0% | |
| GAGAAGATGGTTCCCTTGTT+TGG | + | chr4.1:85859021-85859040 | MS.gene026734:CDS | 45.0% | |
| GAGTGGTTGCCATTCATTCA+GGG | + | chr4.1:85860805-85860824 | MS.gene026734:CDS | 45.0% | |
| GCAGTGAACTGAACTGTATC+CGG | - | chr4.1:85860052-85860071 | None:intergenic | 45.0% | |
| GCATCAATGATTGCTGATGC+AGG | + | chr4.1:85860747-85860766 | MS.gene026734:CDS | 45.0% | |
| GCCAATTAAGCTAGGCCTTA+CGG | - | chr4.1:85860398-85860417 | None:intergenic | 45.0% | |
| GCTAGAGAATTGTGTGGGAA+AGG | + | chr4.1:85859666-85859685 | MS.gene026734:intron | 45.0% | |
| GTAAAATTCTCACCATGGGG+AGG | + | chr4.1:85858486-85858505 | MS.gene026734:intron | 45.0% | |
| GTATCCGGACATCTTGTAGA+AGG | - | chr4.1:85860037-85860056 | None:intergenic | 45.0% | |
| GTTGAATGTTGGCAAACAGC+GGG | + | chr4.1:85858869-85858888 | MS.gene026734:CDS | 45.0% | |
| TACAGCTGAATGTGGAAGAC+TGG | - | chr4.1:85860220-85860239 | None:intergenic | 45.0% | |
| TATTCCACGCATAGGAGAGA+TGG | + | chr4.1:85859848-85859867 | MS.gene026734:CDS | 45.0% | |
| TCCGTAAGGCCTAGCTTAAT+TGG | + | chr4.1:85860394-85860413 | MS.gene026734:intron | 45.0% | |
| TTAGGCTGGACATCTTCATC+CGG | + | chr4.1:85860431-85860450 | MS.gene026734:intron | 45.0% | |
| ! | ATGAAGCATCTTGATGTGGC+TGG | + | chr4.1:85858054-85858073 | MS.gene026734:CDS | 45.0% |
| ! | CAAAGCGCTAGAGAATTGTG+TGG | + | chr4.1:85859660-85859679 | MS.gene026734:intron | 45.0% |
| !! | ATGAAGTATGGACTGGTCAG+AGG | + | chr4.1:85858434-85858453 | MS.gene026734:intron | 45.0% |
| !! | TGAAGTATGGACTGGTCAGA+GGG | + | chr4.1:85858435-85858454 | MS.gene026734:intron | 45.0% |
| !! | AATATAAATTATTTATAGAA+TGG | - | chr4.1:85857810-85857829 | None:intergenic | 5.0% |
| !! | AATTAAAAATTTAAGTAAAT+TGG | + | chr4.1:85858370-85858389 | MS.gene026734:intron | 5.0% |
| AAGCAGAGAGGGCTTCAAGA+CGG | + | chr4.1:85858786-85858805 | MS.gene026734:CDS | 50.0% | |
| AAGCATCTTGATGTGGCTGG+TGG | + | chr4.1:85858057-85858076 | MS.gene026734:CDS | 50.0% | |
| AGTCTAGAGACCCTCACAAG+TGG | - | chr4.1:85858530-85858549 | None:intergenic | 50.0% | |
| ATCCTACACCGGTGCAACAT+AGG | - | chr4.1:85857859-85857878 | None:intergenic | 50.0% | |
| CAGAAAAGGGTAACCCGTCA+CGG | - | chr4.1:85860685-85860704 | None:intergenic | 50.0% | |
| CAGCTGAATGTGGAAGACTG+GGG | - | chr4.1:85860218-85860237 | None:intergenic | 50.0% | |
| CATTCTCACGCCACCAGTTT+CGG | + | chr4.1:85857540-85857559 | MS.gene026734:CDS | 50.0% | |
| CATTTCCCTCCACCCAAACA+AGG | - | chr4.1:85859037-85859056 | None:intergenic | 50.0% | |
| CTCACATAACTGTGAGGTCC+CGG | - | chr4.1:85860465-85860484 | None:intergenic | 50.0% | |
| GGACTGTATGACTAGGACGA+TGG | - | chr4.1:85858567-85858586 | None:intergenic | 50.0% | |
| GGAGTGGTTGCCATTCATTC+AGG | + | chr4.1:85860804-85860823 | MS.gene026734:CDS | 50.0% | |
| GTGAGGAAGATGGGTCCAAT+TGG | + | chr4.1:85860109-85860128 | MS.gene026734:intron | 50.0% | |
| TAGGCTGGACATCTTCATCC+GGG | + | chr4.1:85860432-85860451 | MS.gene026734:intron | 50.0% | |
| TCACATAACTGTGAGGTCCC+GGG | - | chr4.1:85860464-85860483 | None:intergenic | 50.0% | |
| TCTTCATCCGGGTTCAAACC+CGG | + | chr4.1:85860443-85860462 | MS.gene026734:intron | 50.0% | |
| TGAGAATCTAGTTGGGGGAG+TGG | + | chr4.1:85860788-85860807 | MS.gene026734:CDS | 50.0% | |
| ! | AGATGGTTCCCTTGTTTGGG+TGG | + | chr4.1:85859025-85859044 | MS.gene026734:CDS | 50.0% |
| ! | CGAAGAAGAAAAGGCACGCA+TGG | + | chr4.1:85857681-85857700 | MS.gene026734:CDS | 50.0% |
| ! | GAAGAAAAGGCACGCATGGT+TGG | + | chr4.1:85857685-85857704 | MS.gene026734:CDS | 50.0% |
| CCATGGGGAGGTCCAATGAA+AGG | + | chr4.1:85858498-85858517 | MS.gene026734:intron | 55.0% | |
| CCTTTCATTGGACCTCCCCA+TGG | - | chr4.1:85858501-85858520 | None:intergenic | 55.0% | |
| CGCATAGGAGAGATGGTTGC+TGG | + | chr4.1:85859855-85859874 | MS.gene026734:CDS | 55.0% | |
| CTTCATCCGGGTTCAAACCC+GGG | + | chr4.1:85860444-85860463 | MS.gene026734:intron | 55.0% | |
| GCAACCATCTCTCCTATGCG+TGG | - | chr4.1:85859855-85859874 | None:intergenic | 55.0% | |
| GGCGTGAGAATGTAGAAGCC+TGG | - | chr4.1:85857532-85857551 | None:intergenic | 55.0% | |
| GGGGAGGTCCAATGAAAGGT+TGG | + | chr4.1:85858502-85858521 | MS.gene026734:intron | 55.0% | |
| GTGCTGGGTTGCATAGACTG+TGG | + | chr4.1:85857761-85857780 | MS.gene026734:CDS | 55.0% | |
| TAACCTGTGGGGGAAAACGC+CGG | - | chr4.1:85859917-85859936 | None:intergenic | 55.0% | |
| ! | GGTTCCCTTGTTTGGGTGGA+GGG | + | chr4.1:85859029-85859048 | MS.gene026734:CDS | 55.0% |
| ! | GTCCTATGTTGCACCGGTGT+AGG | + | chr4.1:85857854-85857873 | MS.gene026734:intron | 55.0% |
| ! | TGGTTCCCTTGTTTGGGTGG+AGG | + | chr4.1:85859028-85859047 | MS.gene026734:CDS | 55.0% |
| !! | AAACAGCGGGCTGCCGAAAA+AGG | + | chr4.1:85858882-85858901 | MS.gene026734:CDS | 55.0% |
| !! | GGGTATTGAAACATGGCGGC+AGG | + | chr4.1:85859269-85859288 | MS.gene026734:intron | 55.0% |
| CTTGATGTGGCTGGTGGCAC+AGG | + | chr4.1:85858063-85858082 | MS.gene026734:CDS | 60.0% | |
| TGAGGTCCCGGGTTTGAACC+CGG | - | chr4.1:85860453-85860472 | None:intergenic | 60.0% | |
| ! | TATCCGGCGTTTTCCCCCAC+AGG | + | chr4.1:85859911-85859930 | MS.gene026734:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 85857465 | 85860839 | 85857465 | ID=MS.gene026734 |
| chr4.1 | mRNA | 85857465 | 85860839 | 85857465 | ID=MS.gene026734.t1;Parent=MS.gene026734 |
| chr4.1 | exon | 85857465 | 85857561 | 85857465 | ID=MS.gene026734.t1.exon1;Parent=MS.gene026734.t1 |
| chr4.1 | CDS | 85857465 | 85857561 | 85857465 | ID=cds.MS.gene026734.t1;Parent=MS.gene026734.t1 |
| chr4.1 | exon | 85857665 | 85857791 | 85857665 | ID=MS.gene026734.t1.exon2;Parent=MS.gene026734.t1 |
| chr4.1 | CDS | 85857665 | 85857791 | 85857665 | ID=cds.MS.gene026734.t1;Parent=MS.gene026734.t1 |
| chr4.1 | exon | 85858023 | 85858084 | 85858023 | ID=MS.gene026734.t1.exon3;Parent=MS.gene026734.t1 |
| chr4.1 | CDS | 85858023 | 85858084 | 85858023 | ID=cds.MS.gene026734.t1;Parent=MS.gene026734.t1 |
| chr4.1 | exon | 85858745 | 85858903 | 85858745 | ID=MS.gene026734.t1.exon4;Parent=MS.gene026734.t1 |
| chr4.1 | CDS | 85858745 | 85858903 | 85858745 | ID=cds.MS.gene026734.t1;Parent=MS.gene026734.t1 |
| chr4.1 | exon | 85859015 | 85859159 | 85859015 | ID=MS.gene026734.t1.exon5;Parent=MS.gene026734.t1 |
| chr4.1 | CDS | 85859015 | 85859159 | 85859015 | ID=cds.MS.gene026734.t1;Parent=MS.gene026734.t1 |
| chr4.1 | exon | 85859270 | 85859341 | 85859270 | ID=MS.gene026734.t1.exon6;Parent=MS.gene026734.t1 |
| chr4.1 | CDS | 85859270 | 85859341 | 85859270 | ID=cds.MS.gene026734.t1;Parent=MS.gene026734.t1 |
| chr4.1 | exon | 85859824 | 85859932 | 85859824 | ID=MS.gene026734.t1.exon7;Parent=MS.gene026734.t1 |
| chr4.1 | CDS | 85859824 | 85859932 | 85859824 | ID=cds.MS.gene026734.t1;Parent=MS.gene026734.t1 |
| chr4.1 | exon | 85860738 | 85860839 | 85860738 | ID=MS.gene026734.t1.exon8;Parent=MS.gene026734.t1 |
| chr4.1 | CDS | 85860738 | 85860839 | 85860738 | ID=cds.MS.gene026734.t1;Parent=MS.gene026734.t1 |
| Gene Sequence |
| Protein sequence |
