Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80725.t1 | XP_003613181.2 | 98.4 | 246 | 4 | 0 | 1 | 246 | 17 | 262 | 1.20E-136 | 495.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80725.t1 | Q3ED65 | 69.2 | 237 | 71 | 1 | 10 | 244 | 23 | 259 | 1.2e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80725.t1 | G7K058 | 98.4 | 246 | 4 | 0 | 1 | 246 | 17 | 262 | 8.7e-137 | 495.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051228 | MS.gene80725 | 0.806937 | 6.46E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene80725 | 0.817422 | 3.32E-52 | -1.69E-46 |
| MS.gene055636 | MS.gene80725 | 0.858181 | 9.83E-63 | -1.69E-46 |
| MS.gene055638 | MS.gene80725 | 0.821964 | 3.05E-53 | -1.69E-46 |
| MS.gene055647 | MS.gene80725 | 0.836965 | 6.87E-57 | -1.69E-46 |
| MS.gene05592 | MS.gene80725 | 0.800763 | 1.24E-48 | -1.69E-46 |
| MS.gene057011 | MS.gene80725 | 0.805771 | 1.14E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene80725 | 0.814304 | 1.65E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene80725 | 0.805702 | 1.17E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene80725 | 0.821276 | 4.40E-53 | -1.69E-46 |
| MS.gene060818 | MS.gene80725 | 0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene80725 | 0.812635 | 3.84E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene80725 | 0.822909 | 1.84E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034104 | MS.gene80725 | PPI |
| MS.gene61163 | MS.gene80725 | PPI |
| MS.gene80725 | MS.gene060842 | PPI |
| MS.gene026734 | MS.gene80725 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80725.t1 | MTR_5g033700 | 98.374 | 246 | 4 | 0 | 1 | 246 | 17 | 262 | 0.0 | 501 |
| MS.gene80725.t1 | MTR_4g009880 | 28.632 | 234 | 148 | 4 | 25 | 239 | 49 | 282 | 6.66e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80725.t1 | AT1G23360 | 69.198 | 237 | 71 | 1 | 10 | 244 | 23 | 259 | 8.01e-120 | 342 |
| MS.gene80725.t1 | AT1G23360 | 64.557 | 158 | 54 | 1 | 89 | 244 | 1 | 158 | 2.70e-70 | 213 |
| MS.gene80725.t1 | AT1G23360 | 64.557 | 158 | 54 | 1 | 89 | 244 | 1 | 158 | 2.70e-70 | 213 |
| MS.gene80725.t1 | AT5G57300 | 27.731 | 238 | 148 | 4 | 25 | 241 | 48 | 282 | 2.19e-21 | 90.9 |
| MS.gene80725.t1 | AT5G57300 | 27.731 | 238 | 148 | 4 | 25 | 241 | 48 | 282 | 2.19e-21 | 90.9 |
| MS.gene80725.t1 | AT5G57300 | 27.731 | 238 | 148 | 4 | 25 | 241 | 48 | 282 | 2.19e-21 | 90.9 |
| MS.gene80725.t1 | AT5G57300 | 27.731 | 238 | 148 | 4 | 25 | 241 | 48 | 282 | 2.19e-21 | 90.9 |
Find 54 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCTGTAGCCTCTGTTTA+TGG | 0.147828 | 5.4:-23754806 | MS.gene80725:CDS |
| GCTACTAACTTCTTCATTTA+CGG | 0.259722 | 5.4:-23755019 | MS.gene80725:intron |
| GCTTGGGTCAGCACCGGATT+TGG | 0.335534 | 5.4:-23756480 | MS.gene80725:CDS |
| GGAAGCGAATGGCTGTTTCT+TGG | 0.344170 | 5.4:-23756459 | MS.gene80725:CDS |
| GCTGAATGATTTGCTGAGCT+TGG | 0.375216 | 5.4:-23756497 | MS.gene80725:CDS |
| GAGAAACTTGCTTTAGAAGT+AGG | 0.398667 | 5.4:-23754542 | MS.gene80725:CDS |
| CAGCCATTCGCTTCCAAATC+CGG | 0.402703 | 5.4:+23756467 | None:intergenic |
| TGGAGGCCTCATGGGGTGCT+TGG | 0.422234 | 5.4:-23754489 | MS.gene80725:CDS |
| CTGTGATGCAGGGAAGGAAT+TGG | 0.426333 | 5.4:-23754564 | MS.gene80725:intron |
| TTGGTTTGATGCAATCACTA+TGG | 0.429752 | 5.4:-23755231 | MS.gene80725:CDS |
| GAGATCGGTGGAGGCCTCAT+GGG | 0.444479 | 5.4:-23754497 | MS.gene80725:CDS |
| GGGCGCACGTTATCATAAAC+AGG | 0.455679 | 5.4:+23756599 | None:intergenic |
| CTGAATGATTTGCTGAGCTT+GGG | 0.456434 | 5.4:-23756496 | MS.gene80725:CDS |
| ATGGAAGTCGGTCGGAATGA+AGG | 0.467617 | 5.4:+23756665 | None:intergenic |
| AGAAGAGCTTGCCTTGCCAT+TGG | 0.469398 | 5.4:+23756264 | None:intergenic |
| TTTCTCGAAGGAGCAACTAA+TGG | 0.469639 | 5.4:-23755541 | MS.gene80725:CDS |
| TGCTGAGCTTGGGTCAGCAC+CGG | 0.478547 | 5.4:-23756486 | MS.gene80725:CDS |
| AGAGCTTGCCTTGCCATTGG+AGG | 0.480628 | 5.4:+23756267 | None:intergenic |
| GTACATCCTAGGTGGGTTGA+AGG | 0.482364 | 5.4:-23755284 | MS.gene80725:intron |
| TTGTGTTGCAGAGATGTTCC+CGG | 0.492822 | 5.4:-23756702 | None:intergenic |
| TGAGATCGGTGGAGGCCTCA+TGG | 0.504020 | 5.4:-23754498 | MS.gene80725:CDS |
| AGACCATAAACAGAGGCTAC+AGG | 0.514026 | 5.4:+23754803 | None:intergenic |
| TTGGATGTCTGCTGTGGAAG+TGG | 0.515717 | 5.4:-23756322 | MS.gene80725:CDS |
| AAGGATAAGGAGCAACCGCC+GGG | 0.515863 | 5.4:+23756684 | None:intergenic |
| TGGTTTGATGCAATCACTAT+GGG | 0.517163 | 5.4:-23755230 | MS.gene80725:CDS |
| GAAAAGTGCCTGTCGGTCGT+TGG | 0.521169 | 5.4:+23756634 | None:intergenic |
| TCAAACCAAGCATCAGAAAA+CGG | 0.523537 | 5.4:+23755245 | None:intergenic |
| TCGCTGCTCCAACGACCGAC+AGG | 0.526243 | 5.4:-23756642 | MS.gene80725:CDS |
| CGACATTATGAGATCGGTGG+AGG | 0.533048 | 5.4:-23754506 | MS.gene80725:CDS |
| GTCGGTCGGAATGAAGGATA+AGG | 0.536675 | 5.4:+23756671 | None:intergenic |
| CTTTGAAAGCGATCGTGATG+AGG | 0.543695 | 5.4:+23755515 | None:intergenic |
| GATGCAATCACTATGGGCTA+TGG | 0.547081 | 5.4:-23755224 | MS.gene80725:CDS |
| AACTTTGTTAGACAAGAGAA+AGG | 0.551476 | 5.4:+23756291 | None:intergenic |
| TCTAACAAAGTTGCCTCCAA+TGG | 0.553337 | 5.4:-23756280 | MS.gene80725:CDS |
| GAAGGATAAGGAGCAACCGC+CGG | 0.567694 | 5.4:+23756683 | None:intergenic |
| TGATAAGCGTAAAGCCATGC+AGG | 0.572450 | 5.4:-23755186 | MS.gene80725:CDS |
| TCGGTCGTTGGAGCAGCGAA+TGG | 0.583040 | 5.4:+23756646 | None:intergenic |
| CACACGTAAAATTTCCTGCA+TGG | 0.586402 | 5.4:+23755172 | None:intergenic |
| ACTGCTCGACATTATGAGAT+CGG | 0.594791 | 5.4:-23754512 | MS.gene80725:CDS |
| GACCATAAACAGAGGCTACA+GGG | 0.598859 | 5.4:+23754804 | None:intergenic |
| GATTGGTCTTGATTTCTCGA+AGG | 0.615322 | 5.4:-23755553 | MS.gene80725:CDS |
| CAAAGTTGCCTCCAATGGCA+AGG | 0.615328 | 5.4:-23756275 | MS.gene80725:intron |
| GCACCGGATTTGGAAGCGAA+TGG | 0.615773 | 5.4:-23756470 | MS.gene80725:CDS |
| AGATCGGTGGAGGCCTCATG+GGG | 0.618606 | 5.4:-23754496 | MS.gene80725:CDS |
| TTGGAGCAGCGAATGGAAGT+CGG | 0.628117 | 5.4:+23756653 | None:intergenic |
| CGTGTATTGGATGTCTGCTG+TGG | 0.636133 | 5.4:-23756328 | MS.gene80725:CDS |
| CACAGCAGACATCCAATACA+CGG | 0.640805 | 5.4:+23756329 | None:intergenic |
| TGCGGTTGAAAAGTGCCTGT+CGG | 0.646807 | 5.4:+23756627 | None:intergenic |
| AGCAGCGAATGGAAGTCGGT+CGG | 0.656578 | 5.4:+23756657 | None:intergenic |
| GCTCGACATTATGAGATCGG+TGG | 0.666601 | 5.4:-23754509 | MS.gene80725:CDS |
| ATCTGAAAGACCATAAACAG+AGG | 0.701070 | 5.4:+23754796 | None:intergenic |
| TAGCTACCAAGCACCCCATG+AGG | 0.708176 | 5.4:+23754483 | None:intergenic |
| TATCATAAACAGGAGCAATG+CGG | 0.759058 | 5.4:+23756609 | None:intergenic |
| TGTTGCAGAGATGTTCCCGG+CGG | 0.792432 | 5.4:-23756699 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTAATTGTTTAAATG+CGG | + | chr5.4:23755445-23755464 | None:intergenic | 15.0% |
| !! | ATGATTGATTAAATGATTAA+CGG | + | chr5.4:23755752-23755771 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATAGTAGTAAG+AGG | - | chr5.4:23756507-23756526 | MS.gene80725:intron | 15.0% |
| !! | ATAATATTGCAAAAATGAGT+TGG | + | chr5.4:23754963-23754982 | None:intergenic | 20.0% |
| !! | ATCATTTCATTCTATTCTAA+TGG | - | chr5.4:23754757-23754776 | MS.gene80725:CDS | 20.0% |
| !!! | TCAATAAGAGAATTTTTAAC+AGG | - | chr5.4:23756412-23756431 | MS.gene80725:intron | 20.0% |
| !!! | TCATTTTTGCAATATTATGT+TGG | - | chr5.4:23754965-23754984 | MS.gene80725:intron | 20.0% |
| !!! | TTACTGTTTTAGCTTTATAA+CGG | + | chr5.4:23755791-23755810 | None:intergenic | 20.0% |
| ! | AAAATAGTTAAAGAGAGACA+TGG | - | chr5.4:23754998-23755017 | MS.gene80725:intron | 25.0% |
| ! | AAGTTGTACATTAGTATCAT+TGG | - | chr5.4:23755837-23755856 | MS.gene80725:intron | 25.0% |
| ! | ATGCTTTATAAACTCTACAT+AGG | + | chr5.4:23755217-23755236 | None:intergenic | 25.0% |
| ! | CTATTTAGTGTTTATAAAGC+TGG | - | chr5.4:23755386-23755405 | MS.gene80725:intron | 25.0% |
| ! | GTTAATGCATCTTGAATAAT+TGG | + | chr5.4:23755470-23755489 | None:intergenic | 25.0% |
| ! | TTATTCAAGATGCATTAACA+TGG | - | chr5.4:23755471-23755490 | MS.gene80725:intron | 25.0% |
| ! | TTGATTGTTGTGTTTGAATT+TGG | - | chr5.4:23754791-23754810 | MS.gene80725:CDS | 25.0% |
| ! | TTTAATCATTTGTACATCCT+AGG | - | chr5.4:23755869-23755888 | MS.gene80725:intron | 25.0% |
| !! | CAACTCAATAATGTATTGAT+TGG | - | chr5.4:23756040-23756059 | MS.gene80725:intron | 25.0% |
| !! | CAGCTTTATAAACACTAAAT+AGG | + | chr5.4:23755388-23755407 | None:intergenic | 25.0% |
| !!! | CATTGCTTTTATTAAAGTCA+AGG | + | chr5.4:23756124-23756143 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCAATTGAACTGA+AGG | - | chr5.4:23756435-23756454 | MS.gene80725:intron | 25.0% |
| AAACCAAACTTATAAGGTGA+TGG | + | chr5.4:23755246-23755265 | None:intergenic | 30.0% | |
| AACTTTGTTAGACAAGAGAA+AGG | + | chr5.4:23754876-23754895 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAGAAGAA+GGG | + | chr5.4:23754588-23754607 | None:intergenic | 30.0% | |
| AATTAATGTGTTGTGAAGTG+TGG | - | chr5.4:23755035-23755054 | MS.gene80725:CDS | 30.0% | |
| ACAAGACAACAAATCCTTTA+TGG | - | chr5.4:23755500-23755519 | MS.gene80725:CDS | 30.0% | |
| ATTCAGCTGCAACAATTAAA+AGG | + | chr5.4:23754654-23754673 | None:intergenic | 30.0% | |
| CAATAAAATTGAGTGAGCAT+GGG | - | chr5.4:23755680-23755699 | MS.gene80725:intron | 30.0% | |
| CGTAAAACATATATGTTGCA+AGG | + | chr5.4:23756176-23756195 | None:intergenic | 30.0% | |
| GCTACTAACTTCTTCATTTA+CGG | - | chr5.4:23756145-23756164 | MS.gene80725:intron | 30.0% | |
| GGAATAAAATCAGGTCTATT+GGG | - | chr5.4:23755056-23755075 | MS.gene80725:CDS | 30.0% | |
| TCAATAAAATTGAGTGAGCA+TGG | - | chr5.4:23755679-23755698 | MS.gene80725:intron | 30.0% | |
| TCCATAAACAATGTCCATAA+AGG | + | chr5.4:23755517-23755536 | None:intergenic | 30.0% | |
| TCCTTTATGGACATTGTTTA+TGG | - | chr5.4:23755513-23755532 | MS.gene80725:CDS | 30.0% | |
| TGGAATAAAATCAGGTCTAT+TGG | - | chr5.4:23755055-23755074 | MS.gene80725:CDS | 30.0% | |
| TGTACATTAGTATCATTGGT+AGG | - | chr5.4:23755841-23755860 | MS.gene80725:intron | 30.0% | |
| TGTACCAATTTATGCTTGAT+CGG | + | chr5.4:23756468-23756487 | None:intergenic | 30.0% | |
| TTATCCGATCAAGCATAAAT+TGG | - | chr5.4:23756461-23756480 | MS.gene80725:CDS | 30.0% | |
| ! | ATTTGGTAACAGAGCAAAAA+AGG | - | chr5.4:23754808-23754827 | MS.gene80725:CDS | 30.0% |
| ! | TTTGGTAACAGAGCAAAAAA+GGG | - | chr5.4:23754809-23754828 | MS.gene80725:CDS | 30.0% |
| !! | CACAGGAGTATTATTAAGTT+AGG | + | chr5.4:23756585-23756604 | None:intergenic | 30.0% |
| AACCAACCCAAATTCTCTAA+CGG | - | chr5.4:23755296-23755315 | MS.gene80725:intron | 35.0% | |
| AATAATACTCCTGTGATGCA+GGG | - | chr5.4:23756590-23756609 | MS.gene80725:intron | 35.0% | |
| AATCATTTGTACATCCTAGG+TGG | - | chr5.4:23755872-23755891 | MS.gene80725:intron | 35.0% | |
| AGCCCAAAAGATTAACAGAA+CGG | + | chr5.4:23755585-23755604 | None:intergenic | 35.0% | |
| ATCATTTGTACATCCTAGGT+GGG | - | chr5.4:23755873-23755892 | MS.gene80725:intron | 35.0% | |
| ATCTGAAAGACCATAAACAG+AGG | + | chr5.4:23756371-23756390 | None:intergenic | 35.0% | |
| CTTTCGTCTTTCTGATTCTT+TGG | - | chr5.4:23756275-23756294 | MS.gene80725:intron | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | chr5.4:23754589-23754608 | None:intergenic | 35.0% | |
| GTGAAGTGTGGAATAAAATC+AGG | - | chr5.4:23755047-23755066 | MS.gene80725:CDS | 35.0% | |
| TAATAATACTCCTGTGATGC+AGG | - | chr5.4:23756589-23756608 | MS.gene80725:intron | 35.0% | |
| TATCATAAACAGGAGCAATG+CGG | + | chr5.4:23754558-23754577 | None:intergenic | 35.0% | |
| TCAAACCAAGCATCAGAAAA+CGG | + | chr5.4:23755922-23755941 | None:intergenic | 35.0% | |
| TCAGGCTGTTATCTAATTTC+AGG | + | chr5.4:23755721-23755740 | None:intergenic | 35.0% | |
| TGGTTTGATGCAATCACTAT+GGG | - | chr5.4:23755934-23755953 | MS.gene80725:intron | 35.0% | |
| TTTACGCTGCTTAAGTTTAG+AGG | - | chr5.4:23756190-23756209 | MS.gene80725:intron | 35.0% | |
| ! | CACCGTTCTGTTAATCTTTT+GGG | - | chr5.4:23755580-23755599 | MS.gene80725:intron | 35.0% |
| ! | CACCTTATAAGTTTGGTTTC+CGG | - | chr5.4:23755247-23755266 | MS.gene80725:CDS | 35.0% |
| ! | GCAACAATTAAAAGGTGTGA+AGG | + | chr5.4:23754646-23754665 | None:intergenic | 35.0% |
| ! | TCACCGTTCTGTTAATCTTT+TGG | - | chr5.4:23755579-23755598 | MS.gene80725:intron | 35.0% |
| ! | TTGGTTTGATGCAATCACTA+TGG | - | chr5.4:23755933-23755952 | MS.gene80725:intron | 35.0% |
| !! | GAGAAACTTGCTTTAGAAGT+AGG | - | chr5.4:23756622-23756641 | MS.gene80725:CDS | 35.0% |
| !! | TAGCTTTATAACGGAGAACA+TGG | + | chr5.4:23755782-23755801 | None:intergenic | 35.0% |
| !!! | CATGCTACTTTTTACTTTCC+AGG | - | chr5.4:23756083-23756102 | MS.gene80725:intron | 35.0% |
| AAAAAAGGGTGACCGTGTAT+TGG | - | chr5.4:23754823-23754842 | MS.gene80725:CDS | 40.0% | |
| AAATAGGCCCATGTCTCTAT+GGG | + | chr5.4:23755372-23755391 | None:intergenic | 40.0% | |
| ACTGCTCGACATTATGAGAT+CGG | - | chr5.4:23756652-23756671 | MS.gene80725:CDS | 40.0% | |
| AGTTAAAGAGAGACATGGTG+AGG | - | chr5.4:23755003-23755022 | MS.gene80725:intron | 40.0% | |
| CACACGTAAAATTTCCTGCA+TGG | + | chr5.4:23755995-23756014 | None:intergenic | 40.0% | |
| CAGCCATCACCTTATAAGTT+TGG | - | chr5.4:23755240-23755259 | MS.gene80725:CDS | 40.0% | |
| CCCAAATTCTCTAACGGTAT+CGG | - | chr5.4:23755302-23755321 | MS.gene80725:intron | 40.0% | |
| CCGATACCGTTAGAGAATTT+GGG | + | chr5.4:23755305-23755324 | None:intergenic | 40.0% | |
| CTAACTCCATTTCTCGTTCT+AGG | - | chr5.4:23756312-23756331 | MS.gene80725:CDS | 40.0% | |
| GACCGGAAACCAAACTTATA+AGG | + | chr5.4:23755252-23755271 | None:intergenic | 40.0% | |
| TAAATAGGCCCATGTCTCTA+TGG | + | chr5.4:23755373-23755392 | None:intergenic | 40.0% | |
| TACCGTTAGAGAATTTGGGT+TGG | + | chr5.4:23755301-23755320 | None:intergenic | 40.0% | |
| TCCGATACCGTTAGAGAATT+TGG | + | chr5.4:23755306-23755325 | None:intergenic | 40.0% | |
| TCTAACAAAGTTGCCTCCAA+TGG | - | chr5.4:23754884-23754903 | MS.gene80725:intron | 40.0% | |
| TTAACTCAACCTAACGAGAC+CGG | + | chr5.4:23755269-23755288 | None:intergenic | 40.0% | |
| TTTCTCGAAGGAGCAACTAA+TGG | - | chr5.4:23755623-23755642 | MS.gene80725:intron | 40.0% | |
| ! | CAAACTTATAAGGTGATGGC+TGG | + | chr5.4:23755242-23755261 | None:intergenic | 40.0% |
| ! | TGATTAACGGAGTACTCTTC+AGG | + | chr5.4:23755739-23755758 | None:intergenic | 40.0% |
| ! | TTCTGATTCTTTGGTGTGAG+CGG | - | chr5.4:23756284-23756303 | MS.gene80725:CDS | 40.0% |
| !! | CCAACGTTTTGGGTATGAAA+GGG | - | chr5.4:23755327-23755346 | MS.gene80725:intron | 40.0% |
| !! | CTGAATGATTTGCTGAGCTT+GGG | - | chr5.4:23754668-23754687 | MS.gene80725:intron | 40.0% |
| !! | GATTGGTCTTGATTTCTCGA+AGG | - | chr5.4:23755611-23755630 | MS.gene80725:intron | 40.0% |
| !! | TCCAACGTTTTGGGTATGAA+AGG | - | chr5.4:23755326-23755345 | MS.gene80725:intron | 40.0% |
| AATTTAGTCCCACATTCCCC+TGG | - | chr5.4:23755183-23755202 | MS.gene80725:CDS | 45.0% | |
| AGACCATAAACAGAGGCTAC+AGG | + | chr5.4:23756364-23756383 | None:intergenic | 45.0% | |
| AGGATAGATGCTGTAGAACC+TGG | + | chr5.4:23756104-23756123 | None:intergenic | 45.0% | |
| AGTTGAGATACACCAGCTAC+CGG | + | chr5.4:23756025-23756044 | None:intergenic | 45.0% | |
| ATTGCAGTCTCCAACACGTT+CGG | - | chr5.4:23755139-23755158 | MS.gene80725:intron | 45.0% | |
| CACAGCAGACATCCAATACA+CGG | + | chr5.4:23754838-23754857 | None:intergenic | 45.0% | |
| CACATTGCCCATAGAGACAT+GGG | - | chr5.4:23755362-23755381 | MS.gene80725:intron | 45.0% | |
| CCCTTTCATACCCAAAACGT+TGG | + | chr5.4:23755330-23755349 | None:intergenic | 45.0% | |
| CGTGTTGGAGACTGCAATAA+AGG | + | chr5.4:23755137-23755156 | None:intergenic | 45.0% | |
| CTACATAGGTCGTATCTCCA+GGG | + | chr5.4:23755203-23755222 | None:intergenic | 45.0% | |
| GACCATAAACAGAGGCTACA+GGG | + | chr5.4:23756363-23756382 | None:intergenic | 45.0% | |
| GGAGAAAGAAGACTAGAGAG+AGG | + | chr5.4:23754625-23754644 | None:intergenic | 45.0% | |
| GGGCTTGAGTACAATGAATG+CGG | + | chr5.4:23755086-23755105 | None:intergenic | 45.0% | |
| TACATAGGTCGTATCTCCAG+GGG | + | chr5.4:23755202-23755221 | None:intergenic | 45.0% | |
| TCCACTCCTAGAACGAGAAA+TGG | + | chr5.4:23756321-23756340 | None:intergenic | 45.0% | |
| TCTACATAGGTCGTATCTCC+AGG | + | chr5.4:23755204-23755223 | None:intergenic | 45.0% | |
| TGATAAGCGTAAAGCCATGC+AGG | - | chr5.4:23755978-23755997 | MS.gene80725:intron | 45.0% | |
| ! | ATTTTACGTGTGCTGAAGCC+CGG | - | chr5.4:23756003-23756022 | MS.gene80725:intron | 45.0% |
| ! | CTGTTAATCTTTTGGGCTGC+AGG | - | chr5.4:23755587-23755606 | MS.gene80725:intron | 45.0% |
| ! | CTTTGAAAGCGATCGTGATG+AGG | + | chr5.4:23755652-23755671 | None:intergenic | 45.0% |
| ! | GATGCAATCACTATGGGCTA+TGG | - | chr5.4:23755940-23755959 | MS.gene80725:intron | 45.0% |
| !! | GCTGAATGATTTGCTGAGCT+TGG | - | chr5.4:23754667-23754686 | MS.gene80725:intron | 45.0% |
| !! | GGTATCGGATCCAACGTTTT+GGG | - | chr5.4:23755317-23755336 | MS.gene80725:intron | 45.0% |
| !! | TCCAACACGTTCGGTGTATT+GGG | - | chr5.4:23755148-23755167 | MS.gene80725:intron | 45.0% |
| !! | TCCATTTCTCGTTCTAGGAG+TGG | - | chr5.4:23756317-23756336 | MS.gene80725:CDS | 45.0% |
| !!! | ACTTGCCGTTTTCTGATGCT+TGG | - | chr5.4:23755914-23755933 | MS.gene80725:intron | 45.0% |
| AAGCCCTAGCTGCCTCATTA+CGG | - | chr5.4:23755100-23755119 | MS.gene80725:intron | 50.0% | |
| ACCCAATACACCGAACGTGT+TGG | + | chr5.4:23755152-23755171 | None:intergenic | 50.0% | |
| ACTCCGTAATGAGGCAGCTA+GGG | + | chr5.4:23755106-23755125 | None:intergenic | 50.0% | |
| AGAAGAGCTTGCCTTGCCAT+TGG | + | chr5.4:23754903-23754922 | None:intergenic | 50.0% | |
| ATACTCCTGTGATGCAGGGA+AGG | - | chr5.4:23756594-23756613 | MS.gene80725:intron | 50.0% | |
| ATGGAAGTCGGTCGGAATGA+AGG | + | chr5.4:23754502-23754521 | None:intergenic | 50.0% | |
| CAAAGTTGCCTCCAATGGCA+AGG | - | chr5.4:23754889-23754908 | MS.gene80725:intron | 50.0% | |
| CAATTCCTTCCCTGCATCAC+AGG | + | chr5.4:23756602-23756621 | None:intergenic | 50.0% | |
| CAGCCATTCGCTTCCAAATC+CGG | + | chr5.4:23754700-23754719 | None:intergenic | 50.0% | |
| CCACATTGCCCATAGAGACA+TGG | - | chr5.4:23755361-23755380 | MS.gene80725:intron | 50.0% | |
| CCATGTCTCTATGGGCAATG+TGG | + | chr5.4:23755364-23755383 | None:intergenic | 50.0% | |
| CGACATTATGAGATCGGTGG+AGG | - | chr5.4:23756658-23756677 | MS.gene80725:CDS | 50.0% | |
| CGTGTATTGGATGTCTGCTG+TGG | - | chr5.4:23754836-23754855 | MS.gene80725:intron | 50.0% | |
| CTGTGATGCAGGGAAGGAAT+TGG | - | chr5.4:23756600-23756619 | MS.gene80725:intron | 50.0% | |
| GCTCGACATTATGAGATCGG+TGG | - | chr5.4:23756655-23756674 | MS.gene80725:CDS | 50.0% | |
| GGGCGCACGTTATCATAAAC+AGG | + | chr5.4:23754568-23754587 | None:intergenic | 50.0% | |
| GTCCCTGTAGCCTCTGTTTA+TGG | - | chr5.4:23756358-23756377 | MS.gene80725:intron | 50.0% | |
| GTCGGTCGGAATGAAGGATA+AGG | + | chr5.4:23754496-23754515 | None:intergenic | 50.0% | |
| GTTGAGATACACCAGCTACC+GGG | + | chr5.4:23756024-23756043 | None:intergenic | 50.0% | |
| TCGTATCTCCAGGGGAATGT+GGG | + | chr5.4:23755194-23755213 | None:intergenic | 50.0% | |
| TTGGAGCAGCGAATGGAAGT+CGG | + | chr5.4:23754514-23754533 | None:intergenic | 50.0% | |
| TTGGATGTCTGCTGTGGAAG+TGG | - | chr5.4:23754842-23754861 | MS.gene80725:intron | 50.0% | |
| ! | GATTCTTTGGTGTGAGCGGA+AGG | - | chr5.4:23756288-23756307 | MS.gene80725:CDS | 50.0% |
| ! | GTTTGGTTTCCGGTCTCGTT+AGG | - | chr5.4:23755257-23755276 | MS.gene80725:CDS | 50.0% |
| ! | TCTTTTGGGCTGCAGGTGAT+TGG | - | chr5.4:23755594-23755613 | MS.gene80725:intron | 50.0% |
| !! | CGGTATCGGATCCAACGTTT+TGG | - | chr5.4:23755316-23755335 | MS.gene80725:intron | 50.0% |
| !! | CTCCAACACGTTCGGTGTAT+TGG | - | chr5.4:23755147-23755166 | MS.gene80725:intron | 50.0% |
| !! | GGAAGCGAATGGCTGTTTCT+TGG | - | chr5.4:23754705-23754724 | MS.gene80725:intron | 50.0% |
| !! | GTACATCCTAGGTGGGTTGA+AGG | - | chr5.4:23755880-23755899 | MS.gene80725:intron | 50.0% |
| !! | GTTCGGTGTATTGGGTGTGA+AGG | - | chr5.4:23755156-23755175 | MS.gene80725:intron | 50.0% |
| !! | TGCGGTTGAAAAGTGCCTGT+CGG | + | chr5.4:23754540-23754559 | None:intergenic | 50.0% |
| AAGGATAAGGAGCAACCGCC+GGG | + | chr5.4:23754483-23754502 | None:intergenic | 55.0% | |
| AGAGCTTGCCTTGCCATTGG+AGG | + | chr5.4:23754900-23754919 | None:intergenic | 55.0% | |
| AGCAGCGAATGGAAGTCGGT+CGG | + | chr5.4:23754510-23754529 | None:intergenic | 55.0% | |
| AGCTGCCTCATTACGGAGTC+TGG | - | chr5.4:23755107-23755126 | MS.gene80725:intron | 55.0% | |
| GAAGGATAAGGAGCAACCGC+CGG | + | chr5.4:23754484-23754503 | None:intergenic | 55.0% | |
| GACTCCGTAATGAGGCAGCT+AGG | + | chr5.4:23755107-23755126 | None:intergenic | 55.0% | |
| GCAACCCAGACTCCGTAATG+AGG | + | chr5.4:23755115-23755134 | None:intergenic | 55.0% | |
| GCACCGGATTTGGAAGCGAA+TGG | - | chr5.4:23754694-23754713 | MS.gene80725:intron | 55.0% | |
| GCATCACCTTCAACCCACCT+AGG | + | chr5.4:23755889-23755908 | None:intergenic | 55.0% | |
| GCTGCCTCATTACGGAGTCT+GGG | - | chr5.4:23755108-23755127 | MS.gene80725:intron | 55.0% | |
| GTCGTATCTCCAGGGGAATG+TGG | + | chr5.4:23755195-23755214 | None:intergenic | 55.0% | |
| TAGCTACCAAGCACCCCATG+AGG | + | chr5.4:23756684-23756703 | None:intergenic | 55.0% | |
| !! | GAAAAGTGCCTGTCGGTCGT+TGG | + | chr5.4:23754533-23754552 | None:intergenic | 55.0% |
| AGATCGGTGGAGGCCTCATG+GGG | - | chr5.4:23756668-23756687 | MS.gene80725:CDS | 60.0% | |
| GAGATCGGTGGAGGCCTCAT+GGG | - | chr5.4:23756667-23756686 | MS.gene80725:CDS | 60.0% | |
| TCGGTCGTTGGAGCAGCGAA+TGG | + | chr5.4:23754521-23754540 | None:intergenic | 60.0% | |
| TGAGATCGGTGGAGGCCTCA+TGG | - | chr5.4:23756666-23756685 | MS.gene80725:CDS | 60.0% | |
| TGCTGAGCTTGGGTCAGCAC+CGG | - | chr5.4:23754678-23754697 | MS.gene80725:intron | 60.0% | |
| ! | GCTTGGGTCAGCACCGGATT+TGG | - | chr5.4:23754684-23754703 | MS.gene80725:intron | 60.0% |
| GTGTGCTGAAGCCCGGTAGC+TGG | - | chr5.4:23756010-23756029 | MS.gene80725:intron | 65.0% | |
| TCGCTGCTCCAACGACCGAC+AGG | - | chr5.4:23754522-23754541 | MS.gene80725:CDS | 65.0% | |
| ! | TGGAGGCCTCATGGGGTGCT+TGG | - | chr5.4:23756675-23756694 | MS.gene80725:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 23754475 | 23756711 | 23754475 | ID=MS.gene80725 |
| chr5.4 | mRNA | 23754475 | 23756711 | 23754475 | ID=MS.gene80725.t1;Parent=MS.gene80725 |
| chr5.4 | exon | 23756607 | 23756711 | 23756607 | ID=MS.gene80725.t1.exon1;Parent=MS.gene80725.t1 |
| chr5.4 | CDS | 23756607 | 23756711 | 23756607 | ID=cds.MS.gene80725.t1;Parent=MS.gene80725.t1 |
| chr5.4 | exon | 23756454 | 23756518 | 23756454 | ID=MS.gene80725.t1.exon2;Parent=MS.gene80725.t1 |
| chr5.4 | CDS | 23756454 | 23756518 | 23756454 | ID=cds.MS.gene80725.t1;Parent=MS.gene80725.t1 |
| chr5.4 | exon | 23756276 | 23756366 | 23756276 | ID=MS.gene80725.t1.exon3;Parent=MS.gene80725.t1 |
| chr5.4 | CDS | 23756276 | 23756366 | 23756276 | ID=cds.MS.gene80725.t1;Parent=MS.gene80725.t1 |
| chr5.4 | exon | 23755495 | 23755577 | 23755495 | ID=MS.gene80725.t1.exon4;Parent=MS.gene80725.t1 |
| chr5.4 | CDS | 23755495 | 23755577 | 23755495 | ID=cds.MS.gene80725.t1;Parent=MS.gene80725.t1 |
| chr5.4 | exon | 23755162 | 23755295 | 23755162 | ID=MS.gene80725.t1.exon5;Parent=MS.gene80725.t1 |
| chr5.4 | CDS | 23755162 | 23755295 | 23755162 | ID=cds.MS.gene80725.t1;Parent=MS.gene80725.t1 |
| chr5.4 | exon | 23755020 | 23755081 | 23755020 | ID=MS.gene80725.t1.exon6;Parent=MS.gene80725.t1 |
| chr5.4 | CDS | 23755020 | 23755081 | 23755020 | ID=cds.MS.gene80725.t1;Parent=MS.gene80725.t1 |
| chr5.4 | exon | 23754753 | 23754852 | 23754753 | ID=MS.gene80725.t1.exon7;Parent=MS.gene80725.t1 |
| chr5.4 | CDS | 23754753 | 23754852 | 23754753 | ID=cds.MS.gene80725.t1;Parent=MS.gene80725.t1 |
| chr5.4 | exon | 23754475 | 23754575 | 23754475 | ID=MS.gene80725.t1.exon8;Parent=MS.gene80725.t1 |
| chr5.4 | CDS | 23754475 | 23754575 | 23754475 | ID=cds.MS.gene80725.t1;Parent=MS.gene80725.t1 |
| Gene Sequence |
| Protein sequence |
