Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44339.t1 | XP_003613181.2 | 99 | 196 | 2 | 0 | 1 | 196 | 67 | 262 | 6.70E-106 | 393.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44339.t1 | Q3ED65 | 67.3 | 196 | 62 | 1 | 1 | 194 | 64 | 259 | 5.4e-72 | 271.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44339.t1 | G7K058 | 99.0 | 196 | 2 | 0 | 1 | 196 | 67 | 262 | 4.8e-106 | 393.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene44339 | 0.857409 | 1.66E-62 | -1.69E-46 |
| MS.gene049285 | MS.gene44339 | 0.844868 | 5.79E-59 | -1.69E-46 |
| MS.gene049320 | MS.gene44339 | 0.81821 | 2.21E-52 | -1.69E-46 |
| MS.gene049425 | MS.gene44339 | -0.803605 | 3.22E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene44339 | 0.841121 | 5.76E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene44339 | 0.838226 | 3.26E-57 | -1.69E-46 |
| MS.gene050333 | MS.gene44339 | 0.855665 | 5.42E-62 | -1.69E-46 |
| MS.gene050353 | MS.gene44339 | -0.812789 | 3.55E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene44339 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene050475 | MS.gene44339 | -0.811632 | 6.35E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene44339 | 0.80423 | 2.39E-49 | -1.69E-46 |
| MS.gene050518 | MS.gene44339 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene050541 | MS.gene44339 | -0.807017 | 6.21E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene44339 | 0.820648 | 6.14E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene44339 | 0.803812 | 2.91E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene44339 | 0.835744 | 1.40E-56 | -1.69E-46 |
| MS.gene050770 | MS.gene44339 | 0.838971 | 2.09E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene44339 | 0.825665 | 4.14E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene44339 | 0.850734 | 1.40E-60 | -1.69E-46 |
| MS.gene051434 | MS.gene44339 | 0.843916 | 1.04E-58 | -1.69E-46 |
| MS.gene051694 | MS.gene44339 | 0.818121 | 2.31E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene44339 | 0.841887 | 3.62E-58 | -1.69E-46 |
| MS.gene051858 | MS.gene44339 | 0.848371 | 6.40E-60 | -1.69E-46 |
| MS.gene051949 | MS.gene44339 | 0.813004 | 3.19E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene44339 | 0.831692 | 1.45E-55 | -1.69E-46 |
| MS.gene052290 | MS.gene44339 | 0.80499 | 1.66E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene44339 | 0.877962 | 4.12E-69 | -1.69E-46 |
| MS.gene052870 | MS.gene44339 | 0.829207 | 5.86E-55 | -1.69E-46 |
| MS.gene052872 | MS.gene44339 | 0.824751 | 6.81E-54 | -1.69E-46 |
| MS.gene052916 | MS.gene44339 | 0.821128 | 4.76E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene44339 | 0.816631 | 5.01E-52 | -1.69E-46 |
| MS.gene053104 | MS.gene44339 | 0.814356 | 1.61E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene44339 | 0.805316 | 1.42E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene44339 | 0.808616 | 2.84E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene44339 | 0.805956 | 1.04E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene44339 | 0.839279 | 1.74E-57 | -1.69E-46 |
| MS.gene053384 | MS.gene44339 | 0.81241 | 4.30E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene44339 | -0.81837 | 2.03E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene44339 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene44339 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene44339 | 0.844861 | 5.81E-59 | -1.69E-46 |
| MS.gene054802 | MS.gene44339 | 0.805754 | 1.15E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene44339 | 0.803776 | 2.97E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene44339 | 0.808591 | 2.87E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene44339 | 0.806259 | 8.97E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene44339 | 0.807315 | 5.37E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene44339 | 0.800679 | 1.29E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene44339 | 0.800856 | 1.18E-48 | -1.69E-46 |
| MS.gene055397 | MS.gene44339 | 0.835494 | 1.62E-56 | -1.69E-46 |
| MS.gene055499 | MS.gene44339 | 0.824819 | 6.56E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene44339 | 0.819801 | 9.60E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene44339 | 0.80716 | 5.79E-50 | -1.69E-46 |
| MS.gene055636 | MS.gene44339 | 0.865686 | 4.93E-65 | -1.69E-46 |
| MS.gene055638 | MS.gene44339 | 0.86999 | 2.05E-66 | -1.69E-46 |
| MS.gene055647 | MS.gene44339 | 0.821292 | 4.36E-53 | -1.69E-46 |
| MS.gene055722 | MS.gene44339 | 0.811407 | 7.11E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene44339 | 0.846678 | 1.87E-59 | -1.69E-46 |
| MS.gene055941 | MS.gene44339 | 0.81802 | 2.44E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene44339 | 0.806414 | 8.32E-50 | -1.69E-46 |
| MS.gene056549 | MS.gene44339 | 0.810814 | 9.56E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene44339 | 0.830308 | 3.16E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene44339 | 0.841166 | 5.60E-58 | -1.69E-46 |
| MS.gene057331 | MS.gene44339 | 0.802873 | 4.56E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene44339 | 0.820561 | 6.43E-53 | -1.69E-46 |
| MS.gene057926 | MS.gene44339 | 0.835213 | 1.91E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene44339 | 0.81705 | 4.03E-52 | -1.69E-46 |
| MS.gene058723 | MS.gene44339 | 0.802542 | 5.34E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene44339 | 0.852529 | 4.35E-61 | -1.69E-46 |
| MS.gene058840 | MS.gene44339 | -0.824935 | 6.16E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene44339 | 0.814313 | 1.64E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene44339 | 0.856963 | 2.25E-62 | -1.69E-46 |
| MS.gene05913 | MS.gene44339 | 0.814393 | 1.58E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene44339 | 0.802105 | 6.57E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene44339 | 0.826528 | 2.58E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene44339 | 0.83351 | 5.12E-56 | -1.69E-46 |
| MS.gene059711 | MS.gene44339 | 0.804927 | 1.71E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene44339 | 0.829817 | 4.16E-55 | -1.69E-46 |
| MS.gene059902 | MS.gene44339 | 0.845816 | 3.21E-59 | -1.69E-46 |
| MS.gene059960 | MS.gene44339 | 0.856394 | 3.32E-62 | -1.69E-46 |
| MS.gene060193 | MS.gene44339 | 0.809585 | 1.76E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene44339 | 0.81285 | 3.45E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene44339 | 0.831528 | 1.59E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene44339 | 0.806984 | 6.31E-50 | -1.69E-46 |
| MS.gene061134 | MS.gene44339 | 0.82806 | 1.11E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene44339 | 0.821819 | 3.30E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene44339 | 0.858652 | 7.11E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060842 | MS.gene44339 | PPI |
| MS.gene026734 | MS.gene44339 | PPI |
| MS.gene61163 | MS.gene44339 | PPI |
| MS.gene034104 | MS.gene44339 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44339.t1 | MTR_5g033700 | 98.980 | 196 | 2 | 0 | 1 | 196 | 67 | 262 | 5.02e-142 | 396 |
| MS.gene44339.t1 | MTR_4g009880 | 25.728 | 206 | 134 | 4 | 3 | 189 | 77 | 282 | 3.83e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44339.t1 | AT1G23360 | 67.347 | 196 | 62 | 1 | 1 | 194 | 64 | 259 | 1.81e-93 | 273 |
| MS.gene44339.t1 | AT1G23360 | 64.557 | 158 | 54 | 1 | 39 | 194 | 1 | 158 | 2.28e-71 | 214 |
| MS.gene44339.t1 | AT1G23360 | 64.557 | 158 | 54 | 1 | 39 | 194 | 1 | 158 | 2.28e-71 | 214 |
| MS.gene44339.t1 | AT5G57300 | 26.733 | 202 | 124 | 4 | 11 | 191 | 84 | 282 | 7.03e-14 | 68.9 |
| MS.gene44339.t1 | AT5G57300 | 26.733 | 202 | 124 | 4 | 11 | 191 | 84 | 282 | 7.03e-14 | 68.9 |
| MS.gene44339.t1 | AT5G57300 | 26.733 | 202 | 124 | 4 | 11 | 191 | 84 | 282 | 7.03e-14 | 68.9 |
| MS.gene44339.t1 | AT5G57300 | 26.733 | 202 | 124 | 4 | 11 | 191 | 84 | 282 | 7.03e-14 | 68.9 |
Find 36 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCTGTAGCCTCTGTTTA+TGG | 0.157587 | 5.1:-24617037 | MS.gene44339:CDS |
| GCTACTAACTTCTTCATTTA+CGG | 0.259722 | 5.1:-24617250 | MS.gene44339:intron |
| GGAAGCGAATGGCTGTTTCT+TGG | 0.344170 | 5.1:-24618687 | None:intergenic |
| GAGAAACTTGCTTTAGAAGT+AGG | 0.398667 | 5.1:-24616773 | MS.gene44339:CDS |
| TGGAGGCCTCATGGGGTGCT+TGG | 0.422234 | 5.1:-24616720 | MS.gene44339:CDS |
| CTGTGATGCAGGGAAGGAAT+TGG | 0.426333 | 5.1:-24616795 | MS.gene44339:intron |
| TTGGTTTGATGCAATCACTA+TGG | 0.429752 | 5.1:-24617462 | MS.gene44339:CDS |
| TTTCTCAAAGGAGCAACTAA+TGG | 0.435316 | 5.1:-24617800 | MS.gene44339:CDS |
| GAGATCGGTGGAGGCCTCAT+GGG | 0.444479 | 5.1:-24616728 | MS.gene44339:CDS |
| AGAAGAGCTTGCCTTGCCAT+TGG | 0.469398 | 5.1:+24618492 | None:intergenic |
| AGAGCTTGCCTTGCCATTGG+AGG | 0.480628 | 5.1:+24618495 | None:intergenic |
| GTACATCCTAGGTGGGTTGA+AGG | 0.482364 | 5.1:-24617515 | MS.gene44339:intron |
| TGAGATCGGTGGAGGCCTCA+TGG | 0.504020 | 5.1:-24616729 | MS.gene44339:CDS |
| AGGCCATAAACAGAGGCTAC+AGG | 0.514026 | 5.1:+24617034 | None:intergenic |
| TTGGATGTCTGCTGTGGAAG+TGG | 0.515717 | 5.1:-24618550 | MS.gene44339:CDS |
| TGGTTTGATGCAATCACTAT+GGG | 0.517163 | 5.1:-24617461 | MS.gene44339:CDS |
| TCAAACCAAGCATCAGAAAA+CGG | 0.523537 | 5.1:+24617476 | None:intergenic |
| CGACATTATGAGATCGGTGG+AGG | 0.533048 | 5.1:-24616737 | MS.gene44339:CDS |
| GATGCAATCACTATGGGCTA+TGG | 0.547081 | 5.1:-24617455 | MS.gene44339:CDS |
| AACTTTGTTAGACAAGAGAA+AGG | 0.551476 | 5.1:+24618519 | None:intergenic |
| CTTTGAAAGCGACCGTGATG+AGG | 0.553016 | 5.1:+24617774 | None:intergenic |
| TCTAACAAAGTTGCCTCCAA+TGG | 0.553337 | 5.1:-24618508 | MS.gene44339:CDS |
| TGATAAGCGTAAAGCCATGC+AGG | 0.572450 | 5.1:-24617417 | MS.gene44339:CDS |
| GATATTTGTAGTCATCTGAA+AGG | 0.577823 | 5.1:+24617014 | None:intergenic |
| GGCCATAAACAGAGGCTACA+GGG | 0.586319 | 5.1:+24617035 | None:intergenic |
| CACACGTAAAATTTCCTGCA+TGG | 0.586402 | 5.1:+24617403 | None:intergenic |
| ACTGCTCGACATTATGAGAT+CGG | 0.594791 | 5.1:-24616743 | MS.gene44339:CDS |
| GATTGGTCTTGATTTCTCAA+AGG | 0.599953 | 5.1:-24617812 | MS.gene44339:CDS |
| CAAAGTTGCCTCCAATGGCA+AGG | 0.615328 | 5.1:-24618503 | MS.gene44339:intron |
| AGATCGGTGGAGGCCTCATG+GGG | 0.618606 | 5.1:-24616727 | MS.gene44339:CDS |
| AACTAATGGTCGCCTCATCA+CGG | 0.620553 | 5.1:-24617786 | MS.gene44339:CDS |
| CGTGTATTGGATGTCTGCTG+TGG | 0.636133 | 5.1:-24618556 | MS.gene44339:CDS |
| CACAGCAGACATCCAATACA+CGG | 0.640805 | 5.1:+24618557 | None:intergenic |
| ATCTGAAAGGCCATAAACAG+AGG | 0.659783 | 5.1:+24617027 | None:intergenic |
| GCTCGACATTATGAGATCGG+TGG | 0.666601 | 5.1:-24616740 | MS.gene44339:CDS |
| TAGCTACCAAGCACCCCATG+AGG | 0.708176 | 5.1:+24616714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTATAGTAGTAAG+AGG | - | chr5.1:24618497-24618516 | MS.gene44339:intron | 15.0% |
| !! | ATAATATTGCAAAAATGAGT+TGG | + | chr5.1:24616956-24616975 | None:intergenic | 20.0% |
| !! | ATATAATTAATGTGTTGTGA+AGG | - | chr5.1:24617023-24617042 | MS.gene44339:CDS | 20.0% |
| !! | ATCATTTCATTCTATTCTAA+TGG | - | chr5.1:24616750-24616769 | MS.gene44339:CDS | 20.0% |
| !! | GTTAATGTATCTTGAATAAT+CGG | + | chr5.1:24617431-24617450 | None:intergenic | 20.0% |
| !! | TAAAATAGTTAAATGAGACA+TGG | - | chr5.1:24616990-24617009 | MS.gene44339:CDS | 20.0% |
| !! | TATAATTAATGTGTTGTGAA+GGG | - | chr5.1:24617024-24617043 | MS.gene44339:CDS | 20.0% |
| !! | TTATTCAAGATACATTAACA+TGG | - | chr5.1:24617432-24617451 | MS.gene44339:CDS | 20.0% |
| !!! | TCAATAAGAGAATTTTTAAC+AGG | - | chr5.1:24618402-24618421 | MS.gene44339:intron | 20.0% |
| !!! | TCATTTTTGCAATATTATGT+TGG | - | chr5.1:24616958-24616977 | MS.gene44339:intron | 20.0% |
| !!! | TTACTGTTTTAGCTTTATAA+CGG | + | chr5.1:24617770-24617789 | None:intergenic | 20.0% |
| ! | AAGTTGTACATTAGTATCAT+TGG | - | chr5.1:24617816-24617835 | MS.gene44339:CDS | 25.0% |
| ! | ATCGGTTAATTGTTTAAATG+CGG | + | chr5.1:24617413-24617432 | None:intergenic | 25.0% |
| ! | CAACTCAATAACATATTGAT+TGG | - | chr5.1:24618030-24618049 | MS.gene44339:intron | 25.0% |
| ! | TTGATTGTTGTGTTTGAATT+TGG | - | chr5.1:24616784-24616803 | MS.gene44339:CDS | 25.0% |
| ! | TTTAATCATTTGTACATCCT+AGG | - | chr5.1:24617859-24617878 | MS.gene44339:intron | 25.0% |
| !! | AAGCTTTATAAACACTACAT+AGG | + | chr5.1:24617208-24617227 | None:intergenic | 25.0% |
| !! | ATCATTGGTGATAGTATAAT+AGG | - | chr5.1:24617831-24617850 | MS.gene44339:intron | 25.0% |
| !! | CAGCTTTATAAACACTAAAT+AGG | + | chr5.1:24617356-24617375 | None:intergenic | 25.0% |
| !!! | CATTGCTTTTATTAAAGTCA+AGG | + | chr5.1:24618114-24618133 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCAATTGAACTGA+AGG | - | chr5.1:24618425-24618444 | MS.gene44339:intron | 25.0% |
| AACCAACCCAAATTCTTTAT+CGG | - | chr5.1:24617269-24617288 | MS.gene44339:CDS | 30.0% | |
| AACTTTGTTAGACAAGAGAA+AGG | + | chr5.1:24616869-24616888 | None:intergenic | 30.0% | |
| CAAAGACAACAAATCCTTTA+TGG | - | chr5.1:24617462-24617481 | MS.gene44339:CDS | 30.0% | |
| CAATAATATTGAGTGAGCAT+GGG | - | chr5.1:24617642-24617661 | MS.gene44339:intron | 30.0% | |
| GATATTTGTAGTCATCTGAA+AGG | + | chr5.1:24618374-24618393 | None:intergenic | 30.0% | |
| GCAAAACATAAATGTTGCAA+GGG | + | chr5.1:24618165-24618184 | None:intergenic | 30.0% | |
| GCTACTAACTTCTTCATTTA+CGG | - | chr5.1:24618135-24618154 | MS.gene44339:intron | 30.0% | |
| TCAATAATATTGAGTGAGCA+TGG | - | chr5.1:24617641-24617660 | MS.gene44339:intron | 30.0% | |
| TCCATAAACAATGTCCATAA+AGG | + | chr5.1:24617479-24617498 | None:intergenic | 30.0% | |
| TCCTTTATGGACATTGTTTA+TGG | - | chr5.1:24617475-24617494 | MS.gene44339:CDS | 30.0% | |
| TCTCTCGTAAAAATACTTTC+AGG | + | chr5.1:24617701-24617720 | None:intergenic | 30.0% | |
| ! | ATTTGGTAACAGAGCAAAAA+AGG | - | chr5.1:24616801-24616820 | MS.gene44339:intron | 30.0% |
| ! | CACTGTTTTGTGAATCTTTT+GGG | - | chr5.1:24617542-24617561 | MS.gene44339:intron | 30.0% |
| ! | TCACTGTTTTGTGAATCTTT+TGG | - | chr5.1:24617541-24617560 | MS.gene44339:intron | 30.0% |
| ! | TTTGGTAACAGAGCAAAAAA+GGG | - | chr5.1:24616802-24616821 | MS.gene44339:intron | 30.0% |
| !! | CACAGGAGTATTATTAAGTT+AGG | + | chr5.1:24618575-24618594 | None:intergenic | 30.0% |
| AATAATACTCCTGTGATGCA+GGG | - | chr5.1:24618580-24618599 | MS.gene44339:intron | 35.0% | |
| AATCATTTGTACATCCTAGG+TGG | - | chr5.1:24617862-24617881 | MS.gene44339:intron | 35.0% | |
| AATTAATGTGTTGTGAAGGG+TGG | - | chr5.1:24617027-24617046 | MS.gene44339:CDS | 35.0% | |
| ATCATTTGTACATCCTAGGT+GGG | - | chr5.1:24617863-24617882 | MS.gene44339:intron | 35.0% | |
| ATCCGATAAAGAATTTGGGT+TGG | + | chr5.1:24617274-24617293 | None:intergenic | 35.0% | |
| ATTGTAGCTTCCAACACATT+CGG | - | chr5.1:24617131-24617150 | MS.gene44339:intron | 35.0% | |
| CCAAAGAATCAAAAAGACGA+AGG | + | chr5.1:24618268-24618287 | None:intergenic | 35.0% | |
| CGCAAAACATAAATGTTGCA+AGG | + | chr5.1:24618166-24618185 | None:intergenic | 35.0% | |
| TAATAATACTCCTGTGATGC+AGG | - | chr5.1:24618579-24618598 | MS.gene44339:intron | 35.0% | |
| TAGTTAAATGAGACATGGTG+AGG | - | chr5.1:24616995-24617014 | MS.gene44339:CDS | 35.0% | |
| TCAAACCAAGCATCAGAAAA+CGG | + | chr5.1:24617912-24617931 | None:intergenic | 35.0% | |
| TCAGGCTGTTATCTAATTTC+AGG | + | chr5.1:24617683-24617702 | None:intergenic | 35.0% | |
| TGGGATCCGATAAAGAATTT+GGG | + | chr5.1:24617278-24617297 | None:intergenic | 35.0% | |
| TGGTTTGATGCAATCACTAT+GGG | - | chr5.1:24617924-24617943 | MS.gene44339:intron | 35.0% | |
| TGTACCAATTTACGCTTGAT+CGG | + | chr5.1:24618458-24618477 | None:intergenic | 35.0% | |
| TGTGAAGGGTGGAATAAAAT+CGG | - | chr5.1:24617038-24617057 | MS.gene44339:CDS | 35.0% | |
| TTATCCGATCAAGCGTAAAT+TGG | - | chr5.1:24618451-24618470 | MS.gene44339:intron | 35.0% | |
| TTGGGATCCGATAAAGAATT+TGG | + | chr5.1:24617279-24617298 | None:intergenic | 35.0% | |
| TTTCTCAAAGGAGCAACTAA+TGG | - | chr5.1:24617585-24617604 | MS.gene44339:intron | 35.0% | |
| ! | TTGGTTTGATGCAATCACTA+TGG | - | chr5.1:24617923-24617942 | MS.gene44339:intron | 35.0% |
| !! | CCTTCGTCTTTTTGATTCTT+TGG | - | chr5.1:24618265-24618284 | MS.gene44339:intron | 35.0% |
| !! | GAGAAACTTGCTTTAGAAGT+AGG | - | chr5.1:24618612-24618631 | MS.gene44339:intron | 35.0% |
| !! | GATTGGTCTTGATTTCTCAA+AGG | - | chr5.1:24617573-24617592 | MS.gene44339:intron | 35.0% |
| !! | TAGCTTTATAACGGAGAACA+TGG | + | chr5.1:24617761-24617780 | None:intergenic | 35.0% |
| !! | TGGAATAAAATCGGGTTGAT+TGG | - | chr5.1:24617047-24617066 | MS.gene44339:CDS | 35.0% |
| !! | TTTTGATTCTTTGGTGTGAG+CGG | - | chr5.1:24618274-24618293 | MS.gene44339:intron | 35.0% |
| !!! | TTGTGAATCTTTTGGGATGT+AGG | - | chr5.1:24617549-24617568 | MS.gene44339:intron | 35.0% |
| AAAAAAGGGTGACCGTGTAT+TGG | - | chr5.1:24616816-24616835 | MS.gene44339:intron | 40.0% | |
| AAATAGGCCCATATCTCTGT+GGG | + | chr5.1:24617340-24617359 | None:intergenic | 40.0% | |
| ACTACATAGGTCGTATCTCT+AGG | + | chr5.1:24617195-24617214 | None:intergenic | 40.0% | |
| ACTGCTCGACATTATGAGAT+CGG | - | chr5.1:24618642-24618661 | MS.gene44339:intron | 40.0% | |
| AGTTGAGATACAACAGCTAC+CGG | + | chr5.1:24618015-24618034 | None:intergenic | 40.0% | |
| ATCTGAAAGGCCATAAACAG+AGG | + | chr5.1:24618361-24618380 | None:intergenic | 40.0% | |
| CACACGTAAAATTTCCTGCA+TGG | + | chr5.1:24617985-24618004 | None:intergenic | 40.0% | |
| CCTTTCATACCCAAAACGTT+GGG | + | chr5.1:24617297-24617316 | None:intergenic | 40.0% | |
| CTACATAGGTCGTATCTCTA+GGG | + | chr5.1:24617194-24617213 | None:intergenic | 40.0% | |
| GAAACCAACTTGTAAGGTGA+TGG | + | chr5.1:24617237-24617256 | None:intergenic | 40.0% | |
| GTGAAGGGTGGAATAAAATC+GGG | - | chr5.1:24617039-24617058 | MS.gene44339:CDS | 40.0% | |
| TAAATAGGCCCATATCTCTG+TGG | + | chr5.1:24617341-24617360 | None:intergenic | 40.0% | |
| TCTAACAAAGTTGCCTCCAA+TGG | - | chr5.1:24616877-24616896 | MS.gene44339:intron | 40.0% | |
| TGGAAATTCCACCTTCATTG+CGG | - | chr5.1:24617067-24617086 | MS.gene44339:intron | 40.0% | |
| TGGGTGTGAATGAGTGAATT+TGG | - | chr5.1:24617159-24617178 | MS.gene44339:intron | 40.0% | |
| TGTGTTGGAAGCTACAATGA+AGG | + | chr5.1:24617129-24617148 | None:intergenic | 40.0% | |
| TTTGCGCTGCTTAAGTTTAG+AGG | - | chr5.1:24618180-24618199 | MS.gene44339:intron | 40.0% | |
| ! | CAACTTGTAAGGTGATGGTT+GGG | + | chr5.1:24617232-24617251 | None:intergenic | 40.0% |
| ! | TTATCGGATCCCAACGTTTT+GGG | - | chr5.1:24617285-24617304 | MS.gene44339:CDS | 40.0% |
| ! | TTTATCGGATCCCAACGTTT+TGG | - | chr5.1:24617284-24617303 | MS.gene44339:CDS | 40.0% |
| !! | CCAACGTTTTGGGTATGAAA+GGG | - | chr5.1:24617295-24617314 | MS.gene44339:intron | 40.0% |
| !! | TCACCTTACAAGTTGGTTTC+CGG | - | chr5.1:24617237-24617256 | MS.gene44339:intron | 40.0% |
| !!! | CGTGCTACTTTTTACTTTCC+AGG | - | chr5.1:24618073-24618092 | MS.gene44339:intron | 40.0% |
| !!! | TCTTTTGGGATGTAGGTGAT+TGG | - | chr5.1:24617556-24617575 | MS.gene44339:intron | 40.0% |
| AACTAATGGTCGCCTCATCA+CGG | - | chr5.1:24617599-24617618 | MS.gene44339:intron | 45.0% | |
| AGGATAGATGCTGTAGAACC+TGG | + | chr5.1:24618094-24618113 | None:intergenic | 45.0% | |
| CAACCGGAAACCAACTTGTA+AGG | + | chr5.1:24617243-24617262 | None:intergenic | 45.0% | |
| CACAGCAGACATCCAATACA+CGG | + | chr5.1:24616831-24616850 | None:intergenic | 45.0% | |
| CACATTGCCCACAGAGATAT+GGG | - | chr5.1:24617330-24617349 | MS.gene44339:intron | 45.0% | |
| CACTCCTAGAACGAGAAATG+GGG | + | chr5.1:24618309-24618328 | None:intergenic | 45.0% | |
| CCAACCATCACCTTACAAGT+TGG | - | chr5.1:24617230-24617249 | MS.gene44339:intron | 45.0% | |
| CCACTCCTAGAACGAGAAAT+GGG | + | chr5.1:24618310-24618329 | None:intergenic | 45.0% | |
| CCCTTTCATACCCAAAACGT+TGG | + | chr5.1:24617298-24617317 | None:intergenic | 45.0% | |
| CTAACCCCATTTCTCGTTCT+AGG | - | chr5.1:24618302-24618321 | MS.gene44339:intron | 45.0% | |
| GTTGAGATACAACAGCTACC+GGG | + | chr5.1:24618014-24618033 | None:intergenic | 45.0% | |
| TCCACTCCTAGAACGAGAAA+TGG | + | chr5.1:24618311-24618330 | None:intergenic | 45.0% | |
| TGATAAGCGTAAAGCCATGC+AGG | - | chr5.1:24617968-24617987 | MS.gene44339:intron | 45.0% | |
| ! | ATTTTACGTGTGCTGAAGCC+CGG | - | chr5.1:24617993-24618012 | MS.gene44339:intron | 45.0% |
| ! | CCAACTTGTAAGGTGATGGT+TGG | + | chr5.1:24617233-24617252 | None:intergenic | 45.0% |
| ! | GATGCAATCACTATGGGCTA+TGG | - | chr5.1:24617930-24617949 | MS.gene44339:intron | 45.0% |
| ! | GTCGTATCTCTAGGGAATGT+GGG | + | chr5.1:24617186-24617205 | None:intergenic | 45.0% |
| !! | CCCAACGTTTTGGGTATGAA+AGG | - | chr5.1:24617294-24617313 | MS.gene44339:intron | 45.0% |
| !! | TCCAACACATTCGGTGTGTT+GGG | - | chr5.1:24617140-24617159 | MS.gene44339:intron | 45.0% |
| !! | TGGGTTGGTTCTAACACAAC+CGG | + | chr5.1:24617259-24617278 | None:intergenic | 45.0% |
| !! | TTCCAACACATTCGGTGTGT+TGG | - | chr5.1:24617139-24617158 | MS.gene44339:intron | 45.0% |
| !!! | ACTTGCCGTTTTCTGATGCT+TGG | - | chr5.1:24617904-24617923 | MS.gene44339:intron | 45.0% |
| AACGCCGTAATTAGGCAGCT+AGG | + | chr5.1:24617099-24617118 | None:intergenic | 50.0% | |
| ACCCAACACACCGAATGTGT+TGG | + | chr5.1:24617144-24617163 | None:intergenic | 50.0% | |
| ACGCCGTAATTAGGCAGCTA+GGG | + | chr5.1:24617098-24617117 | None:intergenic | 50.0% | |
| AGAAGAGCTTGCCTTGCCAT+TGG | + | chr5.1:24616896-24616915 | None:intergenic | 50.0% | |
| AGCTGCCTAATTACGGCGTT+TGG | - | chr5.1:24617099-24617118 | MS.gene44339:intron | 50.0% | |
| AGGCCATAAACAGAGGCTAC+AGG | + | chr5.1:24618354-24618373 | None:intergenic | 50.0% | |
| ATACTCCTGTGATGCAGGGA+AGG | - | chr5.1:24618584-24618603 | MS.gene44339:intron | 50.0% | |
| CAAAGTTGCCTCCAATGGCA+AGG | - | chr5.1:24616882-24616901 | MS.gene44339:intron | 50.0% | |
| CAATTCCTTCCCTGCATCAC+AGG | + | chr5.1:24618592-24618611 | None:intergenic | 50.0% | |
| CCACATTGCCCACAGAGATA+TGG | - | chr5.1:24617329-24617348 | MS.gene44339:intron | 50.0% | |
| CCATATCTCTGTGGGCAATG+TGG | + | chr5.1:24617332-24617351 | None:intergenic | 50.0% | |
| CGACATTATGAGATCGGTGG+AGG | - | chr5.1:24618648-24618667 | MS.gene44339:intron | 50.0% | |
| CGTGTATTGGATGTCTGCTG+TGG | - | chr5.1:24616829-24616848 | MS.gene44339:intron | 50.0% | |
| CTGTGATGCAGGGAAGGAAT+TGG | - | chr5.1:24618590-24618609 | MS.gene44339:intron | 50.0% | |
| GCAACCCAAACGCCGTAATT+AGG | + | chr5.1:24617107-24617126 | None:intergenic | 50.0% | |
| GCTCGACATTATGAGATCGG+TGG | - | chr5.1:24618645-24618664 | MS.gene44339:intron | 50.0% | |
| GCTGCCTAATTACGGCGTTT+GGG | - | chr5.1:24617100-24617119 | MS.gene44339:intron | 50.0% | |
| GGCCATAAACAGAGGCTACA+GGG | + | chr5.1:24618353-24618372 | None:intergenic | 50.0% | |
| GTCCCTGTAGCCTCTGTTTA+TGG | - | chr5.1:24618348-24618367 | MS.gene44339:intron | 50.0% | |
| TGCCCCTAGCTGCCTAATTA+CGG | - | chr5.1:24617092-24617111 | MS.gene44339:intron | 50.0% | |
| TTGGATGTCTGCTGTGGAAG+TGG | - | chr5.1:24616835-24616854 | MS.gene44339:intron | 50.0% | |
| ! | CTTTGAAAGCGACCGTGATG+AGG | + | chr5.1:24617614-24617633 | None:intergenic | 50.0% |
| ! | GATTCTTTGGTGTGAGCGGA+AGG | - | chr5.1:24618278-24618297 | MS.gene44339:intron | 50.0% |
| ! | GGTCGTATCTCTAGGGAATG+TGG | + | chr5.1:24617187-24617206 | None:intergenic | 50.0% |
| !! | CCCATTTCTCGTTCTAGGAG+TGG | - | chr5.1:24618307-24618326 | MS.gene44339:intron | 50.0% |
| !! | GTACATCCTAGGTGGGTTGA+AGG | - | chr5.1:24617870-24617889 | MS.gene44339:intron | 50.0% |
| AGAGCTTGCCTTGCCATTGG+AGG | + | chr5.1:24616893-24616912 | None:intergenic | 55.0% | |
| CGCCGTAATTAGGCAGCTAG+GGG | + | chr5.1:24617097-24617116 | None:intergenic | 55.0% | |
| GCATCACCTTCAACCCACCT+AGG | + | chr5.1:24617879-24617898 | None:intergenic | 55.0% | |
| TAGCTACCAAGCACCCCATG+AGG | + | chr5.1:24618674-24618693 | None:intergenic | 55.0% | |
| AGATCGGTGGAGGCCTCATG+GGG | - | chr5.1:24618658-24618677 | MS.gene44339:intron | 60.0% | |
| GAGATCGGTGGAGGCCTCAT+GGG | - | chr5.1:24618657-24618676 | MS.gene44339:intron | 60.0% | |
| TGAGATCGGTGGAGGCCTCA+TGG | - | chr5.1:24618656-24618675 | MS.gene44339:intron | 60.0% | |
| ! | CTAGGGGCACACCGCAATGA+AGG | + | chr5.1:24617081-24617100 | None:intergenic | 60.0% |
| GGGGCACACCGCAATGAAGG+TGG | + | chr5.1:24617078-24617097 | None:intergenic | 65.0% | |
| ! | TGGAGGCCTCATGGGGTGCT+TGG | - | chr5.1:24618665-24618684 | MS.gene44339:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 24616706 | 24618701 | 24616706 | ID=MS.gene44339 |
| chr5.1 | mRNA | 24616706 | 24618701 | 24616706 | ID=MS.gene44339.t1;Parent=MS.gene44339 |
| chr5.1 | exon | 24618682 | 24618701 | 24618682 | ID=MS.gene44339.t1.exon1;Parent=MS.gene44339.t1 |
| chr5.1 | CDS | 24618682 | 24618701 | 24618682 | ID=cds.MS.gene44339.t1;Parent=MS.gene44339.t1 |
| chr5.1 | exon | 24618504 | 24618594 | 24618504 | ID=MS.gene44339.t1.exon2;Parent=MS.gene44339.t1 |
| chr5.1 | CDS | 24618504 | 24618594 | 24618504 | ID=cds.MS.gene44339.t1;Parent=MS.gene44339.t1 |
| chr5.1 | exon | 24617754 | 24617836 | 24617754 | ID=MS.gene44339.t1.exon3;Parent=MS.gene44339.t1 |
| chr5.1 | CDS | 24617754 | 24617836 | 24617754 | ID=cds.MS.gene44339.t1;Parent=MS.gene44339.t1 |
| chr5.1 | exon | 24617393 | 24617526 | 24617393 | ID=MS.gene44339.t1.exon4;Parent=MS.gene44339.t1 |
| chr5.1 | CDS | 24617393 | 24617526 | 24617393 | ID=cds.MS.gene44339.t1;Parent=MS.gene44339.t1 |
| chr5.1 | exon | 24617251 | 24617312 | 24617251 | ID=MS.gene44339.t1.exon5;Parent=MS.gene44339.t1 |
| chr5.1 | CDS | 24617251 | 24617312 | 24617251 | ID=cds.MS.gene44339.t1;Parent=MS.gene44339.t1 |
| chr5.1 | exon | 24616984 | 24617083 | 24616984 | ID=MS.gene44339.t1.exon6;Parent=MS.gene44339.t1 |
| chr5.1 | CDS | 24616984 | 24617083 | 24616984 | ID=cds.MS.gene44339.t1;Parent=MS.gene44339.t1 |
| chr5.1 | exon | 24616706 | 24616806 | 24616706 | ID=MS.gene44339.t1.exon7;Parent=MS.gene44339.t1 |
| chr5.1 | CDS | 24616706 | 24616806 | 24616706 | ID=cds.MS.gene44339.t1;Parent=MS.gene44339.t1 |
| Gene Sequence |
| Protein sequence |
