Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53448.t1 | XP_003613181.2 | 98.8 | 246 | 3 | 0 | 1 | 246 | 17 | 262 | 2.40E-137 | 498 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53448.t1 | Q3ED65 | 69.2 | 237 | 71 | 1 | 10 | 244 | 23 | 259 | 1.2e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53448.t1 | G7K058 | 98.8 | 246 | 3 | 0 | 1 | 246 | 17 | 262 | 1.8e-137 | 498.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene53448 | 0.842759 | 2.13E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene53448 | 0.832451 | 9.38E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene53448 | 0.805063 | 1.60E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene53448 | 0.831958 | 1.24E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene53448 | 0.835429 | 1.69E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene53448 | 0.856177 | 3.84E-62 | -1.69E-46 |
| MS.gene050475 | MS.gene53448 | -0.802592 | 5.21E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene53448 | 0.814455 | 1.53E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene53448 | 0.841071 | 5.93E-58 | -1.69E-46 |
| MS.gene050770 | MS.gene53448 | 0.843761 | 1.15E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene53448 | 0.809744 | 1.63E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene53448 | 0.852033 | 6.02E-61 | -1.69E-46 |
| MS.gene051434 | MS.gene53448 | 0.835209 | 1.92E-56 | -1.69E-46 |
| MS.gene051810 | MS.gene53448 | 0.841997 | 3.38E-58 | -1.69E-46 |
| MS.gene051858 | MS.gene53448 | 0.819848 | 9.36E-53 | -1.69E-46 |
| MS.gene051949 | MS.gene53448 | 0.823654 | 1.23E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene53448 | 0.830278 | 3.21E-55 | -1.69E-46 |
| MS.gene052290 | MS.gene53448 | 0.820181 | 7.85E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene53448 | 0.861459 | 1.01E-63 | -1.69E-46 |
| MS.gene052870 | MS.gene53448 | 0.815903 | 7.28E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene53448 | 0.80972 | 1.65E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene53448 | 0.821059 | 4.94E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene53448 | 0.831234 | 1.87E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene53448 | 0.820026 | 8.52E-53 | -1.69E-46 |
| MS.gene053384 | MS.gene53448 | 0.81567 | 8.21E-52 | -1.69E-46 |
| MS.gene053561 | MS.gene53448 | -0.811378 | 7.21E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene53448 | 0.811219 | 7.81E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene53448 | 0.805861 | 1.09E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene53448 | 0.811696 | 6.15E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene53448 | 0.836827 | 7.45E-57 | -1.69E-46 |
| MS.gene054802 | MS.gene53448 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene53448 | 0.805862 | 1.09E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene53448 | 0.808983 | 2.37E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene53448 | 0.819449 | 1.15E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene53448 | 0.852789 | 3.66E-61 | -1.69E-46 |
| MS.gene055499 | MS.gene53448 | 0.823021 | 1.73E-53 | -1.69E-46 |
| MS.gene055634 | MS.gene53448 | 0.804586 | 2.01E-49 | -1.69E-46 |
| MS.gene055636 | MS.gene53448 | 0.844886 | 5.72E-59 | -1.69E-46 |
| MS.gene055638 | MS.gene53448 | 0.865782 | 4.60E-65 | -1.69E-46 |
| MS.gene05592 | MS.gene53448 | 0.839641 | 1.40E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene53448 | 0.816119 | 6.52E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene53448 | 0.850319 | 1.83E-60 | -1.69E-46 |
| MS.gene057926 | MS.gene53448 | 0.816356 | 5.77E-52 | -1.69E-46 |
| MS.gene058723 | MS.gene53448 | 0.809215 | 2.11E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene53448 | 0.836124 | 1.12E-56 | -1.69E-46 |
| MS.gene058840 | MS.gene53448 | -0.804346 | 2.26E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene53448 | 0.801737 | 7.82E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene53448 | 0.843244 | 1.58E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene53448 | 0.828556 | 8.42E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene53448 | 0.813611 | 2.35E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene53448 | 0.815618 | 8.43E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene53448 | 0.839825 | 1.26E-57 | -1.69E-46 |
| MS.gene060818 | MS.gene53448 | 0.828745 | 7.58E-55 | -1.69E-46 |
| MS.gene061134 | MS.gene53448 | 0.807821 | 4.19E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene53448 | 0.804885 | 1.74E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene53448 | 0.854797 | 9.69E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060842 | MS.gene53448 | PPI |
| MS.gene026734 | MS.gene53448 | PPI |
| MS.gene034104 | MS.gene53448 | PPI |
| MS.gene61163 | MS.gene53448 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53448.t1 | MTR_5g033700 | 98.780 | 246 | 3 | 0 | 1 | 246 | 17 | 262 | 0.0 | 503 |
| MS.gene53448.t1 | MTR_4g009880 | 28.632 | 234 | 148 | 4 | 25 | 239 | 49 | 282 | 3.90e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53448.t1 | AT1G23360 | 69.198 | 237 | 71 | 1 | 10 | 244 | 23 | 259 | 6.65e-120 | 342 |
| MS.gene53448.t1 | AT1G23360 | 64.557 | 158 | 54 | 1 | 89 | 244 | 1 | 158 | 2.47e-70 | 213 |
| MS.gene53448.t1 | AT1G23360 | 64.557 | 158 | 54 | 1 | 89 | 244 | 1 | 158 | 2.47e-70 | 213 |
| MS.gene53448.t1 | AT5G57300 | 28.151 | 238 | 147 | 4 | 25 | 241 | 48 | 282 | 2.70e-22 | 93.2 |
| MS.gene53448.t1 | AT5G57300 | 28.151 | 238 | 147 | 4 | 25 | 241 | 48 | 282 | 2.70e-22 | 93.2 |
| MS.gene53448.t1 | AT5G57300 | 28.151 | 238 | 147 | 4 | 25 | 241 | 48 | 282 | 2.70e-22 | 93.2 |
| MS.gene53448.t1 | AT5G57300 | 28.151 | 238 | 147 | 4 | 25 | 241 | 48 | 282 | 2.70e-22 | 93.2 |
| MS.gene53448.t1 | AT2G41040 | 26.906 | 223 | 126 | 7 | 26 | 215 | 133 | 351 | 1.55e-11 | 63.5 |
Find 56 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCTGTAGCCTCTGTTTA+TGG | 0.157587 | 5.3:-22789914 | MS.gene53448:CDS |
| GCTACTAACTTCTTCATTTA+CGG | 0.259722 | 5.3:-22790127 | MS.gene53448:intron |
| GCTTGGGTCAGCACCGGATT+TGG | 0.335534 | 5.3:-22791720 | MS.gene53448:CDS |
| GGAAGCGAATGGCTGTTTCT+TGG | 0.344170 | 5.3:-22791699 | MS.gene53448:CDS |
| GCTGAATGATTTGCTGAGCT+TGG | 0.375216 | 5.3:-22791737 | MS.gene53448:CDS |
| GAGAAACTTGCTTTAGAAGT+AGG | 0.398667 | 5.3:-22789649 | MS.gene53448:CDS |
| CAGCCATTCGCTTCCAAATC+CGG | 0.402703 | 5.3:+22791707 | None:intergenic |
| TGGAGGCCTCATGGGGTGCT+TGG | 0.422234 | 5.3:-22789596 | MS.gene53448:CDS |
| CTGTGATGCAGGGAAGGAAT+TGG | 0.426333 | 5.3:-22789671 | MS.gene53448:intron |
| TTGGTTTGATGCAATCACTA+TGG | 0.429752 | 5.3:-22790339 | MS.gene53448:CDS |
| TTTCTCAAAGGAGCAACTAA+TGG | 0.435316 | 5.3:-22790677 | MS.gene53448:CDS |
| GAGATCGGTGGAGGCCTCAT+GGG | 0.444479 | 5.3:-22789604 | MS.gene53448:CDS |
| CTGAATGATTTGCTGAGCTT+GGG | 0.456434 | 5.3:-22791736 | MS.gene53448:CDS |
| ATGGAAGTCGGTCGGAATGA+AGG | 0.467617 | 5.3:+22791891 | None:intergenic |
| AGAAGAGCTTGCCTTGCCAT+TGG | 0.469398 | 5.3:+22791504 | None:intergenic |
| TGCTGAGCTTGGGTCAGCAC+CGG | 0.478547 | 5.3:-22791726 | MS.gene53448:CDS |
| AGAGCTTGCCTTGCCATTGG+AGG | 0.480628 | 5.3:+22791507 | None:intergenic |
| GTACATCCTAGGTGGGTTGA+AGG | 0.482364 | 5.3:-22790392 | MS.gene53448:intron |
| TTGTGTTGCAGAGATGTTCC+CGG | 0.492822 | 5.3:-22791928 | None:intergenic |
| TGAGATCGGTGGAGGCCTCA+TGG | 0.504020 | 5.3:-22789605 | MS.gene53448:CDS |
| GAAAAGCGCCTGTCGGTCGT+TGG | 0.508235 | 5.3:+22791860 | None:intergenic |
| AGGCCATAAACAGAGGCTAC+AGG | 0.514026 | 5.3:+22789911 | None:intergenic |
| TTGGATGTCTGCTGTGGAAG+TGG | 0.515717 | 5.3:-22791562 | MS.gene53448:CDS |
| AAGGATAAGGAGCAACCGCC+GGG | 0.515863 | 5.3:+22791910 | None:intergenic |
| TGGTTTGATGCAATCACTAT+GGG | 0.517163 | 5.3:-22790338 | MS.gene53448:CDS |
| TCAAACCAAGCATCAGAAAA+CGG | 0.523537 | 5.3:+22790353 | None:intergenic |
| TCGCTGCTCCAACGACCGAC+AGG | 0.524223 | 5.3:-22791868 | MS.gene53448:CDS |
| CGACATTATGAGATCGGTGG+AGG | 0.533048 | 5.3:-22789613 | MS.gene53448:CDS |
| GTCGGTCGGAATGAAGGATA+AGG | 0.536675 | 5.3:+22791897 | None:intergenic |
| GATGCAATCACTATGGGCTA+TGG | 0.547081 | 5.3:-22790332 | MS.gene53448:CDS |
| GGGCGCACGTTATCATAGAC+AGG | 0.548668 | 5.3:+22791825 | None:intergenic |
| AACTTTGTTAGACAAGAGAA+AGG | 0.551476 | 5.3:+22791531 | None:intergenic |
| CTTTGAAAGCGACCGTGATG+AGG | 0.553016 | 5.3:+22790651 | None:intergenic |
| TCTAACAAAGTTGCCTCCAA+TGG | 0.553337 | 5.3:-22791520 | MS.gene53448:CDS |
| GAAGGATAAGGAGCAACCGC+CGG | 0.567694 | 5.3:+22791909 | None:intergenic |
| TGATAAGCGTAAAGCCATGC+AGG | 0.572450 | 5.3:-22790294 | MS.gene53448:CDS |
| GATATTTGTAGTCATCTGAA+AGG | 0.577823 | 5.3:+22789891 | None:intergenic |
| TCGGTCGTTGGAGCAGCGAA+TGG | 0.583040 | 5.3:+22791872 | None:intergenic |
| GGCCATAAACAGAGGCTACA+GGG | 0.586319 | 5.3:+22789912 | None:intergenic |
| CACACGTAAAATTTCCTGCA+TGG | 0.586402 | 5.3:+22790280 | None:intergenic |
| ACTGCTCGACATTATGAGAT+CGG | 0.594791 | 5.3:-22789619 | MS.gene53448:CDS |
| GATTGGTCTTGATTTCTCAA+AGG | 0.599953 | 5.3:-22790689 | MS.gene53448:CDS |
| CAAAGTTGCCTCCAATGGCA+AGG | 0.615328 | 5.3:-22791515 | MS.gene53448:intron |
| GCACCGGATTTGGAAGCGAA+TGG | 0.615773 | 5.3:-22791710 | MS.gene53448:CDS |
| TGCGGTTGAAAAGCGCCTGT+CGG | 0.616608 | 5.3:+22791853 | None:intergenic |
| AGATCGGTGGAGGCCTCATG+GGG | 0.618606 | 5.3:-22789603 | MS.gene53448:CDS |
| AACTAATGGTCGCCTCATCA+CGG | 0.620553 | 5.3:-22790663 | MS.gene53448:CDS |
| TTGGAGCAGCGAATGGAAGT+CGG | 0.628117 | 5.3:+22791879 | None:intergenic |
| CGTGTATTGGATGTCTGCTG+TGG | 0.636133 | 5.3:-22791568 | MS.gene53448:CDS |
| CACAGCAGACATCCAATACA+CGG | 0.640805 | 5.3:+22791569 | None:intergenic |
| AGCAGCGAATGGAAGTCGGT+CGG | 0.656578 | 5.3:+22791883 | None:intergenic |
| ATCTGAAAGGCCATAAACAG+AGG | 0.659783 | 5.3:+22789904 | None:intergenic |
| GCTCGACATTATGAGATCGG+TGG | 0.666601 | 5.3:-22789616 | MS.gene53448:CDS |
| TAGCTACCAAGCACCCCATG+AGG | 0.708176 | 5.3:+22789590 | None:intergenic |
| TATCATAGACAGGAGCAATG+CGG | 0.761354 | 5.3:+22791835 | None:intergenic |
| TGTTGCAGAGATGTTCCCGG+CGG | 0.792432 | 5.3:-22791925 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTATAGTAGTAAG+AGG | - | chr5.3:22791733-22791752 | MS.gene53448:CDS | 15.0% |
| !! | ATAATATTGCAAAAATGAGT+TGG | + | chr5.3:22790056-22790075 | None:intergenic | 20.0% |
| !! | ATATAATTAATGTGTTGTGA+AGG | - | chr5.3:22790123-22790142 | MS.gene53448:intron | 20.0% |
| !! | ATCATTTCATTCTATTCTAA+TGG | - | chr5.3:22789850-22789869 | MS.gene53448:intron | 20.0% |
| !! | GTTAATGTATCTTGAATAAT+CGG | + | chr5.3:22790680-22790699 | None:intergenic | 20.0% |
| !! | TAAAATAGTTAAATGAGACA+TGG | - | chr5.3:22790090-22790109 | MS.gene53448:intron | 20.0% |
| !! | TATAATTAATGTGTTGTGAA+GGG | - | chr5.3:22790124-22790143 | MS.gene53448:intron | 20.0% |
| !! | TATTATAGACCAAATACAAT+AGG | - | chr5.3:22790308-22790327 | MS.gene53448:CDS | 20.0% |
| !! | TTATTCAAGATACATTAACA+TGG | - | chr5.3:22790681-22790700 | MS.gene53448:CDS | 20.0% |
| !!! | TAAGCAAAAAAACACTTTTT+AGG | + | chr5.3:22790345-22790364 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAAATCACTTTTT+AGG | - | chr5.3:22790256-22790275 | MS.gene53448:intron | 20.0% |
| !!! | TCAATAAGAGAATTTTTAAC+AGG | - | chr5.3:22791637-22791656 | MS.gene53448:intron | 20.0% |
| !!! | TCATTTTTGCAATATTATGT+TGG | - | chr5.3:22790058-22790077 | MS.gene53448:intron | 20.0% |
| !!! | TTAGTGTTTTAGCTTTATAA+CGG | + | chr5.3:22791005-22791024 | None:intergenic | 20.0% |
| ! | AAGTTGTACATTAGTATCAT+TGG | - | chr5.3:22791051-22791070 | MS.gene53448:intron | 25.0% |
| ! | ATCGGTTAATTGTTTAAATG+CGG | + | chr5.3:22790662-22790681 | None:intergenic | 25.0% |
| ! | CAAGTCAATAACATATTGAT+TGG | - | chr5.3:22791265-22791284 | MS.gene53448:intron | 25.0% |
| ! | CATTCAACACTTAATGTATT+TGG | - | chr5.3:22790281-22790300 | MS.gene53448:CDS | 25.0% |
| ! | TTGATTGTTGTGTTTGAATT+TGG | - | chr5.3:22789884-22789903 | MS.gene53448:CDS | 25.0% |
| ! | TTTAATCATTTGTACATCCT+AGG | - | chr5.3:22791094-22791113 | MS.gene53448:intron | 25.0% |
| !! | AAGCTTTATAAACACTACAT+AGG | + | chr5.3:22790457-22790476 | None:intergenic | 25.0% |
| !! | ATCATTGGTGATAGTATAAT+AGG | - | chr5.3:22791066-22791085 | MS.gene53448:intron | 25.0% |
| !! | CAGCTTTATAAACACTAAAT+AGG | + | chr5.3:22790605-22790624 | None:intergenic | 25.0% |
| !! | TCATTGGTGATAGTATAATA+GGG | - | chr5.3:22791067-22791086 | MS.gene53448:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | chr5.3:22790355-22790374 | MS.gene53448:CDS | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr5.3:22790374-22790355 | None:intergenic | 25.0% |
| !!! | CATTGCTTTTATTAAAGTCA+AGG | + | chr5.3:22791349-22791368 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCAATTGAACTGA+AGG | - | chr5.3:22791660-22791679 | MS.gene53448:intron | 25.0% |
| AACCAACCCAAATTCTTTAT+CGG | - | chr5.3:22790518-22790537 | MS.gene53448:intron | 30.0% | |
| AACTTTGTTAGACAAGAGAA+AGG | + | chr5.3:22789969-22789988 | None:intergenic | 30.0% | |
| ACAAGACAACAAATCCTTTA+TGG | - | chr5.3:22790710-22790729 | MS.gene53448:intron | 30.0% | |
| ATCCCAAAAGATTCACAAAA+CGG | + | chr5.3:22790782-22790801 | None:intergenic | 30.0% | |
| CAATAATATTGAGTGAGCAT+GGG | - | chr5.3:22790877-22790896 | MS.gene53448:intron | 30.0% | |
| CATTCAACACCTATTGTATT+TGG | + | chr5.3:22790320-22790339 | None:intergenic | 30.0% | |
| GATATTTGTAGTCATCTGAA+AGG | + | chr5.3:22791609-22791628 | None:intergenic | 30.0% | |
| GCAAAACATAAATGTTGCAA+GGG | + | chr5.3:22791400-22791419 | None:intergenic | 30.0% | |
| GCTACTAACTTCTTCATTTA+CGG | - | chr5.3:22791370-22791389 | MS.gene53448:intron | 30.0% | |
| TCAATAATATTGAGTGAGCA+TGG | - | chr5.3:22790876-22790895 | MS.gene53448:intron | 30.0% | |
| TCTCTCGTAAAAATACTTTC+AGG | + | chr5.3:22790936-22790955 | None:intergenic | 30.0% | |
| TGCAAACAAAATGTCCATAA+AGG | + | chr5.3:22790727-22790746 | None:intergenic | 30.0% | |
| TGGAATAAAATCGGGTTTAT+TGG | - | chr5.3:22790147-22790166 | MS.gene53448:CDS | 30.0% | |
| ! | ATTTGGTAACAGAGCAAAAA+AGG | - | chr5.3:22789901-22789920 | MS.gene53448:CDS | 30.0% |
| ! | TTTGGTAACAGAGCAAAAAA+GGG | - | chr5.3:22789902-22789921 | MS.gene53448:CDS | 30.0% |
| !! | CACAGGAGTATTATTAAGTT+AGG | + | chr5.3:22791811-22791830 | None:intergenic | 30.0% |
| AATAATACTCCTGTGATGCA+GGG | - | chr5.3:22791816-22791835 | MS.gene53448:intron | 35.0% | |
| AATCATTTGTACATCCTAGG+TGG | - | chr5.3:22791097-22791116 | MS.gene53448:intron | 35.0% | |
| AATTAATGTGTTGTGAAGGG+TGG | - | chr5.3:22790127-22790146 | MS.gene53448:intron | 35.0% | |
| AGAGAGAGAAAGAAAGAAGA+AGG | + | chr5.3:22789696-22789715 | None:intergenic | 35.0% | |
| ATCATTTGTACATCCTAGGT+GGG | - | chr5.3:22791098-22791117 | MS.gene53448:intron | 35.0% | |
| ATCCGATAAAGAATTTGGGT+TGG | + | chr5.3:22790523-22790542 | None:intergenic | 35.0% | |
| ATTCAGCTGCAACAATGAAA+AGG | + | chr5.3:22789747-22789766 | None:intergenic | 35.0% | |
| CCAAAGAATCAAAAAGACGA+AGG | + | chr5.3:22791503-22791522 | None:intergenic | 35.0% | |
| CGCAAAACATAAATGTTGCA+AGG | + | chr5.3:22791401-22791420 | None:intergenic | 35.0% | |
| GAGAGAGAAAGAAAGAAGAA+GGG | + | chr5.3:22789695-22789714 | None:intergenic | 35.0% | |
| TAATAATACTCCTGTGATGC+AGG | - | chr5.3:22791815-22791834 | MS.gene53448:intron | 35.0% | |
| TAGTTAAATGAGACATGGTG+AGG | - | chr5.3:22790095-22790114 | MS.gene53448:intron | 35.0% | |
| TCAAACCAAGCATCAGAAAA+CGG | + | chr5.3:22791147-22791166 | None:intergenic | 35.0% | |
| TCAGGCTGTTATCTAATTTC+AGG | + | chr5.3:22790918-22790937 | None:intergenic | 35.0% | |
| TGGGATCCGATAAAGAATTT+GGG | + | chr5.3:22790527-22790546 | None:intergenic | 35.0% | |
| TGGTTTGATGCAATCACTAT+GGG | - | chr5.3:22791159-22791178 | MS.gene53448:intron | 35.0% | |
| TGTGAAGGGTGGAATAAAAT+CGG | - | chr5.3:22790138-22790157 | MS.gene53448:CDS | 35.0% | |
| TGTTCCAATTTACGCTTGAT+CGG | + | chr5.3:22791693-22791712 | None:intergenic | 35.0% | |
| TTATCCGATCAAGCGTAAAT+TGG | - | chr5.3:22791686-22791705 | MS.gene53448:intron | 35.0% | |
| TTGGGATCCGATAAAGAATT+TGG | + | chr5.3:22790528-22790547 | None:intergenic | 35.0% | |
| TTTCTCAAAGGAGCAACTAA+TGG | - | chr5.3:22790820-22790839 | MS.gene53448:intron | 35.0% | |
| ! | CACCGTTTTGTGAATCTTTT+GGG | - | chr5.3:22790777-22790796 | MS.gene53448:intron | 35.0% |
| ! | TCACCGTTTTGTGAATCTTT+TGG | - | chr5.3:22790776-22790795 | MS.gene53448:intron | 35.0% |
| ! | TTGGTTTGATGCAATCACTA+TGG | - | chr5.3:22791158-22791177 | MS.gene53448:intron | 35.0% |
| !! | CCTTCGTCTTTTTGATTCTT+TGG | - | chr5.3:22791500-22791519 | MS.gene53448:intron | 35.0% |
| !! | GAGAAACTTGCTTTAGAAGT+AGG | - | chr5.3:22791848-22791867 | MS.gene53448:CDS | 35.0% |
| !! | GATTGGTCTTGATTTCTCAA+AGG | - | chr5.3:22790808-22790827 | MS.gene53448:intron | 35.0% |
| !! | TAGCTTTATAACGGAGAACA+TGG | + | chr5.3:22790996-22791015 | None:intergenic | 35.0% |
| !! | TTTTGATTCTTTGGTGTGAG+CGG | - | chr5.3:22791509-22791528 | MS.gene53448:intron | 35.0% |
| !!! | TTGTGAATCTTTTGGGATGT+AGG | - | chr5.3:22790784-22790803 | MS.gene53448:intron | 35.0% |
| AAAAAAGGGTGACCGTGTAT+TGG | - | chr5.3:22789916-22789935 | MS.gene53448:CDS | 40.0% | |
| AAATAGGCCCATATCTCTGT+GGG | + | chr5.3:22790589-22790608 | None:intergenic | 40.0% | |
| ACTACATAGGTCGTATCTCT+AGG | + | chr5.3:22790444-22790463 | None:intergenic | 40.0% | |
| ACTGCTCGACATTATGAGAT+CGG | - | chr5.3:22791878-22791897 | MS.gene53448:CDS | 40.0% | |
| ACTTGAGATACAACAGCTAC+CGG | + | chr5.3:22791250-22791269 | None:intergenic | 40.0% | |
| ATCTGAAAGGCCATAAACAG+AGG | + | chr5.3:22791596-22791615 | None:intergenic | 40.0% | |
| CACACGTAAAATTTCCTGCA+TGG | + | chr5.3:22791220-22791239 | None:intergenic | 40.0% | |
| CCTTTCATACCCAAAACGTT+GGG | + | chr5.3:22790546-22790565 | None:intergenic | 40.0% | |
| CTACATAGGTCGTATCTCTA+GGG | + | chr5.3:22790443-22790462 | None:intergenic | 40.0% | |
| GAAACCAACTTGTAAGGTGA+TGG | + | chr5.3:22790486-22790505 | None:intergenic | 40.0% | |
| GTGAAGGGTGGAATAAAATC+GGG | - | chr5.3:22790139-22790158 | MS.gene53448:CDS | 40.0% | |
| TAAATAGGCCCATATCTCTG+TGG | + | chr5.3:22790590-22790609 | None:intergenic | 40.0% | |
| TATCATAGACAGGAGCAATG+CGG | + | chr5.3:22789665-22789684 | None:intergenic | 40.0% | |
| TCTAACAAAGTTGCCTCCAA+TGG | - | chr5.3:22789977-22789996 | MS.gene53448:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr5.3:22790359-22790378 | MS.gene53448:CDS | 40.0% | |
| TGGAAATTCCACCTTCATTG+CGG | - | chr5.3:22790167-22790186 | MS.gene53448:CDS | 40.0% | |
| TGGGTGTGAATGAGTGAATT+TGG | - | chr5.3:22790408-22790427 | MS.gene53448:intron | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr5.3:22790358-22790377 | MS.gene53448:CDS | 40.0% | |
| TTTGCGCTGCTTAAGTTTAG+AGG | - | chr5.3:22791415-22791434 | MS.gene53448:intron | 40.0% | |
| ! | CAACTTGTAAGGTGATGGTT+GGG | + | chr5.3:22790481-22790500 | None:intergenic | 40.0% |
| ! | GCAACAATGAAAAGGTGTGA+AGG | + | chr5.3:22789739-22789758 | None:intergenic | 40.0% |
| ! | TTATCGGATCCCAACGTTTT+GGG | - | chr5.3:22790534-22790553 | MS.gene53448:intron | 40.0% |
| ! | TTTATCGGATCCCAACGTTT+TGG | - | chr5.3:22790533-22790552 | MS.gene53448:intron | 40.0% |
| !! | CCAACGTTTTGGGTATGAAA+GGG | - | chr5.3:22790544-22790563 | MS.gene53448:intron | 40.0% |
| !! | CTGAATGATTTGCTGAGCTT+GGG | - | chr5.3:22789761-22789780 | MS.gene53448:intron | 40.0% |
| !! | TCACCTTACAAGTTGGTTTC+CGG | - | chr5.3:22790486-22790505 | MS.gene53448:intron | 40.0% |
| !!! | CGTGCTACTTTTTACTTTCC+AGG | - | chr5.3:22791308-22791327 | MS.gene53448:intron | 40.0% |
| !!! | TCTTTTGGGATGTAGGTGAT+TGG | - | chr5.3:22790791-22790810 | MS.gene53448:intron | 40.0% |
| AACTAATGGTCGCCTCATCA+CGG | - | chr5.3:22790834-22790853 | MS.gene53448:intron | 45.0% | |
| AGGATAGATGCTGTAGAACC+TGG | + | chr5.3:22791329-22791348 | None:intergenic | 45.0% | |
| CAACCGGAAACCAACTTGTA+AGG | + | chr5.3:22790492-22790511 | None:intergenic | 45.0% | |
| CACAGCAGACATCCAATACA+CGG | + | chr5.3:22789931-22789950 | None:intergenic | 45.0% | |
| CACATTGCCCACAGAGATAT+GGG | - | chr5.3:22790579-22790598 | MS.gene53448:intron | 45.0% | |
| CACTCCTAGAACGAGAAATG+GGG | + | chr5.3:22791544-22791563 | None:intergenic | 45.0% | |
| CCAACCATCACCTTACAAGT+TGG | - | chr5.3:22790479-22790498 | MS.gene53448:intron | 45.0% | |
| CCACTCCTAGAACGAGAAAT+GGG | + | chr5.3:22791545-22791564 | None:intergenic | 45.0% | |
| CCCTTTCATACCCAAAACGT+TGG | + | chr5.3:22790547-22790566 | None:intergenic | 45.0% | |
| CTAACCCCATTTCTCGTTCT+AGG | - | chr5.3:22791537-22791556 | MS.gene53448:CDS | 45.0% | |
| CTTGAGATACAACAGCTACC+GGG | + | chr5.3:22791249-22791268 | None:intergenic | 45.0% | |
| GGAGTAGCTTCCAACACATT+CGG | - | chr5.3:22790380-22790399 | MS.gene53448:CDS | 45.0% | |
| TCCACTCCTAGAACGAGAAA+TGG | + | chr5.3:22791546-22791565 | None:intergenic | 45.0% | |
| TGATAAGCGTAAAGCCATGC+AGG | - | chr5.3:22791203-22791222 | MS.gene53448:intron | 45.0% | |
| TGCCTTCATTGTACTCTCTC+CGG | - | chr5.3:22790224-22790243 | MS.gene53448:intron | 45.0% | |
| ! | ATTTTACGTGTGCTGAAGCC+CGG | - | chr5.3:22791228-22791247 | MS.gene53448:intron | 45.0% |
| ! | CCAACTTGTAAGGTGATGGT+TGG | + | chr5.3:22790482-22790501 | None:intergenic | 45.0% |
| ! | GATGCAATCACTATGGGCTA+TGG | - | chr5.3:22791165-22791184 | MS.gene53448:intron | 45.0% |
| ! | GTCGTATCTCTAGGGAATGT+GGG | + | chr5.3:22790435-22790454 | None:intergenic | 45.0% |
| !! | CCCAACGTTTTGGGTATGAA+AGG | - | chr5.3:22790543-22790562 | MS.gene53448:intron | 45.0% |
| !! | GCTGAATGATTTGCTGAGCT+TGG | - | chr5.3:22789760-22789779 | MS.gene53448:intron | 45.0% |
| !! | TCCAACACATTCGGTGTGTT+GGG | - | chr5.3:22790389-22790408 | MS.gene53448:intron | 45.0% |
| !! | TGGGTTGGTTCTAACTCAAC+CGG | + | chr5.3:22790508-22790527 | None:intergenic | 45.0% |
| !! | TTCCAACACATTCGGTGTGT+TGG | - | chr5.3:22790388-22790407 | MS.gene53448:intron | 45.0% |
| !!! | ACTTGCCGTTTTCTGATGCT+TGG | - | chr5.3:22791139-22791158 | MS.gene53448:intron | 45.0% |
| AACGCCGTAATTAGGCAGCT+AGG | + | chr5.3:22790199-22790218 | None:intergenic | 50.0% | |
| ACCCAACACACCGAATGTGT+TGG | + | chr5.3:22790393-22790412 | None:intergenic | 50.0% | |
| ACGCCGTAATTAGGCAGCTA+GGG | + | chr5.3:22790198-22790217 | None:intergenic | 50.0% | |
| AGAAGAGCTTGCCTTGCCAT+TGG | + | chr5.3:22789996-22790015 | None:intergenic | 50.0% | |
| AGCTGCCTAATTACGGCGTT+TGG | - | chr5.3:22790199-22790218 | MS.gene53448:intron | 50.0% | |
| AGGCCATAAACAGAGGCTAC+AGG | + | chr5.3:22791589-22791608 | None:intergenic | 50.0% | |
| ATACTCCTGTGATGCAGGGA+AGG | - | chr5.3:22791820-22791839 | MS.gene53448:intron | 50.0% | |
| ATGGAAGTCGGTCGGAATGA+AGG | + | chr5.3:22789609-22789628 | None:intergenic | 50.0% | |
| CAAAGTTGCCTCCAATGGCA+AGG | - | chr5.3:22789982-22790001 | MS.gene53448:intron | 50.0% | |
| CAATTCCTTCCCTGCATCAC+AGG | + | chr5.3:22791828-22791847 | None:intergenic | 50.0% | |
| CAGCCATTCGCTTCCAAATC+CGG | + | chr5.3:22789793-22789812 | None:intergenic | 50.0% | |
| CCACATTGCCCACAGAGATA+TGG | - | chr5.3:22790578-22790597 | MS.gene53448:intron | 50.0% | |
| CCATATCTCTGTGGGCAATG+TGG | + | chr5.3:22790581-22790600 | None:intergenic | 50.0% | |
| CGACATTATGAGATCGGTGG+AGG | - | chr5.3:22791884-22791903 | MS.gene53448:CDS | 50.0% | |
| CGTGTATTGGATGTCTGCTG+TGG | - | chr5.3:22789929-22789948 | MS.gene53448:CDS | 50.0% | |
| CTGTGATGCAGGGAAGGAAT+TGG | - | chr5.3:22791826-22791845 | MS.gene53448:intron | 50.0% | |
| GCAACCCAAACGCCGTAATT+AGG | + | chr5.3:22790207-22790226 | None:intergenic | 50.0% | |
| GCTCGACATTATGAGATCGG+TGG | - | chr5.3:22791881-22791900 | MS.gene53448:CDS | 50.0% | |
| GCTGCCTAATTACGGCGTTT+GGG | - | chr5.3:22790200-22790219 | MS.gene53448:intron | 50.0% | |
| GGCCATAAACAGAGGCTACA+GGG | + | chr5.3:22791588-22791607 | None:intergenic | 50.0% | |
| GTCCCTGTAGCCTCTGTTTA+TGG | - | chr5.3:22791583-22791602 | MS.gene53448:CDS | 50.0% | |
| GTCGGTCGGAATGAAGGATA+AGG | + | chr5.3:22789603-22789622 | None:intergenic | 50.0% | |
| TGCCCCTAGCTGCCTAATTA+CGG | - | chr5.3:22790192-22790211 | MS.gene53448:intron | 50.0% | |
| TTGGAGCAGCGAATGGAAGT+CGG | + | chr5.3:22789621-22789640 | None:intergenic | 50.0% | |
| TTGGATGTCTGCTGTGGAAG+TGG | - | chr5.3:22789935-22789954 | MS.gene53448:CDS | 50.0% | |
| ! | CTTTGAAAGCGACCGTGATG+AGG | + | chr5.3:22790849-22790868 | None:intergenic | 50.0% |
| ! | GACCGGAGAGAGTACAATGA+AGG | + | chr5.3:22790229-22790248 | None:intergenic | 50.0% |
| ! | GATTCTTTGGTGTGAGCGGA+AGG | - | chr5.3:22791513-22791532 | MS.gene53448:intron | 50.0% |
| ! | GGTCGTATCTCTAGGGAATG+TGG | + | chr5.3:22790436-22790455 | None:intergenic | 50.0% |
| !! | CCCATTTCTCGTTCTAGGAG+TGG | - | chr5.3:22791542-22791561 | MS.gene53448:CDS | 50.0% |
| !! | GGAAGCGAATGGCTGTTTCT+TGG | - | chr5.3:22789798-22789817 | MS.gene53448:intron | 50.0% |
| !! | GTACATCCTAGGTGGGTTGA+AGG | - | chr5.3:22791105-22791124 | MS.gene53448:intron | 50.0% |
| AAGGATAAGGAGCAACCGCC+GGG | + | chr5.3:22789590-22789609 | None:intergenic | 55.0% | |
| AGAGCTTGCCTTGCCATTGG+AGG | + | chr5.3:22789993-22790012 | None:intergenic | 55.0% | |
| AGCAGCGAATGGAAGTCGGT+CGG | + | chr5.3:22789617-22789636 | None:intergenic | 55.0% | |
| CGCCGTAATTAGGCAGCTAG+GGG | + | chr5.3:22790197-22790216 | None:intergenic | 55.0% | |
| GAAGGATAAGGAGCAACCGC+CGG | + | chr5.3:22789591-22789610 | None:intergenic | 55.0% | |
| GCACCGGATTTGGAAGCGAA+TGG | - | chr5.3:22789787-22789806 | MS.gene53448:intron | 55.0% | |
| GCATCACCTTCAACCCACCT+AGG | + | chr5.3:22791114-22791133 | None:intergenic | 55.0% | |
| GGGCGCACGTTATCATAGAC+AGG | + | chr5.3:22789675-22789694 | None:intergenic | 55.0% | |
| GTGTTGGAAGCTACTCCCTC+CGG | + | chr5.3:22790377-22790396 | None:intergenic | 55.0% | |
| TAGCTACCAAGCACCCCATG+AGG | + | chr5.3:22791910-22791929 | None:intergenic | 55.0% | |
| !! | TGCGGTTGAAAAGCGCCTGT+CGG | + | chr5.3:22789647-22789666 | None:intergenic | 55.0% |
| AGATCGGTGGAGGCCTCATG+GGG | - | chr5.3:22791894-22791913 | MS.gene53448:CDS | 60.0% | |
| GAGATCGGTGGAGGCCTCAT+GGG | - | chr5.3:22791893-22791912 | MS.gene53448:CDS | 60.0% | |
| TCGGTCGTTGGAGCAGCGAA+TGG | + | chr5.3:22789628-22789647 | None:intergenic | 60.0% | |
| TGAGATCGGTGGAGGCCTCA+TGG | - | chr5.3:22791892-22791911 | MS.gene53448:CDS | 60.0% | |
| TGCTGAGCTTGGGTCAGCAC+CGG | - | chr5.3:22789771-22789790 | MS.gene53448:intron | 60.0% | |
| ! | CTAGGGGCACACCGCAATGA+AGG | + | chr5.3:22790181-22790200 | None:intergenic | 60.0% |
| ! | GCTTGGGTCAGCACCGGATT+TGG | - | chr5.3:22789777-22789796 | MS.gene53448:intron | 60.0% |
| !! | GAAAAGCGCCTGTCGGTCGT+TGG | + | chr5.3:22789640-22789659 | None:intergenic | 60.0% |
| GGGGCACACCGCAATGAAGG+TGG | + | chr5.3:22790178-22790197 | None:intergenic | 65.0% | |
| TCGCTGCTCCAACGACCGAC+AGG | - | chr5.3:22789629-22789648 | MS.gene53448:CDS | 65.0% | |
| ! | TGGAGGCCTCATGGGGTGCT+TGG | - | chr5.3:22791901-22791920 | MS.gene53448:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 22789582 | 22791937 | 22789582 | ID=MS.gene53448 |
| chr5.3 | mRNA | 22789582 | 22791937 | 22789582 | ID=MS.gene53448.t1;Parent=MS.gene53448 |
| chr5.3 | exon | 22791833 | 22791937 | 22791833 | ID=MS.gene53448.t1.exon1;Parent=MS.gene53448.t1 |
| chr5.3 | CDS | 22791833 | 22791937 | 22791833 | ID=cds.MS.gene53448.t1;Parent=MS.gene53448.t1 |
| chr5.3 | exon | 22791694 | 22791758 | 22791694 | ID=MS.gene53448.t1.exon2;Parent=MS.gene53448.t1 |
| chr5.3 | CDS | 22791694 | 22791758 | 22791694 | ID=cds.MS.gene53448.t1;Parent=MS.gene53448.t1 |
| chr5.3 | exon | 22791516 | 22791606 | 22791516 | ID=MS.gene53448.t1.exon3;Parent=MS.gene53448.t1 |
| chr5.3 | CDS | 22791516 | 22791606 | 22791516 | ID=cds.MS.gene53448.t1;Parent=MS.gene53448.t1 |
| chr5.3 | exon | 22790631 | 22790713 | 22790631 | ID=MS.gene53448.t1.exon4;Parent=MS.gene53448.t1 |
| chr5.3 | CDS | 22790631 | 22790713 | 22790631 | ID=cds.MS.gene53448.t1;Parent=MS.gene53448.t1 |
| chr5.3 | exon | 22790270 | 22790403 | 22790270 | ID=MS.gene53448.t1.exon5;Parent=MS.gene53448.t1 |
| chr5.3 | CDS | 22790270 | 22790403 | 22790270 | ID=cds.MS.gene53448.t1;Parent=MS.gene53448.t1 |
| chr5.3 | exon | 22790128 | 22790189 | 22790128 | ID=MS.gene53448.t1.exon6;Parent=MS.gene53448.t1 |
| chr5.3 | CDS | 22790128 | 22790189 | 22790128 | ID=cds.MS.gene53448.t1;Parent=MS.gene53448.t1 |
| chr5.3 | exon | 22789861 | 22789960 | 22789861 | ID=MS.gene53448.t1.exon7;Parent=MS.gene53448.t1 |
| chr5.3 | CDS | 22789861 | 22789960 | 22789861 | ID=cds.MS.gene53448.t1;Parent=MS.gene53448.t1 |
| chr5.3 | exon | 22789582 | 22789682 | 22789582 | ID=MS.gene53448.t1.exon8;Parent=MS.gene53448.t1 |
| chr5.3 | CDS | 22789582 | 22789682 | 22789582 | ID=cds.MS.gene53448.t1;Parent=MS.gene53448.t1 |
| Gene Sequence |
| Protein sequence |
