Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027119.t1 | XP_003600055.1 | 90.4 | 311 | 30 | 0 | 1 | 311 | 1 | 311 | 4.30E-163 | 583.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027119.t1 | Q9SZ42 | 57.6 | 302 | 101 | 2 | 26 | 308 | 27 | 320 | 4.7e-102 | 372.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027119.t1 | G7IXK5 | 90.4 | 311 | 30 | 0 | 1 | 311 | 1 | 311 | 3.1e-163 | 583.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027119 | MS.gene30149 | PPI |
| MS.gene30149 | MS.gene027119 | PPI |
| MS.gene027119 | MS.gene94356 | PPI |
| MS.gene027119 | MS.gene30150 | PPI |
| MS.gene94356 | MS.gene027119 | PPI |
| MS.gene027119 | MS.gene82707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027119.t1 | MTR_3g051220 | 96.463 | 311 | 11 | 0 | 1 | 311 | 1 | 311 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027119.t1 | AT4G27030 | 60.526 | 304 | 89 | 2 | 26 | 308 | 27 | 320 | 1.02e-139 | 398 |
| MS.gene027119.t1 | AT1G62190 | 56.071 | 280 | 107 | 2 | 26 | 305 | 25 | 288 | 1.63e-120 | 348 |
| MS.gene027119.t1 | AT2G22890 | 60.547 | 256 | 90 | 2 | 45 | 299 | 34 | 279 | 1.41e-115 | 335 |
Find 108 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCCATCGAACCTTTAA+TGG | 0.128810 | 3.4:+48420487 | None:intergenic |
| CATTGGGCCATTGATAATTA+TGG | 0.152142 | 3.4:-48420392 | MS.gene027119:CDS |
| GGCCTTGGAAAGCTTCAATT+TGG | 0.208933 | 3.4:+48420342 | None:intergenic |
| TAGCATTGGGCTTGGACTTC+AGG | 0.233568 | 3.4:+48420669 | None:intergenic |
| TCGTTGGGAGAGTCCATTAA+AGG | 0.296680 | 3.4:-48420500 | MS.gene027119:CDS |
| GGTTACATCTTAGCTGATCT+TGG | 0.300492 | 3.4:-48420428 | MS.gene027119:CDS |
| CCAACAAAACTTTGAACAAT+AGG | 0.307472 | 3.4:+48420209 | None:intergenic |
| ATGCAATAATTATTGTTATA+CGG | 0.313977 | 3.4:+48420041 | None:intergenic |
| ATTGGCGGTCGTGCAAGTTT+CGG | 0.325462 | 3.4:+48420629 | None:intergenic |
| GCCTTGGAAAGCTTCAATTT+GGG | 0.372297 | 3.4:+48420343 | None:intergenic |
| CTTGTGTCACGGTCGCAACA+TGG | 0.382860 | 3.4:-48420080 | MS.gene027119:CDS |
| AATGGACAATGACCCTAGTT+TGG | 0.384966 | 3.4:-48420579 | MS.gene027119:CDS |
| ATGATATTGTATTTCAAACT+TGG | 0.395567 | 3.4:-48419960 | MS.gene027119:CDS |
| GTTACATCTTAGCTGATCTT+GGG | 0.396076 | 3.4:-48420427 | MS.gene027119:CDS |
| CCAATCCAACCTGCCACAAT+AGG | 0.396466 | 3.4:+48420449 | None:intergenic |
| GAAAGAAGGGATCTTAGGTT+TGG | 0.398872 | 3.4:+48419868 | None:intergenic |
| CACAACATTGCTCATTTCGT+TGG | 0.401615 | 3.4:-48420516 | MS.gene027119:CDS |
| CAATTGATTAGCATTGGGCT+TGG | 0.402702 | 3.4:+48420661 | None:intergenic |
| CAATTTCATGCATGGGCTCA+TGG | 0.404441 | 3.4:-48420155 | MS.gene027119:CDS |
| CGGAGCAATTGACGCGAATT+CGG | 0.404513 | 3.4:+48420723 | None:intergenic |
| CCTATTGTGGCAGGTTGGAT+TGG | 0.412756 | 3.4:-48420449 | MS.gene027119:CDS |
| CAATTTGGGCACCAACCAAT+GGG | 0.415017 | 3.4:+48420357 | None:intergenic |
| TGTATTTCAAACTTGGGGTC+AGG | 0.426129 | 3.4:-48419953 | MS.gene027119:CDS |
| ATGATCAATTGATTAGCATT+GGG | 0.426195 | 3.4:+48420656 | None:intergenic |
| TGGTAGCTCTGCAAGACAGC+GGG | 0.430058 | 3.4:-48420106 | MS.gene027119:CDS |
| TGATATTGTATTTCAAACTT+GGG | 0.432835 | 3.4:-48419959 | MS.gene027119:CDS |
| TTGGGTCCGGAGTTTACCAT+TGG | 0.438101 | 3.4:-48420409 | MS.gene027119:CDS |
| AATGATCAATTGATTAGCAT+TGG | 0.438397 | 3.4:+48420655 | None:intergenic |
| TTGTGTCACGGTCGCAACAT+GGG | 0.442683 | 3.4:-48420079 | MS.gene027119:CDS |
| TCATGGAAAAGAAGATTGAT+AGG | 0.446735 | 3.4:+48420233 | None:intergenic |
| AATAATTATTGCATAGTAAG+TGG | 0.447132 | 3.4:-48420032 | MS.gene027119:CDS |
| TCAAACTTGGGGTCAGGCCT+AGG | 0.448580 | 3.4:-48419947 | MS.gene027119:CDS |
| CGCAACATGGGGCACACCAC+CGG | 0.450199 | 3.4:-48420067 | MS.gene027119:CDS |
| ATCTTAGCTGATCTTGGGTC+CGG | 0.450717 | 3.4:-48420422 | MS.gene027119:CDS |
| CAACAAAACTTTGAACAATA+GGG | 0.456010 | 3.4:+48420210 | None:intergenic |
| ACGGCCACTTATGATGGCCT+TGG | 0.469320 | 3.4:+48420327 | None:intergenic |
| GGGCTTGGACTTCAGGGCAG+TGG | 0.471613 | 3.4:+48420676 | None:intergenic |
| AGCATTGGGCTTGGACTTCA+GGG | 0.478698 | 3.4:+48420670 | None:intergenic |
| GAAAACTTGGTGGTGAAAGC+TGG | 0.480653 | 3.4:+48420766 | None:intergenic |
| TCCTCTATCCACTCAGAAGA+AGG | 0.484874 | 3.4:+48419912 | None:intergenic |
| TTGGCTAAACATAATACAAC+CGG | 0.486952 | 3.4:+48420178 | None:intergenic |
| ACAACATTGCTCATTTCGTT+GGG | 0.487853 | 3.4:-48420515 | MS.gene027119:CDS |
| TGCGAGTGAGTGCAAATTGT+TGG | 0.491754 | 3.4:+48420280 | None:intergenic |
| GACCATGTTGATTCCAAACT+AGG | 0.495633 | 3.4:+48420566 | None:intergenic |
| TAGCCAACAATTTCATGCAT+GGG | 0.501565 | 3.4:-48420162 | MS.gene027119:CDS |
| TCAATTTGGGCACCAACCAA+TGG | 0.503580 | 3.4:+48420356 | None:intergenic |
| AAGACACTTGTGTTGGACTA+AGG | 0.508363 | 3.4:+48420790 | None:intergenic |
| GAGCCCATGCATGAAATTGT+TGG | 0.514086 | 3.4:+48420159 | None:intergenic |
| TAGTCCACGGCCACTTATGA+TGG | 0.515675 | 3.4:+48420321 | None:intergenic |
| TGGAGCCTATTGTGGCAGGT+TGG | 0.518996 | 3.4:-48420454 | MS.gene027119:CDS |
| TGGAGACGGGTCAACCCCAT+TGG | 0.521376 | 3.4:-48420372 | MS.gene027119:CDS |
| GCCATTGATAATTATGGAGA+CGG | 0.521610 | 3.4:-48420386 | MS.gene027119:CDS |
| CAACATGGTCTCATCGAGCA+TGG | 0.522244 | 3.4:-48420553 | MS.gene027119:CDS |
| TGGGTCCGGAGTTTACCATT+GGG | 0.524693 | 3.4:-48420408 | MS.gene027119:CDS |
| CCCGTCTCCATAATTATCAA+TGG | 0.530151 | 3.4:+48420385 | None:intergenic |
| TTGGGGTCAGGCCTAGGTCA+TGG | 0.530441 | 3.4:-48419941 | MS.gene027119:CDS |
| GCCTTCTTCTGAGTGGATAG+AGG | 0.532572 | 3.4:-48419913 | MS.gene027119:CDS |
| AAACTAGGGTCATTGTCCAT+TGG | 0.532832 | 3.4:+48420581 | None:intergenic |
| TTTGCACTCACTCGCACGTA+TGG | 0.534993 | 3.4:-48420273 | MS.gene027119:CDS |
| TGCACGACCGCCAATAAAAG+TGG | 0.536589 | 3.4:-48420621 | MS.gene027119:CDS |
| AATTTCATGCATGGGCTCAT+GGG | 0.536888 | 3.4:-48420154 | MS.gene027119:CDS |
| AATTATTGTTATACGGCGGC+CGG | 0.539022 | 3.4:+48420048 | None:intergenic |
| CATAATTATCAATGGCCCAA+TGG | 0.547046 | 3.4:+48420393 | None:intergenic |
| AGTATCAGTGGTAGTGGTGG+CGG | 0.547623 | 3.4:+48420703 | None:intergenic |
| TAGAGTTCTTTGTGAAAACT+TGG | 0.549033 | 3.4:+48420753 | None:intergenic |
| GTTCGATGGATATGAATATG+TGG | 0.552737 | 3.4:-48420478 | MS.gene027119:CDS |
| AAGGCCATCATAAGTGGCCG+TGG | 0.552800 | 3.4:-48420325 | MS.gene027119:CDS |
| CATCGAGCATGGGTGACAGT+TGG | 0.553692 | 3.4:-48420542 | MS.gene027119:CDS |
| TGGGTGGAGCCTATTGTGGC+AGG | 0.553913 | 3.4:-48420458 | MS.gene027119:CDS |
| TTAGCCAACAATTTCATGCA+TGG | 0.554178 | 3.4:-48420163 | MS.gene027119:CDS |
| GACGGGTCAACCCCATTGGT+TGG | 0.555304 | 3.4:-48420368 | MS.gene027119:CDS |
| TATTGTTATACGGCGGCCGG+TGG | 0.555619 | 3.4:+48420051 | None:intergenic |
| CTTTCCAAGGCCATCATAAG+TGG | 0.559970 | 3.4:-48420331 | MS.gene027119:CDS |
| AGCTGGGAAGACACTTGTGT+TGG | 0.564987 | 3.4:+48420783 | None:intergenic |
| AACTGATGCTAACCGTCCAA+TGG | 0.569213 | 3.4:-48420597 | MS.gene027119:CDS |
| GATATTGTATTTCAAACTTG+GGG | 0.574716 | 3.4:-48419958 | MS.gene027119:CDS |
| TGTGTCACGGTCGCAACATG+GGG | 0.574793 | 3.4:-48420078 | MS.gene027119:CDS |
| GCCCAAATTGAAGCTTTCCA+AGG | 0.575990 | 3.4:-48420344 | MS.gene027119:CDS |
| ACAGCGGGGTGCTTGTGTCA+CGG | 0.577630 | 3.4:-48420091 | MS.gene027119:CDS |
| AACATGGTCTCATCGAGCAT+GGG | 0.579331 | 3.4:-48420552 | MS.gene027119:CDS |
| GGCATGAGTATCAGTGGTAG+TGG | 0.581600 | 3.4:+48420697 | None:intergenic |
| AGAGTCCATTAAAGGTTCGA+TGG | 0.586164 | 3.4:-48420492 | MS.gene027119:CDS |
| AACTTTGAACAATAGGGTCA+TGG | 0.591159 | 3.4:+48420216 | None:intergenic |
| AAAACTTGGTGGTGAAAGCT+GGG | 0.597144 | 3.4:+48420767 | None:intergenic |
| TGCAGAGCTACCACGAGCGG+TGG | 0.597300 | 3.4:+48420116 | None:intergenic |
| ACCATGTTGATTCCAAACTA+GGG | 0.597315 | 3.4:+48420567 | None:intergenic |
| CCATTGATAATTATGGAGAC+GGG | 0.597890 | 3.4:-48420385 | MS.gene027119:CDS |
| GGGCTCATGGGACAAAGAGT+AGG | 0.597966 | 3.4:-48420142 | MS.gene027119:CDS |
| TTCGATGGATATGAATATGT+GGG | 0.600883 | 3.4:-48420477 | MS.gene027119:CDS |
| AGCAATTGACGCGAATTCGG+TGG | 0.602094 | 3.4:+48420726 | None:intergenic |
| GAGTAGGCTTCCACCGCTCG+TGG | 0.605399 | 3.4:-48420126 | MS.gene027119:CDS |
| GGCAGTGGCATGAGTATCAG+TGG | 0.608079 | 3.4:+48420691 | None:intergenic |
| GAAGGCTCACTCCATGACCT+AGG | 0.616374 | 3.4:+48419930 | None:intergenic |
| TCTTGCAGAGCTACCACGAG+CGG | 0.618762 | 3.4:+48420113 | None:intergenic |
| ATTGCATAGTAAGTGGAGTG+TGG | 0.622359 | 3.4:-48420025 | MS.gene027119:CDS |
| TAGGGTCATTGTCCATTGGA+CGG | 0.625760 | 3.4:+48420585 | None:intergenic |
| GTGGTAGCTCTGCAAGACAG+CGG | 0.633692 | 3.4:-48420107 | MS.gene027119:CDS |
| AGTTCTTTGTGAAAACTTGG+TGG | 0.635979 | 3.4:+48420756 | None:intergenic |
| AATGGCCCAATGGTAAACTC+CGG | 0.657151 | 3.4:+48420403 | None:intergenic |
| GGAGTGAGCCTTCTTCTGAG+TGG | 0.666960 | 3.4:-48419920 | MS.gene027119:CDS |
| ACCCTAGTTTGGAATCAACA+TGG | 0.676174 | 3.4:-48420568 | MS.gene027119:CDS |
| ATGAGTATCAGTGGTAGTGG+TGG | 0.676996 | 3.4:+48420700 | None:intergenic |
| GGTAGCTCTGCAAGACAGCG+GGG | 0.678989 | 3.4:-48420105 | MS.gene027119:CDS |
| CAATAATTATTGTTATACGG+CGG | 0.684485 | 3.4:+48420044 | None:intergenic |
| TGACGCTTAGTAATAGTCCA+CGG | 0.686492 | 3.4:+48420308 | None:intergenic |
| TATGTGGGTGGAGCCTATTG+TGG | 0.686763 | 3.4:-48420462 | MS.gene027119:CDS |
| AATTTGGGCACCAACCAATG+GGG | 0.702858 | 3.4:+48420358 | None:intergenic |
| GATGGATATGAATATGTGGG+TGG | 0.713715 | 3.4:-48420474 | MS.gene027119:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCAATAATTATTGTTATA+CGG | + | chr3.4:48420640-48420659 | None:intergenic | 15.0% |
| !! | AATAATTATTGCATAGTAAG+TGG | - | chr3.4:48420646-48420665 | MS.gene027119:CDS | 20.0% |
| !! | ATGATATTGTATTTCAAACT+TGG | - | chr3.4:48420718-48420737 | MS.gene027119:CDS | 20.0% |
| !! | TGATATTGTATTTCAAACTT+GGG | - | chr3.4:48420719-48420738 | MS.gene027119:CDS | 20.0% |
| ! | AATGATCAATTGATTAGCAT+TGG | + | chr3.4:48420026-48420045 | None:intergenic | 25.0% |
| ! | ATGATCAATTGATTAGCATT+GGG | + | chr3.4:48420025-48420044 | None:intergenic | 25.0% |
| ! | CAACAAAACTTTGAACAATA+GGG | + | chr3.4:48420471-48420490 | None:intergenic | 25.0% |
| ! | CAATAATTATTGTTATACGG+CGG | + | chr3.4:48420637-48420656 | None:intergenic | 25.0% |
| ! | GATATTGTATTTCAAACTTG+GGG | - | chr3.4:48420720-48420739 | MS.gene027119:CDS | 25.0% |
| !!! | CTATTGTTCAAAGTTTTGTT+GGG | - | chr3.4:48420470-48420489 | MS.gene027119:CDS | 25.0% |
| !!! | TATTGTTCAAAGTTTTGTTG+GGG | - | chr3.4:48420471-48420490 | MS.gene027119:CDS | 25.0% |
| CCAACAAAACTTTGAACAAT+AGG | + | chr3.4:48420472-48420491 | None:intergenic | 30.0% | |
| TAGAGTTCTTTGTGAAAACT+TGG | + | chr3.4:48419928-48419947 | None:intergenic | 30.0% | |
| TCATGGAAAAGAAGATTGAT+AGG | + | chr3.4:48420448-48420467 | None:intergenic | 30.0% | |
| TTCGATGGATATGAATATGT+GGG | - | chr3.4:48420201-48420220 | MS.gene027119:CDS | 30.0% | |
| TTGGCTAAACATAATACAAC+CGG | + | chr3.4:48420503-48420522 | None:intergenic | 30.0% | |
| !! | CCTATTGTTCAAAGTTTTGT+TGG | - | chr3.4:48420469-48420488 | MS.gene027119:CDS | 30.0% |
| !!! | AACTAAAGCTTTTGAAGCTA+TGG | - | chr3.4:48420693-48420712 | MS.gene027119:CDS | 30.0% |
| AACTTTGAACAATAGGGTCA+TGG | + | chr3.4:48420465-48420484 | None:intergenic | 35.0% | |
| ACAACATTGCTCATTTCGTT+GGG | - | chr3.4:48420163-48420182 | MS.gene027119:CDS | 35.0% | |
| AGTTCTTTGTGAAAACTTGG+TGG | + | chr3.4:48419925-48419944 | None:intergenic | 35.0% | |
| CATAATTATCAATGGCCCAA+TGG | + | chr3.4:48420288-48420307 | None:intergenic | 35.0% | |
| CATATCCATCGAACCTTTAA+TGG | + | chr3.4:48420194-48420213 | None:intergenic | 35.0% | |
| GTTACATCTTAGCTGATCTT+GGG | - | chr3.4:48420251-48420270 | MS.gene027119:CDS | 35.0% | |
| GTTCGATGGATATGAATATG+TGG | - | chr3.4:48420200-48420219 | MS.gene027119:CDS | 35.0% | |
| TAGCCAACAATTTCATGCAT+GGG | - | chr3.4:48420516-48420535 | MS.gene027119:CDS | 35.0% | |
| TTAGCCAACAATTTCATGCA+TGG | - | chr3.4:48420515-48420534 | MS.gene027119:CDS | 35.0% | |
| ! | CATTGGGCCATTGATAATTA+TGG | - | chr3.4:48420286-48420305 | MS.gene027119:CDS | 35.0% |
| ! | CCATTGATAATTATGGAGAC+GGG | - | chr3.4:48420293-48420312 | MS.gene027119:CDS | 35.0% |
| ! | GCCATTGATAATTATGGAGA+CGG | - | chr3.4:48420292-48420311 | MS.gene027119:CDS | 35.0% |
| !! | ACCATGTTGATTCCAAACTA+GGG | + | chr3.4:48420114-48420133 | None:intergenic | 35.0% |
| !! | GCATCAGTTACCACTTTTAT+TGG | + | chr3.4:48420070-48420089 | None:intergenic | 35.0% |
| !! | TCAGTTACCACTTTTATTGG+CGG | + | chr3.4:48420067-48420086 | None:intergenic | 35.0% |
| AAACTAGGGTCATTGTCCAT+TGG | + | chr3.4:48420100-48420119 | None:intergenic | 40.0% | |
| AAGACACTTGTGTTGGACTA+AGG | + | chr3.4:48419891-48419910 | None:intergenic | 40.0% | |
| AATGGACAATGACCCTAGTT+TGG | - | chr3.4:48420099-48420118 | MS.gene027119:CDS | 40.0% | |
| AATTATTGTTATACGGCGGC+CGG | + | chr3.4:48420633-48420652 | None:intergenic | 40.0% | |
| AATTTCATGCATGGGCTCAT+GGG | - | chr3.4:48420524-48420543 | MS.gene027119:CDS | 40.0% | |
| AGAGTCCATTAAAGGTTCGA+TGG | - | chr3.4:48420186-48420205 | MS.gene027119:CDS | 40.0% | |
| ATTGCATAGTAAGTGGAGTG+TGG | - | chr3.4:48420653-48420672 | MS.gene027119:CDS | 40.0% | |
| CACAACATTGCTCATTTCGT+TGG | - | chr3.4:48420162-48420181 | MS.gene027119:CDS | 40.0% | |
| CCCGTCTCCATAATTATCAA+TGG | + | chr3.4:48420296-48420315 | None:intergenic | 40.0% | |
| GATGGATATGAATATGTGGG+TGG | - | chr3.4:48420204-48420223 | MS.gene027119:CDS | 40.0% | |
| GCCTTGGAAAGCTTCAATTT+GGG | + | chr3.4:48420338-48420357 | None:intergenic | 40.0% | |
| GGTTACATCTTAGCTGATCT+TGG | - | chr3.4:48420250-48420269 | MS.gene027119:CDS | 40.0% | |
| TGACGCTTAGTAATAGTCCA+CGG | + | chr3.4:48420373-48420392 | None:intergenic | 40.0% | |
| TGTATTTCAAACTTGGGGTC+AGG | - | chr3.4:48420725-48420744 | MS.gene027119:CDS | 40.0% | |
| ! | ACCCTAGTTTGGAATCAACA+TGG | - | chr3.4:48420110-48420129 | MS.gene027119:CDS | 40.0% |
| ! | CAATTGATTAGCATTGGGCT+TGG | + | chr3.4:48420020-48420039 | None:intergenic | 40.0% |
| ! | TGGAGTGTGGAATGAGTTTT+TGG | - | chr3.4:48420666-48420685 | MS.gene027119:CDS | 40.0% |
| !! | AAAACTTGGTGGTGAAAGCT+GGG | + | chr3.4:48419914-48419933 | None:intergenic | 40.0% |
| !! | GACCATGTTGATTCCAAACT+AGG | + | chr3.4:48420115-48420134 | None:intergenic | 40.0% |
| AACATGGTCTCATCGAGCAT+GGG | - | chr3.4:48420126-48420145 | MS.gene027119:CDS | 45.0% | |
| AACTGATGCTAACCGTCCAA+TGG | - | chr3.4:48420081-48420100 | MS.gene027119:CDS | 45.0% | |
| AATGGCCCAATGGTAAACTC+CGG | + | chr3.4:48420278-48420297 | None:intergenic | 45.0% | |
| AATTTGGGCACCAACCAATG+GGG | + | chr3.4:48420323-48420342 | None:intergenic | 45.0% | |
| ATCTTAGCTGATCTTGGGTC+CGG | - | chr3.4:48420256-48420275 | MS.gene027119:CDS | 45.0% | |
| CAATTTCATGCATGGGCTCA+TGG | - | chr3.4:48420523-48420542 | MS.gene027119:CDS | 45.0% | |
| CAATTTGGGCACCAACCAAT+GGG | + | chr3.4:48420324-48420343 | None:intergenic | 45.0% | |
| CTTTCCAAGGCCATCATAAG+TGG | - | chr3.4:48420347-48420366 | MS.gene027119:CDS | 45.0% | |
| GAGCCCATGCATGAAATTGT+TGG | + | chr3.4:48420522-48420541 | None:intergenic | 45.0% | |
| GCCCAAATTGAAGCTTTCCA+AGG | - | chr3.4:48420334-48420353 | MS.gene027119:CDS | 45.0% | |
| GGCCTTGGAAAGCTTCAATT+TGG | + | chr3.4:48420339-48420358 | None:intergenic | 45.0% | |
| TAGGGTCATTGTCCATTGGA+CGG | + | chr3.4:48420096-48420115 | None:intergenic | 45.0% | |
| TCAATTTGGGCACCAACCAA+TGG | + | chr3.4:48420325-48420344 | None:intergenic | 45.0% | |
| TCCTCTATCCACTCAGAAGA+AGG | + | chr3.4:48420769-48420788 | None:intergenic | 45.0% | |
| TCGTTGGGAGAGTCCATTAA+AGG | - | chr3.4:48420178-48420197 | MS.gene027119:CDS | 45.0% | |
| TGCGAGTGAGTGCAAATTGT+TGG | + | chr3.4:48420401-48420420 | None:intergenic | 45.0% | |
| !! | ATGAGTATCAGTGGTAGTGG+TGG | + | chr3.4:48419981-48420000 | None:intergenic | 45.0% |
| !! | GAAAACTTGGTGGTGAAAGC+TGG | + | chr3.4:48419915-48419934 | None:intergenic | 45.0% |
| AGCAATTGACGCGAATTCGG+TGG | + | chr3.4:48419955-48419974 | None:intergenic | 50.0% | |
| AGCTGGGAAGACACTTGTGT+TGG | + | chr3.4:48419898-48419917 | None:intergenic | 50.0% | |
| ATTGGCGGTCGTGCAAGTTT+CGG | + | chr3.4:48420052-48420071 | None:intergenic | 50.0% | |
| CAACATGGTCTCATCGAGCA+TGG | - | chr3.4:48420125-48420144 | MS.gene027119:CDS | 50.0% | |
| CCAATCCAACCTGCCACAAT+AGG | + | chr3.4:48420232-48420251 | None:intergenic | 50.0% | |
| CGGAGCAATTGACGCGAATT+CGG | + | chr3.4:48419958-48419977 | None:intergenic | 50.0% | |
| GCCTTCTTCTGAGTGGATAG+AGG | - | chr3.4:48420765-48420784 | MS.gene027119:CDS | 50.0% | |
| GGCATGAGTATCAGTGGTAG+TGG | + | chr3.4:48419984-48420003 | None:intergenic | 50.0% | |
| TAGTCCACGGCCACTTATGA+TGG | + | chr3.4:48420360-48420379 | None:intergenic | 50.0% | |
| TATGTGGGTGGAGCCTATTG+TGG | - | chr3.4:48420216-48420235 | MS.gene027119:CDS | 50.0% | |
| TGCACGACCGCCAATAAAAG+TGG | - | chr3.4:48420057-48420076 | MS.gene027119:CDS | 50.0% | |
| TGGGTCCGGAGTTTACCATT+GGG | - | chr3.4:48420270-48420289 | MS.gene027119:CDS | 50.0% | |
| TTGGGTCCGGAGTTTACCAT+TGG | - | chr3.4:48420269-48420288 | MS.gene027119:CDS | 50.0% | |
| TTGTGTCACGGTCGCAACAT+GGG | - | chr3.4:48420599-48420618 | MS.gene027119:CDS | 50.0% | |
| TTTGCACTCACTCGCACGTA+TGG | - | chr3.4:48420405-48420424 | MS.gene027119:CDS | 50.0% | |
| ! | AGCATTGGGCTTGGACTTCA+GGG | + | chr3.4:48420011-48420030 | None:intergenic | 50.0% |
| ! | CCTATTGTGGCAGGTTGGAT+TGG | - | chr3.4:48420229-48420248 | MS.gene027119:CDS | 50.0% |
| ! | TAGCATTGGGCTTGGACTTC+AGG | + | chr3.4:48420012-48420031 | None:intergenic | 50.0% |
| !! | AGTATCAGTGGTAGTGGTGG+CGG | + | chr3.4:48419978-48419997 | None:intergenic | 50.0% |
| !!! | AGTTTTGTTGGGGTGTGTGC+CGG | - | chr3.4:48420481-48420500 | MS.gene027119:CDS | 50.0% |
| AAGGCCATCATAAGTGGCCG+TGG | - | chr3.4:48420353-48420372 | MS.gene027119:CDS | 55.0% | |
| ACGGCCACTTATGATGGCCT+TGG | + | chr3.4:48420354-48420373 | None:intergenic | 55.0% | |
| CATCGAGCATGGGTGACAGT+TGG | - | chr3.4:48420136-48420155 | MS.gene027119:CDS | 55.0% | |
| CTTGTGTCACGGTCGCAACA+TGG | - | chr3.4:48420598-48420617 | MS.gene027119:CDS | 55.0% | |
| GAAGGCTCACTCCATGACCT+AGG | + | chr3.4:48420751-48420770 | None:intergenic | 55.0% | |
| GGAGTGAGCCTTCTTCTGAG+TGG | - | chr3.4:48420758-48420777 | MS.gene027119:CDS | 55.0% | |
| GGCAGTGGCATGAGTATCAG+TGG | + | chr3.4:48419990-48420009 | None:intergenic | 55.0% | |
| GGGCTCATGGGACAAAGAGT+AGG | - | chr3.4:48420536-48420555 | MS.gene027119:CDS | 55.0% | |
| TATTGTTATACGGCGGCCGG+TGG | + | chr3.4:48420630-48420649 | None:intergenic | 55.0% | |
| TCAAACTTGGGGTCAGGCCT+AGG | - | chr3.4:48420731-48420750 | MS.gene027119:CDS | 55.0% | |
| TCTTGCAGAGCTACCACGAG+CGG | + | chr3.4:48420568-48420587 | None:intergenic | 55.0% | |
| TGGAGCCTATTGTGGCAGGT+TGG | - | chr3.4:48420224-48420243 | MS.gene027119:CDS | 55.0% | |
| TGTGTCACGGTCGCAACATG+GGG | - | chr3.4:48420600-48420619 | MS.gene027119:CDS | 55.0% | |
| ! | GTGGTAGCTCTGCAAGACAG+CGG | - | chr3.4:48420571-48420590 | MS.gene027119:CDS | 55.0% |
| ! | TGGTAGCTCTGCAAGACAGC+GGG | - | chr3.4:48420572-48420591 | MS.gene027119:CDS | 55.0% |
| GACGGGTCAACCCCATTGGT+TGG | - | chr3.4:48420310-48420329 | MS.gene027119:CDS | 60.0% | |
| TGGAGACGGGTCAACCCCAT+TGG | - | chr3.4:48420306-48420325 | MS.gene027119:CDS | 60.0% | |
| TGGGTGGAGCCTATTGTGGC+AGG | - | chr3.4:48420220-48420239 | MS.gene027119:CDS | 60.0% | |
| TTGGGGTCAGGCCTAGGTCA+TGG | - | chr3.4:48420737-48420756 | MS.gene027119:CDS | 60.0% | |
| ! | ACAGCGGGGTGCTTGTGTCA+CGG | - | chr3.4:48420587-48420606 | MS.gene027119:CDS | 60.0% |
| ! | GGTAGCTCTGCAAGACAGCG+GGG | - | chr3.4:48420573-48420592 | MS.gene027119:CDS | 60.0% |
| CGCAACATGGGGCACACCAC+CGG | - | chr3.4:48420611-48420630 | MS.gene027119:CDS | 65.0% | |
| GAGTAGGCTTCCACCGCTCG+TGG | - | chr3.4:48420552-48420571 | MS.gene027119:CDS | 65.0% | |
| GGGCTTGGACTTCAGGGCAG+TGG | + | chr3.4:48420005-48420024 | None:intergenic | 65.0% | |
| TGCAGAGCTACCACGAGCGG+TGG | + | chr3.4:48420565-48420584 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 48419881 | 48420819 | 48419881 | ID=MS.gene027119 |
| chr3.4 | mRNA | 48419881 | 48420819 | 48419881 | ID=MS.gene027119.t1;Parent=MS.gene027119 |
| chr3.4 | exon | 48419881 | 48420819 | 48419881 | ID=MS.gene027119.t1.exon1;Parent=MS.gene027119.t1 |
| chr3.4 | CDS | 48419881 | 48420819 | 48419881 | ID=cds.MS.gene027119.t1;Parent=MS.gene027119.t1 |
| Gene Sequence |
| Protein sequence |
