Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30150.t1 | XP_003600055.1 | 86.2 | 311 | 32 | 1 | 1 | 300 | 1 | 311 | 2.40E-155 | 558.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30150.t1 | Q9SZ42 | 56.8 | 294 | 105 | 2 | 26 | 297 | 27 | 320 | 8.9e-98 | 358.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30150.t1 | G7IXK5 | 86.2 | 311 | 32 | 1 | 1 | 300 | 1 | 311 | 1.7e-155 | 558.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene30150 | 0.814565 | 1.44E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene30150 | 0.82179 | 3.35E-53 | -1.69E-46 |
| MS.gene049369 | MS.gene30150 | 0.82457 | 7.51E-54 | -1.69E-46 |
| MS.gene049396 | MS.gene30150 | 0.871643 | 5.85E-67 | -1.69E-46 |
| MS.gene049656 | MS.gene30150 | 0.80135 | 9.39E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene30150 | 0.816347 | 5.80E-52 | -1.69E-46 |
| MS.gene050380 | MS.gene30150 | -0.806839 | 6.77E-50 | -1.69E-46 |
| MS.gene050499 | MS.gene30150 | 0.851062 | 1.13E-60 | -1.69E-46 |
| MS.gene050502 | MS.gene30150 | 0.865252 | 6.76E-65 | -1.69E-46 |
| MS.gene050520 | MS.gene30150 | 0.822116 | 2.81E-53 | -1.69E-46 |
| MS.gene050697 | MS.gene30150 | 0.807807 | 4.22E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene30150 | 0.801999 | 6.91E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene30150 | 0.80596 | 1.04E-49 | -1.69E-46 |
| MS.gene051509 | MS.gene30150 | 0.862436 | 5.08E-64 | -1.69E-46 |
| MS.gene051874 | MS.gene30150 | 0.823141 | 1.62E-53 | -1.69E-46 |
| MS.gene051941 | MS.gene30150 | 0.82536 | 4.89E-54 | -1.69E-46 |
| MS.gene052346 | MS.gene30150 | 0.827399 | 1.60E-54 | -1.69E-46 |
| MS.gene052414 | MS.gene30150 | 0.825875 | 3.69E-54 | -1.69E-46 |
| MS.gene052966 | MS.gene30150 | 0.806484 | 8.04E-50 | -1.69E-46 |
| MS.gene052999 | MS.gene30150 | 0.827823 | 1.26E-54 | -1.69E-46 |
| MS.gene053018 | MS.gene30150 | 0.814528 | 1.47E-51 | -1.69E-46 |
| MS.gene053169 | MS.gene30150 | 0.817193 | 3.74E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene30150 | 0.807538 | 4.81E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene30150 | 0.838947 | 2.12E-57 | -1.69E-46 |
| MS.gene053505 | MS.gene30150 | 0.854365 | 1.29E-61 | -1.69E-46 |
| MS.gene053574 | MS.gene30150 | 0.821286 | 4.38E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene30150 | 0.839407 | 1.61E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene30150 | 0.82652 | 2.59E-54 | -1.69E-46 |
| MS.gene053889 | MS.gene30150 | 0.813698 | 2.24E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene30150 | 0.851059 | 1.14E-60 | -1.69E-46 |
| MS.gene054003 | MS.gene30150 | 0.801176 | 1.02E-48 | -1.69E-46 |
| MS.gene054486 | MS.gene30150 | 0.864722 | 9.91E-65 | -1.69E-46 |
| MS.gene054595 | MS.gene30150 | 0.833652 | 4.72E-56 | -1.69E-46 |
| MS.gene054742 | MS.gene30150 | -0.809576 | 1.77E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene30150 | 0.819136 | 1.36E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene30150 | 0.831884 | 1.30E-55 | -1.69E-46 |
| MS.gene055744 | MS.gene30150 | 0.833402 | 5.45E-56 | -1.69E-46 |
| MS.gene055909 | MS.gene30150 | 0.877537 | 5.81E-69 | -1.69E-46 |
| MS.gene055911 | MS.gene30150 | 0.881011 | 3.42E-70 | -1.69E-46 |
| MS.gene05601 | MS.gene30150 | 0.843128 | 1.69E-58 | -1.69E-46 |
| MS.gene056040 | MS.gene30150 | 0.808114 | 3.63E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene30150 | 0.867252 | 1.57E-65 | -1.69E-46 |
| MS.gene056346 | MS.gene30150 | 0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene30150 | 0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene30150 | 0.875731 | 2.44E-68 | -1.69E-46 |
| MS.gene056448 | MS.gene30150 | 0.801947 | 7.08E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene30150 | 0.819781 | 9.70E-53 | -1.69E-46 |
| MS.gene05664 | MS.gene30150 | 0.803203 | 3.90E-49 | -1.69E-46 |
| MS.gene05666 | MS.gene30150 | 0.806498 | 7.99E-50 | -1.69E-46 |
| MS.gene056878 | MS.gene30150 | 0.80733 | 5.33E-50 | -1.69E-46 |
| MS.gene057019 | MS.gene30150 | 0.829069 | 6.32E-55 | -1.69E-46 |
| MS.gene057076 | MS.gene30150 | 0.806955 | 6.40E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene30150 | 0.867905 | 9.69E-66 | -1.69E-46 |
| MS.gene057734 | MS.gene30150 | 0.834649 | 2.65E-56 | -1.69E-46 |
| MS.gene057876 | MS.gene30150 | 0.824712 | 6.96E-54 | -1.69E-46 |
| MS.gene05787 | MS.gene30150 | 0.804956 | 1.68E-49 | -1.69E-46 |
| MS.gene058075 | MS.gene30150 | 0.823952 | 1.05E-53 | -1.69E-46 |
| MS.gene058120 | MS.gene30150 | 0.8433 | 1.53E-58 | -1.69E-46 |
| MS.gene058420 | MS.gene30150 | 0.80638 | 8.46E-50 | -1.69E-46 |
| MS.gene058459 | MS.gene30150 | 0.813223 | 2.85E-51 | -1.69E-46 |
| MS.gene058948 | MS.gene30150 | 0.809599 | 1.75E-50 | -1.69E-46 |
| MS.gene059037 | MS.gene30150 | -0.822435 | 2.37E-53 | -1.69E-46 |
| MS.gene059129 | MS.gene30150 | 0.803897 | 2.80E-49 | -1.69E-46 |
| MS.gene059305 | MS.gene30150 | 0.825525 | 4.47E-54 | -1.69E-46 |
| MS.gene059367 | MS.gene30150 | 0.864809 | 9.31E-65 | -1.69E-46 |
| MS.gene059368 | MS.gene30150 | 0.87877 | 2.15E-69 | -1.69E-46 |
| MS.gene059455 | MS.gene30150 | 0.807128 | 5.88E-50 | -1.69E-46 |
| MS.gene059517 | MS.gene30150 | 0.8386 | 2.61E-57 | -1.69E-46 |
| MS.gene059674 | MS.gene30150 | 0.852147 | 5.59E-61 | -1.69E-46 |
| MS.gene059680 | MS.gene30150 | 0.851944 | 6.38E-61 | -1.69E-46 |
| MS.gene059711 | MS.gene30150 | 0.848362 | 6.43E-60 | -1.69E-46 |
| MS.gene059807 | MS.gene30150 | 0.83299 | 6.90E-56 | -1.69E-46 |
| MS.gene060372 | MS.gene30150 | 0.875273 | 3.51E-68 | -1.69E-46 |
| MS.gene060482 | MS.gene30150 | 0.837207 | 5.96E-57 | -1.69E-46 |
| MS.gene060778 | MS.gene30150 | 0.835899 | 1.28E-56 | -1.69E-46 |
| MS.gene060835 | MS.gene30150 | 0.810738 | 9.93E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene30150 | 0.846134 | 2.63E-59 | -1.69E-46 |
| MS.gene06097 | MS.gene30150 | 0.852876 | 3.46E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82707 | MS.gene30150 | PPI |
| MS.gene027119 | MS.gene30150 | PPI |
| MS.gene94356 | MS.gene30150 | PPI |
| MS.gene30149 | MS.gene30150 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30150.t1 | MTR_3g051220 | 88.103 | 311 | 26 | 1 | 1 | 300 | 1 | 311 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30150.t1 | AT4G27030 | 63.910 | 266 | 86 | 1 | 32 | 297 | 65 | 320 | 5.03e-133 | 380 |
| MS.gene30150.t1 | AT2G22890 | 60.456 | 263 | 93 | 2 | 27 | 288 | 27 | 279 | 6.96e-120 | 345 |
| MS.gene30150.t1 | AT1G62190 | 56.250 | 272 | 108 | 3 | 26 | 294 | 25 | 288 | 9.56e-117 | 338 |
Find 95 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCGATTGAACCCTTTA+TGG | 0.119106 | 3.3:+42612217 | None:intergenic |
| CATTGGGCCATTGATAATTA+TGG | 0.132929 | 3.3:-42612122 | MS.gene30150:CDS |
| TTTGGCGGTCGTGCAAATTT+TGG | 0.198086 | 3.3:+42612359 | None:intergenic |
| CCAACAAAACTTTGAACTAT+AGG | 0.289716 | 3.3:+42611939 | None:intergenic |
| GGTTACATCTTAGCTGATCT+TGG | 0.300492 | 3.3:-42612158 | MS.gene30150:CDS |
| ATGATCAATTGATTAGCATT+AGG | 0.329200 | 3.3:+42612386 | None:intergenic |
| AATGGACAATGACCCTAGTT+TGG | 0.362427 | 3.3:-42612309 | MS.gene30150:CDS |
| ATGCAATAACTATTGTTATA+CGG | 0.371655 | 3.3:+42611771 | None:intergenic |
| ATTGGGCCATTGATAATTAT+GGG | 0.394460 | 3.3:-42612121 | MS.gene30150:CDS |
| TGGCAGTGGTGACGCGAATT+CGG | 0.395859 | 3.3:+42612420 | None:intergenic |
| GTTACATCTTAGCTGATCTT+GGG | 0.396076 | 3.3:-42612157 | MS.gene30150:CDS |
| GCCTTGGGAAGCTTCAAGTT+GGG | 0.400666 | 3.3:+42612073 | None:intergenic |
| CAATTTCATGCATGGGCTCA+TGG | 0.404441 | 3.3:-42611885 | MS.gene30150:CDS |
| CACAACTTTGCTCATTTCGT+TGG | 0.407343 | 3.3:-42612246 | MS.gene30150:CDS |
| ATTGCATAGTAAGTGGAGTA+TGG | 0.413124 | 3.3:-42611755 | MS.gene30150:CDS |
| CAACAAAACTTTGAACTATA+GGG | 0.415894 | 3.3:+42611940 | None:intergenic |
| CGTGTGTCACGATCGCATCA+TGG | 0.419932 | 3.3:-42611810 | MS.gene30150:CDS |
| CGCATCATGGGGCGCACCAC+CGG | 0.423630 | 3.3:-42611797 | MS.gene30150:CDS |
| TGGTAGCTCTGCAAGACAGC+GGG | 0.430058 | 3.3:-42611836 | MS.gene30150:CDS |
| CCCATTGTGGCAGGTTGGAT+TGG | 0.430909 | 3.3:-42612179 | MS.gene30150:CDS |
| TTAAACTTGGGGTTAGGCCT+AGG | 0.435493 | 3.3:-42611677 | MS.gene30150:CDS |
| ATGGCCACTTATGATGGCCT+TGG | 0.435764 | 3.3:+42612057 | None:intergenic |
| TTGGGTCCGGAGTTTACCAT+TGG | 0.438101 | 3.3:-42612139 | MS.gene30150:CDS |
| TTGGGGTTAGGCCTAGGTCT+TGG | 0.441483 | 3.3:-42611671 | MS.gene30150:CDS |
| ATCTTAGCTGATCTTGGGTC+CGG | 0.450717 | 3.3:-42612152 | MS.gene30150:CDS |
| TCGTTGGGAGAGTCCATAAA+GGG | 0.462343 | 3.3:-42612230 | MS.gene30150:CDS |
| GTGTGTCACGATCGCATCAT+GGG | 0.466355 | 3.3:-42611809 | MS.gene30150:CDS |
| AAAGAAGGGGTCATTAGTCT+TGG | 0.476005 | 3.3:+42611598 | None:intergenic |
| CCAATCCAACCTGCCACAAT+GGG | 0.477372 | 3.3:+42612179 | None:intergenic |
| ACCTTCTTCTGAGTGGATTG+AGG | 0.479487 | 3.3:-42611643 | MS.gene30150:CDS |
| CAATTGATTAGCATTAGGAT+TGG | 0.479676 | 3.3:+42612391 | None:intergenic |
| GGCCTTGGGAAGCTTCAAGT+TGG | 0.480026 | 3.3:+42612072 | None:intergenic |
| AATAGTTATTGCATAGTAAG+TGG | 0.480814 | 3.3:-42611762 | MS.gene30150:CDS |
| ACAACTTTGCTCATTTCGTT+GGG | 0.485371 | 3.3:-42612245 | MS.gene30150:CDS |
| TGGCCACTTATGATGGCCTT+GGG | 0.487061 | 3.3:+42612058 | None:intergenic |
| TGGGTTGAGCCCATTGTGGC+AGG | 0.488273 | 3.3:-42612188 | MS.gene30150:CDS |
| TGCGAGTGCATGTAAATTGT+TGG | 0.488737 | 3.3:+42612010 | None:intergenic |
| TCCTCAATCCACTCAGAAGA+AGG | 0.492175 | 3.3:+42611642 | None:intergenic |
| TTCGTTGGGAGAGTCCATAA+AGG | 0.498822 | 3.3:-42612231 | MS.gene30150:CDS |
| AACCGATGCTAATCGTCAAA+TGG | 0.499165 | 3.3:-42612327 | MS.gene30150:CDS |
| TAGCCAACAATTTCATGCAT+GGG | 0.501565 | 3.3:-42611892 | MS.gene30150:CDS |
| TGGTCCATGGCCACTTATGA+TGG | 0.503500 | 3.3:+42612051 | None:intergenic |
| GGCAAATTGACGCTTAGTAA+TGG | 0.504859 | 3.3:+42612031 | None:intergenic |
| TGGTATTCTTTGTGCAAACT+TGG | 0.509254 | 3.3:+42612450 | None:intergenic |
| GACCACGTTGATTCCAAACT+AGG | 0.509624 | 3.3:+42612296 | None:intergenic |
| AGGATTGGACTTCGTGGCAG+TGG | 0.509625 | 3.3:+42612406 | None:intergenic |
| GCAAACTTGGTGGTGAAAGT+TGG | 0.510653 | 3.3:+42612463 | None:intergenic |
| GAGGACACTTGTGTTGGACT+AGG | 0.511483 | 3.3:+42612486 | None:intergenic |
| GAGCCCATGCATGAAATTGT+TGG | 0.514086 | 3.3:+42611889 | None:intergenic |
| GACGAGTCAACACCGTTAGT+TGG | 0.515185 | 3.3:-42612098 | MS.gene30150:CDS |
| AACTATTGTTATACGGTGGC+CGG | 0.517622 | 3.3:+42611778 | None:intergenic |
| CAAACTTGGTGGTGAAAGTT+GGG | 0.517699 | 3.3:+42612464 | None:intergenic |
| GTTCAATCGATATGAATATG+TGG | 0.517900 | 3.3:-42612208 | MS.gene30150:CDS |
| CAACGTGGTCTCATCGAGCA+TGG | 0.522244 | 3.3:-42612283 | MS.gene30150:CDS |
| TGGGTCCGGAGTTTACCATT+GGG | 0.524693 | 3.3:-42612138 | MS.gene30150:CDS |
| TTTACATGCACTCGCACGTA+TGG | 0.528331 | 3.3:-42612003 | MS.gene30150:CDS |
| CTCGTCCCCATAATTATCAA+TGG | 0.530151 | 3.3:+42612115 | None:intergenic |
| AATTTCATGCATGGGCTCAT+GGG | 0.536888 | 3.3:-42611884 | MS.gene30150:CDS |
| CTTCCCAAGGCCATCATAAG+TGG | 0.538180 | 3.3:-42612061 | MS.gene30150:CDS |
| ACCAATCCAACCTGCCACAA+TGG | 0.538608 | 3.3:+42612178 | None:intergenic |
| CATCGAGCATGGGTGACTGT+TGG | 0.540243 | 3.3:-42612272 | MS.gene30150:CDS |
| CATAATTATCAATGGCCCAA+TGG | 0.547046 | 3.3:+42612123 | None:intergenic |
| GTCCATTTGACGATTAGCAT+CGG | 0.553045 | 3.3:+42612325 | None:intergenic |
| TTAGCCAACAATTTCATGCA+TGG | 0.554178 | 3.3:-42611893 | MS.gene30150:CDS |
| TTGAGCCCATTGTGGCAGGT+TGG | 0.554181 | 3.3:-42612184 | MS.gene30150:CDS |
| AAGGCCATCATAAGTGGCCA+TGG | 0.554715 | 3.3:-42612055 | MS.gene30150:CDS |
| GACGCGAATTCGGTGAATGA+TGG | 0.565192 | 3.3:+42612430 | None:intergenic |
| TATTCTTTGTGCAAACTTGG+TGG | 0.570018 | 3.3:+42612453 | None:intergenic |
| GGAGTGAACCTTCTTCTGAG+TGG | 0.570192 | 3.3:-42611650 | MS.gene30150:CDS |
| AGGACACTTGTGTTGGACTA+GGG | 0.574119 | 3.3:+42612487 | None:intergenic |
| AACGTGGTCTCATCGAGCAT+GGG | 0.579331 | 3.3:-42612282 | MS.gene30150:CDS |
| AGCATTAGGATTGGACTTCG+TGG | 0.580291 | 3.3:+42612400 | None:intergenic |
| AACTTTGAACTATAGGGTCA+TGG | 0.588676 | 3.3:+42611946 | None:intergenic |
| TGTTGGACTAGGGAAGACAT+TGG | 0.590835 | 3.3:+42612497 | None:intergenic |
| TTCAATCGATATGAATATGT+GGG | 0.594861 | 3.3:-42612207 | MS.gene30150:CDS |
| TGCAGAGCTACCACGAGAGG+CGG | 0.597322 | 3.3:+42611846 | None:intergenic |
| GGGCTCATGGGACAAAGAGT+AGG | 0.597966 | 3.3:-42611872 | MS.gene30150:CDS |
| TCAAGTTGGGCTCCAACTAA+CGG | 0.602185 | 3.3:+42612086 | None:intergenic |
| ACCACGTTGATTCCAAACTA+GGG | 0.607339 | 3.3:+42612297 | None:intergenic |
| GAGTAGGCTTCCGCCTCTCG+TGG | 0.608568 | 3.3:-42611856 | MS.gene30150:CDS |
| TGACGCTTAGTAATGGTCCA+TGG | 0.614082 | 3.3:+42612038 | None:intergenic |
| TCTTGCAGAGCTACCACGAG+AGG | 0.620494 | 3.3:+42611843 | None:intergenic |
| GAAGGTTCACTCCAAGACCT+AGG | 0.625361 | 3.3:+42611660 | None:intergenic |
| AGTTGGGAGGACACTTGTGT+TGG | 0.625464 | 3.3:+42612480 | None:intergenic |
| TTGGGCCATTGATAATTATG+GGG | 0.630571 | 3.3:-42612120 | MS.gene30150:CDS |
| GCCCAACTTGAAGCTTCCCA+AGG | 0.631486 | 3.3:-42612074 | MS.gene30150:CDS |
| GTGGTAGCTCTGCAAGACAG+CGG | 0.633692 | 3.3:-42611837 | MS.gene30150:CDS |
| TGTGTCACGATCGCATCATG+GGG | 0.649435 | 3.3:-42611808 | MS.gene30150:CDS |
| TATTGTTATACGGTGGCCGG+TGG | 0.652986 | 3.3:+42611781 | None:intergenic |
| AATGGCCCAATGGTAAACTC+CGG | 0.657151 | 3.3:+42612133 | None:intergenic |
| GGTAGCTCTGCAAGACAGCG+GGG | 0.678989 | 3.3:-42611835 | MS.gene30150:CDS |
| CAATAACTATTGTTATACGG+TGG | 0.696113 | 3.3:+42611774 | None:intergenic |
| ACTTGGTGGTGAAAGTTGGG+AGG | 0.704470 | 3.3:+42612467 | None:intergenic |
| TATGTGGGTTGAGCCCATTG+TGG | 0.762634 | 3.3:-42612192 | MS.gene30150:CDS |
| ACCCTAGTTTGGAATCAACG+TGG | 0.767828 | 3.3:-42612298 | MS.gene30150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATATTGTATTTTAAACT+TGG | - | chr3.3:42612415-42612434 | MS.gene30150:CDS | 15.0% |
| !!! | TGATATTGTATTTTAAACTT+GGG | - | chr3.3:42612416-42612435 | MS.gene30150:CDS | 15.0% |
| !! | ATGCAATAACTATTGTTATA+CGG | + | chr3.3:42612337-42612356 | None:intergenic | 20.0% |
| !!! | GATATTGTATTTTAAACTTG+GGG | - | chr3.3:42612417-42612436 | MS.gene30150:CDS | 20.0% |
| ! | AATAGTTATTGCATAGTAAG+TGG | - | chr3.3:42612343-42612362 | MS.gene30150:CDS | 25.0% |
| ! | ATGATCAATTGATTAGCATT+AGG | + | chr3.3:42611722-42611741 | None:intergenic | 25.0% |
| ! | CAACAAAACTTTGAACTATA+GGG | + | chr3.3:42612168-42612187 | None:intergenic | 25.0% |
| ! | TCATGGAAAAAAATATCGAT+AGG | + | chr3.3:42612145-42612164 | None:intergenic | 25.0% |
| ! | TTCAATCGATATGAATATGT+GGG | - | chr3.3:42611898-42611917 | MS.gene30150:CDS | 25.0% |
| !!! | AAGTAATGCTTTTGAAGTTA+TGG | - | chr3.3:42612390-42612409 | MS.gene30150:CDS | 25.0% |
| !!! | CTATAGTTCAAAGTTTTGTT+GGG | - | chr3.3:42612167-42612186 | MS.gene30150:CDS | 25.0% |
| !!! | TATAGTTCAAAGTTTTGTTG+GGG | - | chr3.3:42612168-42612187 | MS.gene30150:CDS | 25.0% |
| CAATAACTATTGTTATACGG+TGG | + | chr3.3:42612334-42612353 | None:intergenic | 30.0% | |
| CAATTGATTAGCATTAGGAT+TGG | + | chr3.3:42611717-42611736 | None:intergenic | 30.0% | |
| CCAACAAAACTTTGAACTAT+AGG | + | chr3.3:42612169-42612188 | None:intergenic | 30.0% | |
| GTTCAATCGATATGAATATG+TGG | - | chr3.3:42611897-42611916 | MS.gene30150:CDS | 30.0% | |
| ! | ATTGGGCCATTGATAATTAT+GGG | - | chr3.3:42611984-42612003 | MS.gene30150:CDS | 30.0% |
| !! | CCTATAGTTCAAAGTTTTGT+TGG | - | chr3.3:42612166-42612185 | MS.gene30150:CDS | 30.0% |
| !! | TGTATTTTAAACTTGGGGTT+AGG | - | chr3.3:42612422-42612441 | MS.gene30150:CDS | 30.0% |
| AACTTTGAACTATAGGGTCA+TGG | + | chr3.3:42612162-42612181 | None:intergenic | 35.0% | |
| ACAACTTTGCTCATTTCGTT+GGG | - | chr3.3:42611860-42611879 | MS.gene30150:CDS | 35.0% | |
| ATTGCATAGTAAGTGGAGTA+TGG | - | chr3.3:42612350-42612369 | MS.gene30150:CDS | 35.0% | |
| CATAATTATCAATGGCCCAA+TGG | + | chr3.3:42611985-42612004 | None:intergenic | 35.0% | |
| GTTACATCTTAGCTGATCTT+GGG | - | chr3.3:42611948-42611967 | MS.gene30150:CDS | 35.0% | |
| TAGCCAACAATTTCATGCAT+GGG | - | chr3.3:42612213-42612232 | MS.gene30150:CDS | 35.0% | |
| TATTCTTTGTGCAAACTTGG+TGG | + | chr3.3:42611655-42611674 | None:intergenic | 35.0% | |
| TGGTATTCTTTGTGCAAACT+TGG | + | chr3.3:42611658-42611677 | None:intergenic | 35.0% | |
| TTAGCCAACAATTTCATGCA+TGG | - | chr3.3:42612212-42612231 | MS.gene30150:CDS | 35.0% | |
| ! | CATATCGATTGAACCCTTTA+TGG | + | chr3.3:42611891-42611910 | None:intergenic | 35.0% |
| ! | CATTGGGCCATTGATAATTA+TGG | - | chr3.3:42611983-42612002 | MS.gene30150:CDS | 35.0% |
| ! | TGGAGTATGGAATGAGTTTT+TGG | - | chr3.3:42612363-42612382 | MS.gene30150:CDS | 35.0% |
| ! | TTGGGCCATTGATAATTATG+GGG | - | chr3.3:42611985-42612004 | MS.gene30150:CDS | 35.0% |
| AACCGATGCTAATCGTCAAA+TGG | - | chr3.3:42611778-42611797 | MS.gene30150:CDS | 40.0% | |
| AACTATTGTTATACGGTGGC+CGG | + | chr3.3:42612330-42612349 | None:intergenic | 40.0% | |
| AATGGACAATGACCCTAGTT+TGG | - | chr3.3:42611796-42611815 | MS.gene30150:CDS | 40.0% | |
| AATTTCATGCATGGGCTCAT+GGG | - | chr3.3:42612221-42612240 | MS.gene30150:CDS | 40.0% | |
| CACAACTTTGCTCATTTCGT+TGG | - | chr3.3:42611859-42611878 | MS.gene30150:CDS | 40.0% | |
| CTCGTCCCCATAATTATCAA+TGG | + | chr3.3:42611993-42612012 | None:intergenic | 40.0% | |
| GGCAAATTGACGCTTAGTAA+TGG | + | chr3.3:42612077-42612096 | None:intergenic | 40.0% | |
| GGTTACATCTTAGCTGATCT+TGG | - | chr3.3:42611947-42611966 | MS.gene30150:CDS | 40.0% | |
| GTCCATTTGACGATTAGCAT+CGG | + | chr3.3:42611783-42611802 | None:intergenic | 40.0% | |
| TGCGAGTGCATGTAAATTGT+TGG | + | chr3.3:42612098-42612117 | None:intergenic | 40.0% | |
| !! | ACCACGTTGATTCCAAACTA+GGG | + | chr3.3:42611811-42611830 | None:intergenic | 40.0% |
| !! | CAAACTTGGTGGTGAAAGTT+GGG | + | chr3.3:42611644-42611663 | None:intergenic | 40.0% |
| !!! | GCATCGGTTACCACTTTTTT+TGG | + | chr3.3:42611767-42611786 | None:intergenic | 40.0% |
| !!! | TCGGTTACCACTTTTTTTGG+CGG | + | chr3.3:42611764-42611783 | None:intergenic | 40.0% |
| AATGGCCCAATGGTAAACTC+CGG | + | chr3.3:42611975-42611994 | None:intergenic | 45.0% | |
| AGCATTAGGATTGGACTTCG+TGG | + | chr3.3:42611708-42611727 | None:intergenic | 45.0% | |
| AGGACACTTGTGTTGGACTA+GGG | + | chr3.3:42611621-42611640 | None:intergenic | 45.0% | |
| ATCTTAGCTGATCTTGGGTC+CGG | - | chr3.3:42611953-42611972 | MS.gene30150:CDS | 45.0% | |
| CAATTTCATGCATGGGCTCA+TGG | - | chr3.3:42612220-42612239 | MS.gene30150:CDS | 45.0% | |
| GAGCCCATGCATGAAATTGT+TGG | + | chr3.3:42612219-42612238 | None:intergenic | 45.0% | |
| TCCTCAATCCACTCAGAAGA+AGG | + | chr3.3:42612466-42612485 | None:intergenic | 45.0% | |
| TCGTTGGGAGAGTCCATAAA+GGG | - | chr3.3:42611875-42611894 | MS.gene30150:CDS | 45.0% | |
| TGACGCTTAGTAATGGTCCA+TGG | + | chr3.3:42612070-42612089 | None:intergenic | 45.0% | |
| TTAAACTTGGGGTTAGGCCT+AGG | - | chr3.3:42612428-42612447 | MS.gene30150:CDS | 45.0% | |
| TTCGTTGGGAGAGTCCATAA+AGG | - | chr3.3:42611874-42611893 | MS.gene30150:CDS | 45.0% | |
| TTTACATGCACTCGCACGTA+TGG | - | chr3.3:42612102-42612121 | MS.gene30150:CDS | 45.0% | |
| ! | ACCCTAGTTTGGAATCAACG+TGG | - | chr3.3:42611807-42611826 | MS.gene30150:CDS | 45.0% |
| ! | TTTGGCGGTCGTGCAAATTT+TGG | + | chr3.3:42611749-42611768 | None:intergenic | 45.0% |
| !! | ACCTTCTTCTGAGTGGATTG+AGG | - | chr3.3:42612462-42612481 | MS.gene30150:CDS | 45.0% |
| !! | GACCACGTTGATTCCAAACT+AGG | + | chr3.3:42611812-42611831 | None:intergenic | 45.0% |
| !! | GCAAACTTGGTGGTGAAAGT+TGG | + | chr3.3:42611645-42611664 | None:intergenic | 45.0% |
| !! | TCAAGTTGGGCTCCAACTAA+CGG | + | chr3.3:42612022-42612041 | None:intergenic | 45.0% |
| AACGTGGTCTCATCGAGCAT+GGG | - | chr3.3:42611823-42611842 | MS.gene30150:CDS | 50.0% | |
| AAGGCCATCATAAGTGGCCA+TGG | - | chr3.3:42612050-42612069 | MS.gene30150:CDS | 50.0% | |
| ACCAATCCAACCTGCCACAA+TGG | + | chr3.3:42611930-42611949 | None:intergenic | 50.0% | |
| AGTTGGGAGGACACTTGTGT+TGG | + | chr3.3:42611628-42611647 | None:intergenic | 50.0% | |
| ATGGCCACTTATGATGGCCT+TGG | + | chr3.3:42612051-42612070 | None:intergenic | 50.0% | |
| CCAATCCAACCTGCCACAAT+GGG | + | chr3.3:42611929-42611948 | None:intergenic | 50.0% | |
| CTTCCCAAGGCCATCATAAG+TGG | - | chr3.3:42612044-42612063 | MS.gene30150:CDS | 50.0% | |
| GAAGGTTCACTCCAAGACCT+AGG | + | chr3.3:42612448-42612467 | None:intergenic | 50.0% | |
| GACGAGTCAACACCGTTAGT+TGG | - | chr3.3:42612007-42612026 | MS.gene30150:CDS | 50.0% | |
| GAGGACACTTGTGTTGGACT+AGG | + | chr3.3:42611622-42611641 | None:intergenic | 50.0% | |
| GGAGTGAACCTTCTTCTGAG+TGG | - | chr3.3:42612455-42612474 | MS.gene30150:CDS | 50.0% | |
| GTGTGTCACGATCGCATCAT+GGG | - | chr3.3:42612296-42612315 | MS.gene30150:CDS | 50.0% | |
| TATTGTTATACGGTGGCCGG+TGG | + | chr3.3:42612327-42612346 | None:intergenic | 50.0% | |
| TGCACGACCGCCAAAAAAAG+TGG | - | chr3.3:42611754-42611773 | MS.gene30150:CDS | 50.0% | |
| TGGCCACTTATGATGGCCTT+GGG | + | chr3.3:42612050-42612069 | None:intergenic | 50.0% | |
| TGGGTCCGGAGTTTACCATT+GGG | - | chr3.3:42611967-42611986 | MS.gene30150:CDS | 50.0% | |
| TGGTCCATGGCCACTTATGA+TGG | + | chr3.3:42612057-42612076 | None:intergenic | 50.0% | |
| TGTGTCACGATCGCATCATG+GGG | - | chr3.3:42612297-42612316 | MS.gene30150:CDS | 50.0% | |
| TTGGGTCCGGAGTTTACCAT+TGG | - | chr3.3:42611966-42611985 | MS.gene30150:CDS | 50.0% | |
| ! | GACGCGAATTCGGTGAATGA+TGG | + | chr3.3:42611678-42611697 | None:intergenic | 50.0% |
| ! | GCCTTGGGAAGCTTCAAGTT+GGG | + | chr3.3:42612035-42612054 | None:intergenic | 50.0% |
| ! | TATGTGGGTTGAGCCCATTG+TGG | - | chr3.3:42611913-42611932 | MS.gene30150:CDS | 50.0% |
| !! | ACTTGGTGGTGAAAGTTGGG+AGG | + | chr3.3:42611641-42611660 | None:intergenic | 50.0% |
| AGGATTGGACTTCGTGGCAG+TGG | + | chr3.3:42611702-42611721 | None:intergenic | 55.0% | |
| CAACGTGGTCTCATCGAGCA+TGG | - | chr3.3:42611822-42611841 | MS.gene30150:CDS | 55.0% | |
| CATCGAGCATGGGTGACTGT+TGG | - | chr3.3:42611833-42611852 | MS.gene30150:CDS | 55.0% | |
| CGTGTGTCACGATCGCATCA+TGG | - | chr3.3:42612295-42612314 | MS.gene30150:CDS | 55.0% | |
| GCCCAACTTGAAGCTTCCCA+AGG | - | chr3.3:42612031-42612050 | MS.gene30150:CDS | 55.0% | |
| GGCCTTGGGAAGCTTCAAGT+TGG | + | chr3.3:42612036-42612055 | None:intergenic | 55.0% | |
| GGGCTCATGGGACAAAGAGT+AGG | - | chr3.3:42612233-42612252 | MS.gene30150:CDS | 55.0% | |
| TCTTGCAGAGCTACCACGAG+AGG | + | chr3.3:42612265-42612284 | None:intergenic | 55.0% | |
| TTGAGCCCATTGTGGCAGGT+TGG | - | chr3.3:42611921-42611940 | MS.gene30150:CDS | 55.0% | |
| TTGGGGTTAGGCCTAGGTCT+TGG | - | chr3.3:42612434-42612453 | MS.gene30150:CDS | 55.0% | |
| ! | CCCATTGTGGCAGGTTGGAT+TGG | - | chr3.3:42611926-42611945 | MS.gene30150:CDS | 55.0% |
| ! | GTGGTAGCTCTGCAAGACAG+CGG | - | chr3.3:42612268-42612287 | MS.gene30150:CDS | 55.0% |
| ! | TGGCAGTGGTGACGCGAATT+CGG | + | chr3.3:42611688-42611707 | None:intergenic | 55.0% |
| ! | TGGTAGCTCTGCAAGACAGC+GGG | - | chr3.3:42612269-42612288 | MS.gene30150:CDS | 55.0% |
| TGCAGAGCTACCACGAGAGG+CGG | + | chr3.3:42612262-42612281 | None:intergenic | 60.0% | |
| ! | GGTAGCTCTGCAAGACAGCG+GGG | - | chr3.3:42612270-42612289 | MS.gene30150:CDS | 60.0% |
| ! | TGGGTTGAGCCCATTGTGGC+AGG | - | chr3.3:42611917-42611936 | MS.gene30150:CDS | 60.0% |
| GAGTAGGCTTCCGCCTCTCG+TGG | - | chr3.3:42612249-42612268 | MS.gene30150:CDS | 65.0% | |
| CGCATCATGGGGCGCACCAC+CGG | - | chr3.3:42612308-42612327 | MS.gene30150:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 42611611 | 42612516 | 42611611 | ID=MS.gene30150 |
| chr3.3 | mRNA | 42611611 | 42612516 | 42611611 | ID=MS.gene30150.t1;Parent=MS.gene30150 |
| chr3.3 | exon | 42611611 | 42612516 | 42611611 | ID=MS.gene30150.t1.exon1;Parent=MS.gene30150.t1 |
| chr3.3 | CDS | 42611611 | 42612516 | 42611611 | ID=cds.MS.gene30150.t1;Parent=MS.gene30150.t1 |
| Gene Sequence |
| Protein sequence |
