AlfalfaGEDB | MS.gene94356

M. sativa cultivar XinJiangDaYe / MS.gene94356

KEGG: K20417
GO: -
PFAM: PF10520.12

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94356.t1	XP_003600055.1	90.4	311	30	0	1	311	1	311	1.60E-162	582

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94356.t1	Q9SZ42	57.3	302	102	2	26	308	27	320	5.2e-101	369.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94356.t1	G7IXK5	90.4	311	30	0	1	311	1	311	1.2e-162	582.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene94356	0.83511	2.03E-56	-1.69E-46
MS.gene049222	MS.gene94356	0.812124	4.96E-51	-1.69E-46
MS.gene049232	MS.gene94356	0.886935	2.22E-72	-1.69E-46
MS.gene049285	MS.gene94356	0.828185	1.03E-54	-1.69E-46
MS.gene049320	MS.gene94356	0.820153	7.97E-53	-1.69E-46
MS.gene049396	MS.gene94356	0.824208	9.14E-54	-1.69E-46
MS.gene049633	MS.gene94356	0.839849	1.24E-57	-1.69E-46
MS.gene049656	MS.gene94356	0.815766	7.81E-52	-1.69E-46
MS.gene049657	MS.gene94356	0.825776	3.90E-54	-1.69E-46
MS.gene05010	MS.gene94356	0.852335	4.94E-61	-1.69E-46
MS.gene050170	MS.gene94356	0.911923	3.51E-83	-1.69E-46
MS.gene050216	MS.gene94356	0.839233	1.79E-57	-1.69E-46
MS.gene050323	MS.gene94356	0.92996	3.28E-93	-1.69E-46
MS.gene050496	MS.gene94356	0.906149	2.02E-80	-1.69E-46
MS.gene050502	MS.gene94356	0.86029	2.29E-63	-1.69E-46
MS.gene050504	MS.gene94356	0.848867	4.66E-60	-1.69E-46
MS.gene050518	MS.gene94356	0.82053	6.53E-53	-1.69E-46
MS.gene050577	MS.gene94356	0.839753	1.31E-57	-1.69E-46
MS.gene050612	MS.gene94356	0.856499	3.09E-62	-1.69E-46
MS.gene050662	MS.gene94356	0.818931	1.52E-52	-1.69E-46
MS.gene050675	MS.gene94356	0.845324	4.36E-59	-1.69E-46
MS.gene050697	MS.gene94356	0.892078	2.21E-74	-1.69E-46
MS.gene050699	MS.gene94356	0.811085	8.35E-51	-1.69E-46
MS.gene050772	MS.gene94356	0.811682	6.20E-51	-1.69E-46
MS.gene05080	MS.gene94356	0.82937	5.35E-55	-1.69E-46
MS.gene050868	MS.gene94356	0.889206	2.98E-73	-1.69E-46
MS.gene050871	MS.gene94356	0.889458	2.38E-73	-1.69E-46
MS.gene050876	MS.gene94356	0.802259	6.11E-49	-1.69E-46
MS.gene050904	MS.gene94356	0.83924	1.78E-57	-1.69E-46
MS.gene050986	MS.gene94356	0.843897	1.06E-58	-1.69E-46
MS.gene051268	MS.gene94356	0.859096	5.24E-63	-1.69E-46
MS.gene051317	MS.gene94356	0.8401	1.07E-57	-1.69E-46
MS.gene051509	MS.gene94356	0.833701	4.58E-56	-1.69E-46
MS.gene051551	MS.gene94356	0.813859	2.07E-51	-1.69E-46
MS.gene051651	MS.gene94356	-0.814943	1.19E-51	-1.69E-46
MS.gene051874	MS.gene94356	0.833008	6.82E-56	-1.69E-46
MS.gene051941	MS.gene94356	0.820207	7.75E-53	-1.69E-46
MS.gene052066	MS.gene94356	0.883996	2.79E-71	-1.69E-46
MS.gene052164	MS.gene94356	0.835392	1.72E-56	-1.69E-46
MS.gene052482	MS.gene94356	0.845125	4.94E-59	-1.69E-46
MS.gene052486	MS.gene94356	0.84586	3.12E-59	-1.69E-46
MS.gene052503	MS.gene94356	0.820971	5.17E-53	-1.69E-46
MS.gene052504	MS.gene94356	0.83722	5.91E-57	-1.69E-46
MS.gene052506	MS.gene94356	0.847581	1.06E-59	-1.69E-46
MS.gene052822	MS.gene94356	0.853989	1.66E-61	-1.69E-46
MS.gene052823	MS.gene94356	0.823278	1.51E-53	-1.69E-46
MS.gene052825	MS.gene94356	0.816397	5.65E-52	-1.69E-46
MS.gene052966	MS.gene94356	0.85265	4.02E-61	-1.69E-46
MS.gene053203	MS.gene94356	0.848418	6.21E-60	-1.69E-46
MS.gene053479	MS.gene94356	0.832738	7.96E-56	-1.69E-46
MS.gene053480	MS.gene94356	0.80539	1.37E-49	-1.69E-46
MS.gene053505	MS.gene94356	0.80054	1.37E-48	-1.69E-46
MS.gene053574	MS.gene94356	0.831541	1.57E-55	-1.69E-46
MS.gene053626	MS.gene94356	0.841545	4.45E-58	-1.69E-46
MS.gene053633	MS.gene94356	0.866319	3.11E-65	-1.69E-46
MS.gene053824	MS.gene94356	0.854336	1.32E-61	-1.69E-46
MS.gene053916	MS.gene94356	0.807262	5.51E-50	-1.69E-46
MS.gene054003	MS.gene94356	0.817152	3.82E-52	-1.69E-46
MS.gene054595	MS.gene94356	0.840269	9.63E-58	-1.69E-46
MS.gene05470	MS.gene94356	0.829305	5.55E-55	-1.69E-46
MS.gene05494	MS.gene94356	0.812816	3.51E-51	-1.69E-46
MS.gene054954	MS.gene94356	0.865687	4.93E-65	-1.69E-46
MS.gene055224	MS.gene94356	0.80992	1.49E-50	-1.69E-46
MS.gene055251	MS.gene94356	-0.8193	1.25E-52	-1.69E-46
MS.gene055362	MS.gene94356	0.8141	1.83E-51	-1.69E-46
MS.gene055502	MS.gene94356	0.831957	1.24E-55	-1.69E-46
MS.gene055577	MS.gene94356	0.836746	7.81E-57	-1.69E-46
MS.gene055748	MS.gene94356	0.840832	6.86E-58	-1.69E-46
MS.gene055750	MS.gene94356	0.867483	1.32E-65	-1.69E-46
MS.gene055751	MS.gene94356	0.85825	9.37E-63	-1.69E-46
MS.gene055776	MS.gene94356	0.850449	1.69E-60	-1.69E-46
MS.gene05589	MS.gene94356	0.888773	4.39E-73	-1.69E-46
MS.gene055942	MS.gene94356	-0.80243	5.63E-49	-1.69E-46
MS.gene056046	MS.gene94356	0.848665	5.30E-60	-1.69E-46
MS.gene056166	MS.gene94356	0.822279	2.58E-53	-1.69E-46
MS.gene056266	MS.gene94356	0.801897	7.25E-49	-1.69E-46
MS.gene056387	MS.gene94356	0.8696	2.74E-66	-1.69E-46
MS.gene056446	MS.gene94356	0.809496	1.84E-50	-1.69E-46
MS.gene056504	MS.gene94356	0.911107	8.84E-83	-1.69E-46
MS.gene056510	MS.gene94356	0.876044	1.91E-68	-1.69E-46
MS.gene056657	MS.gene94356	0.820346	7.20E-53	-1.69E-46
MS.gene056878	MS.gene94356	0.830881	2.29E-55	-1.69E-46
MS.gene057076	MS.gene94356	0.806145	9.48E-50	-1.69E-46
MS.gene057086	MS.gene94356	0.860131	2.56E-63	-1.69E-46
MS.gene05753	MS.gene94356	0.80522	1.48E-49	-1.69E-46
MS.gene057687	MS.gene94356	0.823223	1.56E-53	-1.69E-46
MS.gene057872	MS.gene94356	0.816763	4.68E-52	-1.69E-46
MS.gene05787	MS.gene94356	0.837512	4.98E-57	-1.69E-46
MS.gene058157	MS.gene94356	0.817875	2.63E-52	-1.69E-46
MS.gene058171	MS.gene94356	-0.836047	1.18E-56	-1.69E-46
MS.gene058173	MS.gene94356	-0.841336	5.06E-58	-1.69E-46
MS.gene058175	MS.gene94356	-0.841434	4.76E-58	-1.69E-46
MS.gene058334	MS.gene94356	-0.834061	3.73E-56	-1.69E-46
MS.gene05837	MS.gene94356	0.831269	1.84E-55	-1.69E-46
MS.gene058382	MS.gene94356	-0.813923	2.00E-51	-1.69E-46
MS.gene058419	MS.gene94356	0.818076	2.37E-52	-1.69E-46
MS.gene058838	MS.gene94356	0.803513	3.36E-49	-1.69E-46
MS.gene059022	MS.gene94356	0.831289	1.82E-55	-1.69E-46
MS.gene059023	MS.gene94356	0.827062	1.92E-54	-1.69E-46
MS.gene059045	MS.gene94356	-0.822861	1.89E-53	-1.69E-46
MS.gene05913	MS.gene94356	0.820783	5.71E-53	-1.69E-46
MS.gene059305	MS.gene94356	0.802415	5.67E-49	-1.69E-46
MS.gene059367	MS.gene94356	0.832578	8.73E-56	-1.69E-46
MS.gene059667	MS.gene94356	0.827532	1.49E-54	-1.69E-46
MS.gene059699	MS.gene94356	-0.818737	1.68E-52	-1.69E-46
MS.gene059701	MS.gene94356	-0.805643	1.21E-49	-1.69E-46
MS.gene059703	MS.gene94356	-0.840752	7.20E-58	-1.69E-46
MS.gene059837	MS.gene94356	0.855352	6.68E-62	-1.69E-46
MS.gene059865	MS.gene94356	0.902906	6.00E-79	-1.69E-46
MS.gene05996	MS.gene94356	0.812317	4.51E-51	-1.69E-46
MS.gene06000	MS.gene94356	0.895867	6.37E-76	-1.69E-46
MS.gene06027	MS.gene94356	0.812418	4.28E-51	-1.69E-46
MS.gene060482	MS.gene94356	0.815438	9.25E-52	-1.69E-46
MS.gene060593	MS.gene94356	-0.819425	1.17E-52	-1.69E-46
MS.gene060595	MS.gene94356	-0.844233	8.58E-59	-1.69E-46
MS.gene060703	MS.gene94356	0.827774	1.30E-54	-1.69E-46
MS.gene060762	MS.gene94356	0.832547	8.88E-56	-1.69E-46
MS.gene060778	MS.gene94356	0.901734	1.99E-78	-1.69E-46
MS.gene06077	MS.gene94356	0.850418	1.72E-60	-1.69E-46
MS.gene06097	MS.gene94356	0.847404	1.18E-59	-1.69E-46
MS.gene060982	MS.gene94356	0.916688	1.32E-85	-1.69E-46
MS.gene061044	MS.gene94356	-0.83451	2.88E-56	-1.69E-46
MS.gene061218	MS.gene94356	0.840301	9.44E-58	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene30149	MS.gene94356	PPI
MS.gene94356	MS.gene82707	PPI
MS.gene94356	MS.gene30149	PPI
MS.gene027119	MS.gene94356	PPI
MS.gene94356	MS.gene30150	PPI
MS.gene94356	MS.gene027119	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94356.t1	MTR_3g051220	96.463	311	11	0	1	311	1	311	0.0	625

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94356.t1	AT4G27030	60.197	304	90	2	26	308	27	320	5.17e-138	394
MS.gene94356.t1	AT1G62190	56.028	282	104	3	26	305	25	288	2.85e-119	345
MS.gene94356.t1	AT2G22890	60.547	256	90	2	45	299	34	279	5.28e-115	333

Find 109 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATATCCATCGAACCTTTAA+TGG	0.128810	3.2:+43705209	None:intergenic
CATTGGGCCATTGATAATTA+TGG	0.152142	3.2:-43705114	MS.gene94356:CDS
GGCCTTGGAAAGCTTCAATT+TGG	0.208933	3.2:+43705064	None:intergenic
TAGCATTGGGATTGGACTTC+AGG	0.263938	3.2:+43705391	None:intergenic
TCGTTGGGAGAGTCCATTAA+AGG	0.296680	3.2:-43705222	MS.gene94356:CDS
GGTTACATCTTAGCTGATCT+TGG	0.300492	3.2:-43705150	MS.gene94356:CDS
CCAACAAAACTTTGAACAAT+AGG	0.307472	3.2:+43704931	None:intergenic
ATGCAATAATTATTGTTATA+CGG	0.313977	3.2:+43704763	None:intergenic
ATTGGCGGTCGTGCAAGTTT+CGG	0.325462	3.2:+43705351	None:intergenic
GCCTTGGAAAGCTTCAATTT+GGG	0.372297	3.2:+43705065	None:intergenic
AATGGACAATGACCCTAGTT+TGG	0.384966	3.2:-43705301	MS.gene94356:CDS
ATGATATTGTATTTCAAACT+TGG	0.395567	3.2:-43704682	MS.gene94356:CDS
GTTACATCTTAGCTGATCTT+GGG	0.396076	3.2:-43705149	MS.gene94356:CDS
CCAATCCAACCTGCCACAAT+AGG	0.396466	3.2:+43705171	None:intergenic
GAAAGAAGGGATCTTAGGTT+TGG	0.398872	3.2:+43704590	None:intergenic
CACAACATTGCTCATTTCGT+TGG	0.401615	3.2:-43705238	MS.gene94356:CDS
CAATTTCATGCATGGGCTCA+TGG	0.404441	3.2:-43704877	MS.gene94356:CDS
CGGAGCAATTGACGCAAATT+CGG	0.404645	3.2:+43705445	None:intergenic
CCTATTGTGGCAGGTTGGAT+TGG	0.412756	3.2:-43705171	MS.gene94356:CDS
CAATTTGGGCACCAACCAAT+GGG	0.415017	3.2:+43705079	None:intergenic
ATGATCAATTGATTAGCATT+GGG	0.424942	3.2:+43705378	None:intergenic
TGTATTTCAAACTTGGGGTC+AGG	0.426129	3.2:-43704675	MS.gene94356:CDS
TGGTAGCTCTGCAAGACAGC+GGG	0.430058	3.2:-43704828	MS.gene94356:CDS
TGATATTGTATTTCAAACTT+GGG	0.432835	3.2:-43704681	MS.gene94356:CDS
CAATTGATTAGCATTGGGAT+TGG	0.436072	3.2:+43705383	None:intergenic
TTGGGTCCGGAGTTTACCAT+TGG	0.438101	3.2:-43705131	MS.gene94356:CDS
AATGATCAATTGATTAGCAT+TGG	0.440879	3.2:+43705377	None:intergenic
TCATGGAAAAGAAGATTGAT+AGG	0.446735	3.2:+43704955	None:intergenic
AATAATTATTGCATAGTAAG+TGG	0.447132	3.2:-43704754	MS.gene94356:CDS
TCAAACTTGGGGTCAGGCCT+AGG	0.448580	3.2:-43704669	MS.gene94356:CDS
ATCTTAGCTGATCTTGGGTC+CGG	0.450717	3.2:-43705144	MS.gene94356:CDS
CAACAAAACTTTGAACAATA+GGG	0.456010	3.2:+43704932	None:intergenic
ACGGCCACTTATGATGGCCT+TGG	0.469320	3.2:+43705049	None:intergenic
GAAAACTTGGTGGTGAAAGC+TGG	0.480653	3.2:+43705488	None:intergenic
CTTGTGTCACGGTCACAACA+TGG	0.482681	3.2:-43704802	MS.gene94356:CDS
TCCTCTATCCACTCAGAAGA+AGG	0.484874	3.2:+43704634	None:intergenic
TTGGCTAAACATAATACAAC+CGG	0.486952	3.2:+43704900	None:intergenic
ACAACATTGCTCATTTCGTT+GGG	0.487853	3.2:-43705237	MS.gene94356:CDS
TGCGAGTGAGTGCAAATTGT+TGG	0.491754	3.2:+43705002	None:intergenic
GACCATGTTGATTCCAAACT+AGG	0.495633	3.2:+43705288	None:intergenic
TAGCCAACAATTTCATGCAT+GGG	0.501565	3.2:-43704884	MS.gene94356:CDS
CACAACATGGGGCACACCAC+CGG	0.502734	3.2:-43704789	MS.gene94356:CDS
TCAATTTGGGCACCAACCAA+TGG	0.503580	3.2:+43705078	None:intergenic
GGCAAATTGACGCTTAGTAA+TGG	0.504859	3.2:+43705023	None:intergenic
AGCATTGGGATTGGACTTCA+GGG	0.505486	3.2:+43705392	None:intergenic
AAGACACTTGTGTTGGACTA+AGG	0.508363	3.2:+43705512	None:intergenic
TTGGACTTCAGGGCAGTGAC+AGG	0.512381	3.2:+43705402	None:intergenic
GAGCCCATGCATGAAATTGT+TGG	0.514086	3.2:+43704881	None:intergenic
TGGTCCACGGCCACTTATGA+TGG	0.515734	3.2:+43705043	None:intergenic
TGGAGCCTATTGTGGCAGGT+TGG	0.518996	3.2:-43705176	MS.gene94356:CDS
TGGAGACGGGTCAACCCCAT+TGG	0.521376	3.2:-43705094	MS.gene94356:CDS
GCCATTGATAATTATGGAGA+CGG	0.521610	3.2:-43705108	MS.gene94356:CDS
CAACATGGTCTCATCGAGCA+TGG	0.522244	3.2:-43705275	MS.gene94356:CDS
TGGGTCCGGAGTTTACCATT+GGG	0.524693	3.2:-43705130	MS.gene94356:CDS
GACAGGAGTATCAGTGGTAG+TGG	0.528030	3.2:+43705419	None:intergenic
CCCGTCTCCATAATTATCAA+TGG	0.530151	3.2:+43705107	None:intergenic
TTGGGGTCAGGCCTAGGTCA+TGG	0.530441	3.2:-43704663	MS.gene94356:CDS
GCCTTCTTCTGAGTGGATAG+AGG	0.532572	3.2:-43704635	MS.gene94356:CDS
AAACTAGGGTCATTGTCCAT+TGG	0.532832	3.2:+43705303	None:intergenic
TTTGCACTCACTCGCACGTA+TGG	0.534993	3.2:-43704995	MS.gene94356:CDS
TGCACGACCGCCAATAAAAG+TGG	0.536589	3.2:-43705343	MS.gene94356:CDS
AATTTCATGCATGGGCTCAT+GGG	0.536888	3.2:-43704876	MS.gene94356:CDS
AATTATTGTTATACGGCGGC+CGG	0.539022	3.2:+43704770	None:intergenic
TAGTGTTCTTTGTGAAAACT+TGG	0.545737	3.2:+43705475	None:intergenic
CATAATTATCAATGGCCCAA+TGG	0.547046	3.2:+43705115	None:intergenic
AGTATCAGTGGTAGTGGTGG+CGG	0.547623	3.2:+43705425	None:intergenic
GTTCGATGGATATGAATATG+TGG	0.552737	3.2:-43705200	MS.gene94356:CDS
AAGGCCATCATAAGTGGCCG+TGG	0.552800	3.2:-43705047	MS.gene94356:CDS
CATCGAGCATGGGTGACAGT+TGG	0.553692	3.2:-43705264	MS.gene94356:CDS
TGGGTGGAGCCTATTGTGGC+AGG	0.553913	3.2:-43705180	MS.gene94356:CDS
TTAGCCAACAATTTCATGCA+TGG	0.554178	3.2:-43704885	MS.gene94356:CDS
GACGGGTCAACCCCATTGGT+TGG	0.555304	3.2:-43705090	MS.gene94356:CDS
TATTGTTATACGGCGGCCGG+TGG	0.555619	3.2:+43704773	None:intergenic
CTTTCCAAGGCCATCATAAG+TGG	0.559970	3.2:-43705053	MS.gene94356:CDS
AGCTGGGAAGACACTTGTGT+TGG	0.564987	3.2:+43705505	None:intergenic
AACTGATGCTAACCGTCCAA+TGG	0.569213	3.2:-43705319	MS.gene94356:CDS
GGCAGTGACAGGAGTATCAG+TGG	0.569436	3.2:+43705413	None:intergenic
GATATTGTATTTCAAACTTG+GGG	0.574716	3.2:-43704680	MS.gene94356:CDS
GCCCAAATTGAAGCTTTCCA+AGG	0.575990	3.2:-43705066	MS.gene94356:CDS
AACATGGTCTCATCGAGCAT+GGG	0.579331	3.2:-43705274	MS.gene94356:CDS
ACAGCGGGGTGCTTGTGTCA+CGG	0.582100	3.2:-43704813	MS.gene94356:CDS
TGTTCTTTGTGAAAACTTGG+TGG	0.585410	3.2:+43705478	None:intergenic
AGAGTCCATTAAAGGTTCGA+TGG	0.586164	3.2:-43705214	MS.gene94356:CDS
AACTTTGAACAATAGGGTCA+TGG	0.591159	3.2:+43704938	None:intergenic
AAAACTTGGTGGTGAAAGCT+GGG	0.597144	3.2:+43705489	None:intergenic
TGCAGAGCTACCACGAGCGG+TGG	0.597300	3.2:+43704838	None:intergenic
ACCATGTTGATTCCAAACTA+GGG	0.597315	3.2:+43705289	None:intergenic
TTGTGTCACGGTCACAACAT+GGG	0.597584	3.2:-43704801	MS.gene94356:CDS
CCATTGATAATTATGGAGAC+GGG	0.597890	3.2:-43705107	MS.gene94356:CDS
GGGCTCATGGGACAAAGAGT+AGG	0.597966	3.2:-43704864	MS.gene94356:CDS
TTCGATGGATATGAATATGT+GGG	0.600883	3.2:-43705199	MS.gene94356:CDS
AGCAATTGACGCAAATTCGG+TGG	0.603113	3.2:+43705448	None:intergenic
GAGTAGGCTTCCACCGCTCG+TGG	0.605399	3.2:-43704848	MS.gene94356:CDS
GAAGGCTCACTCCATGACCT+AGG	0.616374	3.2:+43704652	None:intergenic
TCTTGCAGAGCTACCACGAG+CGG	0.618762	3.2:+43704835	None:intergenic
ATTGCATAGTAAGTGGAGTG+TGG	0.622359	3.2:-43704747	MS.gene94356:CDS
TGTGTCACGGTCACAACATG+GGG	0.623504	3.2:-43704800	MS.gene94356:CDS
AGGAGTATCAGTGGTAGTGG+TGG	0.624962	3.2:+43705422	None:intergenic
TAGGGTCATTGTCCATTGGA+CGG	0.625760	3.2:+43705307	None:intergenic
GTGGTAGCTCTGCAAGACAG+CGG	0.633692	3.2:-43704829	MS.gene94356:CDS
AATGGCCCAATGGTAAACTC+CGG	0.657151	3.2:+43705125	None:intergenic
GGAGTGAGCCTTCTTCTGAG+TGG	0.666960	3.2:-43704642	MS.gene94356:CDS
TGACGCTTAGTAATGGTCCA+CGG	0.667756	3.2:+43705030	None:intergenic
ACCCTAGTTTGGAATCAACA+TGG	0.676174	3.2:-43705290	MS.gene94356:CDS
GGTAGCTCTGCAAGACAGCG+GGG	0.678989	3.2:-43704827	MS.gene94356:CDS
CAATAATTATTGTTATACGG+CGG	0.684485	3.2:+43704766	None:intergenic
TATGTGGGTGGAGCCTATTG+TGG	0.686763	3.2:-43705184	MS.gene94356:CDS
AATTTGGGCACCAACCAATG+GGG	0.702858	3.2:+43705080	None:intergenic
GATGGATATGAATATGTGGG+TGG	0.713715	3.2:-43705196	MS.gene94356:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATGCAATAATTATTGTTATA+CGG	+	chr3.2:43705362-43705381	None:intergenic	15.0%
!!	AATAATTATTGCATAGTAAG+TGG	-	chr3.2:43705368-43705387	MS.gene94356:CDS	20.0%
!!	ATGATATTGTATTTCAAACT+TGG	-	chr3.2:43705440-43705459	MS.gene94356:CDS	20.0%
!!	TGATATTGTATTTCAAACTT+GGG	-	chr3.2:43705441-43705460	MS.gene94356:CDS	20.0%
!	AATGATCAATTGATTAGCAT+TGG	+	chr3.2:43704748-43704767	None:intergenic	25.0%
!	ATGATCAATTGATTAGCATT+GGG	+	chr3.2:43704747-43704766	None:intergenic	25.0%
!	CAACAAAACTTTGAACAATA+GGG	+	chr3.2:43705193-43705212	None:intergenic	25.0%
!	CAATAATTATTGTTATACGG+CGG	+	chr3.2:43705359-43705378	None:intergenic	25.0%
!	GATATTGTATTTCAAACTTG+GGG	-	chr3.2:43705442-43705461	MS.gene94356:CDS	25.0%
!!!	CTATTGTTCAAAGTTTTGTT+GGG	-	chr3.2:43705192-43705211	MS.gene94356:CDS	25.0%
!!!	TATTGTTCAAAGTTTTGTTG+GGG	-	chr3.2:43705193-43705212	MS.gene94356:CDS	25.0%
	CCAACAAAACTTTGAACAAT+AGG	+	chr3.2:43705194-43705213	None:intergenic	30.0%
	TAGTGTTCTTTGTGAAAACT+TGG	+	chr3.2:43704650-43704669	None:intergenic	30.0%
	TCATGGAAAAGAAGATTGAT+AGG	+	chr3.2:43705170-43705189	None:intergenic	30.0%
	TTCGATGGATATGAATATGT+GGG	-	chr3.2:43704923-43704942	MS.gene94356:CDS	30.0%
	TTGGCTAAACATAATACAAC+CGG	+	chr3.2:43705225-43705244	None:intergenic	30.0%
!!	CCTATTGTTCAAAGTTTTGT+TGG	-	chr3.2:43705191-43705210	MS.gene94356:CDS	30.0%
!!!	AACTAAAGCTTTTGAAGCTA+TGG	-	chr3.2:43705415-43705434	MS.gene94356:CDS	30.0%
	AACTTTGAACAATAGGGTCA+TGG	+	chr3.2:43705187-43705206	None:intergenic	35.0%
	ACAACATTGCTCATTTCGTT+GGG	-	chr3.2:43704885-43704904	MS.gene94356:CDS	35.0%
	CATAATTATCAATGGCCCAA+TGG	+	chr3.2:43705010-43705029	None:intergenic	35.0%
	CATATCCATCGAACCTTTAA+TGG	+	chr3.2:43704916-43704935	None:intergenic	35.0%
	GTTACATCTTAGCTGATCTT+GGG	-	chr3.2:43704973-43704992	MS.gene94356:CDS	35.0%
	GTTCGATGGATATGAATATG+TGG	-	chr3.2:43704922-43704941	MS.gene94356:CDS	35.0%
	TAGCCAACAATTTCATGCAT+GGG	-	chr3.2:43705238-43705257	MS.gene94356:CDS	35.0%
	TGTTCTTTGTGAAAACTTGG+TGG	+	chr3.2:43704647-43704666	None:intergenic	35.0%
	TTAGCCAACAATTTCATGCA+TGG	-	chr3.2:43705237-43705256	MS.gene94356:CDS	35.0%
!	CAATTGATTAGCATTGGGAT+TGG	+	chr3.2:43704742-43704761	None:intergenic	35.0%
!	CATTGGGCCATTGATAATTA+TGG	-	chr3.2:43705008-43705027	MS.gene94356:CDS	35.0%
!	CCATTGATAATTATGGAGAC+GGG	-	chr3.2:43705015-43705034	MS.gene94356:CDS	35.0%
!	GCCATTGATAATTATGGAGA+CGG	-	chr3.2:43705014-43705033	MS.gene94356:CDS	35.0%
!!	ACCATGTTGATTCCAAACTA+GGG	+	chr3.2:43704836-43704855	None:intergenic	35.0%
!!	GCATCAGTTACCACTTTTAT+TGG	+	chr3.2:43704792-43704811	None:intergenic	35.0%
!!	TCAGTTACCACTTTTATTGG+CGG	+	chr3.2:43704789-43704808	None:intergenic	35.0%
	AAACTAGGGTCATTGTCCAT+TGG	+	chr3.2:43704822-43704841	None:intergenic	40.0%
	AAGACACTTGTGTTGGACTA+AGG	+	chr3.2:43704613-43704632	None:intergenic	40.0%
	AATGGACAATGACCCTAGTT+TGG	-	chr3.2:43704821-43704840	MS.gene94356:CDS	40.0%
	AATTATTGTTATACGGCGGC+CGG	+	chr3.2:43705355-43705374	None:intergenic	40.0%
	AATTTCATGCATGGGCTCAT+GGG	-	chr3.2:43705246-43705265	MS.gene94356:CDS	40.0%
	AGAGTCCATTAAAGGTTCGA+TGG	-	chr3.2:43704908-43704927	MS.gene94356:CDS	40.0%
	ATTGCATAGTAAGTGGAGTG+TGG	-	chr3.2:43705375-43705394	MS.gene94356:CDS	40.0%
	CACAACATTGCTCATTTCGT+TGG	-	chr3.2:43704884-43704903	MS.gene94356:CDS	40.0%
	CCCGTCTCCATAATTATCAA+TGG	+	chr3.2:43705018-43705037	None:intergenic	40.0%
	GATGGATATGAATATGTGGG+TGG	-	chr3.2:43704926-43704945	MS.gene94356:CDS	40.0%
	GCCTTGGAAAGCTTCAATTT+GGG	+	chr3.2:43705060-43705079	None:intergenic	40.0%
	GGCAAATTGACGCTTAGTAA+TGG	+	chr3.2:43705102-43705121	None:intergenic	40.0%
	GGTTACATCTTAGCTGATCT+TGG	-	chr3.2:43704972-43704991	MS.gene94356:CDS	40.0%
	TGTATTTCAAACTTGGGGTC+AGG	-	chr3.2:43705447-43705466	MS.gene94356:CDS	40.0%
!	ACCCTAGTTTGGAATCAACA+TGG	-	chr3.2:43704832-43704851	MS.gene94356:CDS	40.0%
!	TGGAGTGTGGAATGAGTTTT+TGG	-	chr3.2:43705388-43705407	MS.gene94356:CDS	40.0%
!!	AAAACTTGGTGGTGAAAGCT+GGG	+	chr3.2:43704636-43704655	None:intergenic	40.0%
!!	GACCATGTTGATTCCAAACT+AGG	+	chr3.2:43704837-43704856	None:intergenic	40.0%
	AACATGGTCTCATCGAGCAT+GGG	-	chr3.2:43704848-43704867	MS.gene94356:CDS	45.0%
	AACTGATGCTAACCGTCCAA+TGG	-	chr3.2:43704803-43704822	MS.gene94356:CDS	45.0%
	AATGGCCCAATGGTAAACTC+CGG	+	chr3.2:43705000-43705019	None:intergenic	45.0%
	AATTTGGGCACCAACCAATG+GGG	+	chr3.2:43705045-43705064	None:intergenic	45.0%
	AGCAATTGACGCAAATTCGG+TGG	+	chr3.2:43704677-43704696	None:intergenic	45.0%
	ATCTTAGCTGATCTTGGGTC+CGG	-	chr3.2:43704978-43704997	MS.gene94356:CDS	45.0%
	CAATTTCATGCATGGGCTCA+TGG	-	chr3.2:43705245-43705264	MS.gene94356:CDS	45.0%
	CAATTTGGGCACCAACCAAT+GGG	+	chr3.2:43705046-43705065	None:intergenic	45.0%
	CGGAGCAATTGACGCAAATT+CGG	+	chr3.2:43704680-43704699	None:intergenic	45.0%
	CTTTCCAAGGCCATCATAAG+TGG	-	chr3.2:43705069-43705088	MS.gene94356:CDS	45.0%
	GAGCCCATGCATGAAATTGT+TGG	+	chr3.2:43705244-43705263	None:intergenic	45.0%
	GCCCAAATTGAAGCTTTCCA+AGG	-	chr3.2:43705056-43705075	MS.gene94356:CDS	45.0%
	GGCCTTGGAAAGCTTCAATT+TGG	+	chr3.2:43705061-43705080	None:intergenic	45.0%
	TAGGGTCATTGTCCATTGGA+CGG	+	chr3.2:43704818-43704837	None:intergenic	45.0%
	TCAATTTGGGCACCAACCAA+TGG	+	chr3.2:43705047-43705066	None:intergenic	45.0%
	TCCTCTATCCACTCAGAAGA+AGG	+	chr3.2:43705491-43705510	None:intergenic	45.0%
	TCGTTGGGAGAGTCCATTAA+AGG	-	chr3.2:43704900-43704919	MS.gene94356:CDS	45.0%
	TGACGCTTAGTAATGGTCCA+CGG	+	chr3.2:43705095-43705114	None:intergenic	45.0%
	TGCGAGTGAGTGCAAATTGT+TGG	+	chr3.2:43705123-43705142	None:intergenic	45.0%
	TTGTGTCACGGTCACAACAT+GGG	-	chr3.2:43705321-43705340	MS.gene94356:CDS	45.0%
!	AGCATTGGGATTGGACTTCA+GGG	+	chr3.2:43704733-43704752	None:intergenic	45.0%
!	TAGCATTGGGATTGGACTTC+AGG	+	chr3.2:43704734-43704753	None:intergenic	45.0%
!!	GAAAACTTGGTGGTGAAAGC+TGG	+	chr3.2:43704637-43704656	None:intergenic	45.0%
	AGCTGGGAAGACACTTGTGT+TGG	+	chr3.2:43704620-43704639	None:intergenic	50.0%
	ATTGGCGGTCGTGCAAGTTT+CGG	+	chr3.2:43704774-43704793	None:intergenic	50.0%
	CAACATGGTCTCATCGAGCA+TGG	-	chr3.2:43704847-43704866	MS.gene94356:CDS	50.0%
	CCAATCCAACCTGCCACAAT+AGG	+	chr3.2:43704954-43704973	None:intergenic	50.0%
	CTTGTGTCACGGTCACAACA+TGG	-	chr3.2:43705320-43705339	MS.gene94356:CDS	50.0%
	GCCTTCTTCTGAGTGGATAG+AGG	-	chr3.2:43705487-43705506	MS.gene94356:CDS	50.0%
	TATGTGGGTGGAGCCTATTG+TGG	-	chr3.2:43704938-43704957	MS.gene94356:CDS	50.0%
	TGCACGACCGCCAATAAAAG+TGG	-	chr3.2:43704779-43704798	MS.gene94356:CDS	50.0%
	TGGGTCCGGAGTTTACCATT+GGG	-	chr3.2:43704992-43705011	MS.gene94356:CDS	50.0%
	TGTGTCACGGTCACAACATG+GGG	-	chr3.2:43705322-43705341	MS.gene94356:CDS	50.0%
	TTGGGTCCGGAGTTTACCAT+TGG	-	chr3.2:43704991-43705010	MS.gene94356:CDS	50.0%
	TTTGCACTCACTCGCACGTA+TGG	-	chr3.2:43705127-43705146	MS.gene94356:CDS	50.0%
!	CCTATTGTGGCAGGTTGGAT+TGG	-	chr3.2:43704951-43704970	MS.gene94356:CDS	50.0%
!!	AGGAGTATCAGTGGTAGTGG+TGG	+	chr3.2:43704703-43704722	None:intergenic	50.0%
!!	AGTATCAGTGGTAGTGGTGG+CGG	+	chr3.2:43704700-43704719	None:intergenic	50.0%
!!	GACAGGAGTATCAGTGGTAG+TGG	+	chr3.2:43704706-43704725	None:intergenic	50.0%
!!!	AGTTTTGTTGGGGTGTGTGC+CGG	-	chr3.2:43705203-43705222	MS.gene94356:CDS	50.0%
	AAGGCCATCATAAGTGGCCG+TGG	-	chr3.2:43705075-43705094	MS.gene94356:CDS	55.0%
	ACGGCCACTTATGATGGCCT+TGG	+	chr3.2:43705076-43705095	None:intergenic	55.0%
	CATCGAGCATGGGTGACAGT+TGG	-	chr3.2:43704858-43704877	MS.gene94356:CDS	55.0%
	GAAGGCTCACTCCATGACCT+AGG	+	chr3.2:43705473-43705492	None:intergenic	55.0%
	GGAGTGAGCCTTCTTCTGAG+TGG	-	chr3.2:43705480-43705499	MS.gene94356:CDS	55.0%
	GGGCTCATGGGACAAAGAGT+AGG	-	chr3.2:43705258-43705277	MS.gene94356:CDS	55.0%
	TATTGTTATACGGCGGCCGG+TGG	+	chr3.2:43705352-43705371	None:intergenic	55.0%
	TCAAACTTGGGGTCAGGCCT+AGG	-	chr3.2:43705453-43705472	MS.gene94356:CDS	55.0%
	TCTTGCAGAGCTACCACGAG+CGG	+	chr3.2:43705290-43705309	None:intergenic	55.0%
	TGGAGCCTATTGTGGCAGGT+TGG	-	chr3.2:43704946-43704965	MS.gene94356:CDS	55.0%
	TGGTCCACGGCCACTTATGA+TGG	+	chr3.2:43705082-43705101	None:intergenic	55.0%
	TTGGACTTCAGGGCAGTGAC+AGG	+	chr3.2:43704723-43704742	None:intergenic	55.0%
!	GTGGTAGCTCTGCAAGACAG+CGG	-	chr3.2:43705293-43705312	MS.gene94356:CDS	55.0%
!	TGGTAGCTCTGCAAGACAGC+GGG	-	chr3.2:43705294-43705313	MS.gene94356:CDS	55.0%
!!	GGCAGTGACAGGAGTATCAG+TGG	+	chr3.2:43704712-43704731	None:intergenic	55.0%
	CACAACATGGGGCACACCAC+CGG	-	chr3.2:43705333-43705352	MS.gene94356:CDS	60.0%
	GACGGGTCAACCCCATTGGT+TGG	-	chr3.2:43705032-43705051	MS.gene94356:CDS	60.0%
	TGGAGACGGGTCAACCCCAT+TGG	-	chr3.2:43705028-43705047	MS.gene94356:CDS	60.0%
	TGGGTGGAGCCTATTGTGGC+AGG	-	chr3.2:43704942-43704961	MS.gene94356:CDS	60.0%
	TTGGGGTCAGGCCTAGGTCA+TGG	-	chr3.2:43705459-43705478	MS.gene94356:CDS	60.0%
!	ACAGCGGGGTGCTTGTGTCA+CGG	-	chr3.2:43705309-43705328	MS.gene94356:CDS	60.0%
!	GGTAGCTCTGCAAGACAGCG+GGG	-	chr3.2:43705295-43705314	MS.gene94356:CDS	60.0%
	GAGTAGGCTTCCACCGCTCG+TGG	-	chr3.2:43705274-43705293	MS.gene94356:CDS	65.0%
	TGCAGAGCTACCACGAGCGG+TGG	+	chr3.2:43705287-43705306	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	43704603	43705541	43704603	ID=MS.gene94356
chr3.2	mRNA	43704603	43705541	43704603	ID=MS.gene94356.t1;Parent=MS.gene94356
chr3.2	exon	43704603	43705541	43704603	ID=MS.gene94356.t1.exon1;Parent=MS.gene94356.t1
chr3.2	CDS	43704603	43705541	43704603	ID=cds.MS.gene94356.t1;Parent=MS.gene94356.t1

Gene Sequence

>MS.gene94356

ATGTCTTCCTTAGTCCAACACAAGTGTCTTCCCAGCTTTCACCACCAAGTTTTCACAAAGAACACTATCATCCACCGAATTTGCGTCAATTGCTCCGCCACCACTACCACTGATACTCCTGTCACTGCCCTGAAGTCCAATCCCAATGCTAATCAATTGATCATTGAGCCGAAACTTGCACGACCGCCAATAAAAGTGGTAACTGATGCTAACCGTCCAATGGACAATGACCCTAGTTTGGAATCAACATGGTCTCATCGAGCATGGGTGACAGTTGGATGCACAACATTGCTCATTTCGTTGGGAGAGTCCATTAAAGGTTCGATGGATATGAATATGTGGGTGGAGCCTATTGTGGCAGGTTGGATTGGTTACATCTTAGCTGATCTTGGGTCCGGAGTTTACCATTGGGCCATTGATAATTATGGAGACGGGTCAACCCCATTGGTTGGTGCCCAAATTGAAGCTTTCCAAGGCCATCATAAGTGGCCGTGGACCATTACTAAGCGTCAATTTGCCAACAATTTGCACTCACTCGCACGTATGGTAACTTTTGTAGTGCTTCCTATCAATCTTCTTTTCCATGACCCTATTGTTCAAAGTTTTGTTGGGGTGTGTGCCGGTTGTATTATGTTTAGCCAACAATTTCATGCATGGGCTCATGGGACAAAGAGTAGGCTTCCACCGCTCGTGGTAGCTCTGCAAGACAGCGGGGTGCTTGTGTCACGGTCACAACATGGGGCACACCACCGGCCGCCGTATAACAATAATTATTGCATAGTAAGTGGAGTGTGGAATGAGTTTTTGGATAAAACTAAAGCTTTTGAAGCTATGGAAATGATATTGTATTTCAAACTTGGGGTCAGGCCTAGGTCATGGAGTGAGCCTTCTTCTGAGTGGATAGAGGAGATTGAGATTGCTTCTCAAAGCCAAACCTAA

Protein sequence

>MS.gene94356.t1

MSSLVQHKCLPSFHHQVFTKNTIIHRICVNCSATTTTDTPVTALKSNPNANQLIIEPKLARPPIKVVTDANRPMDNDPSLESTWSHRAWVTVGCTTLLISLGESIKGSMDMNMWVEPIVAGWIGYILADLGSGVYHWAIDNYGDGSTPLVGAQIEAFQGHHKWPWTITKRQFANNLHSLARMVTFVVLPINLLFHDPIVQSFVGVCAGCIMFSQQFHAWAHGTKSRLPPLVVALQDSGVLVSRSQHGAHHRPPYNNNYCIVSGVWNEFLDKTKAFEAMEMILYFKLGVRPRSWSEPSSEWIEEIEIASQSQT