AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027320.t1 MTR_7g053500 97.494 439 11 0 25 463 25 463 0.0 892
MS.gene027320.t1 MTR_7g053500 97.409 386 10 0 78 463 1 386 0.0 787
MS.gene027320.t1 MTR_8g012400 72.138 463 124 2 1 463 6 463 0.0 717
MS.gene027320.t1 MTR_8g012400 74.352 386 96 1 78 463 1 383 0.0 625
MS.gene027320.t1 MTR_4g088155 55.150 466 199 3 1 463 4 462 0.0 561
MS.gene027320.t1 MTR_1g056640 41.485 458 240 7 27 460 39 492 1.15e-123 369
MS.gene027320.t1 MTR_5g085580 40.492 447 249 6 27 460 26 468 3.28e-120 359
MS.gene027320.t1 MTR_6g088885 38.696 460 265 9 4 458 7 454 6.22e-112 340
MS.gene027320.t1 MTR_4g069940 37.757 437 264 6 27 460 30 461 5.74e-104 318
MS.gene027320.t1 MTR_3g116510 37.527 461 268 9 4 458 8 454 1.05e-99 306
MS.gene027320.t1 MTR_4g010200 42.577 357 193 6 3 355 11 359 4.10e-97 298
MS.gene027320.t1 MTR_4g132280 38.073 436 253 7 27 459 46 467 2.63e-94 295
MS.gene027320.t1 MTR_3g065460 35.129 464 276 8 1 459 3 446 7.80e-94 292
MS.gene027320.t1 MTR_8g085720 34.633 436 269 6 27 459 27 449 2.90e-93 291
MS.gene027320.t1 MTR_1g022160 36.543 457 258 9 27 458 25 474 1.06e-92 289
MS.gene027320.t1 MTR_8g102340 36.721 433 230 8 27 458 29 418 1.11e-92 289
MS.gene027320.t1 MTR_1g022160 36.543 457 258 9 27 458 25 474 1.48e-91 286
MS.gene027320.t1 MTR_1g031900 33.623 461 287 7 1 458 1 445 1.58e-90 284
MS.gene027320.t1 MTR_1g031900 33.623 461 287 7 1 458 1 445 1.88e-90 284
MS.gene027320.t1 MTR_1g022160 36.222 450 255 9 27 451 25 467 4.16e-89 280
MS.gene027320.t1 MTR_4g084480 42.901 324 179 5 27 349 26 344 1.35e-88 275
MS.gene027320.t1 MTR_3g080410 42.813 327 182 4 21 346 21 343 1.59e-88 275
MS.gene027320.t1 MTR_4g084480 42.769 325 180 5 27 350 33 352 2.06e-88 275
MS.gene027320.t1 MTR_4g084480 42.769 325 180 5 27 350 33 352 2.54e-88 275
MS.gene027320.t1 MTR_4g083500 36.226 461 268 11 18 459 33 486 2.36e-87 277
MS.gene027320.t1 MTR_3g083580 33.477 463 277 10 2 458 9 446 3.76e-87 275
MS.gene027320.t1 MTR_5g078200 33.978 465 281 10 1 459 1 445 1.46e-86 278
MS.gene027320.t1 MTR_4g052970 40.419 334 193 5 27 359 30 358 4.16e-86 269
MS.gene027320.t1 MTR_2g086530 41.420 338 178 8 27 357 9 333 5.18e-86 268
MS.gene027320.t1 MTR_2g086530 41.420 338 178 8 27 357 30 354 9.65e-86 268
MS.gene027320.t1 MTR_2g019345 40.230 348 201 5 1 348 1 341 1.76e-85 268
MS.gene027320.t1 MTR_5g078200 34.038 426 264 7 37 459 1 412 1.27e-84 272
MS.gene027320.t1 MTR_7g026340 37.358 439 254 11 27 458 24 448 5.63e-84 266
MS.gene027320.t1 MTR_1g007810 45.171 321 166 6 27 345 17 329 4.43e-83 260
MS.gene027320.t1 MTR_1g077990 41.049 324 184 5 27 349 32 349 2.13e-81 258
MS.gene027320.t1 MTR_4g114850 37.313 335 205 4 17 350 17 347 1.52e-80 254
MS.gene027320.t1 MTR_4g114850 37.313 335 205 4 17 350 17 347 1.94e-80 254
MS.gene027320.t1 MTR_4g114850 37.313 335 205 4 17 350 17 347 3.70e-80 254
MS.gene027320.t1 MTR_1g022160 38.769 325 193 5 27 349 25 345 1.10e-71 233
MS.gene027320.t1 MTR_3g116510 37.576 330 192 7 133 458 1 320 1.08e-69 224
MS.gene027320.t1 MTR_1g052430 37.578 322 187 7 27 346 33 342 9.87e-67 219
MS.gene027320.t1 MTR_2g034470 35.135 333 198 8 23 351 27 345 1.07e-65 215
MS.gene027320.t1 MTR_2g034440 35.185 324 192 8 23 342 19 328 3.42e-65 213
MS.gene027320.t1 MTR_2g034480 35.511 352 206 11 3 351 9 342 3.64e-64 211
MS.gene027320.t1 MTR_4g076470 36.449 321 181 10 27 344 24 324 8.43e-64 209
MS.gene027320.t1 MTR_1g053320 31.356 472 285 18 1 459 12 457 9.24e-63 211
MS.gene027320.t1 MTR_7g081350 35.294 323 197 6 22 344 23 333 9.93e-63 207
MS.gene027320.t1 MTR_4g076255 36.420 324 187 8 27 349 26 331 1.61e-62 206
MS.gene027320.t1 MTR_4g076570 34.579 321 198 6 27 346 23 332 2.57e-61 204
MS.gene027320.t1 MTR_4g076430 36.810 326 183 10 27 349 24 329 3.11e-61 202
MS.gene027320.t1 MTR_4g076490 34.412 340 201 9 14 350 85 405 4.76e-61 205
MS.gene027320.t1 MTR_4g076500 36.478 318 184 8 27 341 79 381 9.46e-61 203
MS.gene027320.t1 MTR_2g034470 34.365 323 194 8 33 351 2 310 2.67e-60 200
MS.gene027320.t1 MTR_4g076440 35.890 326 186 10 27 349 24 329 1.70e-59 198
MS.gene027320.t1 MTR_8g092070 32.653 441 272 16 27 459 35 458 2.41e-59 204
MS.gene027320.t1 MTR_7g081370 34.591 318 183 6 27 344 29 321 2.72e-57 192
MS.gene027320.t1 MTR_1g010120 30.942 446 270 17 27 458 27 448 4.99e-57 196
MS.gene027320.t1 MTR_4g112025 29.638 469 296 19 4 459 10 457 1.51e-54 190
MS.gene027320.t1 MTR_2g027560 32.063 446 277 16 21 458 23 450 1.93e-54 189
MS.gene027320.t1 MTR_4g124440 31.106 434 265 18 38 458 39 451 5.67e-54 188
MS.gene027320.t1 MTR_3g108600 29.741 464 275 16 3 458 15 435 7.44e-54 187
MS.gene027320.t1 MTR_3g095050 30.682 440 280 16 27 459 35 456 1.20e-53 187
MS.gene027320.t1 MTR_3g031770 29.018 448 288 16 20 459 21 446 1.32e-52 184
MS.gene027320.t1 MTR_5g081720 36.275 306 183 8 47 349 58 354 6.95e-51 177
MS.gene027320.t1 MTR_7g085390 26.180 466 310 19 6 458 6 450 6.17e-40 150
MS.gene027320.t1 MTR_4g134280 31.921 354 214 15 113 458 2 336 2.06e-39 146
MS.gene027320.t1 MTR_6g032820 27.442 430 279 18 27 442 27 437 5.98e-39 146
MS.gene027320.t1 MTR_5g015720 23.666 431 266 10 51 458 24 414 3.49e-29 119
MS.gene027320.t1 MTR_8g063490 46.667 105 45 1 298 402 4 97 7.64e-26 101
MS.gene027320.t1 MTR_1g116870 48.315 89 45 1 370 458 272 359 2.85e-20 92.4
MS.gene027320.t1 MTR_5g097420 41.414 99 55 1 360 458 19 114 7.92e-20 85.1
MS.gene027320.t1 MTR_8g085440 45.556 90 48 1 370 459 28 116 8.27e-20 85.1
MS.gene027320.t1 MTR_4g133735 43.529 85 48 0 374 458 28 112 7.72e-19 82.4
MS.gene027320.t1 MTR_4g133730 41.176 85 50 0 374 458 28 112 1.18e-18 82.0
MS.gene027320.t1 MTR_8g085390 46.067 89 47 1 374 462 30 117 2.33e-18 83.2
MS.gene027320.t1 MTR_8g471000 47.561 82 43 0 129 210 2 83 2.54e-18 80.1
MS.gene027320.t1 MTR_8g089400 40.196 102 60 1 360 460 22 123 5.25e-18 81.3
MS.gene027320.t1 MTR_8g089400 40.196 102 60 1 360 460 42 143 1.60e-17 80.5
MS.gene027320.t1 MTR_8g085420 44.318 88 48 1 370 457 28 114 1.38e-16 76.6
MS.gene027320.t1 MTR_4g079530 42.857 91 52 0 370 460 33 123 4.16e-16 75.1
MS.gene027320.t1 MTR_5g091650 39.560 91 54 1 371 461 105 194 7.84e-16 76.3
MS.gene027320.t1 MTR_4g079530 42.857 91 52 0 370 460 33 123 8.25e-16 75.5
MS.gene027320.t1 MTR_5g091650 38.710 93 56 1 370 462 104 195 9.26e-16 77.8
MS.gene027320.t1 MTR_4g036680 32.609 138 76 4 209 346 55 175 1.29e-15 76.3
MS.gene027320.t1 MTR_4g036775 34.615 130 77 3 217 346 54 175 1.76e-15 75.9
MS.gene027320.t1 MTR_4g036775 36.471 85 54 0 5 89 1 85 9.19e-11 62.0
MS.gene027320.t1 MTR_3g048280 38.095 105 63 2 352 455 89 192 7.95e-15 73.6
MS.gene027320.t1 MTR_3g082080 44.318 88 48 1 365 452 148 234 1.62e-14 73.6
MS.gene027320.t1 MTR_2g049670 43.529 85 46 2 374 458 158 240 8.42e-14 72.8
MS.gene027320.t1 MTR_8g085400 43.210 81 42 2 372 452 31 107 3.00e-13 66.6
MS.gene027320.t1 MTR_7g111600 40.698 86 50 1 374 459 160 244 3.68e-13 69.7
MS.gene027320.t1 MTR_7g111600 40.698 86 50 1 374 459 160 244 4.97e-13 70.1
MS.gene027320.t1 MTR_7g111600 40.698 86 50 1 374 459 160 244 7.06e-13 69.7
MS.gene027320.t1 MTR_8g088120 41.667 72 41 1 389 460 63 133 3.86e-12 66.2
MS.gene027320.t1 MTR_1g084820 40.000 85 49 2 370 454 416 498 1.07e-11 67.4
MS.gene027320.t1 MTR_1g084820 40.000 85 49 2 370 454 416 498 1.11e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027320.t1 AT3G07320 66.592 446 147 1 18 463 17 460 0.0 639
MS.gene027320.t1 AT3G23770 55.830 446 193 2 21 463 32 476 0.0 538
MS.gene027320.t1 AT4G14080 52.192 479 212 2 1 463 1 478 0.0 533
MS.gene027320.t1 AT4G26830 42.333 463 254 8 1 460 1 453 2.11e-129 382
MS.gene027320.t1 AT4G26830 42.793 444 242 7 20 460 23 457 2.67e-127 377
MS.gene027320.t1 AT5G55180 41.964 448 241 7 21 460 22 458 9.03e-125 371
MS.gene027320.t1 AT5G55180 41.818 440 237 7 21 452 22 450 1.68e-119 357
MS.gene027320.t1 AT2G05790 39.866 449 251 7 27 460 26 470 8.40e-117 351
MS.gene027320.t1 AT5G56590 38.864 440 260 6 21 458 21 453 1.66e-108 331
MS.gene027320.t1 AT4G29360 38.413 479 263 7 4 458 15 485 4.81e-104 320
MS.gene027320.t1 AT4G29360 38.745 462 251 7 21 458 22 475 5.87e-104 320
MS.gene027320.t1 AT5G24318 37.391 460 277 7 1 458 5 455 3.56e-102 313
MS.gene027320.t1 AT5G24318 37.225 454 274 7 1 452 5 449 2.19e-98 303
MS.gene027320.t1 AT4G34480 37.687 467 264 10 1 459 1 448 1.42e-96 300
MS.gene027320.t1 AT2G16230 37.900 438 254 8 27 459 26 450 4.11e-95 296
MS.gene027320.t1 AT2G01630 36.468 436 260 7 27 459 24 445 1.53e-94 295
MS.gene027320.t1 AT2G01630 36.131 429 257 7 27 452 24 438 2.25e-91 285
MS.gene027320.t1 AT3G55430 36.652 442 260 11 21 458 24 449 4.02e-91 284
MS.gene027320.t1 AT1G66250 34.483 435 267 8 27 458 33 452 1.44e-88 279
MS.gene027320.t1 AT3G13560 34.023 435 269 7 27 458 27 446 1.12e-87 277
MS.gene027320.t1 AT3G13560 34.023 435 269 7 27 458 27 446 1.12e-87 277
MS.gene027320.t1 AT3G13560 34.023 435 269 7 27 458 27 446 1.12e-87 277
MS.gene027320.t1 AT3G13560 34.023 435 269 7 27 458 27 446 1.12e-87 277
MS.gene027320.t1 AT3G13560 34.023 435 269 7 27 458 27 446 1.12e-87 277
MS.gene027320.t1 AT1G11820 33.945 436 271 7 27 459 45 466 3.14e-87 276
MS.gene027320.t1 AT3G15800 40.597 335 193 5 18 350 35 365 1.15e-84 266
MS.gene027320.t1 AT4G18340 40.741 324 186 5 27 349 35 353 5.69e-84 263
MS.gene027320.t1 AT4G18340 40.741 324 186 5 27 349 35 353 1.28e-83 263
MS.gene027320.t1 AT1G11820 33.333 429 269 7 27 452 45 459 9.90e-83 263
MS.gene027320.t1 AT2G27500 38.253 332 200 4 27 357 30 357 1.75e-81 257
MS.gene027320.t1 AT1G30080 39.535 344 202 5 4 346 14 352 2.90e-81 256
MS.gene027320.t1 AT2G27500 38.253 332 200 4 27 357 30 357 4.27e-81 256
MS.gene027320.t1 AT1G30080 39.535 344 202 5 4 346 14 352 5.48e-81 256
MS.gene027320.t1 AT5G42720 41.360 353 196 7 2 352 7 350 3.53e-80 255
MS.gene027320.t1 AT5G24318 39.429 350 202 6 1 348 5 346 7.03e-80 253
MS.gene027320.t1 AT1G32860 40.187 321 188 4 27 346 30 347 8.65e-80 254
MS.gene027320.t1 AT2G39640 35.435 460 269 14 4 459 8 443 3.11e-77 251
MS.gene027320.t1 AT2G26600 35.988 339 209 5 21 355 29 363 4.87e-76 243
MS.gene027320.t1 AT3G57270 39.877 326 182 7 25 348 26 339 2.18e-75 240
MS.gene027320.t1 AT4G34480 38.889 360 209 7 1 356 1 353 3.05e-75 240
MS.gene027320.t1 AT5G42100 39.329 328 192 6 24 348 25 348 2.17e-74 240
MS.gene027320.t1 AT5G42100 39.329 328 192 6 24 348 25 348 2.81e-74 240
MS.gene027320.t1 AT3G61810 37.758 339 193 6 18 349 45 372 2.86e-73 236
MS.gene027320.t1 AT5G24318 39.355 310 180 4 149 458 15 316 1.41e-71 229
MS.gene027320.t1 AT2G01630 35.263 380 229 7 27 403 24 389 1.88e-71 231
MS.gene027320.t1 AT4G34480 38.746 351 194 7 114 459 3 337 9.85e-71 229
MS.gene027320.t1 AT4G16260 36.950 341 192 11 3 339 4 325 1.31e-66 217
MS.gene027320.t1 AT3G46570 37.309 327 194 7 25 348 26 344 3.48e-64 211
MS.gene027320.t1 AT1G33220 37.048 332 193 9 3 330 8 327 8.29e-64 209
MS.gene027320.t1 AT2G27500 37.589 282 171 4 77 357 2 279 2.69e-63 207
MS.gene027320.t1 AT5G20340 37.578 322 187 9 27 346 44 353 2.82e-63 209
MS.gene027320.t1 AT5G20330 37.059 340 198 9 3 338 8 335 2.95e-63 209
MS.gene027320.t1 AT5G20390 36.905 336 198 9 4 338 12 334 7.96e-63 207
MS.gene027320.t1 AT4G16260 36.893 309 179 9 33 339 2 296 1.99e-61 203
MS.gene027320.t1 AT2G26600 37.363 273 163 5 87 355 1 269 8.09e-61 201
MS.gene027320.t1 AT3G57260 33.526 346 212 8 4 349 12 339 1.05e-60 202
MS.gene027320.t1 AT3G57260 33.815 346 211 8 4 349 28 355 1.50e-60 202
MS.gene027320.t1 AT3G24330 30.603 464 297 16 5 459 18 465 1.90e-60 206
MS.gene027320.t1 AT1G11820 33.028 327 212 5 27 350 45 367 3.06e-59 199
MS.gene027320.t1 AT1G77780 34.012 344 215 7 3 346 1 332 4.87e-59 198
MS.gene027320.t1 AT4G31140 29.186 442 282 17 27 458 28 448 1.58e-55 192
MS.gene027320.t1 AT3G57240 34.177 316 189 8 25 339 34 331 2.41e-55 187
MS.gene027320.t1 AT3G55780 33.333 315 196 8 40 349 49 354 1.82e-51 179
MS.gene027320.t1 AT5G20870 30.591 474 288 21 4 459 10 460 2.08e-50 179
MS.gene027320.t1 AT1G77790 31.562 320 210 5 27 346 31 341 8.82e-50 173
MS.gene027320.t1 AT4G17180 30.022 463 283 18 6 458 9 440 1.12e-49 176
MS.gene027320.t1 AT5G20560 35.673 342 201 11 3 338 8 336 1.68e-49 172
MS.gene027320.t1 AT5G18220 29.258 458 289 18 16 459 20 456 2.06e-48 173
MS.gene027320.t1 AT5G58090 29.530 447 286 17 23 459 19 446 3.13e-46 167
MS.gene027320.t1 AT3G04010 28.510 463 295 20 11 459 18 458 1.33e-45 166
MS.gene027320.t1 AT5G64790 27.027 444 293 15 27 459 29 452 1.73e-44 162
MS.gene027320.t1 AT5G58480 27.640 445 282 16 27 458 27 444 5.66e-44 161
MS.gene027320.t1 AT2G19440 28.668 443 287 19 27 459 22 445 1.09e-41 155
MS.gene027320.t1 AT2G19440 28.668 443 287 19 27 459 22 445 1.09e-41 155
MS.gene027320.t1 AT1G64760 27.928 444 289 20 27 459 26 449 3.42e-40 150
MS.gene027320.t1 AT1G64760 27.928 444 289 20 27 459 26 449 3.42e-40 150
MS.gene027320.t1 AT5G67460 43.925 107 54 2 358 458 271 377 4.36e-22 98.2
MS.gene027320.t1 AT5G67460 43.564 101 51 2 358 452 271 371 3.89e-19 89.4
MS.gene027320.t1 AT5G35740 38.614 101 60 2 359 458 16 115 4.79e-18 80.5
MS.gene027320.t1 AT2G30933 44.944 89 48 1 374 462 82 169 3.11e-17 81.3
MS.gene027320.t1 AT4G13600 47.126 87 45 1 373 459 60 145 3.45e-17 81.3
MS.gene027320.t1 AT4G05430 37.383 107 62 2 353 458 5 107 3.94e-17 78.6
MS.gene027320.t1 AT2G04910 39.773 88 53 0 374 461 15 102 1.90e-16 75.5
MS.gene027320.t1 AT5G61130 43.023 86 48 1 374 459 21 105 7.02e-16 76.6
MS.gene027320.t1 AT4G05430 36.697 109 64 2 353 460 30 134 1.01e-15 75.1
MS.gene027320.t1 AT1G79480 40.000 85 50 1 374 458 311 394 1.52e-15 78.6
MS.gene027320.t1 AT1G79480 40.000 85 50 1 374 458 310 393 1.58e-15 78.6
MS.gene027320.t1 AT1G66870 35.227 88 57 0 371 458 50 137 2.14e-15 73.6
MS.gene027320.t1 AT1G66870 35.227 88 57 0 371 458 23 110 4.00e-15 71.6
MS.gene027320.t1 AT4G09462 35.789 95 60 1 366 460 21 114 8.89e-15 70.9
MS.gene027320.t1 AT1G29380 42.353 85 48 1 374 458 148 231 1.72e-14 74.7
MS.gene027320.t1 AT1G29380 42.529 87 49 1 374 460 148 233 2.05e-14 73.6
MS.gene027320.t1 AT1G18650 39.130 92 55 1 369 460 16 106 5.19e-14 70.9
MS.gene027320.t1 AT4G09467 35.955 89 56 1 372 460 29 116 8.29e-14 68.2
MS.gene027320.t1 AT4G09464 35.955 89 56 1 372 460 29 116 8.29e-14 68.2
MS.gene027320.t1 AT3G58100 37.079 89 56 0 372 460 39 127 8.60e-14 70.1
MS.gene027320.t1 AT4G09465 35.955 89 56 1 372 460 29 116 8.70e-14 68.2
MS.gene027320.t1 AT5G63225 36.471 85 53 1 374 458 25 108 1.09e-13 67.8
MS.gene027320.t1 AT4G05430 36.634 101 59 2 353 452 30 126 1.26e-13 68.2
MS.gene027320.t1 AT3G58100 37.079 89 56 0 372 460 115 203 1.46e-13 70.9
MS.gene027320.t1 AT5G63250 33.010 103 63 2 360 460 32 130 1.70e-13 67.8
MS.gene027320.t1 AT2G29735 36.264 91 55 2 370 458 27 116 1.83e-13 67.4
MS.gene027320.t1 AT1G18650 39.130 92 55 1 369 460 16 106 2.38e-13 67.4
MS.gene027320.t1 AT1G66852 36.667 90 52 2 371 458 23 109 4.34e-13 65.9
MS.gene027320.t1 AT2G30933 43.038 79 44 1 374 452 82 159 6.29e-13 67.0
MS.gene027320.t1 AT2G30933 43.038 79 44 1 374 452 82 159 6.29e-13 67.0
MS.gene027320.t1 AT1G66855 31.818 88 60 0 371 458 23 110 8.47e-13 65.1
MS.gene027320.t1 AT2G04910 39.241 79 48 0 374 452 15 93 9.55e-13 65.5
MS.gene027320.t1 AT5G08000 40.449 89 52 1 371 459 37 124 2.27e-12 66.6
MS.gene027320.t1 AT4G09466 33.708 89 58 1 372 460 29 116 3.47e-12 63.5
MS.gene027320.t1 AT5G63230 32.941 85 56 1 374 458 26 109 7.06e-12 62.4
MS.gene027320.t1 AT1G09460 38.947 95 55 2 364 458 127 218 9.54e-12 66.6
MS.gene027320.t1 AT1G29380 40.506 79 46 1 374 452 148 225 1.32e-11 64.7
MS.gene027320.t1 AT1G29380 40.506 79 46 1 374 452 148 225 1.32e-11 64.7
MS.gene027320.t1 AT5G08000 40.698 86 50 1 374 459 21 105 1.43e-11 63.9
MS.gene027320.t1 AT4G16165 33.708 89 59 0 370 458 22 110 4.02e-11 60.5

Find 124 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGCGCTTTGCGTTTA+AGG 0.094987 7.1:+48639533 None:intergenic
CGATCCGGTTAATGTTAATT+TGG 0.179943 7.1:-48639055 MS.gene027320:CDS
GGAGGAACTTGTTACTTTAA+TGG 0.216813 7.1:-48638376 MS.gene027320:CDS
CACCAAATCTTCCCTTTATA+TGG 0.228008 7.1:+48638577 None:intergenic
GCTATGCGTTTAGTTCTTAC+TGG 0.231015 7.1:-48638417 MS.gene027320:CDS
CCAGGTACCGAACGACATTT+TGG 0.235391 7.1:-48638700 MS.gene027320:CDS
GATGGAGAAACTTGGGTTTC+CGG 0.239471 7.1:-48638929 MS.gene027320:CDS
CAACAAGGAGGTAACGGATT+AGG 0.244733 7.1:+48639352 None:intergenic
ATTAGGGTTTGTGGGTAATA+AGG 0.261206 7.1:+48639369 None:intergenic
TACGGTTAAGGATCCGGGTT+CGG 0.285504 7.1:-48639004 MS.gene027320:CDS
TAAGGATCCGGGTTCGGGTT+TGG 0.304227 7.1:-48638998 MS.gene027320:CDS
TTTAAGGTTGTTAGGATTTG+TGG 0.304363 7.1:+48639495 None:intergenic
ACGGTTAAGGATCCGGGTTC+GGG 0.304864 7.1:-48639003 MS.gene027320:CDS
AACAAGGAGGTAACGGATTA+GGG 0.311031 7.1:+48639353 None:intergenic
GAGAATAATGAGCCATATAA+AGG 0.315438 7.1:-48638589 MS.gene027320:CDS
GAGGAACTTGTTACTTTAAT+GGG 0.318934 7.1:-48638375 MS.gene027320:CDS
TATTGTATCCGAACGGGTCT+AGG 0.329429 7.1:-48638675 MS.gene027320:CDS
TGGGCTCAGTTTAAGAAGAT+TGG 0.335934 7.1:-48638397 MS.gene027320:CDS
CGGATATTTATCGCGGAAAC+GGG 0.349889 7.1:-48638901 MS.gene027320:CDS
TCCATTGGTCGGAGAGGGTT+TGG 0.366090 7.1:+48639409 None:intergenic
AGCCATATAAAGGGAAGATT+TGG 0.372684 7.1:-48638579 MS.gene027320:CDS
CTAATCCGTTACCTCCTTGT+TGG 0.380083 7.1:-48639351 MS.gene027320:CDS
TAATCCAAATTAACATTAAC+CGG 0.382121 7.1:+48639051 None:intergenic
GCGGAAACGGGTTGGCCTAA+TGG 0.386035 7.1:-48638889 MS.gene027320:CDS
AGTTGACCGTAGCAGATTCC+TGG 0.387463 7.1:+48639603 None:intergenic
TGCGTTTAAGGATTTGATTA+AGG 0.388788 7.1:+48639545 None:intergenic
TTAAGGTTGTTAGGATTTGT+GGG 0.390167 7.1:+48639496 None:intergenic
AACTTGGGTTTCCGGATGTT+CGG 0.396533 7.1:-48638921 MS.gene027320:CDS
ATGCTTGCTCGCAGGGGAAC+CGG 0.399988 7.1:-48638504 MS.gene027320:CDS
GTTTAATGAGAATATTAAAC+CGG 0.401130 7.1:-48638725 MS.gene027320:CDS
AGATGAGGCCACGTGGAGTT+TGG 0.401768 7.1:+48639306 None:intergenic
CCAAAATGTCGTTCGGTACC+TGG 0.404544 7.1:+48638700 None:intergenic
GGTGGTGATGTTGATCAAAT+TGG 0.406359 7.1:-48638868 MS.gene027320:CDS
AGAGACTAATGTTACGGTTA+AGG 0.407650 7.1:-48639016 MS.gene027320:CDS
TAATGTTACGGTTAAGGATC+CGG 0.408887 7.1:-48639010 MS.gene027320:CDS
TCGGATATTTATCGCGGAAA+CGG 0.419442 7.1:-48638902 MS.gene027320:CDS
ATGTTTGTGATGAGTTCGTT+TGG 0.429565 7.1:+48639441 None:intergenic
GGGAGTAATGTGACGGCACT+AGG 0.433307 7.1:-48638541 MS.gene027320:CDS
GTTTATGACATTGATCTATC+GGG 0.437070 7.1:-48638652 MS.gene027320:CDS
TGTTGGGACACCGGCTAGAC+CGG 0.437582 7.1:-48638779 MS.gene027320:CDS
TGAAATGTTGTTGAGTAGAA+TGG 0.438583 7.1:+48639783 None:intergenic
TACGAATTTATTTGATCAGA+TGG 0.440268 7.1:-48638971 MS.gene027320:CDS
AGTTGGTACTTCTTCTGCTA+TGG 0.450725 7.1:-48639223 MS.gene027320:CDS
GGTTTATGACATTGATCTAT+CGG 0.452005 7.1:-48638653 MS.gene027320:CDS
TTGGGTTATTGTATCCGAAC+GGG 0.453332 7.1:-48638681 MS.gene027320:CDS
TTACGAAACGCAGCGTTTGA+AGG 0.455167 7.1:+48639177 None:intergenic
AAGTTATTAAACCGATGCTT+AGG 0.456379 7.1:-48639140 MS.gene027320:CDS
TTCTCCGGTGGAGGAAGTGC+TGG 0.459187 7.1:+48638607 None:intergenic
CTATGCGTTTAGTTCTTACT+GGG 0.467912 7.1:-48638416 MS.gene027320:CDS
AGAATAATGAGCCATATAAA+GGG 0.469941 7.1:-48638588 MS.gene027320:CDS
TGTTTGTGATGAGTTCGTTT+GGG 0.471998 7.1:+48639442 None:intergenic
TTCCAAGTGTGACACTTTGA+AGG 0.487564 7.1:-48637902 None:intergenic
GTTTAGAGAGACTAATGTTA+CGG 0.487994 7.1:-48639022 MS.gene027320:CDS
CTCCTTCAAAGTGTCACACT+TGG 0.488468 7.1:+48637900 None:intergenic
CTAGCCGGTGTCCCAACAAC+CGG 0.490810 7.1:+48638784 None:intergenic
TTATATGGCTCATTATTCTC+CGG 0.491934 7.1:+48638592 None:intergenic
TGATCAACATCACCACCATT+AGG 0.494772 7.1:+48638874 None:intergenic
GTAGAATGGAGAAGAGAAAG+AGG 0.501465 7.1:+48639797 None:intergenic
GGGGAACCGGACTTGTGATC+CGG 0.503868 7.1:-48638491 MS.gene027320:CDS
GAACGTTGGATTTGATCCAT+TGG 0.505085 7.1:+48639394 None:intergenic
CAATAACCCAAAATGTCGTT+CGG 0.505936 7.1:+48638693 None:intergenic
CGAAACGCAGCGTTTGAAGG+TGG 0.507919 7.1:+48639180 None:intergenic
TTTGATCCATTGGTCGGAGA+GGG 0.508250 7.1:+48639404 None:intergenic
ATTTGGTGTGTGGCGGTGCG+TGG 0.510143 7.1:-48638562 MS.gene027320:CDS
GAGAATATTAAACCGGGTCC+AGG 0.511434 7.1:-48638718 MS.gene027320:CDS
AGTGCTGGATACTCTGACTC+CGG 0.512783 7.1:+48638622 None:intergenic
GCGATAAATATCCGAACATC+CGG 0.517870 7.1:+48638910 None:intergenic
CGTTTCCAACAAGGAGGTAA+CGG 0.518121 7.1:+48639346 None:intergenic
TTGACGTATGCTTGCTCGCA+GGG 0.519727 7.1:-48638511 MS.gene027320:CDS
AGGTAACGGATTAGGGTTTG+TGG 0.521382 7.1:+48639360 None:intergenic
ATTTGATCAGATGGTGGATG+CGG 0.528077 7.1:-48638962 MS.gene027320:CDS
AATGTTACGGTTAAGGATCC+GGG 0.529923 7.1:-48639009 MS.gene027320:CDS
AGAATTGAACCCGGTCTAGC+CGG 0.532603 7.1:+48638769 None:intergenic
GGCTCATTATTCTCCGGTGG+AGG 0.534146 7.1:+48638598 None:intergenic
GGAATCTGCTACGGTCAACT+AGG 0.534218 7.1:-48639600 MS.gene027320:CDS
AGAATCAAAAGAATCAAAGT+TGG 0.535473 7.1:-48639240 MS.gene027320:CDS
ATTGTATCCGAACGGGTCTA+GGG 0.535543 7.1:-48638674 MS.gene027320:CDS
GCTCAGTTTAAGAAGATTGG+AGG 0.537876 7.1:-48638394 MS.gene027320:CDS
GGTAACGGATTAGGGTTTGT+GGG 0.538137 7.1:+48639361 None:intergenic
TGTCGTTCGGTACCTGGACC+CGG 0.539783 7.1:+48638706 None:intergenic
TGTTTGATTCTACGCATCGC+AGG 0.546557 7.1:+48639279 None:intergenic
TGGGTAATAAGGTAGAACGT+TGG 0.547510 7.1:+48639380 None:intergenic
TATTTATCGCGGAAACGGGT+TGG 0.547640 7.1:-48638897 MS.gene027320:CDS
GTTGGGACACCGGCTAGACC+GGG 0.550859 7.1:-48638778 MS.gene027320:CDS
GGAGTAATGTGACGGCACTA+GGG 0.555095 7.1:-48638540 MS.gene027320:CDS
TCATAAACCCTAGACCCGTT+CGG 0.556211 7.1:+48638667 None:intergenic
ACCAAACCCTCTCCGACCAA+TGG 0.556784 7.1:-48639410 MS.gene027320:CDS
GTATCCAGCACTTCCTCCAC+CGG 0.560576 7.1:-48638611 MS.gene027320:CDS
ACTTGTGATCCGGTTCAACC+CGG 0.561213 7.1:-48638481 MS.gene027320:CDS
ATTGACGTATGCTTGCTCGC+AGG 0.564347 7.1:-48638512 MS.gene027320:CDS
TTTGGTGTGTGGCGGTGCGT+GGG 0.564836 7.1:-48638561 MS.gene027320:CDS
GTTGGATTTGATCCATTGGT+CGG 0.568173 7.1:+48639398 None:intergenic
GTTTGATTCTACGCATCGCA+GGG 0.568728 7.1:+48639280 None:intergenic
AAAACCGGTTGTTGGGACAC+CGG 0.571712 7.1:-48638788 MS.gene027320:CDS
CAAATTAACATTAACCGGAT+CGG 0.572394 7.1:+48639056 None:intergenic
TTTGGGTTATTGTATCCGAA+CGG 0.572527 7.1:-48638682 MS.gene027320:CDS
GTTGAACCGGATCACAAGTC+CGG 0.573766 7.1:+48638485 None:intergenic
GTATAAACCAAACCCGAACC+CGG 0.574382 7.1:+48638991 None:intergenic
GAATTTATTTGATCAGATGG+TGG 0.583307 7.1:-48638968 MS.gene027320:CDS
AGATGATTTCGTTTCCAACA+AGG 0.584918 7.1:+48639337 None:intergenic
GAGTAATGTGACGGCACTAG+GGG 0.602111 7.1:-48638539 MS.gene027320:CDS
CGCATCGCAGGGACGAGATG+AGG 0.602336 7.1:+48639291 None:intergenic
CTTGTGATCCGGTTCAACCC+GGG 0.606763 7.1:-48638480 MS.gene027320:CDS
TGATCTATCGGGGAAGACAC+CGG 0.610630 7.1:-48638641 MS.gene027320:CDS
ATTTGATCCATTGGTCGGAG+AGG 0.616370 7.1:+48639403 None:intergenic
TATGGCTCATTATTCTCCGG+TGG 0.617117 7.1:+48638595 None:intergenic
TAATGTGACGGCACTAGGGG+AGG 0.621819 7.1:-48638536 MS.gene027320:CDS
TTTAATGAGAATATTAAACC+GGG 0.624692 7.1:-48638724 MS.gene027320:CDS
AGGCCACGTGGAGTTTGGTG+TGG 0.627760 7.1:+48639311 None:intergenic
TCACAACCAGGAATCTGCTA+CGG 0.630316 7.1:-48639609 MS.gene027320:CDS
TAAAGGGAAGATTTGGTGTG+TGG 0.635044 7.1:-48638572 MS.gene027320:CDS
TTTATGACATTGATCTATCG+GGG 0.635070 7.1:-48638651 MS.gene027320:CDS
GAAACGGGTTGGCCTAATGG+TGG 0.635140 7.1:-48638886 MS.gene027320:CDS
GCTTGCTACTCAAACTGCAA+AGG 0.636317 7.1:-48638353 MS.gene027320:CDS
TGATTTCGTTTCCAACAAGG+AGG 0.653991 7.1:+48639340 None:intergenic
TGCGTTTCGTAAAGATATAG+CGG 0.657744 7.1:-48639166 MS.gene027320:CDS
TGACGTATGCTTGCTCGCAG+GGG 0.669740 7.1:-48638510 MS.gene027320:CDS
GGATGTTCGGATATTTATCG+CGG 0.670356 7.1:-48638908 MS.gene027320:CDS
TTAACCGGATCGGAGCTCCA+AGG 0.673004 7.1:+48639066 None:intergenic
CATCCACACCAAACTCCACG+TGG 0.689929 7.1:-48639314 MS.gene027320:CDS
GGTGCGTGGGAGTAATGTGA+CGG 0.690661 7.1:-48638548 MS.gene027320:CDS
AGGGAAGATTTGGTGTGTGG+CGG 0.713466 7.1:-48638569 MS.gene027320:CDS
AAACTCGGAAGAATTGAACC+CGG 0.715518 7.1:+48638760 None:intergenic
AGGGACGAGATGAGGCCACG+TGG 0.756781 7.1:+48639299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAATGTTAAGTGA+TGG + chr7.1:48639753-48639772 None:intergenic 15.0%
!! AATAAAAAAATGTACTTACT+TGG + chr7.1:48639391-48639410 None:intergenic 15.0%
!! AAAAGAAAAAAGATTTAGTC+CGG + chr7.1:48638610-48638629 None:intergenic 20.0%
!! AACAAAGCAAATAAAAAACT+CGG + chr7.1:48638974-48638993 None:intergenic 20.0%
!! AATCAAGTACTTCAATTTAA+TGG + chr7.1:48639610-48639629 None:intergenic 20.0%
!! CAATTTAATGGTTATACATT+TGG + chr7.1:48639598-48639617 None:intergenic 20.0%
!! GTTTAATGAGAATATTAAAC+CGG - chr7.1:48638991-48639010 MS.gene027320:CDS 20.0%
!! TAAAAAAGCAATGAAAAAAC+CGG - chr7.1:48638913-48638932 MS.gene027320:CDS 20.0%
!! TAATCCAAATTAACATTAAC+CGG + chr7.1:48638668-48638687 None:intergenic 20.0%
!! TTCTTATTAATATACTTCAC+AGG - chr7.1:48638068-48638087 MS.gene027320:intron 20.0%
!! TTTAATGAGAATATTAAACC+GGG - chr7.1:48638992-48639011 MS.gene027320:CDS 20.0%
!!! GTAGTTAAGTTTAATTTAAC+TGG + chr7.1:48639651-48639670 None:intergenic 20.0%
!!! TTGAATGTTTGTGTTTTTTA+AGG + chr7.1:48638240-48638259 None:intergenic 20.0%
! AATCATAACTCACAATTAGA+GGG + chr7.1:48639442-48639461 None:intergenic 25.0%
! AGAATAATGAGCCATATAAA+GGG - chr7.1:48639128-48639147 MS.gene027320:CDS 25.0%
! AGAATCAAAAGAATCAAAGT+TGG - chr7.1:48638476-48638495 MS.gene027320:CDS 25.0%
! TAATCATAACTCACAATTAG+AGG + chr7.1:48639443-48639462 None:intergenic 25.0%
! TACGAATTTATTTGATCAGA+TGG - chr7.1:48638745-48638764 MS.gene027320:CDS 25.0%
! TTCATCCAACAAAAAATTGT+TGG - chr7.1:48639484-48639503 MS.gene027320:CDS 25.0%
!!! AAGTACTTGATTTGTTAACA+AGG - chr7.1:48639618-48639637 MS.gene027320:CDS 25.0%
!!! ATCATCCAACAATTTTTTGT+TGG + chr7.1:48639492-48639511 None:intergenic 25.0%
!!! TCTTTTTTTTGAACATGTGT+AGG - chr7.1:48639774-48639793 MS.gene027320:intron 25.0%
!!! TTGTGTTTTTTAAGGTTGTT+AGG + chr7.1:48638232-48638251 None:intergenic 25.0%
AAGTTATTAAACCGATGCTT+AGG - chr7.1:48638576-48638595 MS.gene027320:CDS 30.0%
ATGACATTTAACATCCATTG+TGG + chr7.1:48639531-48639550 None:intergenic 30.0%
CAAATTAACATTAACCGGAT+CGG + chr7.1:48638663-48638682 None:intergenic 30.0%
GAATTTATTTGATCAGATGG+TGG - chr7.1:48638748-48638767 MS.gene027320:CDS 30.0%
GAGAATAATGAGCCATATAA+AGG - chr7.1:48639127-48639146 MS.gene027320:CDS 30.0%
GGTTTATGACATTGATCTAT+CGG - chr7.1:48639063-48639082 MS.gene027320:CDS 30.0%
GTTTAGAGAGACTAATGTTA+CGG - chr7.1:48638694-48638713 MS.gene027320:CDS 30.0%
GTTTATGACATTGATCTATC+GGG - chr7.1:48639064-48639083 MS.gene027320:CDS 30.0%
TGAAATGTTGTTGAGTAGAA+TGG + chr7.1:48637936-48637955 None:intergenic 30.0%
TGACATTTAACATCCATTGT+GGG + chr7.1:48639530-48639549 None:intergenic 30.0%
TGCGTTTAAGGATTTGATTA+AGG + chr7.1:48638174-48638193 None:intergenic 30.0%
TTAAGGTTGTTAGGATTTGT+GGG + chr7.1:48638223-48638242 None:intergenic 30.0%
TTATATGGCTCATTATTCTC+CGG + chr7.1:48639127-48639146 None:intergenic 30.0%
TTTATGACATTGATCTATCG+GGG - chr7.1:48639065-48639084 MS.gene027320:CDS 30.0%
! ATTAAGGAGAGTGATTTTGA+GGG + chr7.1:48638158-48638177 None:intergenic 30.0%
! TTTAAGGTTGTTAGGATTTG+TGG + chr7.1:48638224-48638243 None:intergenic 30.0%
! TTTTGAACATGTGTAGGTTA+TGG - chr7.1:48639780-48639799 MS.gene027320:intron 30.0%
!! AAAGTGTTTTAAACCCGATT+CGG - chr7.1:48639261-48639280 MS.gene027320:CDS 30.0%
!! AGTGATGGACAAATATAACA+AGG + chr7.1:48639738-48639757 None:intergenic 30.0%
!! GAGGAACTTGTTACTTTAAT+GGG - chr7.1:48639341-48639360 MS.gene027320:CDS 30.0%
!!! ATGTTTATCCGTTTTTTCCT+TGG - chr7.1:48638633-48638652 MS.gene027320:CDS 30.0%
AGAGACTAATGTTACGGTTA+AGG - chr7.1:48638700-48638719 MS.gene027320:CDS 35.0%
AGATGATTTCGTTTCCAACA+AGG + chr7.1:48638382-48638401 None:intergenic 35.0%
AGCCATATAAAGGGAAGATT+TGG - chr7.1:48639137-48639156 MS.gene027320:CDS 35.0%
ATGTTTGTGATGAGTTCGTT+TGG + chr7.1:48638278-48638297 None:intergenic 35.0%
ATTAGGGTTTGTGGGTAATA+AGG + chr7.1:48638350-48638369 None:intergenic 35.0%
CAATAACCCAAAATGTCGTT+CGG + chr7.1:48639026-48639045 None:intergenic 35.0%
CAATGAAAAAACCGGTTGTT+GGG - chr7.1:48638921-48638940 MS.gene027320:CDS 35.0%
CACCAAATCTTCCCTTTATA+TGG + chr7.1:48639142-48639161 None:intergenic 35.0%
CGATCCGGTTAATGTTAATT+TGG - chr7.1:48638661-48638680 MS.gene027320:CDS 35.0%
CGGTTTAAAAACCTAAGCAT+CGG + chr7.1:48638590-48638609 None:intergenic 35.0%
TAATGTTACGGTTAAGGATC+CGG - chr7.1:48638706-48638725 MS.gene027320:CDS 35.0%
TCTTAGTATTGTTCCCACAA+TGG - chr7.1:48639514-48639533 MS.gene027320:CDS 35.0%
TGCGTTTCGTAAAGATATAG+CGG - chr7.1:48638550-48638569 MS.gene027320:CDS 35.0%
TGTTTGTGATGAGTTCGTTT+GGG + chr7.1:48638277-48638296 None:intergenic 35.0%
TTCTTCAATCTCATCTCTCT+GGG - chr7.1:48637981-48638000 MS.gene027320:intron 35.0%
TTTCTTCAATCTCATCTCTC+TGG - chr7.1:48637980-48637999 MS.gene027320:intron 35.0%
! ATTTTGCGATGGAGAAACTT+GGG - chr7.1:48638780-48638799 MS.gene027320:CDS 35.0%
! CGATGCTTAGGTTTTTAAAC+CGG - chr7.1:48638588-48638607 MS.gene027320:CDS 35.0%
! GATTAAGGAGAGTGATTTTG+AGG + chr7.1:48638159-48638178 None:intergenic 35.0%
! TATTTTGCGATGGAGAAACT+TGG - chr7.1:48638779-48638798 MS.gene027320:CDS 35.0%
! TTTGGGTTATTGTATCCGAA+CGG - chr7.1:48639034-48639053 MS.gene027320:CDS 35.0%
!! CTATGCGTTTAGTTCTTACT+GGG - chr7.1:48639300-48639319 MS.gene027320:CDS 35.0%
!! GGAGGAACTTGTTACTTTAA+TGG - chr7.1:48639340-48639359 MS.gene027320:CDS 35.0%
!!! GGGTTTAAAACACTTTTTCC+CGG + chr7.1:48639257-48639276 None:intergenic 35.0%
!!! GGTTTAAAACACTTTTTCCC+GGG + chr7.1:48639256-48639275 None:intergenic 35.0%
!!! TTAAACCCGATTCGGTTTTT+TGG - chr7.1:48639269-48639288 MS.gene027320:CDS 35.0%
AAACTCGGAAGAATTGAACC+CGG + chr7.1:48638959-48638978 None:intergenic 40.0%
AATGTTACGGTTAAGGATCC+GGG - chr7.1:48638707-48638726 MS.gene027320:CDS 40.0%
AGCATGCCAAAAAACCGAAT+CGG + chr7.1:48639278-48639297 None:intergenic 40.0%
GAACGTTGGATTTGATCCAT+TGG + chr7.1:48638325-48638344 None:intergenic 40.0%
GCAATGAAAAAACCGGTTGT+TGG - chr7.1:48638920-48638939 MS.gene027320:CDS 40.0%
GCGATAAATATCCGAACATC+CGG + chr7.1:48638809-48638828 None:intergenic 40.0%
GCTCAGTTTAAGAAGATTGG+AGG - chr7.1:48639322-48639341 MS.gene027320:CDS 40.0%
GGATGTTCGGATATTTATCG+CGG - chr7.1:48638808-48638827 MS.gene027320:CDS 40.0%
GTAGAATGGAGAAGAGAAAG+AGG + chr7.1:48637922-48637941 None:intergenic 40.0%
GTTGGATTTGATCCATTGGT+CGG + chr7.1:48638321-48638340 None:intergenic 40.0%
TCGGATATTTATCGCGGAAA+CGG - chr7.1:48638814-48638833 MS.gene027320:CDS 40.0%
TGATCAACATCACCACCATT+AGG + chr7.1:48638845-48638864 None:intergenic 40.0%
TGATTTCGTTTCCAACAAGG+AGG + chr7.1:48638379-48638398 None:intergenic 40.0%
TGGGCTCAGTTTAAGAAGAT+TGG - chr7.1:48639319-48639338 MS.gene027320:CDS 40.0%
TGGGTAATAAGGTAGAACGT+TGG + chr7.1:48638339-48638358 None:intergenic 40.0%
TTGGGTTATTGTATCCGAAC+GGG - chr7.1:48639035-48639054 MS.gene027320:CDS 40.0%
TTTGATGCGCTTTGCGTTTA+AGG + chr7.1:48638186-48638205 None:intergenic 40.0%
! AGTTGGTACTTCTTCTGCTA+TGG - chr7.1:48638493-48638512 MS.gene027320:CDS 40.0%
! GGTGGTGATGTTGATCAAAT+TGG - chr7.1:48638848-48638867 MS.gene027320:CDS 40.0%
!! AACAAGGAGGTAACGGATTA+GGG + chr7.1:48638366-48638385 None:intergenic 40.0%
!! ATTTGATCAGATGGTGGATG+CGG - chr7.1:48638754-48638773 MS.gene027320:CDS 40.0%
!! GAGAGTGATTTTGAGGGTTT+TGG + chr7.1:48638152-48638171 None:intergenic 40.0%
!! GCTATGCGTTTAGTTCTTAC+TGG - chr7.1:48639299-48639318 MS.gene027320:CDS 40.0%
!! GTGATTTTGAGGGTTTTGGT+AGG + chr7.1:48638148-48638167 None:intergenic 40.0%
!! TAAAGGGAAGATTTGGTGTG+TGG - chr7.1:48639144-48639163 MS.gene027320:CDS 40.0%
!!! TCAGCTTTTTCATCACAACC+AGG - chr7.1:48638095-48638114 MS.gene027320:intron 40.0%
AACTTGGGTTTCCGGATGTT+CGG - chr7.1:48638795-48638814 MS.gene027320:CDS 45.0%
ATTGTATCCGAACGGGTCTA+GGG - chr7.1:48639042-48639061 MS.gene027320:CDS 45.0%
ATTTGATCCATTGGTCGGAG+AGG + chr7.1:48638316-48638335 None:intergenic 45.0%
CGGATATTTATCGCGGAAAC+GGG - chr7.1:48638815-48638834 MS.gene027320:CDS 45.0%
CGTTTCCAACAAGGAGGTAA+CGG + chr7.1:48638373-48638392 None:intergenic 45.0%
CTAATCCGTTACCTCCTTGT+TGG - chr7.1:48638365-48638384 MS.gene027320:CDS 45.0%
GAGAATATTAAACCGGGTCC+AGG - chr7.1:48638998-48639017 MS.gene027320:CDS 45.0%
GATGGAGAAACTTGGGTTTC+CGG - chr7.1:48638787-48638806 MS.gene027320:CDS 45.0%
GCATGCCAAAAAACCGAATC+GGG + chr7.1:48639277-48639296 None:intergenic 45.0%
GTATAAACCAAACCCGAACC+CGG + chr7.1:48638728-48638747 None:intergenic 45.0%
GTTTGATTCTACGCATCGCA+GGG + chr7.1:48638439-48638458 None:intergenic 45.0%
TATGGCTCATTATTCTCCGG+TGG + chr7.1:48639124-48639143 None:intergenic 45.0%
TATTGTATCCGAACGGGTCT+AGG - chr7.1:48639041-48639060 MS.gene027320:CDS 45.0%
TATTTATCGCGGAAACGGGT+TGG - chr7.1:48638819-48638838 MS.gene027320:CDS 45.0%
TCACAACCAGGAATCTGCTA+CGG - chr7.1:48638107-48638126 MS.gene027320:intron 45.0%
TCATAAACCCTAGACCCGTT+CGG + chr7.1:48639052-48639071 None:intergenic 45.0%
TCGGAGCTCCAAGGAAAAAA+CGG + chr7.1:48638644-48638663 None:intergenic 45.0%
TGTTTGATTCTACGCATCGC+AGG + chr7.1:48638440-48638459 None:intergenic 45.0%
TTACGAAACGCAGCGTTTGA+AGG + chr7.1:48638542-48638561 None:intergenic 45.0%
TTTGATCCATTGGTCGGAGA+GGG + chr7.1:48638315-48638334 None:intergenic 45.0%
! GCTTGCTACTCAAACTGCAA+AGG - chr7.1:48639363-48639382 MS.gene027320:CDS 45.0%
!! AGGTAACGGATTAGGGTTTG+TGG + chr7.1:48638359-48638378 None:intergenic 45.0%
!! CAACAAGGAGGTAACGGATT+AGG + chr7.1:48638367-48638386 None:intergenic 45.0%
!! GGTAACGGATTAGGGTTTGT+GGG + chr7.1:48638358-48638377 None:intergenic 45.0%
!!! CAGGTACCGAACGACATTTT+GGG - chr7.1:48639017-48639036 MS.gene027320:CDS 45.0%
!!! GGATGCGGTTTATTTTGCGA+TGG - chr7.1:48638769-48638788 MS.gene027320:CDS 45.0%
AAAACCGGTTGTTGGGACAC+CGG - chr7.1:48638928-48638947 MS.gene027320:CDS 50.0%
ACTTGTGATCCGGTTCAACC+CGG - chr7.1:48639235-48639254 MS.gene027320:CDS 50.0%
AGAATTGAACCCGGTCTAGC+CGG + chr7.1:48638950-48638969 None:intergenic 50.0%
AGTTGACCGTAGCAGATTCC+TGG + chr7.1:48638116-48638135 None:intergenic 50.0%
ATTGACGTATGCTTGCTCGC+AGG - chr7.1:48639204-48639223 MS.gene027320:CDS 50.0%
CCAAAATGTCGTTCGGTACC+TGG + chr7.1:48639019-48639038 None:intergenic 50.0%
GAGTAATGTGACGGCACTAG+GGG - chr7.1:48639177-48639196 MS.gene027320:CDS 50.0%
GGAATCTGCTACGGTCAACT+AGG - chr7.1:48638116-48638135 MS.gene027320:intron 50.0%
GGAGTAATGTGACGGCACTA+GGG - chr7.1:48639176-48639195 MS.gene027320:CDS 50.0%
GTTGAACCGGATCACAAGTC+CGG + chr7.1:48639234-48639253 None:intergenic 50.0%
TACGGTTAAGGATCCGGGTT+CGG - chr7.1:48638712-48638731 MS.gene027320:CDS 50.0%
TGATCTATCGGGGAAGACAC+CGG - chr7.1:48639075-48639094 MS.gene027320:CDS 50.0%
TTGACGTATGCTTGCTCGCA+GGG - chr7.1:48639205-48639224 MS.gene027320:CDS 50.0%
! AGTGCTGGATACTCTGACTC+CGG + chr7.1:48639097-48639116 None:intergenic 50.0%
! TTTTCCTTGGAGCTCCGATC+CGG - chr7.1:48638646-48638665 MS.gene027320:CDS 50.0%
!! AGGGAAGATTTGGTGTGTGG+CGG - chr7.1:48639147-48639166 MS.gene027320:CDS 50.0%
!!! CACTTTTTCCCGGGTTGAAC+CGG + chr7.1:48639247-48639266 None:intergenic 50.0%
!!! CCAGGTACCGAACGACATTT+TGG - chr7.1:48639016-48639035 MS.gene027320:CDS 50.0%
ACCAAACCCTCTCCGACCAA+TGG - chr7.1:48638306-48638325 MS.gene027320:intron 55.0%
ACGGTTAAGGATCCGGGTTC+GGG - chr7.1:48638713-48638732 MS.gene027320:CDS 55.0%
AGATGAGGCCACGTGGAGTT+TGG + chr7.1:48638413-48638432 None:intergenic 55.0%
CATCCACACCAAACTCCACG+TGG - chr7.1:48638402-48638421 MS.gene027320:CDS 55.0%
CGAAACGCAGCGTTTGAAGG+TGG + chr7.1:48638539-48638558 None:intergenic 55.0%
CTTGTGATCCGGTTCAACCC+GGG - chr7.1:48639236-48639255 MS.gene027320:CDS 55.0%
GGCTCATTATTCTCCGGTGG+AGG + chr7.1:48639121-48639140 None:intergenic 55.0%
GGGAGTAATGTGACGGCACT+AGG - chr7.1:48639175-48639194 MS.gene027320:CDS 55.0%
GGTGCGTGGGAGTAATGTGA+CGG - chr7.1:48639168-48639187 MS.gene027320:CDS 55.0%
GTATCCAGCACTTCCTCCAC+CGG - chr7.1:48639105-48639124 MS.gene027320:CDS 55.0%
TAATGTGACGGCACTAGGGG+AGG - chr7.1:48639180-48639199 MS.gene027320:CDS 55.0%
TCCATTGGTCGGAGAGGGTT+TGG + chr7.1:48638310-48638329 None:intergenic 55.0%
TGACGTATGCTTGCTCGCAG+GGG - chr7.1:48639206-48639225 MS.gene027320:CDS 55.0%
TTAACCGGATCGGAGCTCCA+AGG + chr7.1:48638653-48638672 None:intergenic 55.0%
! TAAGGATCCGGGTTCGGGTT+TGG - chr7.1:48638718-48638737 MS.gene027320:CDS 55.0%
!! GAAACGGGTTGGCCTAATGG+TGG - chr7.1:48638830-48638849 MS.gene027320:CDS 55.0%
ATGCTTGCTCGCAGGGGAAC+CGG - chr7.1:48639212-48639231 MS.gene027320:CDS 60.0%
CTAGCCGGTGTCCCAACAAC+CGG + chr7.1:48638935-48638954 None:intergenic 60.0%
GGGGAACCGGACTTGTGATC+CGG - chr7.1:48639225-48639244 MS.gene027320:CDS 60.0%
TGTCGTTCGGTACCTGGACC+CGG + chr7.1:48639013-48639032 None:intergenic 60.0%
! AGGCCACGTGGAGTTTGGTG+TGG + chr7.1:48638408-48638427 None:intergenic 60.0%
! TGTTGGGACACCGGCTAGAC+CGG - chr7.1:48638937-48638956 MS.gene027320:CDS 60.0%
! TTCTCCGGTGGAGGAAGTGC+TGG + chr7.1:48639112-48639131 None:intergenic 60.0%
! TTTGGTGTGTGGCGGTGCGT+GGG - chr7.1:48639155-48639174 MS.gene027320:CDS 60.0%
!! ATTTGGTGTGTGGCGGTGCG+TGG - chr7.1:48639154-48639173 MS.gene027320:CDS 60.0%
!! GCGGAAACGGGTTGGCCTAA+TGG - chr7.1:48638827-48638846 MS.gene027320:CDS 60.0%
AGGGACGAGATGAGGCCACG+TGG + chr7.1:48638420-48638439 None:intergenic 65.0%
CGCATCGCAGGGACGAGATG+AGG + chr7.1:48638428-48638447 None:intergenic 65.0%
! GTTGGGACACCGGCTAGACC+GGG - chr7.1:48638938-48638957 MS.gene027320:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 48637905 48639833 48637905 ID=MS.gene027320
chr7.1 mRNA 48637905 48639833 48637905 ID=MS.gene027320.t1;Parent=MS.gene027320
chr7.1 exon 48639782 48639833 48639782 ID=MS.gene027320.t1.exon1;Parent=MS.gene027320.t1
chr7.1 CDS 48639782 48639833 48639782 ID=cds.MS.gene027320.t1;Parent=MS.gene027320.t1
chr7.1 exon 48638347 48639648 48638347 ID=MS.gene027320.t1.exon2;Parent=MS.gene027320.t1
chr7.1 CDS 48638347 48639648 48638347 ID=cds.MS.gene027320.t1;Parent=MS.gene027320.t1
chr7.1 exon 48637905 48637942 48637905 ID=MS.gene027320.t1.exon3;Parent=MS.gene027320.t1
chr7.1 CDS 48637905 48637942 48637905 ID=cds.MS.gene027320.t1;Parent=MS.gene027320.t1
Gene Sequence

>MS.gene027320

ATGGCTTTGTTTCTCCTCTTTCTCTTCTCCATTCTACTCAACAACATTTCAAGTAAGTAACAAAACACTTCTTAGTTTCTTCAATCTCATCTCTCTGGGTATCTCTGCTCGCAACTGCAGAGACTAATCTCTATTGTATTGATTTCATTGATTAACTTAACTTTTCTTATTAATATACTTCACAGGTAGCTCAGCTTTTTCATCACAACCAGGAATCTGCTACGGTCAACTAGGAAACAACCTACCAAAACCCTCAAAATCACTCTCCTTAATCAAATCCTTAAACGCAAAGCGCATCAAAATCTATGACACAAACCCACAAATCCTAACAACCTTAAAAAACACAAACATTCAAATCTCAATCATGCTCCCAAACGAACTCATCACAAACATCTCATCAAACCAAACCCTCTCCGACCAATGGATCAAATCCAACGTTCTACCTTATTACCCACAAACCCTAATCCGTTACCTCCTTGTTGGAAACGAAATCATCTCATCCACACCAAACTCCACGTGGCCTCATCTCGTCCCTGCGATGCGTAGAATCAAACACTCTTTGAAAAAATTCAGAATCAAAAGAATCAAAGTTGGTACTTCTTCTGCTATGGATGTTTTAGAAACTTCTTTTCCACCTTCAAACGCTGCGTTTCGTAAAGATATAGCGGTTCAAGTTATTAAACCGATGCTTAGGTTTTTAAACCGGACTAAATCTTTTTTCTTTTTAGATGTTTATCCGTTTTTTCCTTGGAGCTCCGATCCGGTTAATGTTAATTTGGATTATGCTTTGTTTAGAGAGACTAATGTTACGGTTAAGGATCCGGGTTCGGGTTTGGTTTATACGAATTTATTTGATCAGATGGTGGATGCGGTTTATTTTGCGATGGAGAAACTTGGGTTTCCGGATGTTCGGATATTTATCGCGGAAACGGGTTGGCCTAATGGTGGTGATGTTGATCAAATTGGTGCTAATGTTTTTAATGCTGCTACTTATAATAGAAACTTTGTTAAAAAAGCAATGAAAAAACCGGTTGTTGGGACACCGGCTAGACCGGGTTCAATTCTTCCGAGTTTTTTATTTGCTTTGTTTAATGAGAATATTAAACCGGGTCCAGGTACCGAACGACATTTTGGGTTATTGTATCCGAACGGGTCTAGGGTTTATGACATTGATCTATCGGGGAAGACACCGGAGTCAGAGTATCCAGCACTTCCTCCACCGGAGAATAATGAGCCATATAAAGGGAAGATTTGGTGTGTGGCGGTGCGTGGGAGTAATGTGACGGCACTAGGGGAGGCATTGACGTATGCTTGCTCGCAGGGGAACCGGACTTGTGATCCGGTTCAACCCGGGAAAAAGTGTTTTAAACCCGATTCGGTTTTTTGGCATGCTAGCTATGCGTTTAGTTCTTACTGGGCTCAGTTTAAGAAGATTGGAGGAACTTGTTACTTTAATGGGCTTGCTACTCAAACTGCAAAGGATCCAAGTAAGTACATTTTTTTATTTTAATACTAAACAATTAGTCTAGCTTAACCCTCTAATTGTGAGTTATGATTATATTTAACTATAGAGTTGCATTTCATCCAACAAAAAATTGTTGGATGATTTTCTTAGTATTGTTCCCACAATGGATGTTAAATGTCATGTTGACTAAAGATTGCAAGATTTTGTCATCAATTGTTTTTCAAACCAAATGTATAACCATTAAATTGAAGTACTTGATTTGTTAACAAGGACATGATCCAGTTAAATTAAACTTAACTACTTTAATTTAATAAATGAAAATGTAATCTTTGTTGAGTACGAAATTATTTTCTTGTTTATGTTTTCCTTGTTATATTTGTCCATCACTTAACATTTTTATTTTATCTTTTTTTTGAACATGTGTAGGTTATGGATCTTGCAAGTTTCCAAGTGTGACACTTTGA
Protein sequence

>MS.gene027320.t1

MALFLLFLFSILLNNISSSSAFSSQPGICYGQLGNNLPKPSKSLSLIKSLNAKRIKIYDTNPQILTTLKNTNIQISIMLPNELITNISSNQTLSDQWIKSNVLPYYPQTLIRYLLVGNEIISSTPNSTWPHLVPAMRRIKHSLKKFRIKRIKVGTSSAMDVLETSFPPSNAAFRKDIAVQVIKPMLRFLNRTKSFFFLDVYPFFPWSSDPVNVNLDYALFRETNVTVKDPGSGLVYTNLFDQMVDAVYFAMEKLGFPDVRIFIAETGWPNGGDVDQIGANVFNAATYNRNFVKKAMKKPVVGTPARPGSILPSFLFALFNENIKPGPGTERHFGLLYPNGSRVYDIDLSGKTPESEYPALPPPENNEPYKGKIWCVAVRGSNVTALGEALTYACSQGNRTCDPVQPGKKCFKPDSVFWHASYAFSSYWAQFKKIGGTCYFNGLATQTAKDPSYGSCKFPSVTL