AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034742

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034742.t1 MTR_1g056640 97.297 481 13 0 1 481 14 494 0.0 965
MS.gene034742.t1 MTR_5g085580 62.851 463 159 2 20 481 20 470 0.0 601
MS.gene034742.t1 MTR_3g080410 68.293 328 104 0 20 347 21 348 1.06e-161 462
MS.gene034742.t1 MTR_7g053500 42.208 462 231 8 26 479 27 460 1.92e-124 371
MS.gene034742.t1 MTR_8g012400 40.377 478 252 8 8 479 10 460 6.78e-123 367
MS.gene034742.t1 MTR_1g031900 39.293 481 255 3 4 481 3 449 2.55e-119 359
MS.gene034742.t1 MTR_1g031900 39.413 477 252 3 4 477 3 445 3.43e-119 358
MS.gene034742.t1 MTR_4g069940 38.994 477 263 6 9 480 9 462 2.21e-118 355
MS.gene034742.t1 MTR_6g088885 38.608 474 261 5 6 475 5 452 1.08e-117 355
MS.gene034742.t1 MTR_3g065460 39.540 478 248 4 8 478 3 446 3.11e-117 353
MS.gene034742.t1 MTR_4g088155 38.285 478 264 7 9 479 6 459 1.88e-114 345
MS.gene034742.t1 MTR_3g116510 38.413 479 259 7 9 480 8 457 1.06e-113 343
MS.gene034742.t1 MTR_5g078200 38.413 479 257 6 4 478 1 445 5.18e-112 345
MS.gene034742.t1 MTR_3g083580 37.637 457 245 5 25 477 26 446 6.26e-112 340
MS.gene034742.t1 MTR_8g085720 38.293 457 246 4 25 478 26 449 1.69e-111 339
MS.gene034742.t1 MTR_4g132280 37.500 488 256 7 6 478 14 467 2.85e-110 336
MS.gene034742.t1 MTR_1g022160 37.740 469 264 7 25 480 24 477 5.06e-108 329
MS.gene034742.t1 MTR_5g078200 39.686 446 232 5 36 478 1 412 5.13e-108 333
MS.gene034742.t1 MTR_1g022160 37.768 466 262 7 25 477 24 474 7.38e-107 327
MS.gene034742.t1 MTR_8g102340 38.445 476 229 6 2 475 3 416 1.46e-106 325
MS.gene034742.t1 MTR_1g022160 38.043 460 257 7 25 471 24 468 2.01e-106 325
MS.gene034742.t1 MTR_7g053500 41.951 410 202 8 78 479 2 383 8.55e-106 320
MS.gene034742.t1 MTR_4g083500 40.733 464 256 10 19 478 38 486 1.85e-105 324
MS.gene034742.t1 MTR_1g077990 49.231 325 161 4 19 342 25 346 1.18e-101 310
MS.gene034742.t1 MTR_7g026340 38.793 464 249 10 16 475 14 446 1.31e-101 311
MS.gene034742.t1 MTR_8g012400 39.655 406 214 7 78 479 2 380 1.09e-99 305
MS.gene034742.t1 MTR_4g084480 42.228 386 215 5 4 385 1 382 1.69e-99 304
MS.gene034742.t1 MTR_4g084480 43.081 383 206 6 1 375 1 379 2.94e-98 301
MS.gene034742.t1 MTR_4g084480 44.628 363 189 6 1 355 1 359 6.07e-98 300
MS.gene034742.t1 MTR_4g010200 44.092 347 185 3 7 345 8 353 1.98e-96 296
MS.gene034742.t1 MTR_4g052970 47.059 323 166 4 24 344 28 347 1.13e-95 294
MS.gene034742.t1 MTR_2g086530 42.075 347 194 5 1 344 3 345 4.42e-91 283
MS.gene034742.t1 MTR_2g086530 43.750 320 175 4 26 344 9 324 4.43e-90 279
MS.gene034742.t1 MTR_2g019345 43.413 334 185 4 10 342 9 339 1.70e-89 279
MS.gene034742.t1 MTR_1g007810 42.857 329 181 4 15 341 6 329 5.36e-88 274
MS.gene034742.t1 MTR_4g114850 43.087 311 175 2 23 332 24 333 1.63e-86 270
MS.gene034742.t1 MTR_4g114850 43.087 311 175 2 23 332 24 333 1.81e-86 270
MS.gene034742.t1 MTR_4g114850 43.087 311 175 2 23 332 24 333 5.07e-86 270
MS.gene034742.t1 MTR_3g116510 38.636 352 185 4 131 480 1 323 1.34e-82 258
MS.gene034742.t1 MTR_1g022160 40.557 323 189 3 25 345 24 345 2.83e-81 258
MS.gene034742.t1 MTR_1g052430 40.549 328 182 7 18 342 25 342 1.60e-72 235
MS.gene034742.t1 MTR_4g076255 40.187 321 178 7 22 342 22 328 1.24e-71 230
MS.gene034742.t1 MTR_1g053320 32.365 482 278 16 7 478 14 457 1.12e-70 233
MS.gene034742.t1 MTR_4g076500 39.873 316 177 5 21 334 74 378 7.53e-70 228
MS.gene034742.t1 MTR_2g034480 37.982 337 194 8 8 340 10 335 2.25e-69 226
MS.gene034742.t1 MTR_4g076490 39.688 320 178 7 24 342 96 401 4.80e-69 226
MS.gene034742.t1 MTR_4g076470 38.462 338 191 8 6 340 1 324 5.59e-69 223
MS.gene034742.t1 MTR_4g076440 38.710 341 190 9 6 342 1 326 1.52e-67 219
MS.gene034742.t1 MTR_2g034470 37.771 323 186 8 22 340 27 338 7.41e-67 219
MS.gene034742.t1 MTR_4g112025 31.481 486 286 16 4 479 10 458 1.49e-66 223
MS.gene034742.t1 MTR_4g076570 36.471 340 204 7 18 354 15 345 1.50e-66 218
MS.gene034742.t1 MTR_4g076430 38.123 341 192 9 6 342 1 326 2.32e-65 214
MS.gene034742.t1 MTR_7g081350 36.036 333 204 6 8 340 10 333 1.19e-64 213
MS.gene034742.t1 MTR_2g034440 37.695 321 185 9 22 338 19 328 1.52e-64 212
MS.gene034742.t1 MTR_2g034470 37.700 313 180 8 32 340 2 303 5.54e-64 210
MS.gene034742.t1 MTR_2g027560 32.903 465 266 14 24 480 27 453 2.01e-63 214
MS.gene034742.t1 MTR_1g010120 30.992 484 281 17 6 477 6 448 5.04e-62 209
MS.gene034742.t1 MTR_3g031770 31.770 469 270 16 17 478 21 446 9.86e-60 204
MS.gene034742.t1 MTR_7g081370 35.277 343 197 8 1 340 1 321 1.02e-59 199
MS.gene034742.t1 MTR_8g092070 29.004 462 283 15 25 478 34 458 4.01e-58 202
MS.gene034742.t1 MTR_3g108600 29.707 478 269 16 9 477 16 435 1.78e-56 195
MS.gene034742.t1 MTR_4g124440 29.193 483 287 17 9 477 10 451 4.27e-56 194
MS.gene034742.t1 MTR_3g095050 30.519 462 274 18 25 478 34 456 5.82e-56 194
MS.gene034742.t1 MTR_7g085390 30.108 465 273 19 25 477 26 450 3.05e-53 186
MS.gene034742.t1 MTR_6g032820 30.684 453 257 19 25 461 26 437 5.60e-51 179
MS.gene034742.t1 MTR_5g081720 32.459 305 194 7 41 341 53 349 3.05e-43 157
MS.gene034742.t1 MTR_4g134280 31.915 376 209 16 113 480 3 339 3.47e-42 154
MS.gene034742.t1 MTR_5g015720 27.635 427 266 10 54 477 28 414 2.40e-38 144
MS.gene034742.t1 MTR_8g089400 50.476 105 47 1 376 475 15 119 1.83e-27 108
MS.gene034742.t1 MTR_8g085440 48.454 97 47 2 382 478 23 116 3.14e-27 105
MS.gene034742.t1 MTR_8g085390 52.273 88 41 1 392 479 29 115 5.56e-27 107
MS.gene034742.t1 MTR_8g089400 50.476 105 47 1 376 475 35 139 6.42e-27 107
MS.gene034742.t1 MTR_1g084820 60.000 85 32 2 389 473 416 498 1.04e-25 110
MS.gene034742.t1 MTR_1g084820 60.000 85 32 2 389 473 416 498 1.34e-25 110
MS.gene034742.t1 MTR_7g111600 39.623 159 72 5 343 478 87 244 8.70e-25 103
MS.gene034742.t1 MTR_7g111600 39.623 159 72 5 343 478 87 244 1.49e-24 103
MS.gene034742.t1 MTR_3g048280 44.628 121 55 3 350 470 80 188 1.60e-24 101
MS.gene034742.t1 MTR_7g111600 39.623 159 72 5 343 478 87 244 2.02e-24 103
MS.gene034742.t1 MTR_8g085420 47.312 93 46 2 382 474 23 112 2.50e-24 98.6
MS.gene034742.t1 MTR_8g085400 53.933 89 36 3 382 470 23 106 3.34e-24 97.4
MS.gene034742.t1 MTR_5g091650 48.889 90 45 1 390 479 105 193 7.77e-24 99.0
MS.gene034742.t1 MTR_5g091650 48.889 90 45 1 390 479 105 193 1.04e-23 100
MS.gene034742.t1 MTR_5g097420 48.276 87 45 0 391 477 28 114 4.12e-23 94.7
MS.gene034742.t1 MTR_3g082080 55.128 78 34 1 393 470 157 233 2.38e-22 96.3
MS.gene034742.t1 MTR_4g133735 46.067 89 48 0 389 477 24 112 5.93e-22 91.3
MS.gene034742.t1 MTR_4g079530 45.161 93 51 0 389 481 33 125 1.02e-21 90.9
MS.gene034742.t1 MTR_4g079530 45.652 92 50 0 389 480 33 124 3.81e-21 90.9
MS.gene034742.t1 MTR_1g116870 47.059 85 44 1 393 477 276 359 4.46e-21 95.1
MS.gene034742.t1 MTR_2g049670 52.941 85 38 2 393 477 158 240 8.04e-21 93.6
MS.gene034742.t1 MTR_4g133730 44.706 85 47 0 393 477 28 112 8.43e-21 88.2
MS.gene034742.t1 MTR_4g109490 51.765 85 39 2 393 477 24 106 5.22e-20 89.0
MS.gene034742.t1 MTR_8g088120 53.247 77 35 1 401 477 56 131 1.22e-19 88.2
MS.gene034742.t1 MTR_4g083070 45.455 88 46 2 383 470 11 96 6.44e-18 82.4
MS.gene034742.t1 MTR_5g044530 46.053 76 40 1 388 463 17 91 1.15e-16 80.1
MS.gene034742.t1 MTR_4g036775 40.777 103 55 3 256 358 94 190 2.96e-15 75.1
MS.gene034742.t1 MTR_4g036775 40.000 80 48 0 8 87 5 84 2.78e-12 66.6
MS.gene034742.t1 MTR_4g036680 40.777 103 55 3 256 358 94 190 4.76e-15 74.7
MS.gene034742.t1 MTR_4g036680 43.939 66 37 0 22 87 19 84 5.52e-11 62.8
MS.gene034742.t1 MTR_2g072500 40.000 90 52 1 388 477 3 90 4.31e-14 68.2
MS.gene034742.t1 MTR_8g471000 35.714 84 53 1 130 213 5 87 2.75e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034742.t1 AT5G55180 71.429 462 109 3 20 481 22 460 0.0 670
MS.gene034742.t1 AT5G55180 71.397 451 106 3 20 470 22 449 0.0 649
MS.gene034742.t1 AT4G26830 66.318 478 134 5 5 481 4 455 0.0 640
MS.gene034742.t1 AT4G26830 67.171 463 126 4 19 481 23 459 0.0 637
MS.gene034742.t1 AT2G05790 64.935 462 151 4 21 481 21 472 0.0 621
MS.gene034742.t1 AT5G56590 39.783 460 248 4 23 480 24 456 1.32e-121 365
MS.gene034742.t1 AT3G07320 41.558 462 240 6 22 479 22 457 1.19e-119 358
MS.gene034742.t1 AT4G29360 40.254 472 270 5 9 475 9 473 2.12e-119 360
MS.gene034742.t1 AT5G24318 40.377 478 251 10 4 477 8 455 9.10e-119 356
MS.gene034742.t1 AT4G29360 40.169 473 269 5 10 475 18 483 2.18e-118 358
MS.gene034742.t1 AT2G16230 39.560 455 245 6 25 478 25 450 9.71e-117 352
MS.gene034742.t1 AT4G34480 40.592 473 246 7 8 478 9 448 4.83e-115 348
MS.gene034742.t1 AT5G24318 40.340 471 247 10 4 470 8 448 4.99e-115 346
MS.gene034742.t1 AT1G66250 39.827 462 240 4 19 477 26 452 7.43e-115 348
MS.gene034742.t1 AT2G01630 38.731 457 243 4 25 478 23 445 1.03e-113 345
MS.gene034742.t1 AT2G01630 38.530 449 239 4 25 470 23 437 5.66e-111 335
MS.gene034742.t1 AT4G14080 37.093 461 263 5 22 479 39 475 6.95e-110 334
MS.gene034742.t1 AT3G13560 37.797 463 250 4 18 477 19 446 2.59e-109 333
MS.gene034742.t1 AT3G13560 37.797 463 250 4 18 477 19 446 2.59e-109 333
MS.gene034742.t1 AT3G13560 37.797 463 250 4 18 477 19 446 2.59e-109 333
MS.gene034742.t1 AT3G13560 37.797 463 250 4 18 477 19 446 2.59e-109 333
MS.gene034742.t1 AT3G13560 37.797 463 250 4 18 477 19 446 2.59e-109 333
MS.gene034742.t1 AT1G11820 37.418 457 249 3 25 478 44 466 2.48e-108 331
MS.gene034742.t1 AT3G23770 37.500 464 260 5 22 479 34 473 8.16e-105 321
MS.gene034742.t1 AT1G11820 37.556 450 242 4 25 470 44 458 2.61e-104 320
MS.gene034742.t1 AT1G30080 46.726 336 176 3 8 342 19 352 1.51e-99 304
MS.gene034742.t1 AT1G30080 46.726 336 176 3 8 342 19 352 2.58e-99 305
MS.gene034742.t1 AT2G27500 45.455 319 172 2 25 342 29 346 6.45e-98 300
MS.gene034742.t1 AT2G27500 45.455 319 172 2 25 342 29 346 1.57e-97 299
MS.gene034742.t1 AT1G32860 46.130 323 167 5 24 342 28 347 1.93e-96 298
MS.gene034742.t1 AT4G18340 44.789 355 189 5 10 359 16 368 1.24e-95 294
MS.gene034742.t1 AT4G18340 44.789 355 189 5 10 359 16 368 2.25e-95 294
MS.gene034742.t1 AT5G42100 46.407 334 173 5 13 342 15 346 3.63e-94 291
MS.gene034742.t1 AT5G42100 46.407 334 173 5 13 342 15 346 4.48e-94 291
MS.gene034742.t1 AT5G24318 43.732 343 183 6 4 342 8 344 1.90e-91 283
MS.gene034742.t1 AT2G01630 37.656 401 213 4 25 422 23 389 2.27e-90 281
MS.gene034742.t1 AT5G42720 42.857 378 206 8 6 377 6 379 4.51e-90 281
MS.gene034742.t1 AT4G34480 42.899 345 193 3 8 350 9 351 4.15e-89 276
MS.gene034742.t1 AT3G55430 35.032 471 263 14 11 477 18 449 7.72e-89 279
MS.gene034742.t1 AT2G26600 43.614 321 179 2 23 342 32 351 2.29e-87 273
MS.gene034742.t1 AT3G15800 42.197 346 197 3 23 366 41 385 2.80e-87 273
MS.gene034742.t1 AT5G24318 40.116 344 178 5 134 477 1 316 2.72e-86 268
MS.gene034742.t1 AT4G34480 40.761 368 183 7 113 478 3 337 4.46e-83 262
MS.gene034742.t1 AT2G27500 44.776 268 146 2 76 342 2 268 9.70e-78 246
MS.gene034742.t1 AT2G39640 33.333 489 269 15 1 478 1 443 4.64e-76 248
MS.gene034742.t1 AT2G39640 33.696 92 60 1 387 478 454 544 1.92e-14 76.3
MS.gene034742.t1 AT4G16260 38.776 343 201 6 6 348 5 338 4.95e-74 237
MS.gene034742.t1 AT3G57270 40.062 322 184 6 22 342 24 337 2.35e-73 235
MS.gene034742.t1 AT1G11820 38.245 319 193 2 25 340 44 361 8.99e-73 235
MS.gene034742.t1 AT3G46570 40.625 352 195 10 8 354 10 352 5.38e-72 232
MS.gene034742.t1 AT4G16260 40.506 316 177 7 32 347 2 306 1.08e-69 225
MS.gene034742.t1 AT3G61810 36.826 334 196 4 16 342 44 369 4.09e-68 223
MS.gene034742.t1 AT5G20390 41.824 318 175 7 22 338 30 338 7.08e-68 221
MS.gene034742.t1 AT5G20330 40.588 340 186 8 6 338 9 339 7.50e-67 218
MS.gene034742.t1 AT3G24330 30.309 485 289 15 6 479 20 466 7.71e-65 218
MS.gene034742.t1 AT2G26600 42.857 259 144 3 85 342 2 257 1.22e-63 208
MS.gene034742.t1 AT5G20340 39.628 323 184 8 22 342 40 353 2.25e-63 209
MS.gene034742.t1 AT1G33220 40.256 313 177 7 22 332 31 335 1.20e-62 207
MS.gene034742.t1 AT4G17180 32.983 476 267 16 13 480 12 443 2.96e-62 210
MS.gene034742.t1 AT4G31140 30.435 483 286 16 5 477 6 448 6.91e-61 207
MS.gene034742.t1 AT1G77790 36.842 342 205 8 4 342 8 341 1.09e-60 202
MS.gene034742.t1 AT3G57260 36.391 338 199 8 8 342 12 336 1.84e-60 201
MS.gene034742.t1 AT3G57260 36.391 338 199 8 8 342 28 352 2.79e-60 201
MS.gene034742.t1 AT1G77780 36.499 337 199 9 10 342 7 332 1.13e-59 200
MS.gene034742.t1 AT5G20870 32.064 499 264 23 4 478 13 460 2.17e-59 203
MS.gene034742.t1 AT3G04010 29.522 481 289 16 9 478 17 458 2.09e-58 201
MS.gene034742.t1 AT3G57240 36.957 322 187 9 22 342 32 338 3.34e-58 196
MS.gene034742.t1 AT2G19440 30.901 466 269 18 25 478 21 445 1.67e-57 197
MS.gene034742.t1 AT2G19440 30.901 466 269 18 25 478 21 445 1.67e-57 197
MS.gene034742.t1 AT5G58090 30.277 469 276 16 21 478 18 446 2.19e-57 197
MS.gene034742.t1 AT1G64760 31.049 467 267 18 25 478 25 449 3.17e-57 197
MS.gene034742.t1 AT1G64760 31.049 467 267 18 25 478 25 449 3.17e-57 197
MS.gene034742.t1 AT5G18220 29.958 474 277 17 19 478 24 456 3.29e-57 197
MS.gene034742.t1 AT5G64790 29.854 479 287 18 11 479 14 453 7.31e-57 196
MS.gene034742.t1 AT5G58480 28.753 473 285 14 13 477 16 444 2.95e-49 176
MS.gene034742.t1 AT5G20560 34.821 336 200 10 6 334 13 336 7.25e-47 166
MS.gene034742.t1 AT3G55780 29.766 299 203 4 38 333 48 342 1.14e-43 158
MS.gene034742.t1 AT5G67460 44.628 121 67 0 357 477 257 377 1.73e-28 116
MS.gene034742.t1 AT2G30933 55.056 89 39 1 391 479 80 167 1.47e-26 107
MS.gene034742.t1 AT5G67460 43.089 123 69 1 357 478 257 379 1.68e-26 110
MS.gene034742.t1 AT1G29380 57.647 85 35 1 393 477 148 231 1.42e-24 104
MS.gene034742.t1 AT1G29380 57.647 85 35 1 393 477 148 231 1.58e-24 102
MS.gene034742.t1 AT1G18650 46.875 96 50 1 383 478 11 105 2.41e-24 98.6
MS.gene034742.t1 AT1G18650 46.875 96 50 1 383 478 11 105 3.01e-24 100
MS.gene034742.t1 AT4G13600 50.000 86 42 1 393 478 61 145 3.36e-24 101
MS.gene034742.t1 AT1G09460 54.348 92 39 2 389 480 133 221 1.10e-23 102
MS.gene034742.t1 AT2G30933 56.250 80 34 1 391 470 80 158 3.26e-23 96.3
MS.gene034742.t1 AT2G30933 56.250 80 34 1 391 470 80 158 3.26e-23 96.3
MS.gene034742.t1 AT2G04910 44.706 85 47 0 393 477 15 99 1.14e-22 92.8
MS.gene034742.t1 AT4G05430 45.361 97 51 1 381 477 13 107 1.32e-22 94.0
MS.gene034742.t1 AT4G05430 45.361 97 51 1 381 477 38 132 1.38e-22 94.7
MS.gene034742.t1 AT1G29380 58.974 78 31 1 393 470 148 224 1.90e-22 96.3
MS.gene034742.t1 AT1G29380 58.974 78 31 1 393 470 148 224 1.90e-22 96.3
MS.gene034742.t1 AT1G66870 44.828 87 48 0 389 475 22 108 1.97e-22 92.4
MS.gene034742.t1 AT5G35740 45.652 92 49 1 387 477 24 115 2.17e-22 92.8
MS.gene034742.t1 AT1G66870 45.349 86 47 0 390 475 50 135 2.94e-22 92.8
MS.gene034742.t1 AT1G79480 48.235 85 43 1 393 477 311 394 1.27e-21 97.1
MS.gene034742.t1 AT1G79480 48.235 85 43 1 393 477 310 393 1.34e-21 97.1
MS.gene034742.t1 AT2G04910 46.154 78 42 0 393 470 15 92 2.58e-21 89.7
MS.gene034742.t1 AT5G61130 43.678 87 48 1 392 478 20 105 3.96e-20 89.0
MS.gene034742.t1 AT1G66855 38.636 88 54 0 390 477 23 110 4.70e-20 85.9
MS.gene034742.t1 AT4G05430 42.000 100 56 1 364 463 21 118 1.29e-19 85.1
MS.gene034742.t1 AT5G63250 46.237 93 47 3 387 477 37 128 1.72e-19 85.1
MS.gene034742.t1 AT5G08000 44.944 89 48 1 390 478 37 124 2.34e-19 87.0
MS.gene034742.t1 AT5G63225 46.067 89 47 1 391 479 23 110 3.20e-19 83.6
MS.gene034742.t1 AT3G58100 40.000 100 56 1 380 479 32 127 4.03e-19 85.5
MS.gene034742.t1 AT3G58100 40.000 100 56 1 380 479 108 203 7.32e-19 86.7
MS.gene034742.t1 AT5G53600 41.379 87 49 1 391 477 27 111 7.64e-19 82.4
MS.gene034742.t1 AT4G09462 40.230 87 51 1 391 477 27 112 1.68e-18 81.6
MS.gene034742.t1 AT1G69295 52.564 78 35 2 393 470 21 96 2.07e-18 84.3
MS.gene034742.t1 AT5G53610 43.529 85 46 1 393 477 28 110 2.66e-18 80.9
MS.gene034742.t1 AT1G66852 42.697 89 46 2 389 475 22 107 3.11e-18 80.5
MS.gene034742.t1 AT5G08000 44.828 87 47 1 392 478 20 105 3.20e-18 83.2
MS.gene034742.t1 AT1G69295 52.564 78 35 2 393 470 17 92 3.54e-18 83.6
MS.gene034742.t1 AT4G09465 38.202 89 54 1 391 479 29 116 1.54e-17 79.0
MS.gene034742.t1 AT4G09467 38.202 89 54 1 391 479 29 116 1.80e-17 78.6
MS.gene034742.t1 AT4G09464 38.202 89 54 1 391 479 29 116 1.80e-17 78.6
MS.gene034742.t1 AT1G26450 57.812 64 26 1 402 465 29 91 2.80e-17 80.5
MS.gene034742.t1 AT4G16165 34.831 89 58 0 389 477 22 110 4.60e-17 77.4
MS.gene034742.t1 AT4G09090 40.000 85 50 1 393 477 31 114 6.09e-17 77.0
MS.gene034742.t1 AT4G09466 37.079 89 55 1 391 479 29 116 1.58e-16 75.9
MS.gene034742.t1 AT5G63230 39.175 97 58 1 383 479 16 111 1.70e-16 75.9
MS.gene034742.t1 AT5G63240 36.559 93 56 2 387 477 35 126 2.78e-15 72.8
MS.gene034742.t1 AT2G43670 33.333 93 60 1 383 475 25 115 8.52e-14 68.6
MS.gene034742.t1 AT2G29735 37.234 94 55 3 386 477 25 116 1.06e-13 68.2
MS.gene034742.t1 AT2G03505 40.278 72 42 1 392 463 20 90 3.70e-13 66.6
MS.gene034742.t1 AT1G13830 40.541 74 43 1 390 463 32 104 4.53e-13 68.6
MS.gene034742.t1 AT2G03505 37.975 79 48 1 392 470 20 97 5.30e-13 67.4
MS.gene034742.t1 AT2G03505 37.975 79 48 1 392 470 20 97 5.30e-13 67.4
MS.gene034742.t1 AT2G03505 37.975 79 48 1 392 470 20 97 5.30e-13 67.4
MS.gene034742.t1 AT1G78520 33.000 100 65 1 378 477 17 114 1.16e-12 65.1
MS.gene034742.t1 AT1G13830 40.845 71 41 1 393 463 21 90 1.94e-12 66.6
MS.gene034742.t1 AT2G42930 38.462 78 46 2 393 470 40 115 3.45e-11 61.2

Find 121 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACCGGTTCTTATTTAA+TGG 0.191315 1.1:+44029490 MS.gene034742:CDS
AAGCATAGAGTGAGAGAAAA+AGG 0.269205 1.1:-44028795 None:intergenic
AGAGGGTCCTTAGGTCTTAA+AGG 0.304307 1.1:-44029821 None:intergenic
AACCCTGGTGTTGTTGATTC+TGG 0.308011 1.1:+44029587 MS.gene034742:CDS
AAAAGCTCTACTACCTTTGA+TGG 0.322339 1.1:-44029038 None:intergenic
GCATGTGCCTCCAAAGTATT+AGG 0.332570 1.1:-44030217 None:intergenic
AAGATAACTGTTTCTGAAAC+GGG 0.336859 1.1:+44029695 MS.gene034742:CDS
GTGTGGCGGGGTAGTGGTTA+AGG 0.353337 1.1:-44029226 None:intergenic
GGGGTAGTGGTTAAGGATGT+TGG 0.358288 1.1:-44029219 None:intergenic
ACAATGGTAATTTAGTGAAA+AGG 0.373660 1.1:+44029777 MS.gene034742:CDS
GAGGGTCCTTAGGTCTTAAA+GGG 0.373757 1.1:-44029820 None:intergenic
TGCAGACATGGCAGCATTAA+CGG 0.384911 1.1:-44029654 None:intergenic
CAATGGTAATTTAGTGAAAA+GGG 0.390826 1.1:+44029778 MS.gene034742:CDS
CAAAACCGAACTTGTTGAAC+CGG 0.392666 1.1:+44029439 MS.gene034742:CDS
GCGGAGGAGAGAAGCTCATT+TGG 0.394223 1.1:-44029158 None:intergenic
TGTAAAGCAGATAGTGCTAT+TGG 0.398352 1.1:-44029386 None:intergenic
TGTGGCGAATGGTGGTTATT+CGG 0.400384 1.1:+44030105 MS.gene034742:CDS
GTGTTATAATCCTAATACTT+TGG 0.401298 1.1:+44030207 MS.gene034742:CDS
GTGTCAGTGGTTGAGAATAA+AGG 0.402283 1.1:+44030070 MS.gene034742:CDS
CAGGCTCCAGTGGCGGGTGT+AGG 0.402892 1.1:+44030016 MS.gene034742:CDS
TCTTCTTACCCTACCTCAAC+CGG 0.409837 1.1:+44029410 MS.gene034742:CDS
CGCCACCGTGTTAACCGCTT+TGG 0.412897 1.1:+44029103 MS.gene034742:CDS
AGGCTCCAGTGGCGGGTGTA+GGG 0.415016 1.1:+44030017 MS.gene034742:CDS
TCACTCTATGCTTCATCGTC+AGG 0.418472 1.1:+44028805 MS.gene034742:CDS
CTATTTGTGTGGCGGGGTAG+TGG 0.421711 1.1:-44029232 None:intergenic
CACGTGGCACCCGGTTGAAT+CGG 0.422087 1.1:-44030187 None:intergenic
CATGGCGGGTACGAGGTAGT+TGG 0.438364 1.1:-44029303 None:intergenic
AATAACCGGTTCAACAAGTT+CGG 0.440240 1.1:-44029444 None:intergenic
TAAGATAACTGTTTCTGAAA+CGG 0.441815 1.1:+44029694 MS.gene034742:CDS
ATGGCTTCTATTTGTGTGGC+GGG 0.443354 1.1:-44029239 None:intergenic
GTTAACCATTAAATAAGAAC+CGG 0.447344 1.1:-44029495 None:intergenic
TCAGCGCAGGCTCCAGTGGC+GGG 0.450140 1.1:+44030010 MS.gene034742:CDS
TCGAGCATCGGTTTAATAAC+CGG 0.453310 1.1:-44029458 None:intergenic
GGAAAATGCGATTTCCCTAC+AGG 0.454025 1.1:+44030478 MS.gene034742:CDS
TGATTGTGCTCCGATTCAAC+CGG 0.456231 1.1:+44030177 MS.gene034742:CDS
GAAACGGGGTGGCCTTCGTT+AGG 0.456528 1.1:+44029710 MS.gene034742:CDS
GGAGCCTGCGCTGACTCCAT+TGG 0.457917 1.1:-44030001 None:intergenic
TGTCAGTGGTTGAGAATAAA+GGG 0.472795 1.1:+44030071 MS.gene034742:CDS
AAAACATTAAGAGGGTCCTT+AGG 0.475635 1.1:-44029830 None:intergenic
AAGAAGAATGAGAATGCAAA+AGG 0.478035 1.1:-44028772 None:intergenic
CCGTCCTTTCAGTATCCTGT+AGG 0.491055 1.1:-44030493 None:intergenic
CTCGAGTTTCTACGTCAAAC+CGG 0.491307 1.1:+44029476 MS.gene034742:CDS
GTCAGCGCAGGCTCCAGTGG+CGG 0.497248 1.1:+44030009 MS.gene034742:CDS
CTTTCAGAAGCAGGATCTAT+CGG 0.499352 1.1:+44028978 MS.gene034742:intron
TTAGGTGATAGCAATGAGAT+TGG 0.504036 1.1:+44029728 MS.gene034742:CDS
AGTGGTTAAGGATGTTGGAT+TGG 0.509507 1.1:-44029214 None:intergenic
AGATTAAAATTTGTTTGTCT+AGG 0.511137 1.1:-44029358 None:intergenic
TAAATCTTCGACACCGGTAG+CGG 0.514681 1.1:+44029973 MS.gene034742:CDS
CTCCTCCCTACACCCGCCAC+TGG 0.516279 1.1:-44030022 None:intergenic
GTCTCCAATGGAGTCAGCGC+AGG 0.517280 1.1:+44029997 MS.gene034742:CDS
TTATAATCCTAATACTTTGG+AGG 0.523932 1.1:+44030210 MS.gene034742:CDS
TTGAATGAACCGGTTGAGGT+AGG 0.527736 1.1:-44029419 None:intergenic
CTACCTTTGATGGTGTTGGT+AGG 0.530906 1.1:-44029028 None:intergenic
TCTACTACCTTTGATGGTGT+TGG 0.531152 1.1:-44029032 None:intergenic
CTTGATTATGCGTGTGGGGA+AGG 0.532027 1.1:+44030148 MS.gene034742:CDS
TCCATTGGAGACTCCGCTAC+CGG 0.532458 1.1:-44029986 None:intergenic
CTCCAGTGGCGGGTGTAGGG+AGG 0.533461 1.1:+44030020 MS.gene034742:CDS
TGAATGAACCGGTTGAGGTA+GGG 0.534233 1.1:-44029418 None:intergenic
GGAGTCAGCGCAGGCTCCAG+TGG 0.537251 1.1:+44030006 MS.gene034742:CDS
AGCGGTTAACACGGTGGCGT+CGG 0.540177 1.1:-44029099 None:intergenic
GGATTATAACACGTGGCACC+CGG 0.549858 1.1:-44030196 None:intergenic
CGTCCTTTCAGTATCCTGTA+GGG 0.550758 1.1:-44030492 None:intergenic
AATGGCTTCTATTTGTGTGG+CGG 0.558913 1.1:-44029240 None:intergenic
AGCAATGGCTTCTATTTGTG+TGG 0.560482 1.1:-44029243 None:intergenic
GACTAATAAATCTTCGACAC+CGG 0.561609 1.1:+44029967 MS.gene034742:CDS
ACCGGTAGCGGAGTCTCCAA+TGG 0.564011 1.1:+44029985 MS.gene034742:CDS
CAAATAGAAGCCATTGCTGT+CGG 0.564939 1.1:+44029248 MS.gene034742:CDS
CACGCGCTTGATTATGCGTG+TGG 0.567618 1.1:+44030142 MS.gene034742:CDS
GACAATGCTGCTTCTTACAA+TGG 0.568229 1.1:+44029761 MS.gene034742:CDS
ATCATATTGAAGTGCAGACA+TGG 0.572922 1.1:-44029666 None:intergenic
TAACCTACCAACACCATCAA+AGG 0.573834 1.1:+44029025 MS.gene034742:CDS
AACCTCGTTTCCGACAGCAA+TGG 0.574493 1.1:-44029258 None:intergenic
ATCAATCCTACACCGACACA+TGG 0.575276 1.1:+44029189 MS.gene034742:CDS
GGATTGATCGGCTGCAGCGG+AGG 0.575307 1.1:-44029174 None:intergenic
TGGGACCCCTTTAAGACCTA+AGG 0.575353 1.1:+44029814 MS.gene034742:CDS
TGTGTCGGTGTAGGATTGAT+CGG 0.579882 1.1:-44029186 None:intergenic
ATAGTAACTATTGAAAGCAA+AGG 0.580352 1.1:-44030242 None:intergenic
GGCGGGTGTAGGGAGGAGTA+AGG 0.582719 1.1:+44030027 MS.gene034742:CDS
GACACATCACCACCACTCAC+AGG 0.585277 1.1:-44030052 None:intergenic
TTGAGAATAAAGGGCAAACA+TGG 0.586606 1.1:+44030080 MS.gene034742:CDS
AAGCTCATTTGGCATGGCGA+CGG 0.590723 1.1:-44029147 None:intergenic
GGCGACGGTGACTTTGATGC+CGG 0.592716 1.1:-44029132 None:intergenic
GGATCTATCGGAATCAACTA+CGG 0.594084 1.1:+44028990 MS.gene034742:CDS
TTAGTCTCTGACACGGTCAA+CGG 0.594473 1.1:-44029950 None:intergenic
TGACGTAGAAACTCGAGCAT+CGG 0.596414 1.1:-44029470 None:intergenic
ACGCGCTTGATTATGCGTGT+GGG 0.599198 1.1:+44030143 MS.gene034742:CDS
TTAACCGCTTTGGCAAACTC+CGG 0.602683 1.1:+44029113 MS.gene034742:CDS
CGCGCTTGATTATGCGTGTG+GGG 0.602803 1.1:+44030144 MS.gene034742:CDS
TTGGATCCATGTGTCGGTGT+AGG 0.604328 1.1:-44029195 None:intergenic
GCTTTGTTTAAGCAAAACCC+TGG 0.613711 1.1:+44029572 MS.gene034742:CDS
GATAGCAATGAGATTGGTGC+TGG 0.613914 1.1:+44029734 MS.gene034742:CDS
GGAGAGAAGCTCATTTGGCA+TGG 0.616987 1.1:-44029153 None:intergenic
GATTATGCGTGTGGGGAAGG+TGG 0.618016 1.1:+44030151 MS.gene034742:CDS
CGGTGTCGTAAAGCTTTACA+CGG 0.619313 1.1:-44029079 None:intergenic
TTACCAGAATCAACAACACC+AGG 0.620171 1.1:-44029590 None:intergenic
CAAACATGGTGTGTGGCGAA+TGG 0.623219 1.1:+44030094 MS.gene034742:CDS
GTAGGATTGATCGGCTGCAG+CGG 0.624638 1.1:-44029177 None:intergenic
GTTTGCCAAAGCGGTTAACA+CGG 0.626215 1.1:-44029108 None:intergenic
GAGTGGTGGTGATGTGTCAG+TGG 0.626261 1.1:+44030057 MS.gene034742:CDS
TGGCTTCTATTTGTGTGGCG+GGG 0.633456 1.1:-44029238 None:intergenic
AGCCATTGCTGTCGGAAACG+AGG 0.633469 1.1:+44029256 MS.gene034742:CDS
GATTGTGCTCCGATTCAACC+GGG 0.633837 1.1:+44030178 MS.gene034742:CDS
AGGAGTAAGGTACCTGTGAG+TGG 0.639125 1.1:+44030040 MS.gene034742:CDS
ACATGGTGTGTGGCGAATGG+TGG 0.648790 1.1:+44030097 MS.gene034742:CDS
TACTATCAGAAGAAGTCACG+TGG 0.652788 1.1:+44030259 MS.gene034742:CDS
GTTGGATTGGATCCATGTGT+CGG 0.659166 1.1:-44029201 None:intergenic
GGCGAATGGTGGTTATTCGG+AGG 0.663457 1.1:+44030108 MS.gene034742:CDS
GATGCCGGAGTTTGCCAAAG+CGG 0.665378 1.1:-44029117 None:intergenic
ACTATCAGAAGAAGTCACGT+GGG 0.674383 1.1:+44030260 MS.gene034742:CDS
TAAAGGGCAAACATGGTGTG+TGG 0.677141 1.1:+44030087 MS.gene034742:CDS
AGATAACTGTTTCTGAAACG+GGG 0.677287 1.1:+44029696 MS.gene034742:CDS
TGCCAAAGCGGTTAACACGG+TGG 0.680941 1.1:-44029105 None:intergenic
AGATTTATTAGTCTCTGACA+CGG 0.680970 1.1:-44029957 None:intergenic
CTATCAGAAGAAGTCACGTG+GGG 0.690379 1.1:+44030261 MS.gene034742:CDS
AGGGTCCTTAGGTCTTAAAG+GGG 0.695922 1.1:-44029819 None:intergenic
TACCAGAATCAACAACACCA+GGG 0.704518 1.1:-44029589 None:intergenic
TAACTGTTTCTGAAACGGGG+TGG 0.710054 1.1:+44029699 MS.gene034742:CDS
AGTAAGGTACCTGTGAGTGG+TGG 0.718492 1.1:+44030043 MS.gene034742:CDS
TCATTGCTATCACCTAACGA+AGG 0.721926 1.1:-44029722 None:intergenic
TATCAGAAGAAGTCACGTGG+GGG 0.754485 1.1:+44030262 MS.gene034742:CDS
AGTATTAGGATTATAACACG+TGG 0.768628 1.1:-44030203 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAATAAAGACTTACT+AGG - chr1.1:44030334-44030353 None:intergenic 15.0%
!! CAAATAAAAAAACATTAAGA+GGG - chr1.1:44029841-44029860 None:intergenic 15.0%
!!! ATTTTTTACAGAAAATACAT+TGG - chr1.1:44030390-44030409 None:intergenic 15.0%
!!! TTTTAATGAGAATCAAAAAA+CGG + chr1.1:44029865-44029884 MS.gene034742:CDS 15.0%
!! ACAAAATAAAATAGAAAGAG+AGG - chr1.1:44028846-44028865 None:intergenic 20.0%
!! GCAAATAAAAAAACATTAAG+AGG - chr1.1:44029842-44029861 None:intergenic 20.0%
!! TTTAATGAGAATCAAAAAAC+GGG + chr1.1:44029866-44029885 MS.gene034742:CDS 20.0%
!!! AGATTAAAATTTGTTTGTCT+AGG - chr1.1:44029361-44029380 None:intergenic 20.0%
!!! ATAGATCTATTTTTCACATT+AGG + chr1.1:44028900-44028919 MS.gene034742:intron 20.0%
!!! GAAAATACATTGGTTAATAT+TGG - chr1.1:44030380-44030399 None:intergenic 20.0%
! ACAATGGTAATTTAGTGAAA+AGG + chr1.1:44029777-44029796 MS.gene034742:CDS 25.0%
! ATAGTAACTATTGAAAGCAA+AGG - chr1.1:44030245-44030264 None:intergenic 25.0%
! CAATGGTAATTTAGTGAAAA+GGG + chr1.1:44029778-44029797 MS.gene034742:CDS 25.0%
! GGTTATTTGACCTAAAAATA+TGG + chr1.1:44028921-44028940 MS.gene034742:intron 25.0%
! GTGTTATAATCCTAATACTT+TGG + chr1.1:44030207-44030226 MS.gene034742:CDS 25.0%
! GTTAACCATTAAATAAGAAC+CGG - chr1.1:44029498-44029517 None:intergenic 25.0%
! TTATAATCCTAATACTTTGG+AGG + chr1.1:44030210-44030229 MS.gene034742:CDS 25.0%
!! ATCATGTCAACCATATTTTT+AGG - chr1.1:44028934-44028953 None:intergenic 25.0%
!! TAAACCATAATTTTTCTCTG+AGG - chr1.1:44029897-44029916 None:intergenic 25.0%
!!! AAGTACAATTCAGTTGATAA+CGG + chr1.1:44028871-44028890 MS.gene034742:intron 25.0%
!!! TAAGATAACTGTTTCTGAAA+CGG + chr1.1:44029694-44029713 MS.gene034742:CDS 25.0%
AAGAAGAATGAGAATGCAAA+AGG - chr1.1:44028775-44028794 None:intergenic 30.0%
AGTATTAGGATTATAACACG+TGG - chr1.1:44030206-44030225 None:intergenic 30.0%
CTATGAATATATGTGATGCA+GGG + chr1.1:44030452-44030471 MS.gene034742:intron 30.0%
TCTATGAATATATGTGATGC+AGG + chr1.1:44030451-44030470 MS.gene034742:intron 30.0%
TTAGCAGCATAAGCAAAAAA+AGG - chr1.1:44029527-44029546 None:intergenic 30.0%
! AGATTTATTAGTCTCTGACA+CGG - chr1.1:44029960-44029979 None:intergenic 30.0%
! TCAAACCGGTTCTTATTTAA+TGG + chr1.1:44029490-44029509 MS.gene034742:CDS 30.0%
!! AAGATAACTGTTTCTGAAAC+GGG + chr1.1:44029695-44029714 MS.gene034742:CDS 30.0%
!!! GTTTGTCTAGGTTTTGTTTT+TGG - chr1.1:44029349-44029368 None:intergenic 30.0%
!!! TTAGTGAAAAGGGTTTTGAA+TGG + chr1.1:44029788-44029807 MS.gene034742:CDS 30.0%
AAAACATTAAGAGGGTCCTT+AGG - chr1.1:44029833-44029852 None:intergenic 35.0%
AAAAGCTCTACTACCTTTGA+TGG - chr1.1:44029041-44029060 None:intergenic 35.0%
AAGCATAGAGTGAGAGAAAA+AGG - chr1.1:44028798-44028817 None:intergenic 35.0%
AATATATGTGATGCAGGGTA+TGG + chr1.1:44030457-44030476 MS.gene034742:intron 35.0%
ATCATATTGAAGTGCAGACA+TGG - chr1.1:44029669-44029688 None:intergenic 35.0%
GACTAATAAATCTTCGACAC+CGG + chr1.1:44029967-44029986 MS.gene034742:CDS 35.0%
TGTAAAGCAGATAGTGCTAT+TGG - chr1.1:44029389-44029408 None:intergenic 35.0%
TGTCAGTGGTTGAGAATAAA+GGG + chr1.1:44030071-44030090 MS.gene034742:CDS 35.0%
TTAGGTGATAGCAATGAGAT+TGG + chr1.1:44029728-44029747 MS.gene034742:CDS 35.0%
TTGAGAATAAAGGGCAAACA+TGG + chr1.1:44030080-44030099 MS.gene034742:CDS 35.0%
! AATAACCGGTTCAACAAGTT+CGG - chr1.1:44029447-44029466 None:intergenic 35.0%
! ATTTTACCCTAGCGAGAAAA+AGG + chr1.1:44029916-44029935 MS.gene034742:CDS 35.0%
! CATAAACCTTTTTCTCGCTA+GGG - chr1.1:44029925-44029944 None:intergenic 35.0%
! TCATAAACCTTTTTCTCGCT+AGG - chr1.1:44029926-44029945 None:intergenic 35.0%
! TTTTTCTCACTTTCAGAAGC+AGG + chr1.1:44028969-44028988 MS.gene034742:intron 35.0%
!! ACCATAATTTTTCTCTGAGG+TGG - chr1.1:44029894-44029913 None:intergenic 35.0%
!! AGAAGCATGAACGTTTTTCA+TGG - chr1.1:44029324-44029343 None:intergenic 35.0%
!! AGATAACTGTTTCTGAAACG+GGG + chr1.1:44029696-44029715 MS.gene034742:CDS 35.0%
!!! AAAAGGGTTTTGAATGGAAG+TGG + chr1.1:44029794-44029813 MS.gene034742:CDS 35.0%
!!! AAAGGGTTTTGAATGGAAGT+GGG + chr1.1:44029795-44029814 MS.gene034742:CDS 35.0%
!!! AAGTTCGGTTTTGAATGAAC+CGG - chr1.1:44029432-44029451 None:intergenic 35.0%
!!! CCATAATTTTTCTCTGAGGT+GGG - chr1.1:44029893-44029912 None:intergenic 35.0%
AATGGCTTCTATTTGTGTGG+CGG - chr1.1:44029243-44029262 None:intergenic 40.0%
ACTATCAGAAGAAGTCACGT+GGG + chr1.1:44030260-44030279 MS.gene034742:CDS 40.0%
AGCAATGGCTTCTATTTGTG+TGG - chr1.1:44029246-44029265 None:intergenic 40.0%
AGTGGTTAAGGATGTTGGAT+TGG - chr1.1:44029217-44029236 None:intergenic 40.0%
CAAATAGAAGCCATTGCTGT+CGG + chr1.1:44029248-44029267 MS.gene034742:CDS 40.0%
CCCACCTCAGAGAAAAATTA+TGG + chr1.1:44029890-44029909 MS.gene034742:CDS 40.0%
CTTTCAGAAGCAGGATCTAT+CGG + chr1.1:44028978-44028997 MS.gene034742:intron 40.0%
GGATCTATCGGAATCAACTA+CGG + chr1.1:44028990-44029009 MS.gene034742:CDS 40.0%
GTGTCAGTGGTTGAGAATAA+AGG + chr1.1:44030070-44030089 MS.gene034742:CDS 40.0%
TAACCTACCAACACCATCAA+AGG + chr1.1:44029025-44029044 MS.gene034742:CDS 40.0%
TACCAGAATCAACAACACCA+GGG - chr1.1:44029592-44029611 None:intergenic 40.0%
TACTATCAGAAGAAGTCACG+TGG + chr1.1:44030259-44030278 MS.gene034742:CDS 40.0%
TCATTGCTATCACCTAACGA+AGG - chr1.1:44029725-44029744 None:intergenic 40.0%
TTACCAGAATCAACAACACC+AGG - chr1.1:44029593-44029612 None:intergenic 40.0%
! AGCATGAACGTTTTTCATGG+CGG - chr1.1:44029321-44029340 None:intergenic 40.0%
! AGGTAGTTGGTCGTGTTTTT+AGG - chr1.1:44029293-44029312 None:intergenic 40.0%
! GACAATGCTGCTTCTTACAA+TGG + chr1.1:44029761-44029780 MS.gene034742:CDS 40.0%
!! CAAAACCGAACTTGTTGAAC+CGG + chr1.1:44029439-44029458 MS.gene034742:CDS 40.0%
!! GCTTTGTTTAAGCAAAACCC+TGG + chr1.1:44029572-44029591 MS.gene034742:CDS 40.0%
!! GGTAGTTGGTCGTGTTTTTA+GGG - chr1.1:44029292-44029311 None:intergenic 40.0%
!! GTAGAGCTTTTGAAAGCACA+AGG + chr1.1:44029050-44029069 MS.gene034742:CDS 40.0%
!! TCGAGCATCGGTTTAATAAC+CGG - chr1.1:44029461-44029480 None:intergenic 40.0%
!! TCTACTACCTTTGATGGTGT+TGG - chr1.1:44029035-44029054 None:intergenic 40.0%
AGAGGGTCCTTAGGTCTTAA+AGG - chr1.1:44029824-44029843 None:intergenic 45.0%
AGGGTCCTTAGGTCTTAAAG+GGG - chr1.1:44029822-44029841 None:intergenic 45.0%
ATCAATCCTACACCGACACA+TGG + chr1.1:44029189-44029208 MS.gene034742:CDS 45.0%
ATGGCTTCTATTTGTGTGGC+GGG - chr1.1:44029242-44029261 None:intergenic 45.0%
CTATCAGAAGAAGTCACGTG+GGG + chr1.1:44030261-44030280 MS.gene034742:CDS 45.0%
CTCGAGTTTCTACGTCAAAC+CGG + chr1.1:44029476-44029495 MS.gene034742:CDS 45.0%
GAGGGTCCTTAGGTCTTAAA+GGG - chr1.1:44029823-44029842 None:intergenic 45.0%
GATAGCAATGAGATTGGTGC+TGG + chr1.1:44029734-44029753 MS.gene034742:CDS 45.0%
GGAAAATGCGATTTCCCTAC+AGG + chr1.1:44030478-44030497 MS.gene034742:CDS 45.0%
GTTTGCCAAAGCGGTTAACA+CGG - chr1.1:44029111-44029130 None:intergenic 45.0%
TAAAGGGCAAACATGGTGTG+TGG + chr1.1:44030087-44030106 MS.gene034742:CDS 45.0%
TAAATCTTCGACACCGGTAG+CGG + chr1.1:44029973-44029992 MS.gene034742:CDS 45.0%
TATCAGAAGAAGTCACGTGG+GGG + chr1.1:44030262-44030281 MS.gene034742:CDS 45.0%
TCACTCTATGCTTCATCGTC+AGG + chr1.1:44028805-44028824 MS.gene034742:CDS 45.0%
TCTTCTTACCCTACCTCAAC+CGG + chr1.1:44029410-44029429 MS.gene034742:CDS 45.0%
TGAATGAACCGGTTGAGGTA+GGG - chr1.1:44029421-44029440 None:intergenic 45.0%
TGACGTAGAAACTCGAGCAT+CGG - chr1.1:44029473-44029492 None:intergenic 45.0%
TGATTGTGCTCCGATTCAAC+CGG + chr1.1:44030177-44030196 MS.gene034742:CDS 45.0%
TGCAGACATGGCAGCATTAA+CGG - chr1.1:44029657-44029676 None:intergenic 45.0%
TGTGGCGAATGGTGGTTATT+CGG + chr1.1:44030105-44030124 MS.gene034742:CDS 45.0%
TTAACCGCTTTGGCAAACTC+CGG + chr1.1:44029113-44029132 MS.gene034742:CDS 45.0%
TTAGTCTCTGACACGGTCAA+CGG - chr1.1:44029953-44029972 None:intergenic 45.0%
TTGAATGAACCGGTTGAGGT+AGG - chr1.1:44029422-44029441 None:intergenic 45.0%
! GCATGAACGTTTTTCATGGC+GGG - chr1.1:44029320-44029339 None:intergenic 45.0%
! GCATGTGCCTCCAAAGTATT+AGG - chr1.1:44030220-44030239 None:intergenic 45.0%
! GTTGGATTGGATCCATGTGT+CGG - chr1.1:44029204-44029223 None:intergenic 45.0%
! TGTGTCGGTGTAGGATTGAT+CGG - chr1.1:44029189-44029208 None:intergenic 45.0%
!! AACCCTGGTGTTGTTGATTC+TGG + chr1.1:44029587-44029606 MS.gene034742:CDS 45.0%
!! CGGTGTCGTAAAGCTTTACA+CGG - chr1.1:44029082-44029101 None:intergenic 45.0%
!! CTACCTTTGATGGTGTTGGT+AGG - chr1.1:44029031-44029050 None:intergenic 45.0%
!! TAACTGTTTCTGAAACGGGG+TGG + chr1.1:44029699-44029718 MS.gene034742:CDS 45.0%
!!! GGTTTTGAATGAACCGGTTG+AGG - chr1.1:44029426-44029445 None:intergenic 45.0%
AACCTCGTTTCCGACAGCAA+TGG - chr1.1:44029261-44029280 None:intergenic 50.0%
AAGCTCATTTGGCATGGCGA+CGG - chr1.1:44029150-44029169 None:intergenic 50.0%
ACGCGCTTGATTATGCGTGT+GGG + chr1.1:44030143-44030162 MS.gene034742:CDS 50.0%
CAAACATGGTGTGTGGCGAA+TGG + chr1.1:44030094-44030113 MS.gene034742:CDS 50.0%
CTTGATTATGCGTGTGGGGA+AGG + chr1.1:44030148-44030167 MS.gene034742:CDS 50.0%
GATTGTGCTCCGATTCAACC+GGG + chr1.1:44030178-44030197 MS.gene034742:CDS 50.0%
GGAGAGAAGCTCATTTGGCA+TGG - chr1.1:44029156-44029175 None:intergenic 50.0%
GGATTATAACACGTGGCACC+CGG - chr1.1:44030199-44030218 None:intergenic 50.0%
TGGCTTCTATTTGTGTGGCG+GGG - chr1.1:44029241-44029260 None:intergenic 50.0%
! AGGAGTAAGGTACCTGTGAG+TGG + chr1.1:44030040-44030059 MS.gene034742:CDS 50.0%
! AGTAAGGTACCTGTGAGTGG+TGG + chr1.1:44030043-44030062 MS.gene034742:CDS 50.0%
! GGGGTAGTGGTTAAGGATGT+TGG - chr1.1:44029222-44029241 None:intergenic 50.0%
! TTGGATCCATGTGTCGGTGT+AGG - chr1.1:44029198-44029217 None:intergenic 50.0%
!! TGGGACCCCTTTAAGACCTA+AGG + chr1.1:44029814-44029833 MS.gene034742:CDS 50.0%
ACATGGTGTGTGGCGAATGG+TGG + chr1.1:44030097-44030116 MS.gene034742:CDS 55.0%
AGCCATTGCTGTCGGAAACG+AGG + chr1.1:44029256-44029275 MS.gene034742:CDS 55.0%
CACGCGCTTGATTATGCGTG+TGG + chr1.1:44030142-44030161 MS.gene034742:CDS 55.0%
CGCGCTTGATTATGCGTGTG+GGG + chr1.1:44030144-44030163 MS.gene034742:CDS 55.0%
GACACATCACCACCACTCAC+AGG - chr1.1:44030055-44030074 None:intergenic 55.0%
GATGCCGGAGTTTGCCAAAG+CGG - chr1.1:44029120-44029139 None:intergenic 55.0%
GATTATGCGTGTGGGGAAGG+TGG + chr1.1:44030151-44030170 MS.gene034742:CDS 55.0%
GCGGAGGAGAGAAGCTCATT+TGG - chr1.1:44029161-44029180 None:intergenic 55.0%
GGCGAATGGTGGTTATTCGG+AGG + chr1.1:44030108-44030127 MS.gene034742:CDS 55.0%
GTAGGATTGATCGGCTGCAG+CGG - chr1.1:44029180-44029199 None:intergenic 55.0%
TCCATTGGAGACTCCGCTAC+CGG - chr1.1:44029989-44030008 None:intergenic 55.0%
TGCCAAAGCGGTTAACACGG+TGG - chr1.1:44029108-44029127 None:intergenic 55.0%
! CTATTTGTGTGGCGGGGTAG+TGG - chr1.1:44029235-44029254 None:intergenic 55.0%
! GAGTGGTGGTGATGTGTCAG+TGG + chr1.1:44030057-44030076 MS.gene034742:CDS 55.0%
!! GGAGGCACGTGTGATTTTGG+TGG + chr1.1:44030283-44030302 MS.gene034742:CDS 55.0%
!!! CGTTTTTCATGGCGGGTACG+AGG - chr1.1:44029313-44029332 None:intergenic 55.0%
AGCGGTTAACACGGTGGCGT+CGG - chr1.1:44029102-44029121 None:intergenic 60.0%
CACGTGGCACCCGGTTGAAT+CGG - chr1.1:44030190-44030209 None:intergenic 60.0%
CAGAAGAAGTCACGTGGGGG+AGG + chr1.1:44030265-44030284 MS.gene034742:CDS 60.0%
CGCCACCGTGTTAACCGCTT+TGG + chr1.1:44029103-44029122 MS.gene034742:CDS 60.0%
GAAACGGGGTGGCCTTCGTT+AGG + chr1.1:44029710-44029729 MS.gene034742:CDS 60.0%
GGCGACGGTGACTTTGATGC+CGG - chr1.1:44029135-44029154 None:intergenic 60.0%
GTCTCCAATGGAGTCAGCGC+AGG + chr1.1:44029997-44030016 MS.gene034742:CDS 60.0%
! GTGTGGCGGGGTAGTGGTTA+AGG - chr1.1:44029229-44029248 None:intergenic 60.0%
!! ACCGGTAGCGGAGTCTCCAA+TGG + chr1.1:44029985-44030004 MS.gene034742:CDS 60.0%
!! CATGGCGGGTACGAGGTAGT+TGG - chr1.1:44029306-44029325 None:intergenic 60.0%
!! GGGGGAGGCACGTGTGATTT+TGG + chr1.1:44030280-44030299 MS.gene034742:CDS 60.0%
GGATTGATCGGCTGCAGCGG+AGG - chr1.1:44029177-44029196 None:intergenic 65.0%
GGCGGGTGTAGGGAGGAGTA+AGG + chr1.1:44030027-44030046 MS.gene034742:CDS 65.0%
!! AGGCTCCAGTGGCGGGTGTA+GGG + chr1.1:44030017-44030036 MS.gene034742:CDS 65.0%
!! GGAGCCTGCGCTGACTCCAT+TGG - chr1.1:44030004-44030023 None:intergenic 65.0%
CTCCTCCCTACACCCGCCAC+TGG - chr1.1:44030025-44030044 None:intergenic 70.0%
GGAGTCAGCGCAGGCTCCAG+TGG + chr1.1:44030006-44030025 MS.gene034742:CDS 70.0%
GTCAGCGCAGGCTCCAGTGG+CGG + chr1.1:44030009-44030028 MS.gene034742:CDS 70.0%
TCAGCGCAGGCTCCAGTGGC+GGG + chr1.1:44030010-44030029 MS.gene034742:CDS 70.0%
!! CAGGCTCCAGTGGCGGGTGT+AGG + chr1.1:44030016-44030035 MS.gene034742:CDS 70.0%
!! CTCCAGTGGCGGGTGTAGGG+AGG + chr1.1:44030020-44030039 MS.gene034742:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 44028766 44030507 44028766 ID=MS.gene034742
chr1.1 mRNA 44028766 44030507 44028766 ID=MS.gene034742.t1;Parent=MS.gene034742
chr1.1 exon 44028766 44028826 44028766 ID=MS.gene034742.t1.exon1;Parent=MS.gene034742.t1
chr1.1 CDS 44028766 44028826 44028766 ID=cds.MS.gene034742.t1;Parent=MS.gene034742.t1
chr1.1 exon 44028985 44030334 44028985 ID=MS.gene034742.t1.exon2;Parent=MS.gene034742.t1
chr1.1 CDS 44028985 44030334 44028985 ID=cds.MS.gene034742.t1;Parent=MS.gene034742.t1
chr1.1 exon 44030473 44030507 44030473 ID=MS.gene034742.t1.exon3;Parent=MS.gene034742.t1
chr1.1 CDS 44030473 44030507 44030473 ID=cds.MS.gene034742.t1;Parent=MS.gene034742.t1
Gene Sequence

>MS.gene034742

ATGGCTCCTTTTGCATTCTCATTCTTCTTCCTTTTTCTCTCACTCTATGCTTCATCGTCAGGTAAATCTATTAAATTCCTCTCTTTCTATTTTATTTTGTGTCATAAGTACAATTCAGTTGATAACGGCGTATAATAGATCTATTTTTCACATTAGGTTATTTGACCTAAAAATATGGTTGACATGATTTTTCATTTCTTGTGTTTTTCTCACTTTCAGAAGCAGGATCTATCGGAATCAACTACGGTAGAATAGCTGATAACCTACCAACACCATCAAAGGTAGTAGAGCTTTTGAAAGCACAAGGTTTCAGCCGTGTAAAGCTTTACGACACCGACGCCACCGTGTTAACCGCTTTGGCAAACTCCGGCATCAAAGTCACCGTCGCCATGCCAAATGAGCTTCTCTCCTCCGCTGCAGCCGATCAATCCTACACCGACACATGGATCCAATCCAACATCCTTAACCACTACCCCGCCACACAAATAGAAGCCATTGCTGTCGGAAACGAGGTTTTCGTAGACCCTAAAAACACGACCAACTACCTCGTACCCGCCATGAAAAACGTTCATGCTTCTCTCCAAAAACAAAACCTAGACAAACAAATTTTAATCTCTTCTCCAATAGCACTATCTGCTTTACAATCTTCTTACCCTACCTCAACCGGTTCATTCAAAACCGAACTTGTTGAACCGGTTATTAAACCGATGCTCGAGTTTCTACGTCAAACCGGTTCTTATTTAATGGTTAACGCTTATCCTTTTTTTGCTTATGCTGCTAACTCAGACACAATCTCATTAGATTATGCTTTGTTTAAGCAAAACCCTGGTGTTGTTGATTCTGGTAATCATTTGAAATATGATAATCTTTTCGACGCTCAAATCGACGCCGTTAATGCTGCCATGTCTGCACTTCAATATGATGATGTTAAGATAACTGTTTCTGAAACGGGGTGGCCTTCGTTAGGTGATAGCAATGAGATTGGTGCTGGTCAAGACAATGCTGCTTCTTACAATGGTAATTTAGTGAAAAGGGTTTTGAATGGAAGTGGGACCCCTTTAAGACCTAAGGACCCTCTTAATGTTTTTTTATTTGCTCTTTTTAATGAGAATCAAAAAACGGGTCCCACCTCAGAGAAAAATTATGGTTTATTTTACCCTAGCGAGAAAAAGGTTTATGATATTCCGTTGACCGTGTCAGAGACTAATAAATCTTCGACACCGGTAGCGGAGTCTCCAATGGAGTCAGCGCAGGCTCCAGTGGCGGGTGTAGGGAGGAGTAAGGTACCTGTGAGTGGTGGTGATGTGTCAGTGGTTGAGAATAAAGGGCAAACATGGTGTGTGGCGAATGGTGGTTATTCGGAGGAGAAGTTGAAACACGCGCTTGATTATGCGTGTGGGGAAGGTGGTGCTGATTGTGCTCCGATTCAACCGGGTGCCACGTGTTATAATCCTAATACTTTGGAGGCACATGCTTCCTTTGCTTTCAATAGTTACTATCAGAAGAAGTCACGTGGGGGAGGCACGTGTGATTTTGGTGGTGCTGCTTATGTTGTTACACAAGCTCCTAGTAAGTCTTTATTATTAATTCTTTGTAATATAATTTTTTTTGCCAATATTAACCAATGTATTTTCTGTAAAAAATTTGCAATTTGCATATGAGTGAAGAGTTTTTTTTAATTGTGTTCTATGAATATATGTGATGCAGGGTATGGAAAATGCGATTTCCCTACAGGATACTGA
Protein sequence

>MS.gene034742.t1

MAPFAFSFFFLFLSLYASSSEAGSIGINYGRIADNLPTPSKVVELLKAQGFSRVKLYDTDATVLTALANSGIKVTVAMPNELLSSAAADQSYTDTWIQSNILNHYPATQIEAIAVGNEVFVDPKNTTNYLVPAMKNVHASLQKQNLDKQILISSPIALSALQSSYPTSTGSFKTELVEPVIKPMLEFLRQTGSYLMVNAYPFFAYAANSDTISLDYALFKQNPGVVDSGNHLKYDNLFDAQIDAVNAAMSALQYDDVKITVSETGWPSLGDSNEIGAGQDNAASYNGNLVKRVLNGSGTPLRPKDPLNVFLFALFNENQKTGPTSEKNYGLFYPSEKKVYDIPLTVSETNKSSTPVAESPMESAQAPVAGVGRSKVPVSGGDVSVVENKGQTWCVANGGYSEEKLKHALDYACGEGGADCAPIQPGATCYNPNTLEAHASFAFNSYYQKKSRGGGTCDFGGAAYVVTQAPRYGKCDFPTGY