AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41026

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41026.t1 MTR_1g056640 96.674 481 16 0 1 481 14 494 0.0 957
MS.gene41026.t1 MTR_5g085580 63.067 463 158 2 20 481 20 470 0.0 602
MS.gene41026.t1 MTR_3g080410 68.389 329 104 0 20 348 21 349 6.16e-163 465
MS.gene41026.t1 MTR_7g053500 42.140 458 237 7 26 479 27 460 2.79e-125 373
MS.gene41026.t1 MTR_8g012400 39.540 478 256 6 8 479 10 460 2.41e-122 365
MS.gene41026.t1 MTR_1g031900 39.501 481 254 3 4 481 3 449 5.68e-120 361
MS.gene41026.t1 MTR_1g031900 39.623 477 251 3 4 477 3 445 7.23e-120 360
MS.gene41026.t1 MTR_6g088885 38.608 474 261 5 6 475 5 452 1.86e-118 357
MS.gene41026.t1 MTR_4g069940 38.574 477 265 6 9 480 9 462 2.47e-118 355
MS.gene41026.t1 MTR_3g065460 39.540 478 248 4 8 478 3 446 9.38e-118 355
MS.gene41026.t1 MTR_4g088155 38.285 478 264 7 9 479 6 459 1.98e-114 345
MS.gene41026.t1 MTR_3g116510 38.205 479 260 7 9 480 8 457 9.14e-114 343
MS.gene41026.t1 MTR_8g085720 38.293 457 246 4 25 478 26 449 7.23e-113 342
MS.gene41026.t1 MTR_5g078200 37.787 479 260 4 4 478 1 445 1.89e-112 346
MS.gene41026.t1 MTR_3g083580 37.637 457 245 5 25 477 26 446 3.77e-112 340
MS.gene41026.t1 MTR_4g132280 37.705 488 255 6 6 478 14 467 9.01e-111 338
MS.gene41026.t1 MTR_5g078200 39.013 446 235 3 36 478 1 412 1.72e-108 335
MS.gene41026.t1 MTR_8g102340 38.445 476 229 6 2 475 3 416 1.13e-106 326
MS.gene41026.t1 MTR_1g022160 37.924 472 259 8 25 480 24 477 1.30e-106 325
MS.gene41026.t1 MTR_7g053500 41.872 406 208 7 78 479 2 383 1.62e-106 322
MS.gene41026.t1 MTR_4g083500 41.379 464 253 12 19 478 38 486 1.10e-105 325
MS.gene41026.t1 MTR_1g022160 37.953 469 257 8 25 477 24 474 1.89e-105 323
MS.gene41026.t1 MTR_1g022160 38.229 463 252 8 25 471 24 468 3.28e-105 322
MS.gene41026.t1 MTR_7g026340 39.224 464 247 11 16 475 14 446 5.64e-102 313
MS.gene41026.t1 MTR_1g077990 49.231 325 161 4 19 342 25 346 7.26e-102 311
MS.gene41026.t1 MTR_8g012400 38.670 406 218 5 78 479 2 380 1.82e-99 304
MS.gene41026.t1 MTR_4g084480 41.969 386 216 5 4 385 1 382 5.32e-99 303
MS.gene41026.t1 MTR_4g084480 44.353 363 190 6 1 355 1 359 7.85e-98 300
MS.gene41026.t1 MTR_4g084480 44.353 363 190 6 1 355 1 359 1.10e-97 300
MS.gene41026.t1 MTR_4g010200 42.782 381 200 5 7 379 8 378 4.71e-97 298
MS.gene41026.t1 MTR_4g052970 47.059 323 166 4 24 344 28 347 4.34e-96 295
MS.gene41026.t1 MTR_2g086530 42.075 347 194 5 1 344 3 345 1.56e-91 284
MS.gene41026.t1 MTR_2g086530 43.750 320 175 4 26 344 9 324 2.51e-90 280
MS.gene41026.t1 MTR_2g019345 43.284 335 186 4 9 342 8 339 3.50e-89 278
MS.gene41026.t1 MTR_1g007810 42.857 329 181 4 15 341 6 329 2.94e-88 275
MS.gene41026.t1 MTR_4g114850 43.087 311 175 2 23 332 24 333 7.05e-87 271
MS.gene41026.t1 MTR_4g114850 43.087 311 175 2 23 332 24 333 1.15e-86 271
MS.gene41026.t1 MTR_4g114850 43.087 311 175 2 23 332 24 333 2.63e-86 270
MS.gene41026.t1 MTR_3g116510 38.352 352 186 4 131 480 1 323 1.04e-82 259
MS.gene41026.t1 MTR_1g022160 40.557 323 189 3 25 345 24 345 2.96e-81 258
MS.gene41026.t1 MTR_1g052430 41.433 321 175 7 25 342 32 342 8.70e-73 236
MS.gene41026.t1 MTR_4g076255 40.187 321 178 7 22 342 22 328 8.61e-72 231
MS.gene41026.t1 MTR_1g053320 32.365 482 278 16 7 478 14 457 7.10e-71 233
MS.gene41026.t1 MTR_4g076500 39.748 317 178 5 21 335 74 379 4.42e-70 228
MS.gene41026.t1 MTR_2g034480 37.982 337 194 8 8 340 10 335 1.20e-69 226
MS.gene41026.t1 MTR_4g076490 39.688 320 178 7 24 342 96 401 2.95e-69 227
MS.gene41026.t1 MTR_4g076470 38.462 338 191 8 6 340 1 324 3.53e-69 224
MS.gene41026.t1 MTR_4g076440 38.710 341 190 9 6 342 1 326 1.12e-67 220
MS.gene41026.t1 MTR_2g034470 37.313 335 193 9 22 350 27 350 3.03e-67 220
MS.gene41026.t1 MTR_4g112025 31.481 486 286 16 4 479 10 458 9.60e-67 223
MS.gene41026.t1 MTR_4g076570 36.471 340 204 7 18 354 15 345 1.62e-66 218
MS.gene41026.t1 MTR_4g076430 38.123 341 192 9 6 342 1 326 1.65e-65 214
MS.gene41026.t1 MTR_2g034440 37.695 321 185 9 22 338 19 328 8.06e-65 213
MS.gene41026.t1 MTR_7g081350 36.036 333 204 6 8 340 10 333 8.15e-65 213
MS.gene41026.t1 MTR_2g034470 37.231 325 187 9 32 350 2 315 2.63e-64 211
MS.gene41026.t1 MTR_2g027560 32.903 465 266 14 24 480 27 453 2.42e-63 213
MS.gene41026.t1 MTR_1g010120 30.992 484 281 17 6 477 6 448 7.83e-62 209
MS.gene41026.t1 MTR_7g081370 35.277 343 197 8 1 340 1 321 7.96e-60 199
MS.gene41026.t1 MTR_3g031770 31.770 469 270 16 17 478 21 446 9.07e-60 204
MS.gene41026.t1 MTR_8g092070 29.004 462 283 15 25 478 34 458 2.40e-58 202
MS.gene41026.t1 MTR_4g124440 29.400 483 286 18 9 477 10 451 1.04e-56 196
MS.gene41026.t1 MTR_3g108600 29.707 478 269 16 9 477 16 435 2.10e-56 194
MS.gene41026.t1 MTR_3g095050 30.519 462 274 18 25 478 34 456 3.00e-56 194
MS.gene41026.t1 MTR_7g085390 29.892 465 274 18 25 477 26 450 9.28e-54 187
MS.gene41026.t1 MTR_6g032820 30.905 453 256 20 25 461 26 437 1.34e-50 178
MS.gene41026.t1 MTR_5g081720 32.680 306 192 9 41 341 53 349 1.29e-43 158
MS.gene41026.t1 MTR_4g134280 31.383 376 211 15 113 480 3 339 1.47e-41 152
MS.gene41026.t1 MTR_5g015720 27.635 427 266 11 54 477 28 414 2.36e-38 144
MS.gene41026.t1 MTR_8g089400 50.476 105 47 1 376 475 15 119 1.50e-27 108
MS.gene41026.t1 MTR_8g085440 48.454 97 47 2 382 478 23 116 5.58e-27 105
MS.gene41026.t1 MTR_8g085390 52.273 88 41 1 392 479 29 115 5.62e-27 107
MS.gene41026.t1 MTR_8g089400 50.476 105 47 1 376 475 35 139 5.70e-27 107
MS.gene41026.t1 MTR_1g084820 60.000 85 32 2 389 473 416 498 1.04e-25 110
MS.gene41026.t1 MTR_1g084820 60.000 85 32 2 389 473 416 498 1.40e-25 110
MS.gene41026.t1 MTR_7g111600 42.568 148 74 5 334 478 105 244 3.01e-25 104
MS.gene41026.t1 MTR_7g111600 42.568 148 74 5 334 478 105 244 6.02e-25 105
MS.gene41026.t1 MTR_7g111600 42.568 148 74 5 334 478 105 244 9.18e-25 104
MS.gene41026.t1 MTR_3g048280 41.667 132 65 3 350 481 80 199 1.77e-24 101
MS.gene41026.t1 MTR_8g085400 53.488 86 36 2 385 470 25 106 4.08e-24 97.4
MS.gene41026.t1 MTR_8g085420 47.826 92 45 2 383 474 24 112 4.68e-24 97.8
MS.gene41026.t1 MTR_5g091650 48.889 90 45 1 390 479 105 193 8.49e-24 99.0
MS.gene41026.t1 MTR_5g091650 48.889 90 45 1 390 479 105 193 1.15e-23 100
MS.gene41026.t1 MTR_5g097420 48.276 87 45 0 391 477 28 114 4.33e-23 94.7
MS.gene41026.t1 MTR_3g082080 55.128 78 34 1 393 470 157 233 2.40e-22 96.3
MS.gene41026.t1 MTR_4g133735 46.067 89 48 0 389 477 24 112 5.87e-22 91.3
MS.gene41026.t1 MTR_4g079530 45.161 93 51 0 389 481 33 125 9.89e-22 90.9
MS.gene41026.t1 MTR_4g079530 45.652 92 50 0 389 480 33 124 3.10e-21 91.3
MS.gene41026.t1 MTR_1g116870 47.059 85 44 1 393 477 276 359 4.50e-21 95.1
MS.gene41026.t1 MTR_2g049670 52.941 85 38 2 393 477 158 240 8.35e-21 93.6
MS.gene41026.t1 MTR_4g133730 44.706 85 47 0 393 477 28 112 8.60e-21 88.2
MS.gene41026.t1 MTR_4g109490 51.765 85 39 2 393 477 24 106 4.97e-20 89.0
MS.gene41026.t1 MTR_8g088120 53.247 77 35 1 401 477 56 131 1.30e-19 87.8
MS.gene41026.t1 MTR_4g083070 45.455 88 46 2 383 470 11 96 6.50e-18 82.4
MS.gene41026.t1 MTR_5g044530 46.053 76 40 1 388 463 17 91 1.14e-16 80.1
MS.gene41026.t1 MTR_4g036775 40.777 103 55 3 256 358 94 190 4.25e-15 74.7
MS.gene41026.t1 MTR_4g036775 40.000 80 48 0 8 87 5 84 2.70e-12 66.6
MS.gene41026.t1 MTR_4g036680 40.777 103 55 3 256 358 94 190 6.46e-15 74.3
MS.gene41026.t1 MTR_4g036680 43.939 66 37 0 22 87 19 84 5.42e-11 62.8
MS.gene41026.t1 MTR_2g072500 40.000 90 52 1 388 477 3 90 4.27e-14 68.2
MS.gene41026.t1 MTR_8g471000 35.714 84 53 1 130 213 5 87 1.29e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41026.t1 AT5G55180 71.212 462 110 3 20 481 22 460 0.0 671
MS.gene41026.t1 AT5G55180 71.175 451 107 3 20 470 22 449 0.0 650
MS.gene41026.t1 AT4G26830 65.900 478 136 5 5 481 4 455 0.0 639
MS.gene41026.t1 AT4G26830 66.739 463 128 4 19 481 23 459 0.0 636
MS.gene41026.t1 AT2G05790 64.935 462 151 4 21 481 21 472 0.0 625
MS.gene41026.t1 AT5G56590 39.783 460 248 4 23 480 24 456 6.69e-122 366
MS.gene41026.t1 AT4G29360 40.042 472 271 5 9 475 9 473 1.01e-119 361
MS.gene41026.t1 AT4G29360 39.958 473 270 5 10 475 18 483 8.79e-119 359
MS.gene41026.t1 AT5G24318 40.377 478 251 10 4 477 8 455 9.20e-119 356
MS.gene41026.t1 AT3G07320 41.845 466 233 8 22 479 22 457 1.68e-118 355
MS.gene41026.t1 AT2G16230 39.780 455 244 6 25 478 25 450 2.44e-117 354
MS.gene41026.t1 AT1G66250 39.827 462 240 4 19 477 26 452 1.87e-115 349
MS.gene41026.t1 AT4G34480 40.592 473 246 7 8 478 9 448 4.02e-115 348
MS.gene41026.t1 AT5G24318 40.340 471 247 10 4 470 8 448 4.72e-115 346
MS.gene41026.t1 AT2G01630 38.731 457 243 4 25 478 23 445 5.40e-114 345
MS.gene41026.t1 AT2G01630 38.530 449 239 4 25 470 23 437 3.75e-111 336
MS.gene41026.t1 AT4G14080 37.093 461 263 5 22 479 39 475 5.30e-110 334
MS.gene41026.t1 AT1G11820 37.637 457 248 3 25 478 44 466 5.52e-110 335
MS.gene41026.t1 AT3G13560 38.229 463 248 4 18 477 19 446 1.53e-109 334
MS.gene41026.t1 AT3G13560 38.229 463 248 4 18 477 19 446 1.53e-109 334
MS.gene41026.t1 AT3G13560 38.229 463 248 4 18 477 19 446 1.53e-109 334
MS.gene41026.t1 AT3G13560 38.229 463 248 4 18 477 19 446 1.53e-109 334
MS.gene41026.t1 AT3G13560 38.229 463 248 4 18 477 19 446 1.53e-109 334
MS.gene41026.t1 AT1G11820 37.416 449 244 3 25 470 44 458 6.26e-106 324
MS.gene41026.t1 AT3G23770 37.931 464 258 6 22 479 34 473 8.16e-105 321
MS.gene41026.t1 AT1G30080 46.726 336 176 3 8 342 19 352 8.00e-100 305
MS.gene41026.t1 AT1G30080 46.726 336 176 3 8 342 19 352 1.93e-99 305
MS.gene41026.t1 AT2G27500 45.455 319 172 2 25 342 29 346 2.84e-98 301
MS.gene41026.t1 AT2G27500 45.455 319 172 2 25 342 29 346 9.57e-98 300
MS.gene41026.t1 AT1G32860 46.440 323 166 5 24 342 28 347 2.24e-97 300
MS.gene41026.t1 AT4G18340 44.126 349 189 4 10 354 16 362 1.37e-95 294
MS.gene41026.t1 AT4G18340 44.507 355 190 5 10 359 16 368 3.42e-95 293
MS.gene41026.t1 AT5G42100 46.407 334 173 5 13 342 15 346 1.21e-93 290
MS.gene41026.t1 AT5G42100 46.407 334 173 5 13 342 15 346 1.42e-93 290
MS.gene41026.t1 AT5G24318 43.732 343 183 6 4 342 8 344 1.58e-91 283
MS.gene41026.t1 AT2G01630 37.656 401 213 4 25 422 23 389 1.32e-90 281
MS.gene41026.t1 AT5G42720 42.857 378 206 8 6 377 6 379 1.77e-90 283
MS.gene41026.t1 AT3G55430 35.032 471 263 13 11 477 18 449 1.91e-89 280
MS.gene41026.t1 AT4G34480 42.899 345 193 3 8 350 9 351 3.04e-89 277
MS.gene41026.t1 AT2G26600 43.614 321 179 2 23 342 32 351 1.24e-87 274
MS.gene41026.t1 AT3G15800 43.692 325 180 3 23 345 41 364 3.26e-87 273
MS.gene41026.t1 AT5G24318 40.116 344 178 5 134 477 1 316 3.56e-86 268
MS.gene41026.t1 AT4G34480 40.761 368 183 7 113 478 3 337 3.48e-83 262
MS.gene41026.t1 AT2G27500 44.776 268 146 2 76 342 2 268 4.93e-78 246
MS.gene41026.t1 AT2G39640 32.924 489 271 14 1 478 1 443 7.61e-77 251
MS.gene41026.t1 AT2G39640 33.696 92 60 1 387 478 454 544 1.90e-14 76.3
MS.gene41026.t1 AT1G11820 37.994 329 200 2 25 350 44 371 3.12e-74 239
MS.gene41026.t1 AT4G16260 39.474 342 196 7 6 347 5 335 3.26e-74 238
MS.gene41026.t1 AT3G57270 40.062 322 184 6 22 342 24 337 1.19e-73 236
MS.gene41026.t1 AT3G46570 40.588 340 190 9 8 342 10 342 2.85e-70 228
MS.gene41026.t1 AT4G16260 40.506 316 177 7 32 347 2 306 8.40e-70 225
MS.gene41026.t1 AT3G61810 36.826 334 196 4 16 342 44 369 1.60e-68 224
MS.gene41026.t1 AT5G20330 40.588 340 186 8 6 338 9 339 2.11e-67 220
MS.gene41026.t1 AT5G20390 41.824 318 175 7 22 338 30 338 2.19e-67 220
MS.gene41026.t1 AT3G24330 30.103 485 290 15 6 479 20 466 1.34e-65 220
MS.gene41026.t1 AT5G20340 39.938 323 183 8 22 342 40 353 3.23e-64 212
MS.gene41026.t1 AT2G26600 42.857 259 144 3 85 342 2 257 6.56e-64 209
MS.gene41026.t1 AT1G33220 40.575 313 176 7 22 332 31 335 1.25e-63 210
MS.gene41026.t1 AT4G17180 32.983 476 267 16 13 480 12 443 2.43e-62 211
MS.gene41026.t1 AT1G77790 37.135 342 204 8 4 342 8 341 1.58e-61 204
MS.gene41026.t1 AT3G57260 36.095 338 200 8 8 342 12 336 6.87e-61 202
MS.gene41026.t1 AT4G31140 30.021 483 288 15 5 477 6 448 8.43e-61 207
MS.gene41026.t1 AT3G57260 36.095 338 200 8 8 342 28 352 1.34e-60 202
MS.gene41026.t1 AT1G77780 36.499 337 199 9 10 342 7 332 7.56e-60 201
MS.gene41026.t1 AT5G20870 31.864 499 265 23 4 478 13 460 2.40e-59 203
MS.gene41026.t1 AT3G04010 30.083 482 285 18 9 478 17 458 1.25e-58 201
MS.gene41026.t1 AT3G57240 37.188 320 185 9 22 340 32 336 2.68e-58 196
MS.gene41026.t1 AT5G58090 30.490 469 275 17 21 478 18 446 9.14e-58 198
MS.gene41026.t1 AT5G18220 30.444 473 276 18 19 478 24 456 1.27e-57 198
MS.gene41026.t1 AT2G19440 31.330 466 267 20 25 478 21 445 1.71e-57 197
MS.gene41026.t1 AT2G19440 31.330 466 267 20 25 478 21 445 1.71e-57 197
MS.gene41026.t1 AT5G64790 29.854 479 287 18 11 479 14 453 2.84e-57 197
MS.gene41026.t1 AT1G64760 31.478 467 265 20 25 478 25 449 2.92e-57 197
MS.gene41026.t1 AT1G64760 31.478 467 265 20 25 478 25 449 2.92e-57 197
MS.gene41026.t1 AT5G58480 28.753 473 285 14 13 477 16 444 3.58e-49 175
MS.gene41026.t1 AT5G20560 35.119 336 199 10 6 334 13 336 7.17e-47 166
MS.gene41026.t1 AT3G55780 30.667 300 199 6 38 333 48 342 1.46e-44 160
MS.gene41026.t1 AT5G67460 43.802 121 68 0 357 477 257 377 4.85e-28 115
MS.gene41026.t1 AT2G30933 55.056 89 39 1 391 479 80 167 1.67e-26 107
MS.gene41026.t1 AT5G67460 42.276 123 70 1 357 478 257 379 4.29e-26 109
MS.gene41026.t1 AT1G29380 57.647 85 35 1 393 477 148 231 1.52e-24 104
MS.gene41026.t1 AT1G29380 57.647 85 35 1 393 477 148 231 1.60e-24 102
MS.gene41026.t1 AT1G18650 46.875 96 50 1 383 478 11 105 2.38e-24 98.6
MS.gene41026.t1 AT1G18650 46.875 96 50 1 383 478 11 105 2.92e-24 100
MS.gene41026.t1 AT4G13600 50.000 86 42 1 393 478 61 145 2.99e-24 101
MS.gene41026.t1 AT1G09460 54.348 92 39 2 389 480 133 221 1.19e-23 102
MS.gene41026.t1 AT2G30933 56.250 80 34 1 391 470 80 158 3.20e-23 96.3
MS.gene41026.t1 AT2G30933 56.250 80 34 1 391 470 80 158 3.20e-23 96.3
MS.gene41026.t1 AT2G04910 44.706 85 47 0 393 477 15 99 1.23e-22 92.8
MS.gene41026.t1 AT4G05430 47.191 89 47 0 389 477 19 107 1.44e-22 94.0
MS.gene41026.t1 AT4G05430 47.191 89 47 0 389 477 44 132 1.68e-22 94.7
MS.gene41026.t1 AT1G29380 58.974 78 31 1 393 470 148 224 1.79e-22 96.3
MS.gene41026.t1 AT1G29380 58.974 78 31 1 393 470 148 224 1.79e-22 96.3
MS.gene41026.t1 AT1G66870 44.828 87 48 0 389 475 22 108 1.97e-22 92.4
MS.gene41026.t1 AT5G35740 45.652 92 49 1 387 477 24 115 2.34e-22 92.4
MS.gene41026.t1 AT1G66870 45.349 86 47 0 390 475 50 135 2.82e-22 92.8
MS.gene41026.t1 AT1G79480 48.235 85 43 1 393 477 310 393 1.38e-21 97.1
MS.gene41026.t1 AT1G79480 48.235 85 43 1 393 477 311 394 1.39e-21 97.1
MS.gene41026.t1 AT2G04910 46.154 78 42 0 393 470 15 92 2.51e-21 89.7
MS.gene41026.t1 AT5G61130 43.678 87 48 1 392 478 20 105 3.85e-20 89.0
MS.gene41026.t1 AT1G66855 38.636 88 54 0 390 477 23 110 4.84e-20 85.9
MS.gene41026.t1 AT5G63250 46.237 93 47 3 387 477 37 128 1.54e-19 85.1
MS.gene41026.t1 AT3G58100 40.000 100 56 1 380 479 32 127 1.83e-19 86.3
MS.gene41026.t1 AT5G08000 44.944 89 48 1 390 478 37 124 2.29e-19 87.0
MS.gene41026.t1 AT4G05430 49.333 75 38 0 389 463 44 118 2.31e-19 84.3
MS.gene41026.t1 AT3G58100 40.000 100 56 1 380 479 108 203 3.57e-19 87.4
MS.gene41026.t1 AT5G63225 46.067 89 47 1 391 479 23 110 8.12e-19 82.4
MS.gene41026.t1 AT5G53600 41.379 87 49 1 391 477 27 111 9.76e-19 82.0
MS.gene41026.t1 AT4G09462 40.230 87 51 1 391 477 27 112 1.83e-18 81.6
MS.gene41026.t1 AT1G69295 52.564 78 35 2 393 470 21 96 2.30e-18 84.3
MS.gene41026.t1 AT5G53610 43.529 85 46 1 393 477 28 110 2.79e-18 80.9
MS.gene41026.t1 AT5G08000 44.828 87 47 1 392 478 20 105 2.94e-18 83.2
MS.gene41026.t1 AT1G66852 42.697 89 46 2 389 475 22 107 2.96e-18 80.9
MS.gene41026.t1 AT1G69295 52.564 78 35 2 393 470 17 92 3.68e-18 83.6
MS.gene41026.t1 AT4G09465 39.080 87 52 1 391 477 29 114 5.78e-18 80.1
MS.gene41026.t1 AT4G09467 39.080 87 52 1 391 477 29 114 6.57e-18 80.1
MS.gene41026.t1 AT4G09464 39.080 87 52 1 391 477 29 114 6.57e-18 80.1
MS.gene41026.t1 AT1G26450 57.812 64 26 1 402 465 29 91 2.97e-17 80.5
MS.gene41026.t1 AT4G16165 34.831 89 58 0 389 477 22 110 4.78e-17 77.4
MS.gene41026.t1 AT4G09090 40.000 85 50 1 393 477 31 114 6.78e-17 77.0
MS.gene41026.t1 AT5G63230 39.175 97 58 1 383 479 16 111 1.57e-16 75.9
MS.gene41026.t1 AT4G09466 37.079 89 55 1 391 479 29 116 1.71e-16 75.9
MS.gene41026.t1 AT5G63240 36.559 93 56 2 387 477 35 126 2.70e-15 72.8
MS.gene41026.t1 AT2G43670 32.979 94 61 1 382 475 24 115 6.75e-14 68.6
MS.gene41026.t1 AT2G29735 37.234 94 55 3 386 477 25 116 1.08e-13 68.2
MS.gene41026.t1 AT2G03505 40.278 72 42 1 392 463 20 90 3.74e-13 66.6
MS.gene41026.t1 AT1G13830 40.541 74 43 1 390 463 32 104 4.80e-13 68.6
MS.gene41026.t1 AT2G03505 37.975 79 48 1 392 470 20 97 5.01e-13 67.4
MS.gene41026.t1 AT2G03505 37.975 79 48 1 392 470 20 97 5.01e-13 67.4
MS.gene41026.t1 AT2G03505 37.975 79 48 1 392 470 20 97 5.01e-13 67.4
MS.gene41026.t1 AT1G78520 33.696 92 59 1 386 477 25 114 1.35e-12 64.7
MS.gene41026.t1 AT1G13830 40.845 71 41 1 393 463 21 90 1.85e-12 66.6
MS.gene41026.t1 AT2G42930 38.462 78 46 2 393 470 40 115 3.16e-11 61.6

Find 126 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACCGGTTCTTATTTAA+TGG 0.191315 1.3:+41536765 MS.gene41026:CDS
AACCCTGGTGTTGTTGATTC+TGG 0.308011 1.3:+41536862 MS.gene41026:CDS
AGTGGGTCCTTAGGTCTTAA+AGG 0.308358 1.3:-41537096 None:intergenic
GATATTCCGTTGACGGTGTC+GGG 0.310583 1.3:+41537219 MS.gene41026:CDS
GCATGTGCCTCTAAAGTATT+AGG 0.319759 1.3:-41537492 None:intergenic
TTACAATCCTAATACTTTAG+AGG 0.320955 1.3:+41537485 MS.gene41026:CDS
AAAAGCTCTACTACCTTTGA+TGG 0.322339 1.3:-41536313 None:intergenic
AAGATAACTGTTTCTGAAAC+GGG 0.336859 1.3:+41536970 MS.gene41026:CDS
GTGTCGGTTGTGGAGAATAA+AGG 0.342273 1.3:+41537345 MS.gene41026:CDS
GTGTGGCGGGGTAGTGGTTA+AGG 0.353337 1.3:-41536501 None:intergenic
CAGGCTCCAGTGGCGGGTGT+AGG 0.355833 1.3:+41537291 MS.gene41026:CDS
GGGGTAGTGGTTAAGGATGT+TGG 0.358288 1.3:-41536494 None:intergenic
ACAATGGTAATTTAGTGAAA+AGG 0.373660 1.3:+41537052 MS.gene41026:CDS
GTGGGTCCTTAGGTCTTAAA+GGG 0.373757 1.3:-41537095 None:intergenic
GAAACGGGGTGGCCTTCATT+AGG 0.383994 1.3:+41536985 MS.gene41026:CDS
TGCAGACATGGCAGCATTAA+CGG 0.384911 1.3:-41536929 None:intergenic
AGATTGAAATCTGTTTATCT+AGG 0.386233 1.3:-41536633 None:intergenic
CAATGGTAATTTAGTGAAAA+GGG 0.390826 1.3:+41537053 MS.gene41026:CDS
CAAAACCGAACTTGTTGAAC+CGG 0.392666 1.3:+41536714 MS.gene41026:CDS
GCGGAGGAGAGAAGCTCATT+TGG 0.394223 1.3:-41536433 None:intergenic
AAGCATAGAGTGAGAGGAAA+AGG 0.394717 1.3:-41536069 None:intergenic
TCACTCTATGCTTCATCATC+AGG 0.406884 1.3:+41536079 MS.gene41026:CDS
CACGTGGCACCGGGTTGAAT+CGG 0.407032 1.3:-41537462 None:intergenic
AGGCTCCAGTGGCGGGTGTA+GGG 0.407629 1.3:+41537292 MS.gene41026:CDS
TCTTCTTACCCTACCTCAAC+CGG 0.409837 1.3:+41536685 MS.gene41026:CDS
CGCCACCGTGTTAACCGCTT+TGG 0.412897 1.3:+41536378 MS.gene41026:CDS
CTATTTGTGTGGCGGGGTAG+TGG 0.421711 1.3:-41536507 None:intergenic
TCGGCTCAGGCTCCAGTGGC+GGG 0.422421 1.3:+41537285 MS.gene41026:CDS
GTCTCCAGTGGAGTCGGCTC+AGG 0.424633 1.3:+41537272 MS.gene41026:CDS
AGGAGCAAGGTGCCGGTTAG+TGG 0.431748 1.3:+41537315 MS.gene41026:CDS
TTTAATGAGAATCAGAAAAC+GGG 0.435089 1.3:+41537141 MS.gene41026:CDS
CATGGCGGGTACGAGGTAGT+TGG 0.438364 1.3:-41536578 None:intergenic
ATTAACCATTAAATAAGAAC+CGG 0.439329 1.3:-41536770 None:intergenic
AATAACCGGTTCAACAAGTT+CGG 0.440240 1.3:-41536719 None:intergenic
TAAGATAACTGTTTCTGAAA+CGG 0.441815 1.3:+41536969 MS.gene41026:CDS
ATGGCTTCTATTTGTGTGGC+GGG 0.443354 1.3:-41536514 None:intergenic
TGATATTCCGTTGACGGTGT+CGG 0.448423 1.3:+41537218 MS.gene41026:CDS
CAAACATGGTGTGTGGCTAA+TGG 0.451034 1.3:+41537369 MS.gene41026:CDS
TGTAAAGCAGACAGTGCTAT+AGG 0.451896 1.3:-41536661 None:intergenic
TCGAGCATCGGTTTAATAAC+CGG 0.453310 1.3:-41536733 None:intergenic
GGAGCCTGAGCCGACTCCAC+TGG 0.453434 1.3:-41537276 None:intergenic
GGAAAATGCGATTTCCCTAC+AGG 0.454025 1.3:+41537732 MS.gene41026:CDS
TGGTGGTGAGGTGTCGGTTG+TGG 0.457648 1.3:+41537335 MS.gene41026:CDS
GGTTTATGATATTCCGTTGA+CGG 0.461054 1.3:+41537212 MS.gene41026:CDS
GACACCTCACCACCACTAAC+CGG 0.464259 1.3:-41537327 None:intergenic
CTCCTCCCTACACCCGCCAC+TGG 0.465357 1.3:-41537297 None:intergenic
AAGAAGAATGAGAATGCAAA+AGG 0.478035 1.3:-41536046 None:intergenic
GTCGGCTCAGGCTCCAGTGG+CGG 0.479071 1.3:+41537284 MS.gene41026:CDS
CCGTCCTTTCAGTATCCTGT+AGG 0.484302 1.3:-41537747 None:intergenic
TTAGGTGATAGCAATGAGAT+TGG 0.486029 1.3:+41537003 MS.gene41026:CDS
CTCGAGTTTCTACGTCAAAC+CGG 0.491307 1.3:+41536751 MS.gene41026:CDS
AACACATTAAGTGGGTCCTT+AGG 0.493965 1.3:-41537105 None:intergenic
TGTAGGGAGGAGCAAGGTGC+CGG 0.498642 1.3:+41537308 MS.gene41026:CDS
CCTTCAGAAGCAGGATCTAT+CGG 0.500943 1.3:+41536253 MS.gene41026:intron
AGGATTGTAACACGTGGCAC+CGG 0.506749 1.3:-41537472 None:intergenic
AGTGGTTAAGGATGTTGGAT+TGG 0.509507 1.3:-41536489 None:intergenic
TGTCGGTTGTGGAGAATAAA+GGG 0.512577 1.3:+41537346 MS.gene41026:CDS
CTTGATTATGCGTGTGGAGA+AGG 0.515090 1.3:+41537423 MS.gene41026:CDS
CGTCCTTTCAGTATCCTGTA+GGG 0.516470 1.3:-41537746 None:intergenic
TTGAATGAACCGGTTGAGGT+AGG 0.527736 1.3:-41536694 None:intergenic
CTACCTTTGATGGTGTTGGT+AGG 0.530906 1.3:-41536303 None:intergenic
TCTACTACCTTTGATGGTGT+TGG 0.531152 1.3:-41536307 None:intergenic
CTCCAGTGGCGGGTGTAGGG+AGG 0.533461 1.3:+41537295 MS.gene41026:CDS
TGAATGAACCGGTTGAGGTA+GGG 0.534233 1.3:-41536693 None:intergenic
AGCGGTTAACACGGTGGCGT+CGG 0.540177 1.3:-41536374 None:intergenic
AGCGGAGTCTCCAGTGGAGT+CGG 0.551724 1.3:+41537266 MS.gene41026:CDS
CGCGTGTTTCAACTTCTCCT+CGG 0.553023 1.3:-41537400 None:intergenic
AATGGCTTCTATTTGTGTGG+CGG 0.558913 1.3:-41536515 None:intergenic
AGCAATGGCTTCTATTTGTG+TGG 0.560482 1.3:-41536518 None:intergenic
TCCACTGGAGACTCCGCTAT+CGG 0.564392 1.3:-41537261 None:intergenic
CAAATAGAAGCCATTGCTGT+CGG 0.564939 1.3:+41536523 MS.gene41026:CDS
GACAATGCTGCTTCTTACAA+TGG 0.568229 1.3:+41537036 MS.gene41026:CDS
ATCATATTGAAGTGCAGACA+TGG 0.572922 1.3:-41536941 None:intergenic
TAACCTACCAACACCATCAA+AGG 0.573834 1.3:+41536300 MS.gene41026:CDS
AACCTCGTTTCCGACAGCAA+TGG 0.574493 1.3:-41536533 None:intergenic
ATCAATCCTACACCGACACA+TGG 0.575276 1.3:+41536464 MS.gene41026:CDS
GGATTGATCGGCTGCAGCGG+AGG 0.575307 1.3:-41536449 None:intergenic
TGGGACCCCTTTAAGACCTA+AGG 0.575353 1.3:+41537089 MS.gene41026:CDS
GGATTGTAACACGTGGCACC+GGG 0.577708 1.3:-41537471 None:intergenic
TGTGTCGGTGTAGGATTGAT+CGG 0.579882 1.3:-41536461 None:intergenic
ATAGTAACTATTGAAAGCAA+AGG 0.580352 1.3:-41537517 None:intergenic
TGGAGAATAAAGGGCAAACA+TGG 0.581967 1.3:+41537355 MS.gene41026:CDS
TCATTGCTATCACCTAATGA+AGG 0.582242 1.3:-41536997 None:intergenic
AAGCTCATTTGGCATGGCGA+CGG 0.590723 1.3:-41536422 None:intergenic
GGCGACGGTGACTTTGATGC+CGG 0.592716 1.3:-41536407 None:intergenic
GGATCTATCGGAATCAACTA+CGG 0.594084 1.3:+41536265 MS.gene41026:CDS
TGACGTAGAAACTCGAGCAT+CGG 0.596414 1.3:-41536745 None:intergenic
TCAATCTTCGACACCGATAG+CGG 0.597503 1.3:+41537248 MS.gene41026:CDS
GGTTAGTGGTGGTGAGGTGT+CGG 0.598074 1.3:+41537329 MS.gene41026:CDS
CACGCGCTTGATTATGCGTG+TGG 0.600048 1.3:+41537417 MS.gene41026:CDS
ATGATGAAGCATAGAGTGAG+AGG 0.602479 1.3:-41536075 None:intergenic
TTAACCGCTTTGGCAAACTC+CGG 0.602683 1.3:+41536388 MS.gene41026:CDS
GGAGTCGGCTCAGGCTCCAG+TGG 0.604252 1.3:+41537281 MS.gene41026:CDS
TTGGATCCATGTGTCGGTGT+AGG 0.604328 1.3:-41536470 None:intergenic
ATATTCCGTTGACGGTGTCG+GGG 0.608035 1.3:+41537220 MS.gene41026:CDS
TTAGTCCCCGACACCGTCAA+CGG 0.610826 1.3:-41537225 None:intergenic
AGCAAGGTGCCGGTTAGTGG+TGG 0.611606 1.3:+41537318 MS.gene41026:CDS
GGCGGGTGTAGGGAGGAGCA+AGG 0.613272 1.3:+41537302 MS.gene41026:CDS
GCTTTGTTTAAGCAAAACCC+TGG 0.613711 1.3:+41536847 MS.gene41026:CDS
GATAGCAATGAGATTGGTGC+TGG 0.613914 1.3:+41537009 MS.gene41026:CDS
GGAGAGAAGCTCATTTGGCA+TGG 0.616987 1.3:-41536428 None:intergenic
GATTATGCGTGTGGAGAAGG+TGG 0.619300 1.3:+41537426 MS.gene41026:CDS
CGGTGTCGTAAAGCTTTACA+CGG 0.619313 1.3:-41536354 None:intergenic
TTACCAGAATCAACAACACC+AGG 0.620171 1.3:-41536865 None:intergenic
GATTGTGCGCCGATTCAACC+CGG 0.620487 1.3:+41537453 MS.gene41026:CDS
GTAGGATTGATCGGCTGCAG+CGG 0.624638 1.3:-41536452 None:intergenic
GTTTGCCAAAGCGGTTAACA+CGG 0.626215 1.3:-41536383 None:intergenic
ACCGATAGCGGAGTCTCCAG+TGG 0.629203 1.3:+41537260 MS.gene41026:CDS
TGGCTTCTATTTGTGTGGCG+GGG 0.633456 1.3:-41536513 None:intergenic
AGCCATTGCTGTCGGAAACG+AGG 0.633469 1.3:+41536531 MS.gene41026:CDS
TACTATCAGAAGAAGTCACG+TGG 0.652788 1.3:+41537534 MS.gene41026:CDS
GGCTAATGGTGGTTATTCCG+AGG 0.655740 1.3:+41537383 MS.gene41026:CDS
TAAAGGGCAAACATGGTGTG+TGG 0.657690 1.3:+41537362 MS.gene41026:CDS
GGTGCCGGTTAGTGGTGGTG+AGG 0.658825 1.3:+41537323 MS.gene41026:CDS
GTTGGATTGGATCCATGTGT+CGG 0.659166 1.3:-41536476 None:intergenic
GATGCCGGAGTTTGCCAAAG+CGG 0.665378 1.3:-41536392 None:intergenic
ACTATCAGAAGAAGTCACGT+GGG 0.674383 1.3:+41537535 MS.gene41026:CDS
AGATAACTGTTTCTGAAACG+GGG 0.677287 1.3:+41536971 MS.gene41026:CDS
ACATGGTGTGTGGCTAATGG+TGG 0.680145 1.3:+41537372 MS.gene41026:CDS
TGCCAAAGCGGTTAACACGG+TGG 0.680941 1.3:-41536380 None:intergenic
CTATCAGAAGAAGTCACGTG+GGG 0.684529 1.3:+41537536 MS.gene41026:CDS
TGGGTCCTTAGGTCTTAAAG+GGG 0.695922 1.3:-41537094 None:intergenic
TACCAGAATCAACAACACCA+GGG 0.704518 1.3:-41536864 None:intergenic
TAACTGTTTCTGAAACGGGG+TGG 0.710054 1.3:+41536974 MS.gene41026:CDS
AGTATTAGGATTGTAACACG+TGG 0.748589 1.3:-41537478 None:intergenic
TATCAGAAGAAGTCACGTGG+GGG 0.768703 1.3:+41537537 MS.gene41026:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTACAAAAAATACAT+TGG - chr1.3:41537650-41537669 None:intergenic 10.0%
!! GGCAAAAAAAATTAATAATA+AGG - chr1.3:41537619-41537638 None:intergenic 15.0%
!! ACAAAATAAAATAGAAAGAG+AGG - chr1.3:41536120-41536139 None:intergenic 20.0%
!! ATTAACCATTAAATAAGAAC+CGG - chr1.3:41536773-41536792 None:intergenic 20.0%
!! ATTAATAATAAGGACTTACT+TGG - chr1.3:41537609-41537628 None:intergenic 20.0%
!! CAAATAAAAACACATTAAGT+GGG - chr1.3:41537116-41537135 None:intergenic 20.0%
!!! AAAAATACATTGGTTGATAT+AGG - chr1.3:41537640-41537659 None:intergenic 20.0%
!!! TTTTAATGAGAATCAGAAAA+CGG + chr1.3:41537140-41537159 MS.gene41026:CDS 20.0%
! ACAATGGTAATTTAGTGAAA+AGG + chr1.3:41537052-41537071 MS.gene41026:CDS 25.0%
! AGATTGAAATCTGTTTATCT+AGG - chr1.3:41536636-41536655 None:intergenic 25.0%
! ATAGTAACTATTGAAAGCAA+AGG - chr1.3:41537520-41537539 None:intergenic 25.0%
! CAATGGTAATTTAGTGAAAA+GGG + chr1.3:41537053-41537072 MS.gene41026:CDS 25.0%
! GCAAATAAAAACACATTAAG+TGG - chr1.3:41537117-41537136 None:intergenic 25.0%
! GGTTATTTGACCTAAAAATA+TGG + chr1.3:41536196-41536215 MS.gene41026:intron 25.0%
! TTACAATCCTAATACTTTAG+AGG + chr1.3:41537485-41537504 MS.gene41026:CDS 25.0%
! TTTAATGAGAATCAGAAAAC+GGG + chr1.3:41537141-41537160 MS.gene41026:CDS 25.0%
!! ATCATGTCAACCATATTTTT+AGG - chr1.3:41536209-41536228 None:intergenic 25.0%
!! TTTTATGAATCTTTGTTGCA+GGG + chr1.3:41537706-41537725 MS.gene41026:intron 25.0%
!!! AAGTACAATTCAGTTGATAA+CGG + chr1.3:41536145-41536164 MS.gene41026:intron 25.0%
!!! GTTTATCTAGGTTTTGTTTT+TGG - chr1.3:41536624-41536643 None:intergenic 25.0%
!!! TAAGATAACTGTTTCTGAAA+CGG + chr1.3:41536969-41536988 MS.gene41026:CDS 25.0%
AAGAAGAATGAGAATGCAAA+AGG - chr1.3:41536049-41536068 None:intergenic 30.0%
TAGCAGCATAAGCAAAAAAA+GGG - chr1.3:41536801-41536820 None:intergenic 30.0%
TTAGCAGCATAAGCAAAAAA+AGG - chr1.3:41536802-41536821 None:intergenic 30.0%
! ACCATAATTTTTCTCAGAAG+TGG - chr1.3:41537169-41537188 None:intergenic 30.0%
! ATTTTACCCTACTGAGAAAA+AGG + chr1.3:41537191-41537210 MS.gene41026:CDS 30.0%
! CATAAACCTTTTTCTCAGTA+GGG - chr1.3:41537200-41537219 None:intergenic 30.0%
! CCATAATTTTTCTCAGAAGT+GGG - chr1.3:41537168-41537187 None:intergenic 30.0%
! GTTTTATGAATCTTTGTTGC+AGG + chr1.3:41537705-41537724 MS.gene41026:intron 30.0%
! TCAAACCGGTTCTTATTTAA+TGG + chr1.3:41536765-41536784 MS.gene41026:CDS 30.0%
! TCATAAACCTTTTTCTCAGT+AGG - chr1.3:41537201-41537220 None:intergenic 30.0%
!! AAGATAACTGTTTCTGAAAC+GGG + chr1.3:41536970-41536989 MS.gene41026:CDS 30.0%
!!! TTAGTGAAAAGGGTTTTGAA+TGG + chr1.3:41537063-41537082 MS.gene41026:CDS 30.0%
AAAAGCTCTACTACCTTTGA+TGG - chr1.3:41536316-41536335 None:intergenic 35.0%
AGTATTAGGATTGTAACACG+TGG - chr1.3:41537481-41537500 None:intergenic 35.0%
ATCATATTGAAGTGCAGACA+TGG - chr1.3:41536944-41536963 None:intergenic 35.0%
GGTTTATGATATTCCGTTGA+CGG + chr1.3:41537212-41537231 MS.gene41026:CDS 35.0%
TCATTGCTATCACCTAATGA+AGG - chr1.3:41537000-41537019 None:intergenic 35.0%
TTAGGTGATAGCAATGAGAT+TGG + chr1.3:41537003-41537022 MS.gene41026:CDS 35.0%
! AATAACCGGTTCAACAAGTT+CGG - chr1.3:41536722-41536741 None:intergenic 35.0%
! CAAGATCTATTTCTCGCATT+AGG + chr1.3:41536175-41536194 MS.gene41026:intron 35.0%
! CCCACTTCTGAGAAAAATTA+TGG + chr1.3:41537165-41537184 MS.gene41026:CDS 35.0%
!! AGAAGCATGAACGTTTTTCA+TGG - chr1.3:41536599-41536618 None:intergenic 35.0%
!! AGATAACTGTTTCTGAAACG+GGG + chr1.3:41536971-41536990 MS.gene41026:CDS 35.0%
!!! AAAAGGGTTTTGAATGGAAG+TGG + chr1.3:41537069-41537088 MS.gene41026:CDS 35.0%
!!! AAAGGGTTTTGAATGGAAGT+GGG + chr1.3:41537070-41537089 MS.gene41026:CDS 35.0%
!!! AAGTTCGGTTTTGAATGAAC+CGG - chr1.3:41536707-41536726 None:intergenic 35.0%
AACACATTAAGTGGGTCCTT+AGG - chr1.3:41537108-41537127 None:intergenic 40.0%
AAGCATAGAGTGAGAGGAAA+AGG - chr1.3:41536072-41536091 None:intergenic 40.0%
AATGGCTTCTATTTGTGTGG+CGG - chr1.3:41536518-41536537 None:intergenic 40.0%
ACTATCAGAAGAAGTCACGT+GGG + chr1.3:41537535-41537554 MS.gene41026:CDS 40.0%
AGCAATGGCTTCTATTTGTG+TGG - chr1.3:41536521-41536540 None:intergenic 40.0%
AGTGGTTAAGGATGTTGGAT+TGG - chr1.3:41536492-41536511 None:intergenic 40.0%
ATGATGAAGCATAGAGTGAG+AGG - chr1.3:41536078-41536097 None:intergenic 40.0%
CAAATAGAAGCCATTGCTGT+CGG + chr1.3:41536523-41536542 MS.gene41026:CDS 40.0%
GGATCTATCGGAATCAACTA+CGG + chr1.3:41536265-41536284 MS.gene41026:CDS 40.0%
TAACCTACCAACACCATCAA+AGG + chr1.3:41536300-41536319 MS.gene41026:CDS 40.0%
TACCAGAATCAACAACACCA+GGG - chr1.3:41536867-41536886 None:intergenic 40.0%
TACTATCAGAAGAAGTCACG+TGG + chr1.3:41537534-41537553 MS.gene41026:CDS 40.0%
TCACTCTATGCTTCATCATC+AGG + chr1.3:41536079-41536098 MS.gene41026:CDS 40.0%
TGAATCTTTGTTGCAGGGTA+TGG + chr1.3:41537711-41537730 MS.gene41026:intron 40.0%
TGGAGAATAAAGGGCAAACA+TGG + chr1.3:41537355-41537374 MS.gene41026:CDS 40.0%
TGTAAAGCAGACAGTGCTAT+AGG - chr1.3:41536664-41536683 None:intergenic 40.0%
TTACCAGAATCAACAACACC+AGG - chr1.3:41536868-41536887 None:intergenic 40.0%
! AGCATGAACGTTTTTCATGG+CGG - chr1.3:41536596-41536615 None:intergenic 40.0%
! AGGTAGTTGGTCGTGTTTTT+CGG - chr1.3:41536568-41536587 None:intergenic 40.0%
! GACAATGCTGCTTCTTACAA+TGG + chr1.3:41537036-41537055 MS.gene41026:CDS 40.0%
! TGTCGGTTGTGGAGAATAAA+GGG + chr1.3:41537346-41537365 MS.gene41026:CDS 40.0%
! TTTTTCTCACCTTCAGAAGC+AGG + chr1.3:41536244-41536263 MS.gene41026:intron 40.0%
!! CAAAACCGAACTTGTTGAAC+CGG + chr1.3:41536714-41536733 MS.gene41026:CDS 40.0%
!! GCATGTGCCTCTAAAGTATT+AGG - chr1.3:41537495-41537514 None:intergenic 40.0%
!! GCTTTGTTTAAGCAAAACCC+TGG + chr1.3:41536847-41536866 MS.gene41026:CDS 40.0%
!! GTAGAGCTTTTGAAAGCACA+AGG + chr1.3:41536325-41536344 MS.gene41026:CDS 40.0%
!! TCGAGCATCGGTTTAATAAC+CGG - chr1.3:41536736-41536755 None:intergenic 40.0%
!! TCTACTACCTTTGATGGTGT+TGG - chr1.3:41536310-41536329 None:intergenic 40.0%
AGTGGGTCCTTAGGTCTTAA+AGG - chr1.3:41537099-41537118 None:intergenic 45.0%
ATCAATCCTACACCGACACA+TGG + chr1.3:41536464-41536483 MS.gene41026:CDS 45.0%
ATGGCTTCTATTTGTGTGGC+GGG - chr1.3:41536517-41536536 None:intergenic 45.0%
CAAACATGGTGTGTGGCTAA+TGG + chr1.3:41537369-41537388 MS.gene41026:CDS 45.0%
CCTTCAGAAGCAGGATCTAT+CGG + chr1.3:41536253-41536272 MS.gene41026:intron 45.0%
CTATCAGAAGAAGTCACGTG+GGG + chr1.3:41537536-41537555 MS.gene41026:CDS 45.0%
CTCGAGTTTCTACGTCAAAC+CGG + chr1.3:41536751-41536770 MS.gene41026:CDS 45.0%
CTTGATTATGCGTGTGGAGA+AGG + chr1.3:41537423-41537442 MS.gene41026:CDS 45.0%
GATAGCAATGAGATTGGTGC+TGG + chr1.3:41537009-41537028 MS.gene41026:CDS 45.0%
GGAAAATGCGATTTCCCTAC+AGG + chr1.3:41537732-41537751 MS.gene41026:CDS 45.0%
GTGGGTCCTTAGGTCTTAAA+GGG - chr1.3:41537098-41537117 None:intergenic 45.0%
GTTTGCCAAAGCGGTTAACA+CGG - chr1.3:41536386-41536405 None:intergenic 45.0%
TAAAGGGCAAACATGGTGTG+TGG + chr1.3:41537362-41537381 MS.gene41026:CDS 45.0%
TATCAGAAGAAGTCACGTGG+GGG + chr1.3:41537537-41537556 MS.gene41026:CDS 45.0%
TCAATCTTCGACACCGATAG+CGG + chr1.3:41537248-41537267 MS.gene41026:CDS 45.0%
TCTTCTTACCCTACCTCAAC+CGG + chr1.3:41536685-41536704 MS.gene41026:CDS 45.0%
TGAATGAACCGGTTGAGGTA+GGG - chr1.3:41536696-41536715 None:intergenic 45.0%
TGACGTAGAAACTCGAGCAT+CGG - chr1.3:41536748-41536767 None:intergenic 45.0%
TGATATTCCGTTGACGGTGT+CGG + chr1.3:41537218-41537237 MS.gene41026:CDS 45.0%
TGCAGACATGGCAGCATTAA+CGG - chr1.3:41536932-41536951 None:intergenic 45.0%
TGGGTCCTTAGGTCTTAAAG+GGG - chr1.3:41537097-41537116 None:intergenic 45.0%
TTAACCGCTTTGGCAAACTC+CGG + chr1.3:41536388-41536407 MS.gene41026:CDS 45.0%
TTGAATGAACCGGTTGAGGT+AGG - chr1.3:41536697-41536716 None:intergenic 45.0%
! GCATGAACGTTTTTCATGGC+GGG - chr1.3:41536595-41536614 None:intergenic 45.0%
! GGTAGTTGGTCGTGTTTTTC+GGG - chr1.3:41536567-41536586 None:intergenic 45.0%
! GTTGGATTGGATCCATGTGT+CGG - chr1.3:41536479-41536498 None:intergenic 45.0%
! TGTGTCGGTGTAGGATTGAT+CGG - chr1.3:41536464-41536483 None:intergenic 45.0%
!! AACCCTGGTGTTGTTGATTC+TGG + chr1.3:41536862-41536881 MS.gene41026:CDS 45.0%
!! CGGTGTCGTAAAGCTTTACA+CGG - chr1.3:41536357-41536376 None:intergenic 45.0%
!! CTACCTTTGATGGTGTTGGT+AGG - chr1.3:41536306-41536325 None:intergenic 45.0%
!! GTGTCGGTTGTGGAGAATAA+AGG + chr1.3:41537345-41537364 MS.gene41026:CDS 45.0%
!! TAACTGTTTCTGAAACGGGG+TGG + chr1.3:41536974-41536993 MS.gene41026:CDS 45.0%
!!! GGTTTTGAATGAACCGGTTG+AGG - chr1.3:41536701-41536720 None:intergenic 45.0%
AACCTCGTTTCCGACAGCAA+TGG - chr1.3:41536536-41536555 None:intergenic 50.0%
AAGCTCATTTGGCATGGCGA+CGG - chr1.3:41536425-41536444 None:intergenic 50.0%
ACATGGTGTGTGGCTAATGG+TGG + chr1.3:41537372-41537391 MS.gene41026:CDS 50.0%
AGGATTGTAACACGTGGCAC+CGG - chr1.3:41537475-41537494 None:intergenic 50.0%
CCGATAGATCCTGCTTCTGA+AGG - chr1.3:41536256-41536275 None:intergenic 50.0%
CGCGTGTTTCAACTTCTCCT+CGG - chr1.3:41537403-41537422 None:intergenic 50.0%
GATATTCCGTTGACGGTGTC+GGG + chr1.3:41537219-41537238 MS.gene41026:CDS 50.0%
GATTATGCGTGTGGAGAAGG+TGG + chr1.3:41537426-41537445 MS.gene41026:CDS 50.0%
GGAGAGAAGCTCATTTGGCA+TGG - chr1.3:41536431-41536450 None:intergenic 50.0%
GGCTAATGGTGGTTATTCCG+AGG + chr1.3:41537383-41537402 MS.gene41026:CDS 50.0%
TGGCTTCTATTTGTGTGGCG+GGG - chr1.3:41536516-41536535 None:intergenic 50.0%
! ATATTCCGTTGACGGTGTCG+GGG + chr1.3:41537220-41537239 MS.gene41026:CDS 50.0%
! GGGGTAGTGGTTAAGGATGT+TGG - chr1.3:41536497-41536516 None:intergenic 50.0%
! TTGGATCCATGTGTCGGTGT+AGG - chr1.3:41536473-41536492 None:intergenic 50.0%
!! TGGGACCCCTTTAAGACCTA+AGG + chr1.3:41537089-41537108 MS.gene41026:CDS 50.0%
AGCCATTGCTGTCGGAAACG+AGG + chr1.3:41536531-41536550 MS.gene41026:CDS 55.0%
CACGCGCTTGATTATGCGTG+TGG + chr1.3:41537417-41537436 MS.gene41026:CDS 55.0%
GAAACGGGGTGGCCTTCATT+AGG + chr1.3:41536985-41537004 MS.gene41026:CDS 55.0%
GACACCTCACCACCACTAAC+CGG - chr1.3:41537330-41537349 None:intergenic 55.0%
GATGCCGGAGTTTGCCAAAG+CGG - chr1.3:41536395-41536414 None:intergenic 55.0%
GCGGAGGAGAGAAGCTCATT+TGG - chr1.3:41536436-41536455 None:intergenic 55.0%
GGATTGTAACACGTGGCACC+GGG - chr1.3:41537474-41537493 None:intergenic 55.0%
GTAGGATTGATCGGCTGCAG+CGG - chr1.3:41536455-41536474 None:intergenic 55.0%
TCCACTGGAGACTCCGCTAT+CGG - chr1.3:41537264-41537283 None:intergenic 55.0%
TGCCAAAGCGGTTAACACGG+TGG - chr1.3:41536383-41536402 None:intergenic 55.0%
TTAGTCCCCGACACCGTCAA+CGG - chr1.3:41537228-41537247 None:intergenic 55.0%
! CTATTTGTGTGGCGGGGTAG+TGG - chr1.3:41536510-41536529 None:intergenic 55.0%
! GGTGGCACGTGTGATTTTGG+TGG + chr1.3:41537558-41537577 MS.gene41026:CDS 55.0%
! GGTTAGTGGTGGTGAGGTGT+CGG + chr1.3:41537329-41537348 MS.gene41026:CDS 55.0%
!! GATTGTGCGCCGATTCAACC+CGG + chr1.3:41537453-41537472 MS.gene41026:CDS 55.0%
!!! CGTTTTTCATGGCGGGTACG+AGG - chr1.3:41536588-41536607 None:intergenic 55.0%
AGCGGAGTCTCCAGTGGAGT+CGG + chr1.3:41537266-41537285 MS.gene41026:CDS 60.0%
AGCGGTTAACACGGTGGCGT+CGG - chr1.3:41536377-41536396 None:intergenic 60.0%
CAGAAGAAGTCACGTGGGGG+TGG + chr1.3:41537540-41537559 MS.gene41026:CDS 60.0%
CGCCACCGTGTTAACCGCTT+TGG + chr1.3:41536378-41536397 MS.gene41026:CDS 60.0%
GGCGACGGTGACTTTGATGC+CGG - chr1.3:41536410-41536429 None:intergenic 60.0%
TGTAGGGAGGAGCAAGGTGC+CGG + chr1.3:41537308-41537327 MS.gene41026:CDS 60.0%
! CACGTGGCACCGGGTTGAAT+CGG - chr1.3:41537465-41537484 None:intergenic 60.0%
! GGGGGTGGCACGTGTGATTT+TGG + chr1.3:41537555-41537574 MS.gene41026:CDS 60.0%
! GTGTGGCGGGGTAGTGGTTA+AGG - chr1.3:41536504-41536523 None:intergenic 60.0%
!! ACCGATAGCGGAGTCTCCAG+TGG + chr1.3:41537260-41537279 MS.gene41026:CDS 60.0%
!! AGCAAGGTGCCGGTTAGTGG+TGG + chr1.3:41537318-41537337 MS.gene41026:CDS 60.0%
!! AGGAGCAAGGTGCCGGTTAG+TGG + chr1.3:41537315-41537334 MS.gene41026:CDS 60.0%
!! CATGGCGGGTACGAGGTAGT+TGG - chr1.3:41536581-41536600 None:intergenic 60.0%
!! TGGTGGTGAGGTGTCGGTTG+TGG + chr1.3:41537335-41537354 MS.gene41026:CDS 60.0%
GGATTGATCGGCTGCAGCGG+AGG - chr1.3:41536452-41536471 None:intergenic 65.0%
! GTCTCCAGTGGAGTCGGCTC+AGG + chr1.3:41537272-41537291 MS.gene41026:CDS 65.0%
!! AGGCTCCAGTGGCGGGTGTA+GGG + chr1.3:41537292-41537311 MS.gene41026:CDS 65.0%
!! GGTGCCGGTTAGTGGTGGTG+AGG + chr1.3:41537323-41537342 MS.gene41026:CDS 65.0%
CTCCTCCCTACACCCGCCAC+TGG - chr1.3:41537300-41537319 None:intergenic 70.0%
GGCGGGTGTAGGGAGGAGCA+AGG + chr1.3:41537302-41537321 MS.gene41026:CDS 70.0%
TCGGCTCAGGCTCCAGTGGC+GGG + chr1.3:41537285-41537304 MS.gene41026:CDS 70.0%
! GGAGCCTGAGCCGACTCCAC+TGG - chr1.3:41537279-41537298 None:intergenic 70.0%
! GGAGTCGGCTCAGGCTCCAG+TGG + chr1.3:41537281-41537300 MS.gene41026:CDS 70.0%
! GTCGGCTCAGGCTCCAGTGG+CGG + chr1.3:41537284-41537303 MS.gene41026:CDS 70.0%
!! CAGGCTCCAGTGGCGGGTGT+AGG + chr1.3:41537291-41537310 MS.gene41026:CDS 70.0%
!! CTCCAGTGGCGGGTGTAGGG+AGG + chr1.3:41537295-41537314 MS.gene41026:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 41536040 41537761 41536040 ID=MS.gene41026
chr1.3 mRNA 41536040 41537761 41536040 ID=MS.gene41026.t1;Parent=MS.gene41026
chr1.3 exon 41536040 41536100 41536040 ID=MS.gene41026.t1.exon1;Parent=MS.gene41026.t1
chr1.3 CDS 41536040 41536100 41536040 ID=cds.MS.gene41026.t1;Parent=MS.gene41026.t1
chr1.3 exon 41536260 41537609 41536260 ID=MS.gene41026.t1.exon2;Parent=MS.gene41026.t1
chr1.3 CDS 41536260 41537609 41536260 ID=cds.MS.gene41026.t1;Parent=MS.gene41026.t1
chr1.3 exon 41537727 41537761 41537727 ID=MS.gene41026.t1.exon3;Parent=MS.gene41026.t1
chr1.3 CDS 41537727 41537761 41537727 ID=cds.MS.gene41026.t1;Parent=MS.gene41026.t1
Gene Sequence

>MS.gene41026

ATGGCTCCTTTTGCATTCTCATTCTTCTTCCTTTTCCTCTCACTCTATGCTTCATCATCAGGTAAATCTATTAAATTCCTCTCTTTCTATTTTATTTTGTGTTGTAAGTACAATTCAGTTGATAACGGCATATATCAAGATCTATTTCTCGCATTAGGTTATTTGACCTAAAAATATGGTTGACATGATTTTTCTTTTCTTGTGTTTTTCTCACCTTCAGAAGCAGGATCTATCGGAATCAACTACGGTAGAATAGCTGATAACCTACCAACACCATCAAAGGTAGTAGAGCTTTTGAAAGCACAAGGTTTCAGCCGTGTAAAGCTTTACGACACCGACGCCACCGTGTTAACCGCTTTGGCAAACTCCGGCATCAAAGTCACCGTCGCCATGCCAAATGAGCTTCTCTCCTCCGCTGCAGCCGATCAATCCTACACCGACACATGGATCCAATCCAACATCCTTAACCACTACCCCGCCACACAAATAGAAGCCATTGCTGTCGGAAACGAGGTTTTCGTAGACCCGAAAAACACGACCAACTACCTCGTACCCGCCATGAAAAACGTTCATGCTTCTCTCCAAAAACAAAACCTAGATAAACAGATTTCAATCTCTTCACCTATAGCACTGTCTGCTTTACAATCTTCTTACCCTACCTCAACCGGTTCATTCAAAACCGAACTTGTTGAACCGGTTATTAAACCGATGCTCGAGTTTCTACGTCAAACCGGTTCTTATTTAATGGTTAATGCTTACCCTTTTTTTGCTTATGCTGCTAACTCAGACACAATCTCGTTAGATTATGCTTTGTTTAAGCAAAACCCTGGTGTTGTTGATTCTGGTAATCATTTGAAATATGATAATCTTTTCGACGCTCAAATCGACGCCGTTAATGCTGCCATGTCTGCACTTCAATATGATGATGTTAAGATAACTGTTTCTGAAACGGGGTGGCCTTCATTAGGTGATAGCAATGAGATTGGTGCTGGTCAAGACAATGCTGCTTCTTACAATGGTAATTTAGTGAAAAGGGTTTTGAATGGAAGTGGGACCCCTTTAAGACCTAAGGACCCACTTAATGTGTTTTTATTTGCTCTTTTTAATGAGAATCAGAAAACGGGTCCCACTTCTGAGAAAAATTATGGTTTATTTTACCCTACTGAGAAAAAGGTTTATGATATTCCGTTGACGGTGTCGGGGACTAATCAATCTTCGACACCGATAGCGGAGTCTCCAGTGGAGTCGGCTCAGGCTCCAGTGGCGGGTGTAGGGAGGAGCAAGGTGCCGGTTAGTGGTGGTGAGGTGTCGGTTGTGGAGAATAAAGGGCAAACATGGTGTGTGGCTAATGGTGGTTATTCCGAGGAGAAGTTGAAACACGCGCTTGATTATGCGTGTGGAGAAGGTGGAGCTGATTGTGCGCCGATTCAACCCGGTGCCACGTGTTACAATCCTAATACTTTAGAGGCACATGCTTCCTTTGCTTTCAATAGTTACTATCAGAAGAAGTCACGTGGGGGTGGCACGTGTGATTTTGGTGGTGCTGCTTATGTTGTTACACAAGCTCCAAGTAAGTCCTTATTATTAATTTTTTTTGCCTATATCAACCAATGTATTTTTTGTAAAAAATTTGCAATTTGCATGAGTGAAGAGTTTTTTAATTGTGTTTTATGAATCTTTGTTGCAGGGTATGGAAAATGCGATTTCCCTACAGGATACTGA
Protein sequence

>MS.gene41026.t1

MAPFAFSFFFLFLSLYASSSEAGSIGINYGRIADNLPTPSKVVELLKAQGFSRVKLYDTDATVLTALANSGIKVTVAMPNELLSSAAADQSYTDTWIQSNILNHYPATQIEAIAVGNEVFVDPKNTTNYLVPAMKNVHASLQKQNLDKQISISSPIALSALQSSYPTSTGSFKTELVEPVIKPMLEFLRQTGSYLMVNAYPFFAYAANSDTISLDYALFKQNPGVVDSGNHLKYDNLFDAQIDAVNAAMSALQYDDVKITVSETGWPSLGDSNEIGAGQDNAASYNGNLVKRVLNGSGTPLRPKDPLNVFLFALFNENQKTGPTSEKNYGLFYPTEKKVYDIPLTVSGTNQSSTPIAESPVESAQAPVAGVGRSKVPVSGGEVSVVENKGQTWCVANGGYSEEKLKHALDYACGEGGADCAPIQPGATCYNPNTLEAHASFAFNSYYQKKSRGGGTCDFGGAAYVVTQAPRYGKCDFPTGY