Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027748.t1 | XP_003613088.1 | 96.5 | 347 | 11 | 1 | 1 | 347 | 1 | 346 | 8.90E-186 | 659.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027748.t1 | Q8LGA1 | 48.5 | 324 | 135 | 9 | 1 | 317 | 1 | 299 | 4.3e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027748.t1 | G7JXR1 | 96.5 | 347 | 11 | 1 | 1 | 347 | 1 | 346 | 6.4e-186 | 659.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35752 | MS.gene027748 | PPI |
| MS.gene31553 | MS.gene027748 | PPI |
| MS.gene92988 | MS.gene027748 | PPI |
| MS.gene029573 | MS.gene027748 | PPI |
| MS.gene029005 | MS.gene027748 | PPI |
| MS.gene043340 | MS.gene027748 | PPI |
| MS.gene71698 | MS.gene027748 | PPI |
| MS.gene027748 | MS.gene065674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027748.t1 | MTR_5g032550 | 96.542 | 347 | 11 | 1 | 1 | 347 | 1 | 346 | 0.0 | 681 |
| MS.gene027748.t1 | MTR_5g032550 | 96.337 | 273 | 9 | 1 | 1 | 273 | 1 | 272 | 0.0 | 534 |
| MS.gene027748.t1 | MTR_8g068950 | 44.022 | 368 | 175 | 9 | 1 | 339 | 1 | 366 | 2.06e-93 | 283 |
| MS.gene027748.t1 | MTR_3g100710 | 50.139 | 361 | 151 | 12 | 1 | 339 | 1 | 354 | 1.17e-88 | 271 |
| MS.gene027748.t1 | MTR_4g080990 | 43.931 | 346 | 175 | 9 | 1 | 339 | 1 | 334 | 4.50e-83 | 256 |
| MS.gene027748.t1 | MTR_5g065830 | 46.416 | 293 | 142 | 6 | 59 | 337 | 54 | 345 | 7.73e-78 | 243 |
| MS.gene027748.t1 | MTR_3g100710 | 45.706 | 361 | 138 | 14 | 1 | 339 | 1 | 325 | 3.73e-67 | 214 |
| MS.gene027748.t1 | MTR_8g063120 | 40.741 | 243 | 136 | 3 | 55 | 293 | 56 | 294 | 4.11e-51 | 174 |
| MS.gene027748.t1 | MTR_8g063120 | 44.920 | 187 | 103 | 0 | 55 | 241 | 56 | 242 | 8.89e-51 | 171 |
| MS.gene027748.t1 | MTR_1g107535 | 35.570 | 298 | 179 | 4 | 60 | 346 | 73 | 368 | 5.56e-48 | 166 |
| MS.gene027748.t1 | MTR_5g035360 | 38.865 | 229 | 136 | 2 | 60 | 284 | 44 | 272 | 5.33e-45 | 157 |
| MS.gene027748.t1 | MTR_4g094942 | 33.562 | 292 | 176 | 7 | 58 | 337 | 51 | 336 | 6.07e-44 | 155 |
| MS.gene027748.t1 | MTR_3g102310 | 33.856 | 319 | 185 | 9 | 38 | 337 | 29 | 340 | 6.16e-44 | 154 |
| MS.gene027748.t1 | MTR_2g089490 | 34.328 | 268 | 150 | 9 | 70 | 322 | 28 | 284 | 1.80e-35 | 131 |
| MS.gene027748.t1 | MTR_2g011500 | 30.116 | 259 | 160 | 6 | 55 | 307 | 55 | 298 | 1.97e-33 | 125 |
| MS.gene027748.t1 | MTR_2g089490 | 33.208 | 265 | 154 | 8 | 70 | 322 | 28 | 281 | 3.40e-33 | 125 |
| MS.gene027748.t1 | MTR_5g015670 | 34.343 | 198 | 121 | 4 | 91 | 283 | 101 | 294 | 2.41e-31 | 121 |
| MS.gene027748.t1 | MTR_3g103080 | 46.218 | 119 | 63 | 1 | 93 | 211 | 67 | 184 | 3.50e-25 | 103 |
| MS.gene027748.t1 | MTR_4g095790 | 29.808 | 208 | 128 | 6 | 91 | 285 | 66 | 268 | 8.08e-19 | 86.3 |
| MS.gene027748.t1 | MTR_3g102520 | 28.736 | 174 | 115 | 6 | 39 | 211 | 75 | 240 | 3.12e-12 | 67.4 |
| MS.gene027748.t1 | MTR_3g060770 | 31.579 | 114 | 77 | 1 | 88 | 201 | 56 | 168 | 2.69e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027748.t1 | AT5G65420 | 48.457 | 324 | 135 | 9 | 1 | 317 | 1 | 299 | 1.73e-92 | 278 |
| MS.gene027748.t1 | AT5G65420 | 47.006 | 334 | 135 | 10 | 1 | 317 | 1 | 309 | 4.38e-89 | 270 |
| MS.gene027748.t1 | AT5G65420 | 53.755 | 253 | 99 | 5 | 1 | 251 | 1 | 237 | 7.42e-88 | 265 |
| MS.gene027748.t1 | AT5G10440 | 54.618 | 249 | 100 | 4 | 43 | 281 | 12 | 257 | 5.26e-86 | 262 |
| MS.gene027748.t1 | AT2G22490 | 46.178 | 314 | 147 | 5 | 30 | 323 | 26 | 337 | 8.47e-81 | 251 |
| MS.gene027748.t1 | AT2G22490 | 45.714 | 315 | 148 | 6 | 30 | 323 | 26 | 338 | 2.49e-79 | 247 |
| MS.gene027748.t1 | AT5G65420 | 51.709 | 234 | 95 | 5 | 1 | 232 | 1 | 218 | 1.65e-76 | 235 |
| MS.gene027748.t1 | AT5G10440 | 59.218 | 179 | 72 | 1 | 55 | 232 | 31 | 209 | 1.15e-72 | 225 |
| MS.gene027748.t1 | AT1G70210 | 37.075 | 294 | 153 | 6 | 1 | 286 | 12 | 281 | 5.64e-54 | 181 |
| MS.gene027748.t1 | AT3G50070 | 41.475 | 217 | 122 | 2 | 93 | 305 | 86 | 301 | 4.06e-48 | 166 |
| MS.gene027748.t1 | AT5G67260 | 39.189 | 222 | 129 | 2 | 90 | 307 | 93 | 312 | 4.99e-46 | 160 |
| MS.gene027748.t1 | AT5G67260 | 39.189 | 222 | 129 | 2 | 90 | 307 | 93 | 312 | 2.14e-45 | 160 |
| MS.gene027748.t1 | AT4G34160 | 38.614 | 202 | 120 | 1 | 93 | 290 | 87 | 288 | 5.84e-43 | 153 |
| MS.gene027748.t1 | AT4G03270 | 33.333 | 273 | 161 | 11 | 70 | 330 | 35 | 298 | 9.75e-29 | 113 |
| MS.gene027748.t1 | AT4G03270 | 33.333 | 273 | 160 | 12 | 70 | 330 | 35 | 297 | 7.11e-27 | 108 |
| MS.gene027748.t1 | AT4G37630 | 39.474 | 152 | 89 | 3 | 96 | 245 | 75 | 225 | 1.05e-26 | 107 |
| MS.gene027748.t1 | AT4G37630 | 39.610 | 154 | 88 | 4 | 96 | 245 | 75 | 227 | 4.43e-26 | 105 |
| MS.gene027748.t1 | AT4G37630 | 39.610 | 154 | 88 | 4 | 96 | 245 | 75 | 227 | 1.26e-25 | 105 |
| MS.gene027748.t1 | AT5G02110 | 25.328 | 229 | 164 | 4 | 57 | 283 | 42 | 265 | 2.59e-15 | 76.3 |
| MS.gene027748.t1 | AT5G02110 | 27.072 | 181 | 123 | 5 | 107 | 283 | 61 | 236 | 1.12e-12 | 68.2 |
| MS.gene027748.t1 | AT3G11520 | 30.952 | 126 | 83 | 2 | 87 | 212 | 185 | 306 | 8.72e-11 | 63.2 |
Find 73 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACTACTATTTGAAGAATT+TGG | 0.142214 | 5.2:-22531403 | None:intergenic |
| CATTGCAGGTATTGACTTCT+TGG | 0.185519 | 5.2:+22530888 | MS.gene027748:intron |
| CAACAGGCTCATGCTTATTA+TGG | 0.202944 | 5.2:+22530199 | MS.gene027748:intron |
| CTTCTCACTTGCAGCTAAAA+TGG | 0.203094 | 5.2:+22530435 | MS.gene027748:CDS |
| TTTGATGATGTTGTTGTTGA+TGG | 0.218914 | 5.2:+22529546 | MS.gene027748:CDS |
| AGCGGTGGCCATTTCTTTAA+AGG | 0.230204 | 5.2:+22530936 | MS.gene027748:CDS |
| GTTCTGGAATTTCACCTTCT+TGG | 0.254087 | 5.2:+22529568 | MS.gene027748:CDS |
| GTATTGACTTCTTGGAATTC+AGG | 0.261158 | 5.2:+22530896 | MS.gene027748:CDS |
| GCTCATGCTTATTATGGATT+TGG | 0.271798 | 5.2:+22530205 | MS.gene027748:CDS |
| GAGAGGCTCTTGATTGGATT+TGG | 0.272878 | 5.2:+22529760 | MS.gene027748:CDS |
| TTCTGGAATTTCACCTTCTT+GGG | 0.284443 | 5.2:+22529569 | MS.gene027748:CDS |
| GATGTTGTTGTTGATGGTTC+TGG | 0.287901 | 5.2:+22529552 | MS.gene027748:CDS |
| GCCTCACTCTGTAGATTTAC+AGG | 0.291321 | 5.2:+22530471 | MS.gene027748:CDS |
| TTAGCTTGGAATACAAATTT+CGG | 0.332705 | 5.2:-22530596 | None:intergenic |
| CTAATGATATTAAGCTCATT+AGG | 0.351519 | 5.2:+22530638 | MS.gene027748:CDS |
| AAGATTGCGTAGTGGTGATT+TGG | 0.353471 | 5.2:+22529722 | MS.gene027748:CDS |
| TTGTACCTCAAAGCCCTATA+GGG | 0.359864 | 5.2:+22531323 | MS.gene027748:CDS |
| ATAGTAGTCCAAATGCTAAA+AGG | 0.376678 | 5.2:+22531416 | MS.gene027748:CDS |
| CTGCATCAAGCACCCCTATA+GGG | 0.377105 | 5.2:-22531336 | None:intergenic |
| CCTGCATCAAGCACCCCTAT+AGG | 0.378400 | 5.2:-22531337 | None:intergenic |
| TGAGGAAATTGTGAAGGTTT+TGG | 0.396398 | 5.2:+22529656 | MS.gene027748:CDS |
| TGATTTCTTCATTGTAGATA+AGG | 0.415109 | 5.2:+22530993 | MS.gene027748:CDS |
| CATTGTGAAGTTCCACTTGA+AGG | 0.419205 | 5.2:-22531454 | None:intergenic |
| CCTATAGGGGTGCTTGATGC+AGG | 0.419427 | 5.2:+22531337 | MS.gene027748:CDS |
| TTGCCTATCTGTGAACTACT+TGG | 0.419531 | 5.2:+22530240 | MS.gene027748:CDS |
| TTTGTACCTCAAAGCCCTAT+AGG | 0.422461 | 5.2:+22531322 | MS.gene027748:CDS |
| GCCTTATCAACTTCTTGTGC+TGG | 0.423850 | 5.2:-22530964 | None:intergenic |
| TTAGAAGAGAGGCTCTTGAT+TGG | 0.426958 | 5.2:+22529754 | MS.gene027748:CDS |
| TGGCAGTTCCTTTAAAGAAA+TGG | 0.427409 | 5.2:-22530944 | None:intergenic |
| AAGAGTGATGAATTAACAAA+TGG | 0.427900 | 5.2:+22531373 | MS.gene027748:CDS |
| GCTAAAAGGATCAAATTTGA+TGG | 0.428970 | 5.2:+22531430 | MS.gene027748:CDS |
| AAGAGATCTTTCCTTGATCA+AGG | 0.429000 | 5.2:+22531276 | MS.gene027748:CDS |
| GTATACCCTTGATTATGTTA+AGG | 0.453130 | 5.2:-22530772 | None:intergenic |
| ATTGCCACCAACCTTGATCA+AGG | 0.465173 | 5.2:-22531287 | None:intergenic |
| TACAATGAAGAAATCAGTTA+TGG | 0.468668 | 5.2:-22530986 | None:intergenic |
| AGCTAAAACAATTCAGAGAA+TGG | 0.472457 | 5.2:+22530613 | MS.gene027748:CDS |
| GCTCATCCTTAACATAATCA+AGG | 0.474269 | 5.2:+22530766 | MS.gene027748:CDS |
| GGACCACACAAATGTTAACT+TGG | 0.481111 | 5.2:+22529590 | MS.gene027748:CDS |
| CTTATCAAATAATCCTCTCT+AGG | 0.496731 | 5.2:-22529702 | None:intergenic |
| ATAGGGCTTTGAGGTACAAA+TGG | 0.498065 | 5.2:-22531319 | None:intergenic |
| GACTACTTCCTTGCTAAGAT+CGG | 0.500349 | 5.2:+22530698 | MS.gene027748:CDS |
| GCCAGCACAAGAAGTTGATA+AGG | 0.501706 | 5.2:+22530963 | MS.gene027748:CDS |
| GATCTTTCCTTGATCAAGGT+TGG | 0.502270 | 5.2:+22531280 | MS.gene027748:CDS |
| GATCCAAGTAGTTCACAGAT+AGG | 0.505367 | 5.2:-22530243 | None:intergenic |
| CTACTTGGATCGATTCCTAT+CGG | 0.513308 | 5.2:+22530255 | MS.gene027748:CDS |
| CTTTCCTTGATCAAGGTTGG+TGG | 0.516646 | 5.2:+22531283 | MS.gene027748:CDS |
| GGCTCTTGATTGGATTTGGA+AGG | 0.516855 | 5.2:+22529764 | MS.gene027748:CDS |
| CACAGATAGGCAAAGACTCA+AGG | 0.519430 | 5.2:-22530230 | None:intergenic |
| GAAGGATCATTTACCTAGAG+AGG | 0.532729 | 5.2:+22529689 | MS.gene027748:CDS |
| AGCACCCCTATAGGGCTTTG+AGG | 0.534318 | 5.2:-22531328 | None:intergenic |
| CTATAGGGGTGCTTGATGCA+GGG | 0.537265 | 5.2:+22531338 | MS.gene027748:CDS |
| TTCTGAAATCGCTGCAGCGG+TGG | 0.538599 | 5.2:+22530921 | MS.gene027748:CDS |
| ACTTGCAGCTAAAATGGAAG+AGG | 0.550041 | 5.2:+22530441 | MS.gene027748:CDS |
| AGCAAGGAAGTAGTCTATGA+AGG | 0.550885 | 5.2:-22530690 | None:intergenic |
| TGATATTAAGCTCATTAGGA+TGG | 0.552715 | 5.2:+22530642 | MS.gene027748:CDS |
| TAACTTGGACAACGTTGGAT+CGG | 0.558747 | 5.2:+22529605 | MS.gene027748:CDS |
| GTCTTCTGAAATCGCTGCAG+CGG | 0.561028 | 5.2:+22530918 | MS.gene027748:CDS |
| AATGTTAACTTGGACAACGT+TGG | 0.568354 | 5.2:+22529600 | MS.gene027748:CDS |
| GGATTTGAGTGTTAGAAGAG+AGG | 0.569462 | 5.2:+22529743 | MS.gene027748:CDS |
| AAATTTGATGGACCTTCAAG+TGG | 0.574775 | 5.2:+22531442 | MS.gene027748:CDS |
| ACAAAGTGAGGAAATTGTGA+AGG | 0.578662 | 5.2:+22529650 | MS.gene027748:CDS |
| ACATTTGTGTGGTCCCAAGA+AGG | 0.578876 | 5.2:-22529582 | None:intergenic |
| CTCATTAGGATGGAAAATGC+GGG | 0.579193 | 5.2:+22530652 | MS.gene027748:CDS |
| CTCATCCTTAACATAATCAA+GGG | 0.583650 | 5.2:+22530767 | MS.gene027748:CDS |
| GCTCATTAGGATGGAAAATG+CGG | 0.596765 | 5.2:+22530651 | MS.gene027748:CDS |
| ACAGATAGGCAAAGACTCAA+GGG | 0.613418 | 5.2:-22530229 | None:intergenic |
| TGTACCTCAAAGCCCTATAG+GGG | 0.614209 | 5.2:+22531324 | MS.gene027748:CDS |
| AAGTAGTCTATGAAGGAACA+AGG | 0.614706 | 5.2:-22530683 | None:intergenic |
| TCTCGCAACCGATCTTAGCA+AGG | 0.618158 | 5.2:-22530706 | None:intergenic |
| ACCTGTAAATCTACAGAGTG+AGG | 0.618853 | 5.2:-22530472 | None:intergenic |
| TGTCCAAGTTAACATTTGTG+TGG | 0.630293 | 5.2:-22529593 | None:intergenic |
| ATGTTCAGAGAGGTGTGACT+TGG | 0.635092 | 5.2:+22530386 | MS.gene027748:intron |
| TATTTGATAAGATTGCGTAG+TGG | 0.700846 | 5.2:+22529714 | MS.gene027748:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCAAAATCCAAATA+AGG | - | chr5.2:22530091-22530110 | None:intergenic | 15.0% |
| !! | TTAAAGTTCTTATTCTTAAT+TGG | + | chr5.2:22530048-22530067 | MS.gene027748:intron | 15.0% |
| !!! | TTTTGTTTTAATTCATTGAA+GGG | + | chr5.2:22529793-22529812 | MS.gene027748:intron | 15.0% |
| !!! | TTTTTGTTTTAATTCATTGA+AGG | + | chr5.2:22529792-22529811 | MS.gene027748:intron | 15.0% |
| !! | TTAAGAATAAGAACTTTAAC+AGG | - | chr5.2:22530047-22530066 | None:intergenic | 20.0% |
| !!! | TTGGATTTTGATTTTTTTAC+TGG | + | chr5.2:22530094-22530113 | MS.gene027748:intron | 20.0% |
| ! | AAGAGTGATGAATTAACAAA+TGG | + | chr5.2:22531373-22531392 | MS.gene027748:CDS | 25.0% |
| ! | CTAATGATATTAAGCTCATT+AGG | + | chr5.2:22530638-22530657 | MS.gene027748:CDS | 25.0% |
| ! | CTCAATCTTGTATTGTAATT+GGG | + | chr5.2:22530139-22530158 | MS.gene027748:intron | 25.0% |
| ! | TACAATGAAGAAATCAGTTA+TGG | - | chr5.2:22530989-22531008 | None:intergenic | 25.0% |
| ! | TATTTGATATTCGATCTTAC+CGG | - | chr5.2:22530292-22530311 | None:intergenic | 25.0% |
| ! | TGATTTCTTCATTGTAGATA+AGG | + | chr5.2:22530993-22531012 | MS.gene027748:CDS | 25.0% |
| ! | TGTTTATGTGATTCTTAACT+AGG | + | chr5.2:22529854-22529873 | MS.gene027748:intron | 25.0% |
| !! | AATTTGATCCTTTTAGCATT+TGG | - | chr5.2:22531427-22531446 | None:intergenic | 25.0% |
| !! | GTTTTTCATTGAGGTTTAAT+TGG | + | chr5.2:22529981-22530000 | MS.gene027748:intron | 25.0% |
| !! | TTAGCTTGGAATACAAATTT+CGG | - | chr5.2:22530599-22530618 | None:intergenic | 25.0% |
| !!! | CAAAAGTGTGTTTTTTTATG+TGG | + | chr5.2:22529910-22529929 | MS.gene027748:intron | 25.0% |
| !!! | GTTTGTTTGTGTTTTTTACT+TGG | + | chr5.2:22530317-22530336 | MS.gene027748:intron | 25.0% |
| !!! | TTCTTAATTGGTTTCCATTT+TGG | + | chr5.2:22530060-22530079 | MS.gene027748:intron | 25.0% |
| AGCTAAAACAATTCAGAGAA+TGG | + | chr5.2:22530613-22530632 | MS.gene027748:CDS | 30.0% | |
| ATAGTAGTCCAAATGCTAAA+AGG | + | chr5.2:22531416-22531435 | MS.gene027748:CDS | 30.0% | |
| ATCAATTAGAATGCAATGTC+TGG | + | chr5.2:22529959-22529978 | MS.gene027748:intron | 30.0% | |
| CAAATAAGGAAGAACCAAAA+TGG | - | chr5.2:22530077-22530096 | None:intergenic | 30.0% | |
| CCAATTACAATACAAGATTG+AGG | - | chr5.2:22530141-22530160 | None:intergenic | 30.0% | |
| CCTCAATCTTGTATTGTAAT+TGG | + | chr5.2:22530138-22530157 | MS.gene027748:intron | 30.0% | |
| CTCATCCTTAACATAATCAA+GGG | + | chr5.2:22530767-22530786 | MS.gene027748:CDS | 30.0% | |
| CTTATCAAATAATCCTCTCT+AGG | - | chr5.2:22529705-22529724 | None:intergenic | 30.0% | |
| GAAACATGATATCAAACACA+AGG | - | chr5.2:22531209-22531228 | None:intergenic | 30.0% | |
| GCTAAAAGGATCAAATTTGA+TGG | + | chr5.2:22531430-22531449 | MS.gene027748:CDS | 30.0% | |
| GGACTACTATTTGAAGAATT+TGG | - | chr5.2:22531406-22531425 | None:intergenic | 30.0% | |
| GTATACCCTTGATTATGTTA+AGG | - | chr5.2:22530775-22530794 | None:intergenic | 30.0% | |
| TAAGAACAATGTAGTACACA+AGG | - | chr5.2:22530828-22530847 | None:intergenic | 30.0% | |
| TATTTGATAAGATTGCGTAG+TGG | + | chr5.2:22529714-22529733 | MS.gene027748:CDS | 30.0% | |
| TGATATTAAGCTCATTAGGA+TGG | + | chr5.2:22530642-22530661 | MS.gene027748:CDS | 30.0% | |
| TGTGTACTACATTGTTCTTA+AGG | + | chr5.2:22530828-22530847 | MS.gene027748:intron | 30.0% | |
| TTATGTGATTCTTAACTAGG+TGG | + | chr5.2:22529857-22529876 | MS.gene027748:intron | 30.0% | |
| ! | TCTTGCAATCAATGACTTTT+CGG | - | chr5.2:22530738-22530757 | None:intergenic | 30.0% |
| !! | CATTGATATTGATAATGCAC+AGG | + | chr5.2:22530565-22530584 | MS.gene027748:intron | 30.0% |
| !! | TTTGATGATGTTGTTGTTGA+TGG | + | chr5.2:22529546-22529565 | MS.gene027748:CDS | 30.0% |
| !!! | CATTTTGGTTCTTCCTTATT+TGG | + | chr5.2:22530075-22530094 | MS.gene027748:intron | 30.0% |
| !!! | TTCTCTGAATTGTTTTAGCT+TGG | - | chr5.2:22530613-22530632 | None:intergenic | 30.0% |
| AAGAGATCTTTCCTTGATCA+AGG | + | chr5.2:22531276-22531295 | MS.gene027748:CDS | 35.0% | |
| AAGTAGTCTATGAAGGAACA+AGG | - | chr5.2:22530686-22530705 | None:intergenic | 35.0% | |
| ACAAAGTGAGGAAATTGTGA+AGG | + | chr5.2:22529650-22529669 | MS.gene027748:CDS | 35.0% | |
| ACATGCCATACACAACAATT+AGG | - | chr5.2:22530370-22530389 | None:intergenic | 35.0% | |
| AGATCTGTAACTGCATAGTA+GGG | - | chr5.2:22531050-22531069 | None:intergenic | 35.0% | |
| CTTGCTCACTGTATTTATGT+GGG | - | chr5.2:22531155-22531174 | None:intergenic | 35.0% | |
| GAAAGCCTAATTGTTGTGTA+TGG | + | chr5.2:22530362-22530381 | MS.gene027748:intron | 35.0% | |
| GACCATCCAATCTAAGTTAA+TGG | + | chr5.2:22531071-22531090 | MS.gene027748:intron | 35.0% | |
| GACCATTAACTTAGATTGGA+TGG | - | chr5.2:22531076-22531095 | None:intergenic | 35.0% | |
| GCTCATCCTTAACATAATCA+AGG | + | chr5.2:22530766-22530785 | MS.gene027748:CDS | 35.0% | |
| GCTCATGCTTATTATGGATT+TGG | + | chr5.2:22530205-22530224 | MS.gene027748:CDS | 35.0% | |
| GTACAATTCAATTGCATTGC+AGG | + | chr5.2:22530874-22530893 | MS.gene027748:intron | 35.0% | |
| TAATTTGAACTTCTACCGCA+GGG | + | chr5.2:22531112-22531131 | MS.gene027748:intron | 35.0% | |
| TCTCGACCATTAACTTAGAT+TGG | - | chr5.2:22531080-22531099 | None:intergenic | 35.0% | |
| TCTTCATTGTAGATAAGGTG+AGG | + | chr5.2:22530998-22531017 | MS.gene027748:intron | 35.0% | |
| TCTTGCTCACTGTATTTATG+TGG | - | chr5.2:22531156-22531175 | None:intergenic | 35.0% | |
| TGTCCAAGTTAACATTTGTG+TGG | - | chr5.2:22529596-22529615 | None:intergenic | 35.0% | |
| TTCTTGCTCAACTAATTCTG+TGG | + | chr5.2:22530018-22530037 | MS.gene027748:intron | 35.0% | |
| ! | AAATTTGATGGACCTTCAAG+TGG | + | chr5.2:22531442-22531461 | MS.gene027748:CDS | 35.0% |
| ! | AATGTTAACTTGGACAACGT+TGG | + | chr5.2:22529600-22529619 | MS.gene027748:CDS | 35.0% |
| ! | CTTGCAATCAATGACTTTTC+GGG | - | chr5.2:22530737-22530756 | None:intergenic | 35.0% |
| ! | TGAGGAAATTGTGAAGGTTT+TGG | + | chr5.2:22529656-22529675 | MS.gene027748:CDS | 35.0% |
| ! | TGGCAGTTCCTTTAAAGAAA+TGG | - | chr5.2:22530947-22530966 | None:intergenic | 35.0% |
| !! | ATGTTTTGTTGCACAAAGTG+AGG | + | chr5.2:22529638-22529657 | MS.gene027748:CDS | 35.0% |
| !! | GATATTGATAATGCACAGGT+TGG | + | chr5.2:22530569-22530588 | MS.gene027748:intron | 35.0% |
| !! | GTATTGACTTCTTGGAATTC+AGG | + | chr5.2:22530896-22530915 | MS.gene027748:CDS | 35.0% |
| !! | TTCTGGAATTTCACCTTCTT+GGG | + | chr5.2:22529569-22529588 | MS.gene027748:CDS | 35.0% |
| !!! | CAATGTCTGGTTTTTCATTG+AGG | + | chr5.2:22529972-22529991 | MS.gene027748:intron | 35.0% |
| !!! | CCTATCGGTTTTTCAATTAC+CGG | + | chr5.2:22530270-22530289 | MS.gene027748:CDS | 35.0% |
| AAGATTGCGTAGTGGTGATT+TGG | + | chr5.2:22529722-22529741 | MS.gene027748:CDS | 40.0% | |
| ACAGATAGGCAAAGACTCAA+GGG | - | chr5.2:22530232-22530251 | None:intergenic | 40.0% | |
| ACCTGTAAATCTACAGAGTG+AGG | - | chr5.2:22530475-22530494 | None:intergenic | 40.0% | |
| ACTTGCAGCTAAAATGGAAG+AGG | + | chr5.2:22530441-22530460 | MS.gene027748:CDS | 40.0% | |
| AGCAAGGAAGTAGTCTATGA+AGG | - | chr5.2:22530693-22530712 | None:intergenic | 40.0% | |
| ATAGTAGGGAATCCATTTCC+GGG | - | chr5.2:22531036-22531055 | None:intergenic | 40.0% | |
| CAACAGGCTCATGCTTATTA+TGG | + | chr5.2:22530199-22530218 | MS.gene027748:intron | 40.0% | |
| CATAGTAGGGAATCCATTTC+CGG | - | chr5.2:22531037-22531056 | None:intergenic | 40.0% | |
| CATTGTGAAGTTCCACTTGA+AGG | - | chr5.2:22531457-22531476 | None:intergenic | 40.0% | |
| CCGGTAATTGAAAAACCGAT+AGG | - | chr5.2:22530273-22530292 | None:intergenic | 40.0% | |
| CTCATTAGGATGGAAAATGC+GGG | + | chr5.2:22530652-22530671 | MS.gene027748:CDS | 40.0% | |
| CTGTATTTATGTGGGAACCA+CGG | - | chr5.2:22531147-22531166 | None:intergenic | 40.0% | |
| CTTCTCACTTGCAGCTAAAA+TGG | + | chr5.2:22530435-22530454 | MS.gene027748:CDS | 40.0% | |
| CTTGATTGGATTTGGAAGGT+TGG | + | chr5.2:22529768-22529787 | MS.gene027748:intron | 40.0% | |
| CTTTCTGTAACGTGATCAAC+AGG | + | chr5.2:22530183-22530202 | MS.gene027748:intron | 40.0% | |
| GAAGGATCATTTACCTAGAG+AGG | + | chr5.2:22529689-22529708 | MS.gene027748:CDS | 40.0% | |
| GACTACTTCCTTGCTAAGAT+CGG | + | chr5.2:22530698-22530717 | MS.gene027748:CDS | 40.0% | |
| GAGATCTGTAACTGCATAGT+AGG | - | chr5.2:22531051-22531070 | None:intergenic | 40.0% | |
| GATCCAAGTAGTTCACAGAT+AGG | - | chr5.2:22530246-22530265 | None:intergenic | 40.0% | |
| GATCTTTCCTTGATCAAGGT+TGG | + | chr5.2:22531280-22531299 | MS.gene027748:CDS | 40.0% | |
| GCTCATTAGGATGGAAAATG+CGG | + | chr5.2:22530651-22530670 | MS.gene027748:CDS | 40.0% | |
| GGACCACACAAATGTTAACT+TGG | + | chr5.2:22529590-22529609 | MS.gene027748:CDS | 40.0% | |
| GGATTTGAGTGTTAGAAGAG+AGG | + | chr5.2:22529743-22529762 | MS.gene027748:CDS | 40.0% | |
| GTAATTTGAACTTCTACCGC+AGG | + | chr5.2:22531111-22531130 | MS.gene027748:intron | 40.0% | |
| TAACTTGGACAACGTTGGAT+CGG | + | chr5.2:22529605-22529624 | MS.gene027748:CDS | 40.0% | |
| TTAGAAGAGAGGCTCTTGAT+TGG | + | chr5.2:22529754-22529773 | MS.gene027748:CDS | 40.0% | |
| TTGCCTATCTGTGAACTACT+TGG | + | chr5.2:22530240-22530259 | MS.gene027748:CDS | 40.0% | |
| TTGTACCTCAAAGCCCTATA+GGG | + | chr5.2:22531323-22531342 | MS.gene027748:CDS | 40.0% | |
| TTTCCTTTGCTGAATTGTGC+AGG | + | chr5.2:22531225-22531244 | MS.gene027748:intron | 40.0% | |
| TTTGTACCTCAAAGCCCTAT+AGG | + | chr5.2:22531322-22531341 | MS.gene027748:CDS | 40.0% | |
| ! | CTACTTGGATCGATTCCTAT+CGG | + | chr5.2:22530255-22530274 | MS.gene027748:CDS | 40.0% |
| !! | ATAGGGCTTTGAGGTACAAA+TGG | - | chr5.2:22531322-22531341 | None:intergenic | 40.0% |
| !! | CATTGCAGGTATTGACTTCT+TGG | + | chr5.2:22530888-22530907 | MS.gene027748:intron | 40.0% |
| !! | GATGTTGTTGTTGATGGTTC+TGG | + | chr5.2:22529552-22529571 | MS.gene027748:CDS | 40.0% |
| !! | GTTCTGGAATTTCACCTTCT+TGG | + | chr5.2:22529568-22529587 | MS.gene027748:CDS | 40.0% |
| !!! | GGTTTTGGTTGAGAAAGAGA+AGG | + | chr5.2:22529671-22529690 | MS.gene027748:CDS | 40.0% |
| ACATTTGTGTGGTCCCAAGA+AGG | - | chr5.2:22529585-22529604 | None:intergenic | 45.0% | |
| AGATAAGGTGAGGTTGTGTG+TGG | + | chr5.2:22531008-22531027 | MS.gene027748:intron | 45.0% | |
| AGCGGTGGCCATTTCTTTAA+AGG | + | chr5.2:22530936-22530955 | MS.gene027748:CDS | 45.0% | |
| ATTGCCACCAACCTTGATCA+AGG | - | chr5.2:22531290-22531309 | None:intergenic | 45.0% | |
| CACAGATAGGCAAAGACTCA+AGG | - | chr5.2:22530233-22530252 | None:intergenic | 45.0% | |
| CTTTCCTTGATCAAGGTTGG+TGG | + | chr5.2:22531283-22531302 | MS.gene027748:CDS | 45.0% | |
| GAGAGGCTCTTGATTGGATT+TGG | + | chr5.2:22529760-22529779 | MS.gene027748:CDS | 45.0% | |
| GCCTCACTCTGTAGATTTAC+AGG | + | chr5.2:22530471-22530490 | MS.gene027748:CDS | 45.0% | |
| GCCTTATCAACTTCTTGTGC+TGG | - | chr5.2:22530967-22530986 | None:intergenic | 45.0% | |
| GGCTCTTGATTGGATTTGGA+AGG | + | chr5.2:22529764-22529783 | MS.gene027748:CDS | 45.0% | |
| TCTCCTGCACAATTCAGCAA+AGG | - | chr5.2:22531231-22531250 | None:intergenic | 45.0% | |
| TGTACCTCAAAGCCCTATAG+GGG | + | chr5.2:22531324-22531343 | MS.gene027748:CDS | 45.0% | |
| TGTGTATGGCATGTTCAGAG+AGG | + | chr5.2:22530376-22530395 | MS.gene027748:intron | 45.0% | |
| ! | ATGTTCAGAGAGGTGTGACT+TGG | + | chr5.2:22530386-22530405 | MS.gene027748:intron | 45.0% |
| !! | GCCAGCACAAGAAGTTGATA+AGG | + | chr5.2:22530963-22530982 | MS.gene027748:CDS | 45.0% |
| AACTTCTACCGCAGGGAATC+CGG | + | chr5.2:22531119-22531138 | MS.gene027748:intron | 50.0% | |
| CTGCATCAAGCACCCCTATA+GGG | - | chr5.2:22531339-22531358 | None:intergenic | 50.0% | |
| TCTCGCAACCGATCTTAGCA+AGG | - | chr5.2:22530709-22530728 | None:intergenic | 50.0% | |
| TTGTGTGTGGTTCCCGGAAA+TGG | + | chr5.2:22531021-22531040 | MS.gene027748:intron | 50.0% | |
| !! | CTATAGGGGTGCTTGATGCA+GGG | + | chr5.2:22531338-22531357 | MS.gene027748:CDS | 50.0% |
| !! | GTCTTCTGAAATCGCTGCAG+CGG | + | chr5.2:22530918-22530937 | MS.gene027748:CDS | 50.0% |
| ACTTCTACCGCAGGGAATCC+GGG | + | chr5.2:22531120-22531139 | MS.gene027748:intron | 55.0% | |
| AGCACCCCTATAGGGCTTTG+AGG | - | chr5.2:22531331-22531350 | None:intergenic | 55.0% | |
| CCTGCATCAAGCACCCCTAT+AGG | - | chr5.2:22531340-22531359 | None:intergenic | 55.0% | |
| GTGAGGTTGTGTGTGGTTCC+CGG | + | chr5.2:22531015-22531034 | MS.gene027748:intron | 55.0% | |
| TTATGTGGGAACCACGGACC+CGG | - | chr5.2:22531141-22531160 | None:intergenic | 55.0% | |
| !! | CCTATAGGGGTGCTTGATGC+AGG | + | chr5.2:22531337-22531356 | MS.gene027748:CDS | 55.0% |
| !! | TTCTGAAATCGCTGCAGCGG+TGG | + | chr5.2:22530921-22530940 | MS.gene027748:CDS | 55.0% |
| CCACGGACCCGGATTCCCTG+CGG | - | chr5.2:22531130-22531149 | None:intergenic | 70.0% | |
| CCGCAGGGAATCCGGGTCCG+TGG | + | chr5.2:22531127-22531146 | MS.gene027748:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 22529480 | 22531477 | 22529480 | ID=MS.gene027748 |
| chr5.2 | mRNA | 22529480 | 22531477 | 22529480 | ID=MS.gene027748.t1;Parent=MS.gene027748 |
| chr5.2 | exon | 22529480 | 22529785 | 22529480 | ID=MS.gene027748.t1.exon1;Parent=MS.gene027748.t1 |
| chr5.2 | CDS | 22529480 | 22529785 | 22529480 | ID=cds.MS.gene027748.t1;Parent=MS.gene027748.t1 |
| chr5.2 | exon | 22530205 | 22530291 | 22530205 | ID=MS.gene027748.t1.exon2;Parent=MS.gene027748.t1 |
| chr5.2 | CDS | 22530205 | 22530291 | 22530205 | ID=cds.MS.gene027748.t1;Parent=MS.gene027748.t1 |
| chr5.2 | exon | 22530394 | 22530492 | 22530394 | ID=MS.gene027748.t1.exon3;Parent=MS.gene027748.t1 |
| chr5.2 | CDS | 22530394 | 22530492 | 22530394 | ID=cds.MS.gene027748.t1;Parent=MS.gene027748.t1 |
| chr5.2 | exon | 22530587 | 22530788 | 22530587 | ID=MS.gene027748.t1.exon4;Parent=MS.gene027748.t1 |
| chr5.2 | CDS | 22530587 | 22530788 | 22530587 | ID=cds.MS.gene027748.t1;Parent=MS.gene027748.t1 |
| chr5.2 | exon | 22530896 | 22531014 | 22530896 | ID=MS.gene027748.t1.exon5;Parent=MS.gene027748.t1 |
| chr5.2 | CDS | 22530896 | 22531014 | 22530896 | ID=cds.MS.gene027748.t1;Parent=MS.gene027748.t1 |
| chr5.2 | exon | 22531247 | 22531477 | 22531247 | ID=MS.gene027748.t1.exon6;Parent=MS.gene027748.t1 |
| chr5.2 | CDS | 22531247 | 22531477 | 22531247 | ID=cds.MS.gene027748.t1;Parent=MS.gene027748.t1 |
| Gene Sequence |
| Protein sequence |
