Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027750.t1 | XP_003613086.1 | 94 | 166 | 10 | 0 | 1 | 166 | 62 | 227 | 2.30E-67 | 265 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027750.t1 | Q9FVC1 | 65.9 | 179 | 48 | 2 | 1 | 166 | 62 | 240 | 1.4e-41 | 170.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027750.t1 | G7JXQ9 | 94.0 | 166 | 10 | 0 | 1 | 166 | 62 | 227 | 1.7e-67 | 265.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55353 | MS.gene027750 | PPI |
| MS.gene85927 | MS.gene027750 | PPI |
| MS.gene027750 | MS.gene53154 | PPI |
| MS.gene010053 | MS.gene027750 | PPI |
| MS.gene78610 | MS.gene027750 | PPI |
| MS.gene061528 | MS.gene027750 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027750.t1 | MTR_5g032520 | 93.976 | 166 | 10 | 0 | 1 | 166 | 62 | 227 | 5.25e-111 | 315 |
| MS.gene027750.t1 | MTR_5g032150 | 81.437 | 167 | 30 | 1 | 1 | 166 | 1 | 167 | 4.71e-93 | 267 |
| MS.gene027750.t1 | MTR_5g032150 | 81.437 | 167 | 30 | 1 | 1 | 166 | 62 | 228 | 5.42e-93 | 270 |
| MS.gene027750.t1 | MTR_5g066180 | 46.108 | 167 | 82 | 5 | 1 | 164 | 62 | 223 | 2.60e-33 | 117 |
| MS.gene027750.t1 | MTR_4g093970 | 38.554 | 166 | 84 | 3 | 1 | 164 | 88 | 237 | 1.28e-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027750.t1 | AT2G22540 | 64.246 | 179 | 51 | 2 | 1 | 166 | 57 | 235 | 9.09e-70 | 211 |
| MS.gene027750.t1 | AT2G22540 | 64.246 | 179 | 51 | 2 | 1 | 166 | 62 | 240 | 1.41e-69 | 211 |
| MS.gene027750.t1 | AT2G22540 | 64.246 | 179 | 51 | 2 | 1 | 166 | 62 | 240 | 1.41e-69 | 211 |
| MS.gene027750.t1 | AT4G24540 | 50.595 | 168 | 66 | 7 | 1 | 163 | 62 | 217 | 3.74e-38 | 130 |
Find 37 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGACACCTCACTCAAAT+TGG | 0.183454 | 5.2:+22502730 | MS.gene027750:CDS |
| CCCTCATCTGCCTTAATTGA+TGG | 0.212199 | 5.2:-22500527 | None:intergenic |
| TTGGAGAAGTCTCTTGAAAC+TGG | 0.275036 | 5.2:+22500591 | MS.gene027750:CDS |
| CTCAGAAAAGCCATCAATTA+AGG | 0.306084 | 5.2:+22500517 | MS.gene027750:CDS |
| TCTGGAAGAATTACAACAAT+TGG | 0.380411 | 5.2:+22500572 | MS.gene027750:CDS |
| TCAGACACCTCACTCAAATT+GGG | 0.388618 | 5.2:+22502731 | MS.gene027750:CDS |
| AGAACCGTCGCTAGAGTTGC+AGG | 0.391211 | 5.2:+22499634 | MS.gene027750:CDS |
| ACCTGCAGGCTTCCATATGC+TGG | 0.416131 | 5.2:+22503750 | MS.gene027750:intron |
| ACCTACTATCAGCCAGCATA+TGG | 0.423697 | 5.2:-22503762 | None:intergenic |
| TAGGTGACGGACATGTTTAA+TGG | 0.427034 | 5.2:+22502596 | MS.gene027750:intron |
| TCAGGGAGAGAAGATTATGA+TGG | 0.464183 | 5.2:+22500715 | MS.gene027750:intron |
| ATTCTTCCAGACTCAAACCT+TGG | 0.464341 | 5.2:-22500560 | None:intergenic |
| GGATCTCCAAGGTTTGAGTC+TGG | 0.471068 | 5.2:+22500554 | MS.gene027750:CDS |
| AAGTCTCTTGAAACTGGGTT+GGG | 0.490075 | 5.2:+22500597 | MS.gene027750:CDS |
| CACTGAAGAAGGTCAATCTT+CGG | 0.493342 | 5.2:+22502655 | MS.gene027750:CDS |
| ATGTTTAATGGTAAAAGTCT+TGG | 0.495486 | 5.2:+22502608 | MS.gene027750:CDS |
| GAAGTCTCTTGAAACTGGGT+TGG | 0.501534 | 5.2:+22500596 | MS.gene027750:CDS |
| TTTAATGGTAAAAGTCTTGG+AGG | 0.517414 | 5.2:+22502611 | MS.gene027750:CDS |
| GAGAACGTGGTCACTGAAGA+AGG | 0.533782 | 5.2:+22502644 | MS.gene027750:CDS |
| GCCATCAATTAAGGCAGATG+AGG | 0.554868 | 5.2:+22500526 | MS.gene027750:CDS |
| CCATCAATTAAGGCAGATGA+GGG | 0.559358 | 5.2:+22500527 | MS.gene027750:CDS |
| GATCAATGAGCTACAAACAA+AGG | 0.563866 | 5.2:+22500739 | MS.gene027750:CDS |
| AGACCTTGGTTTCAATTACA+CGG | 0.567331 | 5.2:-22500620 | None:intergenic |
| TGGAGAAGTCTCTTGAAACT+GGG | 0.575456 | 5.2:+22500592 | MS.gene027750:CDS |
| CAACTCTACTAGTCCTCCAC+AGG | 0.580687 | 5.2:+22502697 | MS.gene027750:CDS |
| CTTGCAGGGAAGGCAACTGA+TGG | 0.581631 | 5.2:+22502324 | MS.gene027750:intron |
| ATTAAGGCAGATGAGGGGAG+AGG | 0.599804 | 5.2:+22500533 | MS.gene027750:CDS |
| GAGCTCTCATAGTCCTGTGG+AGG | 0.606403 | 5.2:-22502710 | None:intergenic |
| CAACTGTTCTAGACTGAGCA+AGG | 0.612785 | 5.2:+22500488 | MS.gene027750:CDS |
| TCTGAGCTCTCATAGTCCTG+TGG | 0.617975 | 5.2:-22502713 | None:intergenic |
| GGGCCGTGTAATTGAAACCA+AGG | 0.647098 | 5.2:+22500617 | MS.gene027750:CDS |
| CAGACACCTCACTCAAATTG+GGG | 0.648977 | 5.2:+22502732 | MS.gene027750:CDS |
| CCAACCTGCAACTCTAGCGA+CGG | 0.655662 | 5.2:-22499638 | None:intergenic |
| AACTAACCCCAATTTGAGTG+AGG | 0.674292 | 5.2:-22502738 | None:intergenic |
| ATGAGGGGAGAGGATCTCCA+AGG | 0.680871 | 5.2:+22500543 | MS.gene027750:CDS |
| CATCAATTAAGGCAGATGAG+GGG | 0.712596 | 5.2:+22500528 | MS.gene027750:CDS |
| AGGAGTTGAATATGAGAACG+TGG | 0.723449 | 5.2:+22502631 | MS.gene027750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAATAGAAATTTAAT+AGG | - | chr5.2:22501194-22501213 | None:intergenic | 10.0% |
| !! | CATAAAAAAAGAAAAAAAAA+TGG | - | chr5.2:22503110-22503129 | None:intergenic | 10.0% |
| !! | GATAATTTATTATTATAATG+TGG | + | chr5.2:22503033-22503052 | MS.gene027750:intron | 10.0% |
| !! | TACTTTATATATACTTAATT+TGG | - | chr5.2:22501223-22501242 | None:intergenic | 10.0% |
| !! | TTAAATAATTACAAAATCTT+TGG | + | chr5.2:22500343-22500362 | MS.gene027750:intron | 10.0% |
| !!! | TTTTATAAAGTAATGATTTA+GGG | - | chr5.2:22503649-22503668 | None:intergenic | 10.0% |
| !!! | TTTTTATAAAGTAATGATTT+AGG | - | chr5.2:22503650-22503669 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCTTTTTTTATGA+CGG | + | chr5.2:22503111-22503130 | MS.gene027750:intron | 10.0% |
| !! | ACACAATATTTATGTTTATA+AGG | + | chr5.2:22501272-22501291 | MS.gene027750:intron | 15.0% |
| !! | ATTATTTAAACAACTAATGT+CGG | - | chr5.2:22500332-22500351 | None:intergenic | 15.0% |
| !! | GAAAAAACAAAAATTAGTTA+GGG | + | chr5.2:22503222-22503241 | MS.gene027750:intron | 15.0% |
| !! | TATGTAAAAATGTAAAATTG+AGG | + | chr5.2:22503060-22503079 | MS.gene027750:intron | 15.0% |
| !! | TGAAAAAACAAAAATTAGTT+AGG | + | chr5.2:22503221-22503240 | MS.gene027750:intron | 15.0% |
| !! | TTATCTTAGATTAAATAAGA+TGG | - | chr5.2:22502433-22502452 | None:intergenic | 15.0% |
| !! | TTCACTATTAATTAAAGTAT+TGG | - | chr5.2:22502978-22502997 | None:intergenic | 15.0% |
| !!! | AAATTTTCCTAATAATGATA+TGG | + | chr5.2:22502451-22502470 | MS.gene027750:intron | 15.0% |
| !!! | AATTTTCCTAATAATGATAT+GGG | + | chr5.2:22502452-22502471 | MS.gene027750:intron | 15.0% |
| !!! | ATTTTTCTATGTCTAAATAA+CGG | - | chr5.2:22500879-22500898 | None:intergenic | 15.0% |
| !!! | CTAATATTTTTTTTTTTTGG+TGG | + | chr5.2:22501436-22501455 | MS.gene027750:intron | 15.0% |
| !!! | TATTTTTATTTTTGCACATA+TGG | + | chr5.2:22501632-22501651 | MS.gene027750:intron | 15.0% |
| !!! | TGTGTACAATAATTTTTATA+TGG | + | chr5.2:22500384-22500403 | MS.gene027750:intron | 15.0% |
| !!! | TTTTTTTCTTTTTTTATGAC+GGG | + | chr5.2:22503112-22503131 | MS.gene027750:intron | 15.0% |
| !! | AAAATTGTGTTAAATATGCA+AGG | - | chr5.2:22501515-22501534 | None:intergenic | 20.0% |
| !! | AAAGAAAATCTTGAATAGAT+TGG | + | chr5.2:22499773-22499792 | MS.gene027750:intron | 20.0% |
| !! | AAATGTCACATTATATGTTT+GGG | - | chr5.2:22502928-22502947 | None:intergenic | 20.0% |
| !! | ACTAAACTATTATTTGATAG+AGG | - | chr5.2:22500010-22500029 | None:intergenic | 20.0% |
| !! | AGACATAGAAAAATGTTATT+TGG | + | chr5.2:22500885-22500904 | MS.gene027750:intron | 20.0% |
| !! | ATTAATAGTGAAAAGAAGAA+AGG | + | chr5.2:22502986-22503005 | MS.gene027750:intron | 20.0% |
| !! | GAAAGATTCCATATTATATA+TGG | + | chr5.2:22500077-22500096 | MS.gene027750:intron | 20.0% |
| !! | TAATTACAAAATCTTTGGAT+AGG | + | chr5.2:22500348-22500367 | MS.gene027750:intron | 20.0% |
| !! | TGAAACTATATATAAGGAAA+AGG | + | chr5.2:22501079-22501098 | MS.gene027750:intron | 20.0% |
| !! | TGCACATACTAAAATTAAAT+GGG | - | chr5.2:22503141-22503160 | None:intergenic | 20.0% |
| !! | TGTGATTGAAACTATATATA+AGG | + | chr5.2:22501073-22501092 | MS.gene027750:intron | 20.0% |
| !! | TTAAATTTAAGCATCAAACA+TGG | - | chr5.2:22500447-22500466 | None:intergenic | 20.0% |
| !! | TTGCACATACTAAAATTAAA+TGG | - | chr5.2:22503142-22503161 | None:intergenic | 20.0% |
| !!! | AAATAATAAGACCTTTTCAT+AGG | + | chr5.2:22500132-22500151 | MS.gene027750:intron | 20.0% |
| !!! | AATAATAAGACCTTTTCATA+GGG | + | chr5.2:22500133-22500152 | MS.gene027750:intron | 20.0% |
| !!! | ATATTTTTTTTTTTTGGTGG+TGG | + | chr5.2:22501439-22501458 | MS.gene027750:intron | 20.0% |
| !!! | ATGTGATGTTATATATGTTT+TGG | - | chr5.2:22502093-22502112 | None:intergenic | 20.0% |
| !!! | ATGTTTAGTCATATTTTAGT+GGG | - | chr5.2:22503523-22503542 | None:intergenic | 20.0% |
| !!! | ATTAGGAAGTTTTTTTTTTG+AGG | - | chr5.2:22503495-22503514 | None:intergenic | 20.0% |
| !!! | ATTTTCACAGCTTTTAAAAT+AGG | + | chr5.2:22501734-22501753 | MS.gene027750:intron | 20.0% |
| !!! | CATAAATATTGTGTGTTTTT+CGG | - | chr5.2:22501266-22501285 | None:intergenic | 20.0% |
| !!! | TCTGTTAGTATTTTTACTAA+AGG | - | chr5.2:22500237-22500256 | None:intergenic | 20.0% |
| ! | AATGTCACATTATATGTTTG+GGG | - | chr5.2:22502927-22502946 | None:intergenic | 25.0% |
| ! | ATACTTCATGAGAAAATGTT+GGG | + | chr5.2:22500053-22500072 | MS.gene027750:intron | 25.0% |
| ! | ATGTGTATGCATATATATGT+AGG | - | chr5.2:22501125-22501144 | None:intergenic | 25.0% |
| ! | ATGTTTAATGGTAAAAGTCT+TGG | + | chr5.2:22502608-22502627 | MS.gene027750:CDS | 25.0% |
| ! | CAAACATATAATGTGACATT+TGG | + | chr5.2:22502927-22502946 | MS.gene027750:intron | 25.0% |
| ! | CAAATGTCACATTATATGTT+TGG | - | chr5.2:22502929-22502948 | None:intergenic | 25.0% |
| ! | CAAGCAAACCATATATAATA+TGG | - | chr5.2:22500088-22500107 | None:intergenic | 25.0% |
| ! | CCAAGTATATAGTAGATATA+TGG | - | chr5.2:22500917-22500936 | None:intergenic | 25.0% |
| ! | CCATATATCTACTATATACT+TGG | + | chr5.2:22500914-22500933 | MS.gene027750:intron | 25.0% |
| ! | GCGACAAATTAAATTTCATA+GGG | + | chr5.2:22501407-22501426 | MS.gene027750:intron | 25.0% |
| ! | TAAAATCACTTGTATGTGTT+AGG | + | chr5.2:22502577-22502596 | MS.gene027750:intron | 25.0% |
| ! | TAACAAAGGACATTGTATAT+AGG | + | chr5.2:22501848-22501867 | MS.gene027750:intron | 25.0% |
| ! | TACTAGGAAAAGCAAAATTA+AGG | - | chr5.2:22503352-22503371 | None:intergenic | 25.0% |
| ! | TATAAAGTCTGGATATAGAA+AGG | - | chr5.2:22501676-22501695 | None:intergenic | 25.0% |
| ! | TGAAACATTTCTCATAGTTT+CGG | + | chr5.2:22500407-22500426 | MS.gene027750:intron | 25.0% |
| ! | TTGATCGTAAAATTTAGTGA+CGG | - | chr5.2:22503286-22503305 | None:intergenic | 25.0% |
| ! | TTTGTTAAATAGACACTACT+AGG | - | chr5.2:22503368-22503387 | None:intergenic | 25.0% |
| !! | ATAATAAGACCTTTTCATAG+GGG | + | chr5.2:22500134-22500153 | MS.gene027750:intron | 25.0% |
| !! | TAAGTCAAGTTATCTTTTGT+AGG | - | chr5.2:22499847-22499866 | None:intergenic | 25.0% |
| !! | TGTCCTTTGTTATGTTATTT+CGG | - | chr5.2:22501840-22501859 | None:intergenic | 25.0% |
| !! | TTTGTTAATGGAGAAGATTT+TGG | + | chr5.2:22501600-22501619 | MS.gene027750:intron | 25.0% |
| !! | TTTTGTCCCATATCATTATT+AGG | - | chr5.2:22502461-22502480 | None:intergenic | 25.0% |
| !!! | AACATATGATTTGTGGTTTT+AGG | - | chr5.2:22499922-22499941 | None:intergenic | 25.0% |
| !!! | ATATGTTTTGGTTAGTATGA+TGG | - | chr5.2:22502081-22502100 | None:intergenic | 25.0% |
| !!! | CATGTTTAGTCATATTTTAG+TGG | - | chr5.2:22503524-22503543 | None:intergenic | 25.0% |
| !!! | TATTTTAGTGGGTGAAAATT+AGG | - | chr5.2:22503512-22503531 | None:intergenic | 25.0% |
| !!! | TTTTTAGTCATATAGCTTAG+TGG | + | chr5.2:22502823-22502842 | MS.gene027750:intron | 25.0% |
| AAATTACCACACAAAACTCT+TGG | - | chr5.2:22501385-22501404 | None:intergenic | 30.0% | |
| AAGCTAACTGAGTTTCTATT+CGG | - | chr5.2:22499870-22499889 | None:intergenic | 30.0% | |
| AATTACCACACAAAACTCTT+GGG | - | chr5.2:22501384-22501403 | None:intergenic | 30.0% | |
| AGACCGAAATAACATAACAA+AGG | + | chr5.2:22501834-22501853 | MS.gene027750:intron | 30.0% | |
| AGAGGTGGAAAGAATAAAAT+TGG | - | chr5.2:22503617-22503636 | None:intergenic | 30.0% | |
| AGGAAAAGCAAAATTAAGGA+GGG | - | chr5.2:22503348-22503367 | None:intergenic | 30.0% | |
| ATCTTATATCCCCTATGAAA+AGG | - | chr5.2:22500146-22500165 | None:intergenic | 30.0% | |
| CAATGACACATTGAATGAAA+TGG | - | chr5.2:22502788-22502807 | None:intergenic | 30.0% | |
| CACTACTAATTCATCTCAAA+GGG | - | chr5.2:22502860-22502879 | None:intergenic | 30.0% | |
| CTAAAGGTGATAATTGAACT+CGG | - | chr5.2:22500221-22500240 | None:intergenic | 30.0% | |
| CTCGAAAAACATATGATTTG+TGG | - | chr5.2:22499929-22499948 | None:intergenic | 30.0% | |
| GAAAAAAAAAAGTCTGCATG+AGG | - | chr5.2:22502411-22502430 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr5.2:22501484-22501503 | None:intergenic | 30.0% | |
| GATACTTCATGAGAAAATGT+TGG | + | chr5.2:22500052-22500071 | MS.gene027750:intron | 30.0% | |
| GGCGACAAATTAAATTTCAT+AGG | + | chr5.2:22501406-22501425 | MS.gene027750:intron | 30.0% | |
| GGGAATCACATAAAGTATAA+AGG | - | chr5.2:22501364-22501383 | None:intergenic | 30.0% | |
| TAATGATGTGATGAAAAGTG+AGG | + | chr5.2:22500971-22500990 | MS.gene027750:intron | 30.0% | |
| TAGGAAAAGCAAAATTAAGG+AGG | - | chr5.2:22503349-22503368 | None:intergenic | 30.0% | |
| TAGTTAGGGAAATTTAGAGA+GGG | + | chr5.2:22503236-22503255 | MS.gene027750:intron | 30.0% | |
| TCACTACTAATTCATCTCAA+AGG | - | chr5.2:22502861-22502880 | None:intergenic | 30.0% | |
| TCTATATCCAGACTTTATAG+AGG | + | chr5.2:22501677-22501696 | MS.gene027750:intron | 30.0% | |
| TCTGGAAGAATTACAACAAT+TGG | + | chr5.2:22500572-22500591 | MS.gene027750:CDS | 30.0% | |
| TGTTTATTTCGATTCAGTTG+TGG | - | chr5.2:22502128-22502147 | None:intergenic | 30.0% | |
| TTACAAAATCTTTGGATAGG+AGG | + | chr5.2:22500351-22500370 | MS.gene027750:intron | 30.0% | |
| TTAGTTAGGGAAATTTAGAG+AGG | + | chr5.2:22503235-22503254 | MS.gene027750:intron | 30.0% | |
| TTGTGTTAAATATGCAAGGT+TGG | - | chr5.2:22501511-22501530 | None:intergenic | 30.0% | |
| TTTAATGGTAAAAGTCTTGG+AGG | + | chr5.2:22502611-22502630 | MS.gene027750:CDS | 30.0% | |
| TTTCTATGTCTAAATAACGG+TGG | - | chr5.2:22500876-22500895 | None:intergenic | 30.0% | |
| ! | ATTTAGTGACGGAATTATAG+AGG | - | chr5.2:22503275-22503294 | None:intergenic | 30.0% |
| ! | GATTTAGGGTAAGAAATAAG+AGG | - | chr5.2:22503635-22503654 | None:intergenic | 30.0% |
| ! | GTCACTAAATTTTACGATCA+AGG | + | chr5.2:22503285-22503304 | MS.gene027750:intron | 30.0% |
| ! | GTGTTGGAATATGTGTTATT+CGG | - | chr5.2:22502152-22502171 | None:intergenic | 30.0% |
| ! | TTTAGTGACGGAATTATAGA+GGG | - | chr5.2:22503274-22503293 | None:intergenic | 30.0% |
| ! | TTTTGCCCTATGAAATTTAG+TGG | - | chr5.2:22502189-22502208 | None:intergenic | 30.0% |
| !! | AAGAGTTTTGTGTGGTAATT+TGG | + | chr5.2:22501384-22501403 | MS.gene027750:intron | 30.0% |
| !! | AGAGTTTTGTGTGGTAATTT+GGG | + | chr5.2:22501385-22501404 | MS.gene027750:intron | 30.0% |
| !! | ATTGATGTTTTTGATGTACG+AGG | - | chr5.2:22501900-22501919 | None:intergenic | 30.0% |
| !! | TCATTCAAGTTTGAGGTTTT+TGG | - | chr5.2:22501993-22502012 | None:intergenic | 30.0% |
| !! | TGGAGATTTGGATTTGTTTT+CGG | - | chr5.2:22501945-22501964 | None:intergenic | 30.0% |
| !! | TGTTGCAACGAATTTGTTAA+TGG | + | chr5.2:22501588-22501607 | MS.gene027750:intron | 30.0% |
| !!! | AAAACATCTTTCGAGTTTTC+AGG | + | chr5.2:22500697-22500716 | MS.gene027750:intron | 30.0% |
| !!! | AAACATCTTTCGAGTTTTCA+GGG | + | chr5.2:22500698-22500717 | MS.gene027750:intron | 30.0% |
| !!! | ATCATACATGTCGTTTTAGT+CGG | - | chr5.2:22502360-22502379 | None:intergenic | 30.0% |
| !!! | ATGTTTGGAAGTTGTTTTTG+AGG | - | chr5.2:22502016-22502035 | None:intergenic | 30.0% |
| !!! | TTTTTCGAGTATCCTATGTA+TGG | + | chr5.2:22499940-22499959 | MS.gene027750:intron | 30.0% |
| AACAAGTGGAGTGATAAAGT+TGG | + | chr5.2:22500193-22500212 | MS.gene027750:intron | 35.0% | |
| ACTAACAGTTGTCCATACAT+AGG | - | chr5.2:22499955-22499974 | None:intergenic | 35.0% | |
| AGACCTTGGTTTCAATTACA+CGG | - | chr5.2:22500623-22500642 | None:intergenic | 35.0% | |
| ATCCCACCACTAAATTTCAT+AGG | + | chr5.2:22502180-22502199 | MS.gene027750:intron | 35.0% | |
| ATGTATGGACAACTGTTAGT+GGG | + | chr5.2:22499955-22499974 | MS.gene027750:intron | 35.0% | |
| CAAATTCGTTGCAACAATCT+AGG | - | chr5.2:22501584-22501603 | None:intergenic | 35.0% | |
| CACATATTCCAACACTCATT+TGG | + | chr5.2:22502157-22502176 | MS.gene027750:intron | 35.0% | |
| CTCAGAAAAGCCATCAATTA+AGG | + | chr5.2:22500517-22500536 | MS.gene027750:CDS | 35.0% | |
| GAAAAATACAGATGCAACCT+GGG | - | chr5.2:22503473-22503492 | None:intergenic | 35.0% | |
| GATCAATGAGCTACAAACAA+AGG | + | chr5.2:22500739-22500758 | MS.gene027750:CDS | 35.0% | |
| GATTCAGTTGTGGAAATTCA+AGG | - | chr5.2:22502118-22502137 | None:intergenic | 35.0% | |
| GCATAATATATGCAAGGTTC+AGG | - | chr5.2:22501478-22501497 | None:intergenic | 35.0% | |
| GTAGATAGAATTGAAGACCT+TGG | - | chr5.2:22500637-22500656 | None:intergenic | 35.0% | |
| TACGATCAAGGAATTTGTGA+AGG | + | chr5.2:22503297-22503316 | MS.gene027750:intron | 35.0% | |
| TAGGGGATATAAGATTGACT+TGG | + | chr5.2:22500151-22500170 | MS.gene027750:intron | 35.0% | |
| TAGTATGATGGTCATTTGGA+GGG | - | chr5.2:22502069-22502088 | None:intergenic | 35.0% | |
| TATGTATGGACAACTGTTAG+TGG | + | chr5.2:22499954-22499973 | MS.gene027750:intron | 35.0% | |
| TCCCACCACTAAATTTCATA+GGG | + | chr5.2:22502181-22502200 | MS.gene027750:intron | 35.0% | |
| TGAACTCTAGACTTTGCATA+TGG | + | chr5.2:22502891-22502910 | MS.gene027750:intron | 35.0% | |
| TGCATACACATACACAATCT+TGG | + | chr5.2:22501134-22501153 | MS.gene027750:intron | 35.0% | |
| TGGTTAGTATGATGGTCATT+TGG | - | chr5.2:22502073-22502092 | None:intergenic | 35.0% | |
| TTAAATATGCAAGGTTGGCA+AGG | - | chr5.2:22501506-22501525 | None:intergenic | 35.0% | |
| TTAGGGTAAGAAATAAGAGG+TGG | - | chr5.2:22503632-22503651 | None:intergenic | 35.0% | |
| TTAGTATGATGGTCATTTGG+AGG | - | chr5.2:22502070-22502089 | None:intergenic | 35.0% | |
| TTGAATCACTTATGTGCTTG+TGG | + | chr5.2:22499681-22499700 | MS.gene027750:intron | 35.0% | |
| ! | ACAACTTTTACTGAACTTGC+AGG | + | chr5.2:22502309-22502328 | MS.gene027750:intron | 35.0% |
| ! | ATATTTGCTAACTTGTACCC+AGG | + | chr5.2:22503453-22503472 | MS.gene027750:intron | 35.0% |
| ! | CAACTTTTACTGAACTTGCA+GGG | + | chr5.2:22502310-22502329 | MS.gene027750:intron | 35.0% |
| ! | TTTGAGGTCATTCAAGTTTG+AGG | - | chr5.2:22502000-22502019 | None:intergenic | 35.0% |
| !! | AGTATCCGAGTCTTATTTGA+AGG | + | chr5.2:22501239-22501258 | MS.gene027750:intron | 35.0% |
| !! | ATAAGATTGACTTGGTGGTT+GGG | + | chr5.2:22500159-22500178 | MS.gene027750:intron | 35.0% |
| !! | TATAAGATTGACTTGGTGGT+TGG | + | chr5.2:22500158-22500177 | MS.gene027750:intron | 35.0% |
| !! | TATATGGTTTGCTTGCGTTA+AGG | + | chr5.2:22500093-22500112 | MS.gene027750:intron | 35.0% |
| !! | TTTGGATTTGTTTTCGGAGT+TGG | - | chr5.2:22501939-22501958 | None:intergenic | 35.0% |
| AACTAACCCCAATTTGAGTG+AGG | - | chr5.2:22502741-22502760 | None:intergenic | 40.0% | |
| AAGTCTCTTGAAACTGGGTT+GGG | + | chr5.2:22500597-22500616 | MS.gene027750:CDS | 40.0% | |
| AGGAGTTGAATATGAGAACG+TGG | + | chr5.2:22502631-22502650 | MS.gene027750:CDS | 40.0% | |
| AGTATGATGGTCATTTGGAG+GGG | - | chr5.2:22502068-22502087 | None:intergenic | 40.0% | |
| ATTCTTCCAGACTCAAACCT+TGG | - | chr5.2:22500563-22500582 | None:intergenic | 40.0% | |
| CACTGAAGAAGGTCAATCTT+CGG | + | chr5.2:22502655-22502674 | MS.gene027750:CDS | 40.0% | |
| CACTTGTATGTGTTAGGTGA+CGG | + | chr5.2:22502583-22502602 | MS.gene027750:intron | 40.0% | |
| CATCAATTAAGGCAGATGAG+GGG | + | chr5.2:22500528-22500547 | MS.gene027750:CDS | 40.0% | |
| CCATCAATTAAGGCAGATGA+GGG | + | chr5.2:22500527-22500546 | MS.gene027750:CDS | 40.0% | |
| CTAGACTTTGCATATGGCAA+TGG | + | chr5.2:22502897-22502916 | MS.gene027750:intron | 40.0% | |
| GAATAGATTGGTACCACTGA+AGG | + | chr5.2:22499785-22499804 | MS.gene027750:intron | 40.0% | |
| GCAGACGATAGATAGATGTT+TGG | - | chr5.2:22502031-22502050 | None:intergenic | 40.0% | |
| GCCCTATGAAATTTAGTGGT+GGG | - | chr5.2:22502185-22502204 | None:intergenic | 40.0% | |
| GGAAAAATACAGATGCAACC+TGG | - | chr5.2:22503474-22503493 | None:intergenic | 40.0% | |
| TCAGACACCTCACTCAAATT+GGG | + | chr5.2:22502731-22502750 | MS.gene027750:CDS | 40.0% | |
| TCAGGGAGAGAAGATTATGA+TGG | + | chr5.2:22500715-22500734 | MS.gene027750:intron | 40.0% | |
| TCGGTCCTTCAAATAAGACT+CGG | - | chr5.2:22501247-22501266 | None:intergenic | 40.0% | |
| TCTGCTGTTATGTGGAGATT+TGG | - | chr5.2:22501957-22501976 | None:intergenic | 40.0% | |
| TGCCCTATGAAATTTAGTGG+TGG | - | chr5.2:22502186-22502205 | None:intergenic | 40.0% | |
| TGGAGAAGTCTCTTGAAACT+GGG | + | chr5.2:22500592-22500611 | MS.gene027750:CDS | 40.0% | |
| TTAGCTTCTCAAATGTGCGA+GGG | + | chr5.2:22499883-22499902 | MS.gene027750:intron | 40.0% | |
| TTGGAGAAGTCTCTTGAAAC+TGG | + | chr5.2:22500591-22500610 | MS.gene027750:CDS | 40.0% | |
| ! | TTTTACTGAACTTGCAGGGA+AGG | + | chr5.2:22502314-22502333 | MS.gene027750:intron | 40.0% |
| !! | GGGATATAAGATTGACTTGG+TGG | + | chr5.2:22500154-22500173 | MS.gene027750:intron | 40.0% |
| !! | TAAGATTGACTTGGTGGTTG+GGG | + | chr5.2:22500160-22500179 | MS.gene027750:intron | 40.0% |
| !! | TAGGTGACGGACATGTTTAA+TGG | + | chr5.2:22502596-22502615 | MS.gene027750:intron | 40.0% |
| !! | TGATTCCCAAGAGTTTTGTG+TGG | + | chr5.2:22501376-22501395 | MS.gene027750:intron | 40.0% |
| !!! | TGAGGTTTTTGGTTCAAGTG+TGG | - | chr5.2:22501982-22502001 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTGGTGGTGGCCA+GGG | + | chr5.2:22501445-22501464 | MS.gene027750:intron | 40.0% |
| !!! | TTTTTTTTTTGGTGGTGGCC+AGG | + | chr5.2:22501444-22501463 | MS.gene027750:intron | 40.0% |
| CAGACACCTCACTCAAATTG+GGG | + | chr5.2:22502732-22502751 | MS.gene027750:CDS | 45.0% | |
| CCCTCATCTGCCTTAATTGA+TGG | - | chr5.2:22500530-22500549 | None:intergenic | 45.0% | |
| CTCAGACACCTCACTCAAAT+TGG | + | chr5.2:22502730-22502749 | MS.gene027750:CDS | 45.0% | |
| GAAGTCTCTTGAAACTGGGT+TGG | + | chr5.2:22500596-22500615 | MS.gene027750:CDS | 45.0% | |
| GCCATCAATTAAGGCAGATG+AGG | + | chr5.2:22500526-22500545 | MS.gene027750:CDS | 45.0% | |
| GTATGATGGTCATTTGGAGG+GGG | - | chr5.2:22502067-22502086 | None:intergenic | 45.0% | |
| GTGTGGTTTCTGCTGTTATG+TGG | - | chr5.2:22501965-22501984 | None:intergenic | 45.0% | |
| TCAGCGTCCTCTATAAAGTC+TGG | - | chr5.2:22501687-22501706 | None:intergenic | 45.0% | |
| ! | CAACTGTTCTAGACTGAGCA+AGG | + | chr5.2:22500488-22500507 | MS.gene027750:CDS | 45.0% |
| ! | GTTAGCTTCTCAAATGTGCG+AGG | + | chr5.2:22499882-22499901 | MS.gene027750:intron | 45.0% |
| !! | TTTCGGAGTTGGCTTGAATG+AGG | - | chr5.2:22501928-22501947 | None:intergenic | 45.0% |
| !! | ATAAAAAAAGAAAAAAAAAT+GGG | - | chr5.2:22503109-22503128 | None:intergenic | 5.0% |
| !!! | AAACTAATATTTTTTTTTTT+TGG | + | chr5.2:22501433-22501452 | MS.gene027750:intron | 5.0% |
| !!! | TAAATTATCTTTTTTATTTT+TGG | - | chr5.2:22503022-22503041 | None:intergenic | 5.0% |
| AAGGTTCAGGATTCGAACCC+TGG | - | chr5.2:22501465-22501484 | None:intergenic | 50.0% | |
| ATTAAGGCAGATGAGGGGAG+AGG | + | chr5.2:22500533-22500552 | MS.gene027750:CDS | 50.0% | |
| CAACTCTACTAGTCCTCCAC+AGG | + | chr5.2:22502697-22502716 | MS.gene027750:CDS | 50.0% | |
| GAGAACGTGGTCACTGAAGA+AGG | + | chr5.2:22502644-22502663 | MS.gene027750:CDS | 50.0% | |
| GGATCTCCAAGGTTTGAGTC+TGG | + | chr5.2:22500554-22500573 | MS.gene027750:CDS | 50.0% | |
| GGGCCGTGTAATTGAAACCA+AGG | + | chr5.2:22500617-22500636 | MS.gene027750:CDS | 50.0% | |
| GGTGGGATCCAAATGAGTGT+TGG | - | chr5.2:22502168-22502187 | None:intergenic | 50.0% | |
| TCTGAGCTCTCATAGTCCTG+TGG | - | chr5.2:22502716-22502735 | None:intergenic | 50.0% | |
| ! | TGGTCATTTGGAGGGGGTTT+TGG | - | chr5.2:22502061-22502080 | None:intergenic | 50.0% |
| !! | ACCACTGAAGGTATCTGTGC+TGG | + | chr5.2:22499797-22499816 | MS.gene027750:intron | 50.0% |
| !! | CATGTGCTATTTGCACCTGC+AGG | + | chr5.2:22503736-22503755 | MS.gene027750:intron | 50.0% |
| !! | TCATTTGGAGGGGGTTTTGG+TGG | - | chr5.2:22502058-22502077 | None:intergenic | 50.0% |
| !! | TGAAGGTATCTGTGCTGGCA+TGG | + | chr5.2:22499802-22499821 | MS.gene027750:intron | 50.0% |
| ACCTGCAGGCTTCCATATGC+TGG | + | chr5.2:22503750-22503769 | MS.gene027750:intron | 55.0% | |
| AGAACCGTCGCTAGAGTTGC+AGG | + | chr5.2:22499634-22499653 | MS.gene027750:CDS | 55.0% | |
| ATGAGGGGAGAGGATCTCCA+AGG | + | chr5.2:22500543-22500562 | MS.gene027750:CDS | 55.0% | |
| CCAACCTGCAACTCTAGCGA+CGG | - | chr5.2:22499641-22499660 | None:intergenic | 55.0% | |
| CTTGCAGGGAAGGCAACTGA+TGG | + | chr5.2:22502324-22502343 | MS.gene027750:intron | 55.0% | |
| GAGCTCTCATAGTCCTGTGG+AGG | - | chr5.2:22502713-22502732 | None:intergenic | 55.0% | |
| GCCAGCACAGATACCTTCAG+TGG | - | chr5.2:22499801-22499820 | None:intergenic | 55.0% | |
| GCTTCTCAAATGTGCGAGGG+TGG | + | chr5.2:22499886-22499905 | MS.gene027750:intron | 55.0% | |
| CCGTCGCTAGAGTTGCAGGT+TGG | + | chr5.2:22499638-22499657 | MS.gene027750:intron | 60.0% | |
| GCCAGCATATGGAAGCCTGC+AGG | - | chr5.2:22503754-22503773 | None:intergenic | 60.0% | |
| GGGGCGCGAGAGCTAACAAG+TGG | + | chr5.2:22500179-22500198 | MS.gene027750:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 22499578 | 22503776 | 22499578 | ID=MS.gene027750 |
| chr5.2 | mRNA | 22499578 | 22503776 | 22499578 | ID=MS.gene027750.t1;Parent=MS.gene027750 |
| chr5.2 | exon | 22499578 | 22499655 | 22499578 | ID=MS.gene027750.t1.exon1;Parent=MS.gene027750.t1 |
| chr5.2 | CDS | 22499578 | 22499655 | 22499578 | ID=cds.MS.gene027750.t1;Parent=MS.gene027750.t1 |
| chr5.2 | exon | 22500474 | 22500638 | 22500474 | ID=MS.gene027750.t1.exon2;Parent=MS.gene027750.t1 |
| chr5.2 | CDS | 22500474 | 22500638 | 22500474 | ID=cds.MS.gene027750.t1;Parent=MS.gene027750.t1 |
| chr5.2 | exon | 22500719 | 22500760 | 22500719 | ID=MS.gene027750.t1.exon3;Parent=MS.gene027750.t1 |
| chr5.2 | CDS | 22500719 | 22500760 | 22500719 | ID=cds.MS.gene027750.t1;Parent=MS.gene027750.t1 |
| chr5.2 | exon | 22502331 | 22502372 | 22502331 | ID=MS.gene027750.t1.exon4;Parent=MS.gene027750.t1 |
| chr5.2 | CDS | 22502331 | 22502372 | 22502331 | ID=cds.MS.gene027750.t1;Parent=MS.gene027750.t1 |
| chr5.2 | exon | 22502599 | 22502753 | 22502599 | ID=MS.gene027750.t1.exon5;Parent=MS.gene027750.t1 |
| chr5.2 | CDS | 22502599 | 22502753 | 22502599 | ID=cds.MS.gene027750.t1;Parent=MS.gene027750.t1 |
| chr5.2 | exon | 22503758 | 22503776 | 22503758 | ID=MS.gene027750.t1.exon6;Parent=MS.gene027750.t1 |
| chr5.2 | CDS | 22503758 | 22503776 | 22503758 | ID=cds.MS.gene027750.t1;Parent=MS.gene027750.t1 |
| Gene Sequence |
| Protein sequence |
