Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010053.t1 | XP_024640183.1 | 96.8 | 190 | 6 | 0 | 1 | 190 | 46 | 235 | 1.60E-73 | 285.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010053.t1 | Q9SZJ6 | 65.6 | 183 | 58 | 1 | 1 | 183 | 46 | 223 | 7.8e-37 | 155.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010053.t1 | A0A072UQJ7 | 96.0 | 176 | 7 | 0 | 15 | 190 | 4 | 179 | 1.2e-65 | 259.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010053 | MS.gene046410 | PPI |
| MS.gene010053 | MS.gene86241 | PPI |
| MS.gene070679 | MS.gene010053 | PPI |
| MS.gene010053 | MS.gene44269 | PPI |
| MS.gene010053 | MS.gene027750 | PPI |
| MS.gene78610 | MS.gene010053 | PPI |
| MS.gene069104 | MS.gene010053 | PPI |
| MS.gene010053 | MS.gene53154 | PPI |
| MS.gene027784 | MS.gene010053 | PPI |
| MS.gene55353 | MS.gene010053 | PPI |
| MS.gene85927 | MS.gene010053 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010053.t1 | MTR_5g066990 | 95.455 | 176 | 8 | 0 | 15 | 190 | 4 | 179 | 2.33e-122 | 343 |
| MS.gene010053.t1 | MTR_5g066990 | 88.068 | 176 | 7 | 1 | 15 | 190 | 4 | 165 | 1.32e-108 | 308 |
| MS.gene010053.t1 | MTR_2g009890 | 53.623 | 207 | 96 | 0 | 1 | 207 | 46 | 252 | 1.23e-73 | 224 |
| MS.gene010053.t1 | MTR_5g031000 | 58.333 | 192 | 73 | 4 | 1 | 187 | 46 | 235 | 1.02e-68 | 210 |
| MS.gene010053.t1 | MTR_5g031000 | 54.167 | 192 | 67 | 5 | 1 | 187 | 46 | 221 | 1.23e-59 | 186 |
| MS.gene010053.t1 | MTR_4g092990 | 47.015 | 134 | 70 | 1 | 43 | 176 | 5 | 137 | 1.66e-32 | 114 |
| MS.gene010053.t1 | MTR_3g005530 | 38.583 | 127 | 77 | 1 | 1 | 126 | 46 | 172 | 7.56e-22 | 89.4 |
| MS.gene010053.t1 | MTR_2g017865 | 38.739 | 111 | 67 | 1 | 1 | 110 | 61 | 171 | 4.16e-20 | 85.5 |
| MS.gene010053.t1 | MTR_8g087860 | 35.135 | 111 | 71 | 1 | 1 | 110 | 62 | 172 | 1.24e-18 | 81.3 |
| MS.gene010053.t1 | MTR_8g033270 | 30.808 | 198 | 121 | 7 | 1 | 188 | 46 | 237 | 5.34e-17 | 77.0 |
| MS.gene010053.t1 | MTR_3g452380 | 39.423 | 104 | 61 | 2 | 1 | 102 | 61 | 164 | 5.73e-17 | 77.0 |
| MS.gene010053.t1 | MTR_7g016600 | 35.338 | 133 | 85 | 1 | 1 | 132 | 46 | 178 | 1.05e-16 | 76.3 |
| MS.gene010053.t1 | MTR_5g046790 | 33.071 | 127 | 83 | 2 | 1 | 125 | 46 | 172 | 1.31e-15 | 72.8 |
| MS.gene010053.t1 | MTR_8g066260 | 32.500 | 120 | 79 | 2 | 1 | 118 | 46 | 165 | 1.80e-15 | 72.8 |
| MS.gene010053.t1 | MTR_7g075850 | 36.066 | 122 | 72 | 2 | 1 | 116 | 46 | 167 | 2.53e-15 | 72.4 |
| MS.gene010053.t1 | MTR_4g109830 | 35.000 | 120 | 76 | 2 | 1 | 118 | 46 | 165 | 2.79e-15 | 72.0 |
| MS.gene010053.t1 | MTR_4g102530 | 33.588 | 131 | 80 | 3 | 1 | 127 | 46 | 173 | 2.85e-15 | 71.6 |
| MS.gene010053.t1 | MTR_6g015975 | 33.333 | 129 | 85 | 1 | 1 | 128 | 46 | 174 | 6.70e-15 | 71.2 |
| MS.gene010053.t1 | MTR_5g032150 | 33.333 | 198 | 110 | 4 | 1 | 193 | 46 | 226 | 1.11e-14 | 70.5 |
| MS.gene010053.t1 | MTR_8g033220 | 33.577 | 137 | 88 | 2 | 1 | 134 | 46 | 182 | 1.82e-14 | 69.7 |
| MS.gene010053.t1 | MTR_8g033220 | 33.577 | 137 | 88 | 2 | 1 | 134 | 46 | 182 | 1.89e-14 | 69.7 |
| MS.gene010053.t1 | MTR_5g032520 | 40.152 | 132 | 68 | 4 | 1 | 126 | 46 | 172 | 2.07e-14 | 69.7 |
| MS.gene010053.t1 | MTR_8g097090 | 35.200 | 125 | 76 | 3 | 1 | 121 | 46 | 169 | 2.47e-14 | 69.7 |
| MS.gene010053.t1 | MTR_3g084980 | 32.414 | 145 | 79 | 5 | 1 | 141 | 46 | 175 | 9.41e-14 | 68.2 |
| MS.gene010053.t1 | MTR_4g093970 | 39.200 | 125 | 71 | 2 | 1 | 121 | 72 | 195 | 1.09e-13 | 67.8 |
| MS.gene010053.t1 | MTR_7g075870 | 33.065 | 124 | 82 | 1 | 1 | 123 | 46 | 169 | 1.20e-13 | 67.4 |
| MS.gene010053.t1 | MTR_4g109810 | 31.008 | 129 | 81 | 3 | 1 | 125 | 46 | 170 | 5.56e-13 | 65.9 |
| MS.gene010053.t1 | MTR_7g016630 | 30.400 | 125 | 83 | 3 | 1 | 123 | 46 | 168 | 1.13e-12 | 65.5 |
| MS.gene010053.t1 | MTR_7g075870 | 33.600 | 125 | 81 | 2 | 1 | 123 | 46 | 170 | 1.57e-12 | 64.3 |
| MS.gene010053.t1 | MTR_2g461760 | 33.636 | 110 | 72 | 1 | 17 | 125 | 1 | 110 | 2.60e-12 | 63.2 |
| MS.gene010053.t1 | MTR_2g461760 | 33.636 | 110 | 72 | 1 | 17 | 125 | 1 | 110 | 2.63e-12 | 62.8 |
| MS.gene010053.t1 | MTR_5g066180 | 27.869 | 183 | 118 | 4 | 1 | 175 | 46 | 222 | 2.68e-12 | 63.9 |
| MS.gene010053.t1 | MTR_1g038300 | 28.641 | 206 | 116 | 8 | 1 | 195 | 46 | 231 | 1.22e-11 | 62.0 |
| MS.gene010053.t1 | MTR_1g101970 | 31.783 | 129 | 82 | 3 | 1 | 125 | 46 | 172 | 1.31e-11 | 61.2 |
| MS.gene010053.t1 | MTR_1g053070 | 33.636 | 110 | 68 | 2 | 1 | 105 | 46 | 155 | 2.27e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010053.t1 | AT3G57230 | 55.838 | 197 | 85 | 2 | 1 | 197 | 46 | 240 | 2.87e-71 | 217 |
| MS.gene010053.t1 | AT3G57230 | 55.838 | 197 | 85 | 2 | 1 | 197 | 46 | 240 | 2.87e-71 | 217 |
| MS.gene010053.t1 | AT4G37940 | 57.923 | 183 | 72 | 1 | 1 | 183 | 46 | 223 | 1.04e-68 | 210 |
| MS.gene010053.t1 | AT2G22630 | 53.763 | 186 | 82 | 1 | 1 | 186 | 46 | 227 | 6.70e-64 | 197 |
| MS.gene010053.t1 | AT2G22630 | 53.763 | 186 | 82 | 1 | 1 | 186 | 46 | 227 | 6.70e-64 | 197 |
| MS.gene010053.t1 | AT3G57230 | 53.158 | 190 | 84 | 2 | 6 | 191 | 13 | 201 | 1.59e-63 | 196 |
| MS.gene010053.t1 | AT3G57230 | 53.158 | 190 | 84 | 2 | 6 | 191 | 13 | 201 | 1.59e-63 | 196 |
| MS.gene010053.t1 | AT4G37940 | 53.552 | 183 | 66 | 2 | 1 | 183 | 46 | 209 | 1.71e-59 | 186 |
| MS.gene010053.t1 | AT4G37940 | 55.689 | 167 | 69 | 1 | 17 | 183 | 1 | 162 | 3.10e-58 | 181 |
| MS.gene010053.t1 | AT2G14210 | 53.933 | 178 | 76 | 3 | 1 | 176 | 46 | 219 | 4.43e-49 | 160 |
| MS.gene010053.t1 | AT2G14210 | 53.933 | 178 | 76 | 3 | 1 | 176 | 46 | 219 | 6.11e-49 | 159 |
| MS.gene010053.t1 | AT4G37940 | 71.000 | 100 | 29 | 0 | 1 | 100 | 46 | 145 | 2.87e-46 | 151 |
| MS.gene010053.t1 | AT3G57230 | 69.792 | 96 | 29 | 0 | 1 | 96 | 46 | 141 | 1.40e-43 | 143 |
| MS.gene010053.t1 | AT4G09960 | 37.795 | 127 | 76 | 2 | 1 | 125 | 56 | 181 | 7.41e-22 | 90.1 |
| MS.gene010053.t1 | AT4G09960 | 37.795 | 127 | 76 | 2 | 1 | 125 | 46 | 171 | 7.53e-22 | 89.7 |
| MS.gene010053.t1 | AT4G09960 | 37.795 | 127 | 76 | 2 | 1 | 125 | 47 | 172 | 7.93e-22 | 89.7 |
| MS.gene010053.t1 | AT4G09960 | 37.795 | 127 | 76 | 2 | 1 | 125 | 72 | 197 | 1.83e-21 | 89.4 |
| MS.gene010053.t1 | AT4G18960 | 36.220 | 127 | 78 | 2 | 1 | 125 | 62 | 187 | 3.86e-20 | 85.5 |
| MS.gene010053.t1 | AT4G09960 | 36.641 | 131 | 76 | 3 | 1 | 125 | 141 | 270 | 5.75e-19 | 83.6 |
| MS.gene010053.t1 | AT4G09960 | 41.414 | 99 | 55 | 2 | 1 | 97 | 46 | 143 | 1.06e-18 | 80.9 |
| MS.gene010053.t1 | AT3G58780 | 34.921 | 126 | 81 | 1 | 1 | 125 | 61 | 186 | 1.19e-18 | 81.6 |
| MS.gene010053.t1 | AT3G58780 | 34.921 | 126 | 81 | 1 | 1 | 125 | 67 | 192 | 1.32e-18 | 81.6 |
| MS.gene010053.t1 | AT2G45650 | 37.705 | 122 | 68 | 3 | 1 | 116 | 46 | 165 | 7.08e-18 | 79.7 |
| MS.gene010053.t1 | AT2G45660 | 35.200 | 125 | 80 | 1 | 1 | 124 | 46 | 170 | 1.07e-17 | 78.2 |
| MS.gene010053.t1 | AT2G42830 | 34.146 | 123 | 80 | 1 | 1 | 122 | 61 | 183 | 1.26e-17 | 79.0 |
| MS.gene010053.t1 | AT2G42830 | 33.333 | 126 | 83 | 1 | 1 | 125 | 61 | 186 | 1.79e-17 | 78.2 |
| MS.gene010053.t1 | AT2G45660 | 36.036 | 111 | 70 | 1 | 1 | 110 | 46 | 156 | 4.46e-17 | 75.5 |
| MS.gene010053.t1 | AT3G61120 | 36.800 | 125 | 72 | 3 | 1 | 120 | 46 | 168 | 7.07e-17 | 76.6 |
| MS.gene010053.t1 | AT2G22540 | 36.029 | 136 | 86 | 1 | 1 | 135 | 46 | 181 | 2.35e-16 | 75.1 |
| MS.gene010053.t1 | AT2G22540 | 36.029 | 136 | 86 | 1 | 1 | 135 | 46 | 181 | 2.35e-16 | 75.1 |
| MS.gene010053.t1 | AT5G60910 | 31.496 | 127 | 85 | 2 | 1 | 125 | 46 | 172 | 5.71e-16 | 74.3 |
| MS.gene010053.t1 | AT4G22950 | 36.434 | 129 | 78 | 2 | 1 | 127 | 46 | 172 | 1.02e-15 | 72.0 |
| MS.gene010053.t1 | AT3G58780 | 39.175 | 97 | 58 | 1 | 1 | 96 | 61 | 157 | 1.17e-15 | 73.9 |
| MS.gene010053.t1 | AT5G13790 | 36.719 | 128 | 72 | 2 | 1 | 125 | 46 | 167 | 2.97e-15 | 72.8 |
| MS.gene010053.t1 | AT5G13790 | 36.800 | 125 | 73 | 1 | 1 | 125 | 46 | 164 | 3.93e-15 | 72.4 |
| MS.gene010053.t1 | AT4G18960 | 34.711 | 121 | 76 | 2 | 9 | 127 | 56 | 175 | 4.05e-15 | 70.9 |
| MS.gene010053.t1 | AT2G03710 | 32.558 | 129 | 85 | 1 | 1 | 127 | 46 | 174 | 4.14e-15 | 70.9 |
| MS.gene010053.t1 | AT4G24540 | 30.058 | 173 | 118 | 2 | 1 | 172 | 46 | 216 | 4.32e-15 | 71.6 |
| MS.gene010053.t1 | AT4G22950 | 36.508 | 126 | 76 | 2 | 1 | 124 | 46 | 169 | 6.21e-15 | 70.9 |
| MS.gene010053.t1 | AT4G22950 | 36.508 | 126 | 76 | 2 | 1 | 124 | 46 | 169 | 6.21e-15 | 70.9 |
| MS.gene010053.t1 | AT4G18960 | 34.454 | 119 | 75 | 2 | 9 | 125 | 56 | 173 | 6.69e-15 | 71.2 |
| MS.gene010053.t1 | AT4G18960 | 34.454 | 119 | 75 | 2 | 9 | 125 | 56 | 173 | 6.69e-15 | 71.2 |
| MS.gene010053.t1 | AT5G51860 | 33.858 | 127 | 82 | 1 | 1 | 125 | 46 | 172 | 6.80e-15 | 70.5 |
| MS.gene010053.t1 | AT5G51860 | 32.593 | 135 | 86 | 2 | 1 | 130 | 46 | 180 | 8.07e-15 | 70.5 |
| MS.gene010053.t1 | AT1G26310 | 31.783 | 129 | 84 | 2 | 1 | 125 | 46 | 174 | 1.43e-14 | 70.5 |
| MS.gene010053.t1 | AT2G03710 | 32.283 | 127 | 84 | 1 | 1 | 125 | 46 | 172 | 3.17e-14 | 69.7 |
| MS.gene010053.t1 | AT2G03710 | 32.283 | 127 | 84 | 1 | 1 | 125 | 46 | 172 | 3.34e-14 | 69.7 |
| MS.gene010053.t1 | AT5G62165 | 32.540 | 126 | 82 | 2 | 1 | 124 | 46 | 170 | 3.51e-14 | 68.9 |
| MS.gene010053.t1 | AT5G62165 | 32.540 | 126 | 82 | 2 | 1 | 124 | 46 | 170 | 3.51e-14 | 68.9 |
| MS.gene010053.t1 | AT5G62165 | 32.540 | 126 | 82 | 2 | 1 | 124 | 46 | 170 | 3.51e-14 | 68.9 |
| MS.gene010053.t1 | AT1G69120 | 29.921 | 127 | 87 | 2 | 1 | 125 | 46 | 172 | 3.60e-14 | 69.3 |
| MS.gene010053.t1 | AT1G69120 | 29.921 | 127 | 87 | 2 | 1 | 125 | 46 | 172 | 3.75e-14 | 69.3 |
| MS.gene010053.t1 | AT3G58780 | 32.540 | 126 | 77 | 2 | 1 | 125 | 61 | 179 | 5.56e-14 | 68.9 |
| MS.gene010053.t1 | AT5G15800 | 35.878 | 131 | 76 | 3 | 1 | 126 | 46 | 173 | 1.79e-13 | 67.8 |
| MS.gene010053.t1 | AT5G15800 | 35.878 | 131 | 76 | 3 | 1 | 126 | 46 | 173 | 1.90e-13 | 67.4 |
| MS.gene010053.t1 | AT3G58780 | 33.051 | 118 | 78 | 1 | 9 | 125 | 94 | 211 | 2.36e-13 | 67.4 |
| MS.gene010053.t1 | AT3G02310 | 36.154 | 130 | 75 | 3 | 1 | 125 | 46 | 172 | 4.91e-13 | 66.2 |
| MS.gene010053.t1 | AT3G02310 | 36.364 | 132 | 76 | 3 | 1 | 127 | 46 | 174 | 6.09e-13 | 65.1 |
| MS.gene010053.t1 | AT1G24260 | 33.333 | 126 | 78 | 3 | 1 | 121 | 46 | 170 | 6.63e-13 | 65.9 |
| MS.gene010053.t1 | AT2G22540 | 34.559 | 136 | 83 | 2 | 1 | 135 | 46 | 176 | 2.41e-12 | 64.3 |
| MS.gene010053.t1 | AT5G51870 | 30.303 | 132 | 84 | 2 | 1 | 127 | 46 | 174 | 3.72e-12 | 63.2 |
| MS.gene010053.t1 | AT1G24260 | 32.540 | 126 | 80 | 2 | 1 | 121 | 46 | 171 | 4.72e-12 | 63.5 |
| MS.gene010053.t1 | AT5G60910 | 30.909 | 110 | 75 | 1 | 17 | 125 | 1 | 110 | 5.04e-12 | 62.4 |
| MS.gene010053.t1 | AT5G62165 | 32.143 | 112 | 73 | 2 | 1 | 110 | 46 | 156 | 1.05e-11 | 60.8 |
| MS.gene010053.t1 | AT5G62165 | 32.143 | 112 | 73 | 2 | 1 | 110 | 46 | 156 | 1.05e-11 | 60.8 |
| MS.gene010053.t1 | AT5G62165 | 32.143 | 112 | 73 | 2 | 1 | 110 | 46 | 156 | 1.05e-11 | 60.8 |
| MS.gene010053.t1 | AT4G11880 | 38.596 | 114 | 63 | 3 | 1 | 110 | 46 | 156 | 1.27e-11 | 61.2 |
| MS.gene010053.t1 | AT4G11880 | 38.596 | 114 | 63 | 3 | 1 | 110 | 46 | 156 | 1.27e-11 | 61.2 |
| MS.gene010053.t1 | AT5G51870 | 31.304 | 115 | 71 | 2 | 1 | 110 | 46 | 157 | 1.38e-11 | 62.0 |
| MS.gene010053.t1 | AT5G51870 | 31.304 | 115 | 71 | 2 | 1 | 110 | 56 | 167 | 1.40e-11 | 62.0 |
| MS.gene010053.t1 | AT1G24260 | 33.913 | 115 | 71 | 2 | 1 | 110 | 46 | 160 | 1.63e-11 | 62.0 |
| MS.gene010053.t1 | AT1G69120 | 30.000 | 110 | 76 | 1 | 17 | 125 | 1 | 110 | 6.08e-11 | 59.7 |
| MS.gene010053.t1 | AT5G23260 | 32.000 | 125 | 81 | 2 | 1 | 123 | 46 | 168 | 9.33e-11 | 60.1 |
Find 30 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTGGTGTTCGTATGAAAA+AGG | 0.265336 | 5.2:+57054514 | MS.gene010053:CDS |
| TTTGACAGTCGAAGAATTAC+AGG | 0.296576 | 5.2:+57054463 | MS.gene010053:CDS |
| GAGTTCAACCTCTGAAATTA+AGG | 0.302307 | 5.2:+57045514 | MS.gene010053:CDS |
| GTTGCTGTGGCTGGCTGAGC+TGG | 0.334824 | 5.2:-57055062 | None:intergenic |
| TGTAGTGTTGTTGCTGTGGC+TGG | 0.360947 | 5.2:-57055071 | None:intergenic |
| AGTCGAAGAATTACAGGGTT+TGG | 0.362523 | 5.2:+57054469 | MS.gene010053:CDS |
| CAACACTACAAGGCCCCTTC+AGG | 0.412465 | 5.2:+57055084 | MS.gene010053:CDS |
| TGGAGATTCACAGGTACATT+TGG | 0.417965 | 5.2:-57055042 | None:intergenic |
| CACGAAGGCTGATTTCCAAT+TGG | 0.418933 | 5.2:-57054496 | None:intergenic |
| ATAATGGGTGAAGAATTATC+AGG | 0.435228 | 5.2:+57054440 | MS.gene010053:CDS |
| CCTTCAGGAACTACAAAACT+AGG | 0.437724 | 5.2:+57055099 | MS.gene010053:CDS |
| ACAGGGTTTGGAGAACCAAT+TGG | 0.438427 | 5.2:+57054481 | MS.gene010053:CDS |
| AAAGGGAGGCAGCAGTGTTA+AGG | 0.445407 | 5.2:+57047027 | MS.gene010053:CDS |
| GCCACAGCAACAACACTACA+AGG | 0.474569 | 5.2:+57055074 | MS.gene010053:CDS |
| CAATTGGAAATCAGCCTTCG+TGG | 0.498114 | 5.2:+57054497 | MS.gene010053:CDS |
| ATTAACTAGTTACCTGGTAC+TGG | 0.502905 | 5.2:-57032776 | None:intergenic |
| AAAGAAGAAAATAATCAACT+TGG | 0.504683 | 5.2:+57045491 | MS.gene010053:CDS |
| TATAAATACCTTAATTTCAG+AGG | 0.515760 | 5.2:-57045522 | None:intergenic |
| GCCTTGTAGTGTTGTTGCTG+TGG | 0.521291 | 5.2:-57055075 | None:intergenic |
| TATGGAACAAAAGATAAGAA+TGG | 0.521790 | 5.2:+57054970 | MS.gene010053:CDS |
| TGGCTGAGCTGGAGATTCAC+AGG | 0.536518 | 5.2:-57055051 | None:intergenic |
| TCTATGATTTCGCCAGTACC+AGG | 0.537860 | 5.2:+57032764 | MS.gene010053:CDS |
| TTGAGTCTCACAAATGGTGT+AGG | 0.558166 | 5.2:+57055006 | MS.gene010053:CDS |
| AAATGTCGAACTGTATCGTA+AGG | 0.559396 | 5.2:+57054789 | MS.gene010053:CDS |
| AAGAAGAAAATAATCAACTT+GGG | 0.585390 | 5.2:+57045492 | MS.gene010053:CDS |
| AATACAAGAACTAAATCGAA+AGG | 0.627509 | 5.2:+57054676 | MS.gene010053:CDS |
| CTTCAGGAACTACAAAACTA+GGG | 0.628417 | 5.2:+57055100 | MS.gene010053:CDS |
| ATAATCTGCAAGAAAGTCAC+CGG | 0.633779 | 5.2:+57047060 | MS.gene010053:CDS |
| CTCACAAATGGTGTAGGCAT+AGG | 0.634440 | 5.2:+57055012 | MS.gene010053:CDS |
| TTGACAGTCGAAGAATTACA+GGG | 0.651047 | 5.2:+57054464 | MS.gene010053:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 57032739 | 57055176 | 57032739 | ID=MS.gene010053 |
| chr5.2 | mRNA | 57032739 | 57055176 | 57032739 | ID=MS.gene010053.t1;Parent=MS.gene010053 |
| chr5.2 | exon | 57032739 | 57032785 | 57032739 | ID=MS.gene010053.t1.exon1;Parent=MS.gene010053.t1 |
| chr5.2 | CDS | 57032739 | 57032785 | 57032739 | ID=cds.MS.gene010053.t1;Parent=MS.gene010053.t1 |
| chr5.2 | exon | 57045457 | 57045535 | 57045457 | ID=MS.gene010053.t1.exon2;Parent=MS.gene010053.t1 |
| chr5.2 | CDS | 57045457 | 57045535 | 57045457 | ID=cds.MS.gene010053.t1;Parent=MS.gene010053.t1 |
| chr5.2 | exon | 57047020 | 57047081 | 57047020 | ID=MS.gene010053.t1.exon3;Parent=MS.gene010053.t1 |
| chr5.2 | CDS | 57047020 | 57047081 | 57047020 | ID=cds.MS.gene010053.t1;Parent=MS.gene010053.t1 |
| chr5.2 | exon | 57054436 | 57054535 | 57054436 | ID=MS.gene010053.t1.exon4;Parent=MS.gene010053.t1 |
| chr5.2 | CDS | 57054436 | 57054535 | 57054436 | ID=cds.MS.gene010053.t1;Parent=MS.gene010053.t1 |
| chr5.2 | exon | 57054656 | 57054697 | 57054656 | ID=MS.gene010053.t1.exon5;Parent=MS.gene010053.t1 |
| chr5.2 | CDS | 57054656 | 57054697 | 57054656 | ID=cds.MS.gene010053.t1;Parent=MS.gene010053.t1 |
| chr5.2 | exon | 57054769 | 57054852 | 57054769 | ID=MS.gene010053.t1.exon6;Parent=MS.gene010053.t1 |
| chr5.2 | CDS | 57054769 | 57054852 | 57054769 | ID=cds.MS.gene010053.t1;Parent=MS.gene010053.t1 |
| chr5.2 | exon | 57054967 | 57055176 | 57054967 | ID=MS.gene010053.t1.exon7;Parent=MS.gene010053.t1 |
| chr5.2 | CDS | 57054967 | 57055176 | 57054967 | ID=cds.MS.gene010053.t1;Parent=MS.gene010053.t1 |
| Gene Sequence |
| Protein sequence |
