Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027784.t1 | XP_003613054.1 | 90.9 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 4.50E-77 | 297.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027784.t1 | Q9FVC1 | 52.7 | 188 | 75 | 2 | 3 | 176 | 53 | 240 | 2.7e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027784.t1 | G7JWF1 | 90.9 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 3.2e-77 | 297.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78610 | MS.gene027784 | PPI |
| MS.gene027784 | MS.gene55353 | PPI |
| MS.gene027784 | MS.gene53154 | PPI |
| MS.gene027784 | MS.gene061528 | PPI |
| MS.gene027784 | MS.gene85927 | PPI |
| MS.gene027784 | MS.gene010053 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027784.t1 | MTR_5g032150 | 90.909 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 1.88e-110 | 314 |
| MS.gene027784.t1 | MTR_5g032150 | 94.611 | 167 | 7 | 1 | 12 | 176 | 1 | 167 | 1.64e-109 | 309 |
| MS.gene027784.t1 | MTR_5g032520 | 82.857 | 175 | 29 | 1 | 3 | 176 | 53 | 227 | 3.01e-100 | 288 |
| MS.gene027784.t1 | MTR_5g066180 | 45.402 | 174 | 90 | 5 | 3 | 174 | 53 | 223 | 1.19e-32 | 116 |
| MS.gene027784.t1 | MTR_4g093970 | 39.655 | 174 | 88 | 4 | 3 | 174 | 79 | 237 | 2.24e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027784.t1 | AT2G22540 | 59.043 | 188 | 63 | 3 | 3 | 176 | 53 | 240 | 1.67e-66 | 203 |
| MS.gene027784.t1 | AT2G22540 | 59.043 | 188 | 63 | 3 | 3 | 176 | 53 | 240 | 1.67e-66 | 203 |
| MS.gene027784.t1 | AT2G22540 | 60.894 | 179 | 56 | 3 | 12 | 176 | 57 | 235 | 1.18e-65 | 201 |
| MS.gene027784.t1 | AT4G24540 | 47.429 | 175 | 78 | 6 | 3 | 173 | 53 | 217 | 2.40e-38 | 131 |
Find 49 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAAGGTCTCTTGAAAT+TGG | 0.157483 | 5.2:-22177363 | MS.gene027784:CDS |
| CCCTCATCTGCCTTAGTTGA+TGG | 0.253254 | 5.2:+22177427 | None:intergenic |
| GAATATTTCTAACCTTTCTT+TGG | 0.260465 | 5.2:+22177194 | None:intergenic |
| ACATTCCTTCAGCCGGCATA+TGG | 0.334671 | 5.2:+22175849 | None:intergenic |
| TATCTGAACTCTCATAATCT+TGG | 0.352501 | 5.2:+22176056 | None:intergenic |
| TGTGGAAGAATTACAACAAT+TGG | 0.369939 | 5.2:-22177382 | MS.gene027784:CDS |
| CTCAAAGAACCTCGCAAAGC+TGG | 0.379678 | 5.2:-22177697 | MS.gene027784:CDS |
| ATCTGAACTCTCATAATCTT+GGG | 0.383551 | 5.2:+22176057 | None:intergenic |
| TGGAAAGGTCTCTTGAAATT+GGG | 0.386838 | 5.2:-22177362 | MS.gene027784:CDS |
| AGAACCGTCTCTTGAGTTGC+AGG | 0.416179 | 5.2:-22177673 | MS.gene027784:intron |
| TCAGATACATCGCTCAAGTT+GGG | 0.436087 | 5.2:-22176040 | MS.gene027784:CDS |
| ATGATGGATCATAAGGTTGC+GGG | 0.443250 | 5.2:-22176184 | MS.gene027784:intron |
| AGGTCTCTTGAAATTGGGTT+GGG | 0.470008 | 5.2:-22177357 | MS.gene027784:CDS |
| TTCAGATACATCGCTCAAGT+TGG | 0.479254 | 5.2:-22176041 | MS.gene027784:CDS |
| CATTCCTTCAGCCGGCATAT+GGG | 0.480333 | 5.2:+22175850 | None:intergenic |
| GATCAATGATCTCCAAAGAA+AGG | 0.499633 | 5.2:-22177206 | MS.gene027784:intron |
| AGATCTTGAAGGTTTGAATG+TGG | 0.507969 | 5.2:-22177400 | MS.gene027784:CDS |
| AAGGTCTCTTGAAATTGGGT+TGG | 0.514161 | 5.2:-22177358 | MS.gene027784:CDS |
| CTAAGAAGAGCCATCAACTA+AGG | 0.516193 | 5.2:-22177437 | MS.gene027784:CDS |
| ATCATACATGTTGCTTTAGT+CGG | 0.530014 | 5.2:+22176372 | None:intergenic |
| ATAATCTTGGGGAGGACCAA+TGG | 0.530085 | 5.2:+22176069 | None:intergenic |
| ATGAGGGGAGAAGATCTTGA+AGG | 0.541103 | 5.2:-22177411 | MS.gene027784:CDS |
| CCATCAACTAAGGCAGATGA+GGG | 0.557552 | 5.2:-22177427 | MS.gene027784:CDS |
| CACACAAACATTCCTTCAGC+CGG | 0.558090 | 5.2:+22175842 | None:intergenic |
| TATGAGAATGTGGTTAATGA+AGG | 0.563013 | 5.2:-22176127 | MS.gene027784:CDS |
| TCAGGGAGAGAAGATCATGA+TGG | 0.564270 | 5.2:-22177230 | MS.gene027784:intron |
| CCTTGCTCAATCTAGAACAC+TGG | 0.565150 | 5.2:+22177466 | None:intergenic |
| ATTTGCAGGCTCCCATATGC+CGG | 0.566203 | 5.2:-22175861 | MS.gene027784:intron |
| GGCTCCCATATGCCGGCTGA+AGG | 0.566587 | 5.2:-22175854 | None:intergenic |
| GCCATCAACTAAGGCAGATG+AGG | 0.567486 | 5.2:-22177428 | MS.gene027784:CDS |
| ATGATTAACGACAGAATGGT+TGG | 0.571480 | 5.2:-22176160 | MS.gene027784:CDS |
| ACCAACGTTTACAACTCCAT+TGG | 0.576740 | 5.2:-22176085 | MS.gene027784:CDS |
| TCTGCAGGGAAGGCAACTGA+TGG | 0.577814 | 5.2:-22176405 | MS.gene027784:intron |
| AAGAATTACAACAATTGGAA+AGG | 0.580010 | 5.2:-22177377 | MS.gene027784:CDS |
| GGGCATGATTAACGACAGAA+TGG | 0.581587 | 5.2:-22176164 | MS.gene027784:CDS |
| AACGTTGGTGACAGATTCTG+AGG | 0.592708 | 5.2:+22176099 | None:intergenic |
| CAGATACATCGCTCAAGTTG+GGG | 0.603531 | 5.2:-22176039 | MS.gene027784:intron |
| ACGGTTCTTCCAGCTTTGCG+AGG | 0.603660 | 5.2:+22177688 | None:intergenic |
| TGTGTTATGATGAAGCGTGA+GGG | 0.617556 | 5.2:-22177745 | MS.gene027784:intron |
| CCAGTGTTCTAGATTGAGCA+AGG | 0.618951 | 5.2:-22177466 | MS.gene027784:CDS |
| TCTGAACTCTCATAATCTTG+GGG | 0.621502 | 5.2:+22176058 | None:intergenic |
| GGGCCGTGTAATAGAAAACA+AGG | 0.627922 | 5.2:-22177337 | MS.gene027784:intron |
| ATTAACGACAGAATGGTTGG+AGG | 0.640229 | 5.2:-22176157 | MS.gene027784:CDS |
| CCAACCTGCAACTCAAGAGA+CGG | 0.649927 | 5.2:+22177669 | None:intergenic |
| ACCAATGGAGTTGTAAACGT+TGG | 0.652128 | 5.2:+22176084 | None:intergenic |
| AGGTGATGAATATGAGAATG+TGG | 0.655081 | 5.2:-22176137 | MS.gene027784:CDS |
| GAACTCTCATAATCTTGGGG+AGG | 0.658116 | 5.2:+22176061 | None:intergenic |
| TTTATATAGCTAATGTTACA+CGG | 0.681862 | 5.2:-22178641 | MS.gene027784:intron |
| CATCAACTAAGGCAGATGAG+GGG | 0.714892 | 5.2:-22177426 | MS.gene027784:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr5.2:22176166-22176147 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr5.2:22176167-22176148 | None:intergenic | 0.0% |
| !! | AATAACAAAAGTTTAAAAAT+AGG | - | chr5.2:22177609-22177628 | MS.gene027784:intron | 10.0% |
| !! | TGTATTTGTAAAAAAAAAAT+TGG | - | chr5.2:22177642-22177661 | MS.gene027784:intron | 10.0% |
| !!! | ATCTTTTTTTTTTAACAAAA+TGG | - | chr5.2:22176059-22176078 | MS.gene027784:CDS | 10.0% |
| !!! | ATTTTGCTTATATTTTAAAA+CGG | - | chr5.2:22176284-22176303 | MS.gene027784:intron | 10.0% |
| !!! | TTTTTTTTTAATAATCAAAG+TGG | + | chr5.2:22177487-22177506 | None:intergenic | 10.0% |
| !! | AAAAAATTACTTGTATATGA+TGG | - | chr5.2:22178308-22178327 | MS.gene027784:intron | 15.0% |
| !! | AACATGTTAGTTATATTAAT+TGG | - | chr5.2:22177347-22177366 | MS.gene027784:CDS | 15.0% |
| !!! | AAATATCATTTTGTTTTTTC+AGG | - | chr5.2:22177260-22177279 | MS.gene027784:intron | 15.0% |
| !!! | AATATCATTTTGTTTTTTCA+GGG | - | chr5.2:22177261-22177280 | MS.gene027784:intron | 15.0% |
| !!! | AATGTTTTATTTGTTCATTT+TGG | + | chr5.2:22176927-22176946 | None:intergenic | 15.0% |
| !!! | ACTTTTACTAAAAATTGTAA+GGG | - | chr5.2:22177519-22177538 | MS.gene027784:intron | 15.0% |
| !!! | ATAAGCAAAATTTACTTTTT+AGG | + | chr5.2:22176275-22176294 | None:intergenic | 15.0% |
| !!! | ATCATTCATTGTTATTTATT+TGG | - | chr5.2:22176720-22176739 | MS.gene027784:intron | 15.0% |
| !!! | ATTAAAAAAAAAGTACTAGT+AGG | + | chr5.2:22177209-22177228 | None:intergenic | 15.0% |
| !!! | ATTTTACTTATATTTTGACA+CGG | + | chr5.2:22176177-22176196 | None:intergenic | 15.0% |
| !!! | TACTTTTACTAAAAATTGTA+AGG | - | chr5.2:22177518-22177537 | MS.gene027784:intron | 15.0% |
| !! | AAATTAATTGTTGTCATGTT+GGG | - | chr5.2:22175899-22175918 | MS.gene027784:intron | 20.0% |
| !! | ACACAATTTAATGTATGAAT+TGG | + | chr5.2:22177582-22177601 | None:intergenic | 20.0% |
| !! | GTAAAGTTATAACTAAAAAG+TGG | - | chr5.2:22176487-22176506 | MS.gene027784:intron | 20.0% |
| !! | TAAATTAATTGTTGTCATGT+TGG | - | chr5.2:22175898-22175917 | MS.gene027784:intron | 20.0% |
| !! | TAAGTGAACTAATAATAATG+TGG | + | chr5.2:22178512-22178531 | None:intergenic | 20.0% |
| !! | TTATTTGGTATAATTTGACT+TGG | - | chr5.2:22176735-22176754 | MS.gene027784:intron | 20.0% |
| !! | TTCAAAAAAATCCAATCAAA+CGG | - | chr5.2:22176669-22176688 | MS.gene027784:intron | 20.0% |
| !! | TTTATATAGCTAATGTTACA+CGG | - | chr5.2:22175867-22175886 | MS.gene027784:intron | 20.0% |
| !!! | AAACCAACTAATTTTTATGA+AGG | - | chr5.2:22176386-22176405 | MS.gene027784:CDS | 20.0% |
| !!! | AAAGTTTTTGAAAAGCTATT+AGG | - | chr5.2:22176007-22176026 | MS.gene027784:intron | 20.0% |
| !!! | AATGTAGAATTTCTTTTTGA+AGG | - | chr5.2:22178549-22178568 | MS.gene027784:intron | 20.0% |
| !!! | AATTATGCTTAGTTTTGTAT+TGG | - | chr5.2:22177955-22177974 | MS.gene027784:intron | 20.0% |
| !!! | AGGAATATCTTTTTATTTTG+AGG | - | chr5.2:22176027-22176046 | MS.gene027784:intron | 20.0% |
| !!! | AGTAAAAATTGGTTGTTTTA+GGG | + | chr5.2:22178080-22178099 | None:intergenic | 20.0% |
| ! | AAGAATTACAACAATTGGAA+AGG | - | chr5.2:22177131-22177150 | MS.gene027784:intron | 25.0% |
| ! | AATTAATTGTTGTCATGTTG+GGG | - | chr5.2:22175900-22175919 | MS.gene027784:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr5.2:22176392-22176411 | None:intergenic | 25.0% |
| ! | ATATATATATAGGGTTATGC+TGG | + | chr5.2:22176577-22176596 | None:intergenic | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr5.2:22176211-22176230 | MS.gene027784:intron | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | chr5.2:22176230-22176211 | None:intergenic | 25.0% |
| ! | GAAGCTAATTTAGATATATG+TGG | + | chr5.2:22178034-22178053 | None:intergenic | 25.0% |
| ! | TCAAAAAAATCCAATCAAAC+GGG | - | chr5.2:22176670-22176689 | MS.gene027784:intron | 25.0% |
| !! | CTTCTAAAAACAAAGAACTT+AGG | + | chr5.2:22175981-22176000 | None:intergenic | 25.0% |
| !! | GAATATTTCTAACCTTTCTT+TGG | + | chr5.2:22177317-22177336 | None:intergenic | 25.0% |
| !! | GACGTCAATATAAACAATTT+TGG | + | chr5.2:22177784-22177803 | None:intergenic | 25.0% |
| !!! | AGATTTGTGAACAACTTTTT+TGG | + | chr5.2:22177744-22177763 | None:intergenic | 25.0% |
| !!! | CAGTAAAAATTGGTTGTTTT+AGG | + | chr5.2:22178081-22178100 | None:intergenic | 25.0% |
| !!! | GTGTTATTTTAGAAGATAGA+TGG | + | chr5.2:22177867-22177886 | None:intergenic | 25.0% |
| !!! | TGCTTATATTTTAAAACGGA+GGG | - | chr5.2:22176288-22176307 | MS.gene027784:intron | 25.0% |
| !!! | TGGTGTATTTTAGCTATATA+GGG | + | chr5.2:22176557-22176576 | None:intergenic | 25.0% |
| !!! | TTGCTTATATTTTAAAACGG+AGG | - | chr5.2:22176287-22176306 | MS.gene027784:intron | 25.0% |
| ATCTGAACTCTCATAATCTT+GGG | + | chr5.2:22178454-22178473 | None:intergenic | 30.0% | |
| CTAAAAGACACCTTCATAAA+AGG | + | chr5.2:22176337-22176356 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATAATA+TGG | + | chr5.2:22176238-22176257 | None:intergenic | 30.0% | |
| TAAAATTCACACACACAAGT+GGG | + | chr5.2:22177827-22177846 | None:intergenic | 30.0% | |
| TATCTGAACTCTCATAATCT+TGG | + | chr5.2:22178455-22178474 | None:intergenic | 30.0% | |
| TATGAGAATGTGGTTAATGA+AGG | - | chr5.2:22178381-22178400 | MS.gene027784:intron | 30.0% | |
| TCTAAAAAATGTTCCAAGGA+TGG | + | chr5.2:22177546-22177565 | None:intergenic | 30.0% | |
| TGTGGAAGAATTACAACAAT+TGG | - | chr5.2:22177126-22177145 | MS.gene027784:intron | 30.0% | |
| TTAAAATTCACACACACAAG+TGG | + | chr5.2:22177828-22177847 | None:intergenic | 30.0% | |
| ! | CAATTTTTACTGAATCTGCA+GGG | - | chr5.2:22178089-22178108 | MS.gene027784:intron | 30.0% |
| !! | ATCATACATGTTGCTTTAGT+CGG | + | chr5.2:22178139-22178158 | None:intergenic | 30.0% |
| !! | ATTTAATTTGCTAGAGTCGA+TGG | - | chr5.2:22177379-22177398 | MS.gene027784:CDS | 30.0% |
| !! | CTTGTATATGATGGATCATA+AGG | - | chr5.2:22178317-22178336 | MS.gene027784:intron | 30.0% |
| !!! | AGACCTTGTTTTCTATTACA+CGG | + | chr5.2:22177177-22177196 | None:intergenic | 30.0% |
| !!! | ATCCTTGGAACATTTTTTAG+AGG | - | chr5.2:22177545-22177564 | MS.gene027784:intron | 30.0% |
| !!! | CTGGTGTATTTTAGCTATAT+AGG | + | chr5.2:22176558-22176577 | None:intergenic | 30.0% |
| !!! | TACTTATATTTTGACACGGA+GGG | + | chr5.2:22176173-22176192 | None:intergenic | 30.0% |
| !!! | TGTTTTAGGGATGAAAGTAA+GGG | + | chr5.2:22178067-22178086 | None:intergenic | 30.0% |
| !!! | TTACTTATATTTTGACACGG+AGG | + | chr5.2:22176174-22176193 | None:intergenic | 30.0% |
| !!! | TTGTTTTAGGGATGAAAGTA+AGG | + | chr5.2:22178068-22178087 | None:intergenic | 30.0% |
| !!! | TTTGTGAACAACTTTTTTGG+TGG | + | chr5.2:22177741-22177760 | None:intergenic | 30.0% |
| AAAATTCACACACACAAGTG+GGG | + | chr5.2:22177826-22177845 | None:intergenic | 35.0% | |
| ACATGATCGATGTCAACTTA+AGG | + | chr5.2:22176697-22176716 | None:intergenic | 35.0% | |
| AGATCTTGAAGGTTTGAATG+TGG | - | chr5.2:22177108-22177127 | MS.gene027784:intron | 35.0% | |
| AGGTGATGAATATGAGAATG+TGG | - | chr5.2:22178371-22178390 | MS.gene027784:intron | 35.0% | |
| ATGATTAACGACAGAATGGT+TGG | - | chr5.2:22178348-22178367 | MS.gene027784:intron | 35.0% | |
| CATGATCGATGTCAACTTAA+GGG | + | chr5.2:22176696-22176715 | None:intergenic | 35.0% | |
| CCTGCAGATTCAGTAAAAAT+TGG | + | chr5.2:22178091-22178110 | None:intergenic | 35.0% | |
| GATCAATGATCTCCAAAGAA+AGG | - | chr5.2:22177302-22177321 | MS.gene027784:intron | 35.0% | |
| TCTGAACTCTCATAATCTTG+GGG | + | chr5.2:22178453-22178472 | None:intergenic | 35.0% | |
| TGGAAAGGTCTCTTGAAATT+GGG | - | chr5.2:22177146-22177165 | MS.gene027784:intron | 35.0% | |
| TTGGAAAGGTCTCTTGAAAT+TGG | - | chr5.2:22177145-22177164 | MS.gene027784:intron | 35.0% | |
| ! | CCAATTTTTACTGAATCTGC+AGG | - | chr5.2:22178088-22178107 | MS.gene027784:intron | 35.0% |
| ! | CTAGAAGACACCTTTTATGA+AGG | - | chr5.2:22176324-22176343 | MS.gene027784:intron | 35.0% |
| ! | GACCTCTAAAAAATGTTCCA+AGG | + | chr5.2:22177550-22177569 | None:intergenic | 35.0% |
| ! | TTTTAGCAAGTTACACCTCA+AGG | + | chr5.2:22176521-22176540 | None:intergenic | 35.0% |
| !! | GTGTGTTTGAGTTTTCTAGT+CGG | - | chr5.2:22177697-22177716 | MS.gene027784:CDS | 35.0% |
| !! | TATGATGGATCATAAGGTTG+CGG | - | chr5.2:22178323-22178342 | MS.gene027784:intron | 35.0% |
| AAAGTGGAAATCACACCTTG+AGG | - | chr5.2:22176503-22176522 | MS.gene027784:intron | 40.0% | |
| AAATTGTAAGGGTCCATCCT+TGG | - | chr5.2:22177530-22177549 | MS.gene027784:intron | 40.0% | |
| AAGGTCTCTTGAAATTGGGT+TGG | - | chr5.2:22177150-22177169 | MS.gene027784:intron | 40.0% | |
| ACCAACGTTTACAACTCCAT+TGG | - | chr5.2:22178423-22178442 | MS.gene027784:intron | 40.0% | |
| ACCAATGGAGTTGTAAACGT+TGG | + | chr5.2:22178427-22178446 | None:intergenic | 40.0% | |
| AGGTCTCTTGAAATTGGGTT+GGG | - | chr5.2:22177151-22177170 | MS.gene027784:intron | 40.0% | |
| ATTAACGACAGAATGGTTGG+AGG | - | chr5.2:22178351-22178370 | MS.gene027784:intron | 40.0% | |
| CGCTTTCATGTACTATTTGC+AGG | - | chr5.2:22178633-22178652 | MS.gene027784:intron | 40.0% | |
| CTAAGAAGAGCCATCAACTA+AGG | - | chr5.2:22177071-22177090 | MS.gene027784:intron | 40.0% | |
| TCAGATACATCGCTCAAGTT+GGG | - | chr5.2:22178468-22178487 | MS.gene027784:intron | 40.0% | |
| TGTGTTATGATGAAGCGTGA+GGG | - | chr5.2:22176763-22176782 | MS.gene027784:intron | 40.0% | |
| TTCAGATACATCGCTCAAGT+TGG | - | chr5.2:22178467-22178486 | MS.gene027784:intron | 40.0% | |
| TTGTGTTATGATGAAGCGTG+AGG | - | chr5.2:22176762-22176781 | MS.gene027784:intron | 40.0% | |
| ! | TTTTACTGAATCTGCAGGGA+AGG | - | chr5.2:22178093-22178112 | MS.gene027784:intron | 40.0% |
| !! | ATGATGGATCATAAGGTTGC+GGG | - | chr5.2:22178324-22178343 | MS.gene027784:intron | 40.0% |
| !! | TAATTTGCTAGAGTCGATGG+AGG | - | chr5.2:22177382-22177401 | MS.gene027784:CDS | 40.0% |
| AACTTAAGGGCCCGTTTGAT+TGG | + | chr5.2:22176683-22176702 | None:intergenic | 45.0% | |
| ATAATCTTGGGGAGGACCAA+TGG | + | chr5.2:22178442-22178461 | None:intergenic | 45.0% | |
| ATGAGGGGAGAAGATCTTGA+AGG | - | chr5.2:22177097-22177116 | MS.gene027784:intron | 45.0% | |
| CATCAACTAAGGCAGATGAG+GGG | - | chr5.2:22177082-22177101 | MS.gene027784:intron | 45.0% | |
| CCATCAACTAAGGCAGATGA+GGG | - | chr5.2:22177081-22177100 | MS.gene027784:intron | 45.0% | |
| GAACTCTCATAATCTTGGGG+AGG | + | chr5.2:22178450-22178469 | None:intergenic | 45.0% | |
| GGGATGAAAGTAAGGGTTGT+AGG | + | chr5.2:22178060-22178079 | None:intergenic | 45.0% | |
| GGGCATGATTAACGACAGAA+TGG | - | chr5.2:22178344-22178363 | MS.gene027784:intron | 45.0% | |
| GGGCCGTGTAATAGAAAACA+AGG | - | chr5.2:22177171-22177190 | MS.gene027784:intron | 45.0% | |
| TCAGGGAGAGAAGATCATGA+TGG | - | chr5.2:22177278-22177297 | MS.gene027784:intron | 45.0% | |
| ! | CAGATACATCGCTCAAGTTG+GGG | - | chr5.2:22178469-22178488 | MS.gene027784:intron | 45.0% |
| ! | CCAGTGTTCTAGATTGAGCA+AGG | - | chr5.2:22177042-22177061 | MS.gene027784:intron | 45.0% |
| ! | CCTTGCTCAATCTAGAACAC+TGG | + | chr5.2:22177045-22177064 | None:intergenic | 45.0% |
| !! | AACGTTGGTGACAGATTCTG+AGG | + | chr5.2:22178412-22178431 | None:intergenic | 45.0% |
| ATTTGCAGGCTCCCATATGC+CGG | - | chr5.2:22178647-22178666 | MS.gene027784:CDS | 50.0% | |
| CCAACCTGCAACTCAAGAGA+CGG | + | chr5.2:22176842-22176861 | None:intergenic | 50.0% | |
| CCCTCATCTGCCTTAGTTGA+TGG | + | chr5.2:22177084-22177103 | None:intergenic | 50.0% | |
| CTCAAAGAACCTCGCAAAGC+TGG | - | chr5.2:22176811-22176830 | MS.gene027784:intron | 50.0% | |
| GCCATCAACTAAGGCAGATG+AGG | - | chr5.2:22177080-22177099 | MS.gene027784:intron | 50.0% | |
| ! | AGAACCGTCTCTTGAGTTGC+AGG | - | chr5.2:22176835-22176854 | MS.gene027784:intron | 50.0% |
| ACGGTTCTTCCAGCTTTGCG+AGG | + | chr5.2:22176823-22176842 | None:intergenic | 55.0% | |
| TCTGCAGGGAAGGCAACTGA+TGG | - | chr5.2:22178103-22178122 | MS.gene027784:intron | 55.0% | |
| TTGTCATGTTGGGGTGCGTC+TGG | - | chr5.2:22175909-22175928 | MS.gene027784:intron | 55.0% | |
| ! | CCGTCTCTTGAGTTGCAGGT+TGG | - | chr5.2:22176839-22176858 | MS.gene027784:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 22175857 | 22178673 | 22175857 | ID=MS.gene027784 |
| chr5.2 | mRNA | 22175857 | 22178673 | 22175857 | ID=MS.gene027784.t1;Parent=MS.gene027784 |
| chr5.2 | exon | 22178642 | 22178673 | 22178642 | ID=MS.gene027784.t1.exon1;Parent=MS.gene027784.t1 |
| chr5.2 | CDS | 22178642 | 22178673 | 22178642 | ID=cds.MS.gene027784.t1;Parent=MS.gene027784.t1 |
| chr5.2 | exon | 22177674 | 22177752 | 22177674 | ID=MS.gene027784.t1.exon2;Parent=MS.gene027784.t1 |
| chr5.2 | CDS | 22177674 | 22177752 | 22177674 | ID=cds.MS.gene027784.t1;Parent=MS.gene027784.t1 |
| chr5.2 | exon | 22177338 | 22177502 | 22177338 | ID=MS.gene027784.t1.exon3;Parent=MS.gene027784.t1 |
| chr5.2 | CDS | 22177338 | 22177502 | 22177338 | ID=cds.MS.gene027784.t1;Parent=MS.gene027784.t1 |
| chr5.2 | exon | 22177207 | 22177248 | 22177207 | ID=MS.gene027784.t1.exon4;Parent=MS.gene027784.t1 |
| chr5.2 | CDS | 22177207 | 22177248 | 22177207 | ID=cds.MS.gene027784.t1;Parent=MS.gene027784.t1 |
| chr5.2 | exon | 22176379 | 22176420 | 22176379 | ID=MS.gene027784.t1.exon5;Parent=MS.gene027784.t1 |
| chr5.2 | CDS | 22176379 | 22176420 | 22176379 | ID=cds.MS.gene027784.t1;Parent=MS.gene027784.t1 |
| chr5.2 | exon | 22176040 | 22176191 | 22176040 | ID=MS.gene027784.t1.exon6;Parent=MS.gene027784.t1 |
| chr5.2 | CDS | 22176040 | 22176191 | 22176040 | ID=cds.MS.gene027784.t1;Parent=MS.gene027784.t1 |
| chr5.2 | exon | 22175857 | 22175875 | 22175857 | ID=MS.gene027784.t1.exon7;Parent=MS.gene027784.t1 |
| chr5.2 | CDS | 22175857 | 22175875 | 22175857 | ID=cds.MS.gene027784.t1;Parent=MS.gene027784.t1 |
| Gene Sequence |
| Protein sequence |
