Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027875.t1 | RHN54855.1 | 99 | 297 | 3 | 0 | 1 | 297 | 2 | 298 | 1.80E-163 | 585.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027875.t1 | Q93XM7 | 76.0 | 300 | 69 | 1 | 1 | 297 | 1 | 300 | 2.3e-130 | 466.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027875.t1 | G7KF41 | 99.0 | 297 | 3 | 0 | 1 | 297 | 1 | 297 | 1.3e-163 | 585.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027875 | MS.gene24924 | PPI |
| MS.gene33379 | MS.gene027875 | PPI |
| MS.gene027875 | MS.gene052954 | PPI |
| MS.gene068250 | MS.gene027875 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027875.t1 | MTR_5g030530 | 98.990 | 297 | 3 | 0 | 1 | 297 | 1 | 297 | 0.0 | 597 |
| MS.gene027875.t1 | MTR_8g066975 | 84.848 | 297 | 45 | 0 | 1 | 297 | 1 | 297 | 0.0 | 519 |
| MS.gene027875.t1 | MTR_4g088545 | 35.256 | 312 | 176 | 9 | 1 | 297 | 1 | 301 | 1.48e-44 | 154 |
| MS.gene027875.t1 | MTR_2g102010 | 34.333 | 300 | 178 | 6 | 1 | 296 | 10 | 294 | 3.53e-43 | 150 |
| MS.gene027875.t1 | MTR_4g012850 | 32.180 | 289 | 178 | 6 | 6 | 291 | 14 | 287 | 3.42e-40 | 142 |
| MS.gene027875.t1 | MTR_4g088545 | 35.135 | 259 | 145 | 7 | 1 | 245 | 1 | 250 | 6.83e-35 | 127 |
| MS.gene027875.t1 | MTR_4g088545 | 27.979 | 193 | 127 | 4 | 106 | 293 | 10 | 195 | 6.61e-15 | 73.6 |
| MS.gene027875.t1 | MTR_4g088545 | 36.765 | 204 | 112 | 6 | 1 | 196 | 1 | 195 | 1.17e-29 | 113 |
| MS.gene027875.t1 | MTR_4g088545 | 27.979 | 193 | 127 | 4 | 106 | 293 | 10 | 195 | 2.11e-15 | 74.3 |
| MS.gene027875.t1 | MTR_8g027975 | 30.031 | 323 | 188 | 8 | 1 | 297 | 44 | 354 | 2.64e-29 | 114 |
| MS.gene027875.t1 | MTR_5g009500 | 29.245 | 318 | 189 | 7 | 4 | 297 | 34 | 339 | 3.59e-28 | 111 |
| MS.gene027875.t1 | MTR_5g009500 | 28.218 | 202 | 129 | 4 | 102 | 296 | 32 | 224 | 1.11e-12 | 67.8 |
| MS.gene027875.t1 | MTR_2g436930 | 28.840 | 319 | 186 | 10 | 9 | 296 | 16 | 324 | 1.25e-27 | 109 |
| MS.gene027875.t1 | MTR_7g109135 | 28.520 | 277 | 186 | 6 | 24 | 296 | 38 | 306 | 2.58e-26 | 105 |
| MS.gene027875.t1 | MTR_7g109135 | 29.940 | 167 | 110 | 2 | 111 | 275 | 25 | 186 | 7.29e-16 | 77.0 |
| MS.gene027875.t1 | MTR_4g119770 | 26.935 | 323 | 193 | 9 | 7 | 296 | 13 | 325 | 2.88e-25 | 103 |
| MS.gene027875.t1 | MTR_5g055410 | 28.571 | 280 | 182 | 8 | 24 | 296 | 37 | 305 | 1.15e-24 | 102 |
| MS.gene027875.t1 | MTR_5g055410 | 24.352 | 193 | 125 | 7 | 23 | 207 | 134 | 313 | 7.93e-11 | 62.4 |
| MS.gene027875.t1 | MTR_1g090330 | 27.437 | 277 | 190 | 6 | 24 | 297 | 30 | 298 | 2.14e-23 | 97.8 |
| MS.gene027875.t1 | MTR_1g090330 | 27.513 | 189 | 130 | 3 | 11 | 198 | 114 | 296 | 8.46e-15 | 73.6 |
| MS.gene027875.t1 | MTR_3g025800 | 27.469 | 324 | 190 | 13 | 4 | 297 | 24 | 332 | 5.88e-23 | 97.4 |
| MS.gene027875.t1 | MTR_1g087840 | 26.715 | 277 | 191 | 6 | 24 | 296 | 35 | 303 | 1.51e-22 | 95.5 |
| MS.gene027875.t1 | MTR_7g109135 | 28.814 | 236 | 156 | 6 | 65 | 296 | 1 | 228 | 2.76e-22 | 93.6 |
| MS.gene027875.t1 | MTR_4g114320 | 24.915 | 293 | 199 | 4 | 6 | 296 | 121 | 394 | 7.12e-22 | 94.7 |
| MS.gene027875.t1 | MTR_7g109135 | 27.076 | 277 | 183 | 6 | 24 | 296 | 38 | 299 | 2.45e-21 | 92.0 |
| MS.gene027875.t1 | MTR_7g109135 | 29.341 | 167 | 104 | 3 | 111 | 275 | 25 | 179 | 1.77e-12 | 67.0 |
| MS.gene027875.t1 | MTR_1g012030 | 26.756 | 299 | 186 | 7 | 6 | 296 | 137 | 410 | 3.90e-21 | 92.8 |
| MS.gene027875.t1 | MTR_3g104600 | 27.451 | 306 | 200 | 7 | 6 | 297 | 33 | 330 | 5.98e-21 | 91.7 |
| MS.gene027875.t1 | MTR_4g057850 | 29.021 | 286 | 178 | 9 | 10 | 286 | 24 | 293 | 2.12e-20 | 89.7 |
| MS.gene027875.t1 | MTR_4g057850 | 31.818 | 176 | 109 | 5 | 19 | 191 | 128 | 295 | 2.82e-16 | 78.2 |
| MS.gene027875.t1 | MTR_3g107510 | 25.510 | 294 | 196 | 6 | 6 | 296 | 120 | 393 | 2.53e-20 | 90.5 |
| MS.gene027875.t1 | MTR_8g098240 | 27.740 | 292 | 182 | 9 | 10 | 297 | 322 | 588 | 3.87e-20 | 90.9 |
| MS.gene027875.t1 | MTR_3g462140 | 30.742 | 283 | 171 | 10 | 24 | 296 | 31 | 298 | 4.92e-20 | 88.6 |
| MS.gene027875.t1 | MTR_3g462140 | 28.804 | 184 | 116 | 4 | 19 | 201 | 131 | 300 | 1.52e-15 | 75.9 |
| MS.gene027875.t1 | MTR_3g462140 | 28.019 | 207 | 139 | 6 | 96 | 296 | 4 | 206 | 8.28e-14 | 70.9 |
| MS.gene027875.t1 | MTR_7g066690 | 28.929 | 280 | 173 | 10 | 24 | 293 | 33 | 296 | 5.87e-20 | 88.2 |
| MS.gene027875.t1 | MTR_7g066690 | 26.020 | 196 | 132 | 2 | 4 | 199 | 117 | 299 | 4.53e-16 | 77.4 |
| MS.gene027875.t1 | MTR_7g066690 | 27.749 | 191 | 125 | 4 | 117 | 296 | 19 | 207 | 3.44e-14 | 72.0 |
| MS.gene027875.t1 | MTR_6g091800 | 24.667 | 300 | 209 | 6 | 5 | 296 | 16 | 306 | 8.24e-20 | 88.2 |
| MS.gene027875.t1 | MTR_4g018750 | 28.929 | 280 | 173 | 10 | 24 | 293 | 31 | 294 | 1.89e-19 | 86.7 |
| MS.gene027875.t1 | MTR_4g018750 | 26.000 | 200 | 133 | 3 | 1 | 198 | 110 | 296 | 5.75e-15 | 74.3 |
| MS.gene027875.t1 | MTR_4g018750 | 27.225 | 191 | 126 | 4 | 117 | 296 | 17 | 205 | 1.65e-14 | 72.8 |
| MS.gene027875.t1 | MTR_8g076760 | 26.316 | 285 | 179 | 11 | 23 | 290 | 29 | 299 | 2.44e-19 | 86.7 |
| MS.gene027875.t1 | MTR_8g076760 | 25.980 | 204 | 130 | 7 | 7 | 199 | 112 | 305 | 7.85e-13 | 68.2 |
| MS.gene027875.t1 | MTR_7g109135 | 29.245 | 212 | 138 | 6 | 89 | 296 | 4 | 207 | 5.63e-19 | 84.0 |
| MS.gene027875.t1 | MTR_6g034515 | 27.915 | 283 | 172 | 6 | 23 | 296 | 82 | 341 | 3.49e-18 | 84.0 |
| MS.gene027875.t1 | MTR_7g084400 | 26.421 | 299 | 184 | 9 | 8 | 296 | 213 | 485 | 6.43e-18 | 84.0 |
| MS.gene027875.t1 | MTR_3g104500 | 23.762 | 303 | 211 | 10 | 1 | 293 | 27 | 319 | 1.29e-17 | 82.0 |
| MS.gene027875.t1 | MTR_3g098460 | 26.821 | 302 | 188 | 10 | 5 | 296 | 202 | 480 | 4.00e-17 | 81.6 |
| MS.gene027875.t1 | MTR_2g436930 | 27.572 | 243 | 144 | 8 | 76 | 296 | 2 | 234 | 1.36e-16 | 77.8 |
| MS.gene027875.t1 | MTR_5g073040 | 28.094 | 299 | 178 | 12 | 8 | 294 | 39 | 312 | 2.18e-16 | 78.6 |
| MS.gene027875.t1 | MTR_6g091800 | 22.840 | 324 | 209 | 6 | 5 | 296 | 16 | 330 | 2.74e-16 | 78.2 |
| MS.gene027875.t1 | MTR_8g096050 | 26.578 | 301 | 190 | 8 | 5 | 296 | 224 | 502 | 6.20e-16 | 78.2 |
| MS.gene027875.t1 | MTR_1g097890 | 31.156 | 199 | 106 | 5 | 96 | 293 | 38 | 206 | 7.23e-16 | 77.0 |
| MS.gene027875.t1 | MTR_1g097890 | 31.606 | 193 | 113 | 4 | 8 | 200 | 132 | 305 | 2.03e-14 | 72.8 |
| MS.gene027875.t1 | MTR_1g097890 | 27.341 | 267 | 153 | 9 | 10 | 273 | 53 | 281 | 1.78e-12 | 67.0 |
| MS.gene027875.t1 | MTR_8g092080 | 31.000 | 200 | 107 | 5 | 95 | 293 | 38 | 207 | 1.54e-15 | 75.9 |
| MS.gene027875.t1 | MTR_8g092080 | 27.698 | 278 | 156 | 11 | 3 | 273 | 43 | 282 | 3.57e-13 | 69.3 |
| MS.gene027875.t1 | MTR_8g092080 | 29.064 | 203 | 125 | 4 | 8 | 210 | 133 | 316 | 1.03e-11 | 65.1 |
| MS.gene027875.t1 | MTR_1g088995 | 28.114 | 281 | 180 | 8 | 21 | 297 | 46 | 308 | 4.46e-15 | 74.7 |
| MS.gene027875.t1 | MTR_4g018750 | 27.225 | 191 | 126 | 4 | 117 | 296 | 17 | 205 | 1.64e-14 | 72.8 |
| MS.gene027875.t1 | MTR_4g018750 | 28.926 | 242 | 146 | 10 | 24 | 255 | 31 | 256 | 3.33e-14 | 71.6 |
| MS.gene027875.t1 | MTR_6g091800 | 25.311 | 241 | 166 | 5 | 5 | 240 | 16 | 247 | 1.98e-14 | 72.0 |
| MS.gene027875.t1 | MTR_6g091800 | 25.311 | 241 | 166 | 5 | 5 | 240 | 16 | 247 | 3.73e-14 | 71.6 |
| MS.gene027875.t1 | MTR_7g015870 | 26.644 | 289 | 177 | 11 | 23 | 293 | 40 | 311 | 4.69e-14 | 71.6 |
| MS.gene027875.t1 | MTR_3g100570 | 27.536 | 207 | 123 | 5 | 4 | 199 | 120 | 310 | 6.24e-14 | 71.2 |
| MS.gene027875.t1 | MTR_3g100570 | 23.397 | 312 | 200 | 8 | 14 | 296 | 9 | 310 | 5.48e-12 | 65.5 |
| MS.gene027875.t1 | MTR_4g119770 | 25.681 | 257 | 158 | 7 | 7 | 240 | 13 | 259 | 6.28e-14 | 70.5 |
| MS.gene027875.t1 | MTR_4g119770 | 26.368 | 201 | 131 | 6 | 104 | 290 | 7 | 204 | 3.30e-12 | 65.9 |
| MS.gene027875.t1 | MTR_7g015870 | 26.923 | 286 | 174 | 11 | 23 | 290 | 36 | 304 | 8.53e-14 | 71.2 |
| MS.gene027875.t1 | MTR_7g064980 | 25.126 | 199 | 136 | 4 | 3 | 200 | 129 | 315 | 1.13e-13 | 70.5 |
| MS.gene027875.t1 | MTR_5g081910 | 24.675 | 308 | 197 | 9 | 20 | 296 | 20 | 323 | 1.14e-13 | 70.9 |
| MS.gene027875.t1 | MTR_6g091800 | 22.408 | 299 | 191 | 6 | 5 | 271 | 16 | 305 | 7.37e-13 | 68.2 |
| MS.gene027875.t1 | MTR_7g068340 | 26.705 | 176 | 119 | 3 | 121 | 296 | 100 | 265 | 8.36e-13 | 68.6 |
| MS.gene027875.t1 | MTR_7g068340 | 24.014 | 279 | 183 | 9 | 24 | 297 | 103 | 357 | 5.02e-12 | 66.2 |
| MS.gene027875.t1 | MTR_6g092210 | 24.409 | 254 | 179 | 6 | 47 | 296 | 2 | 246 | 1.31e-12 | 66.6 |
| MS.gene027875.t1 | MTR_2g032610 | 23.311 | 296 | 199 | 9 | 11 | 291 | 32 | 314 | 1.88e-12 | 67.0 |
| MS.gene027875.t1 | MTR_8g068890 | 26.367 | 311 | 194 | 10 | 14 | 296 | 9 | 312 | 3.13e-12 | 66.2 |
| MS.gene027875.t1 | MTR_8g036880 | 26.042 | 288 | 193 | 9 | 2 | 279 | 96 | 373 | 4.06e-12 | 66.6 |
| MS.gene027875.t1 | MTR_5g032420 | 24.299 | 321 | 195 | 9 | 14 | 296 | 9 | 319 | 5.58e-12 | 65.9 |
| MS.gene027875.t1 | MTR_3g028590 | 26.148 | 283 | 188 | 9 | 7 | 279 | 96 | 367 | 6.70e-12 | 65.9 |
| MS.gene027875.t1 | MTR_3g028590 | 26.148 | 283 | 188 | 9 | 7 | 279 | 92 | 363 | 7.27e-12 | 65.9 |
| MS.gene027875.t1 | MTR_6g015860 | 24.828 | 290 | 181 | 11 | 23 | 293 | 32 | 303 | 1.13e-11 | 64.7 |
| MS.gene027875.t1 | MTR_5g081150 | 28.218 | 202 | 130 | 5 | 3 | 200 | 132 | 322 | 2.15e-11 | 63.9 |
| MS.gene027875.t1 | MTR_3g074490 | 26.316 | 266 | 163 | 8 | 51 | 296 | 151 | 403 | 3.54e-11 | 63.5 |
| MS.gene027875.t1 | MTR_8g086070 | 29.433 | 282 | 156 | 14 | 14 | 279 | 24 | 278 | 3.97e-11 | 63.2 |
| MS.gene027875.t1 | MTR_6g091800 | 23.019 | 265 | 166 | 5 | 5 | 240 | 16 | 271 | 4.04e-11 | 62.8 |
| MS.gene027875.t1 | MTR_7g084400 | 26.562 | 192 | 125 | 3 | 106 | 294 | 205 | 383 | 5.28e-11 | 63.2 |
| MS.gene027875.t1 | MTR_4g078545 | 25.597 | 293 | 198 | 10 | 7 | 290 | 74 | 355 | 5.55e-11 | 63.2 |
| MS.gene027875.t1 | MTR_6g091800 | 23.019 | 265 | 166 | 5 | 5 | 240 | 16 | 271 | 6.91e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027875.t1 | AT5G46800 | 76.000 | 300 | 69 | 1 | 1 | 297 | 1 | 300 | 5.01e-171 | 476 |
| MS.gene027875.t1 | AT5G46800 | 76.000 | 300 | 69 | 1 | 1 | 297 | 1 | 300 | 5.01e-171 | 476 |
| MS.gene027875.t1 | AT5G46800 | 76.000 | 300 | 69 | 1 | 1 | 297 | 1 | 300 | 5.01e-171 | 476 |
| MS.gene027875.t1 | AT2G33820 | 35.762 | 302 | 174 | 7 | 6 | 297 | 16 | 307 | 7.68e-50 | 167 |
| MS.gene027875.t1 | AT2G33820 | 25.366 | 205 | 139 | 6 | 95 | 293 | 5 | 201 | 3.07e-11 | 63.5 |
| MS.gene027875.t1 | AT2G33820 | 34.839 | 310 | 174 | 8 | 6 | 297 | 16 | 315 | 4.65e-47 | 160 |
| MS.gene027875.t1 | AT1G79900 | 32.852 | 277 | 151 | 8 | 22 | 291 | 30 | 278 | 2.98e-38 | 137 |
| MS.gene027875.t1 | AT2G33820 | 34.000 | 250 | 144 | 7 | 6 | 243 | 16 | 256 | 6.59e-35 | 127 |
| MS.gene027875.t1 | AT2G33820 | 25.366 | 205 | 139 | 6 | 95 | 293 | 5 | 201 | 4.20e-11 | 62.8 |
| MS.gene027875.t1 | AT2G33820 | 35.526 | 228 | 129 | 6 | 80 | 297 | 7 | 226 | 4.66e-33 | 121 |
| MS.gene027875.t1 | AT4G01100 | 28.972 | 321 | 190 | 8 | 3 | 297 | 37 | 345 | 7.26e-29 | 113 |
| MS.gene027875.t1 | AT4G01100 | 29.333 | 300 | 174 | 8 | 24 | 297 | 8 | 295 | 1.89e-27 | 108 |
| MS.gene027875.t1 | AT4G01100 | 27.761 | 335 | 190 | 8 | 3 | 297 | 37 | 359 | 2.46e-27 | 109 |
| MS.gene027875.t1 | AT5G48970 | 27.077 | 325 | 191 | 9 | 7 | 296 | 21 | 334 | 2.55e-26 | 106 |
| MS.gene027875.t1 | AT1G25380 | 29.927 | 274 | 177 | 8 | 24 | 291 | 37 | 301 | 2.97e-25 | 103 |
| MS.gene027875.t1 | AT1G25380 | 29.927 | 274 | 177 | 8 | 24 | 291 | 37 | 301 | 2.97e-25 | 103 |
| MS.gene027875.t1 | AT5G58970 | 31.560 | 282 | 169 | 10 | 24 | 296 | 32 | 298 | 5.03e-24 | 99.4 |
| MS.gene027875.t1 | AT5G58970 | 27.861 | 201 | 128 | 5 | 1 | 198 | 111 | 297 | 1.86e-16 | 78.6 |
| MS.gene027875.t1 | AT5G58970 | 25.980 | 204 | 143 | 4 | 98 | 296 | 6 | 206 | 1.41e-14 | 73.2 |
| MS.gene027875.t1 | AT3G21390 | 26.101 | 318 | 192 | 7 | 7 | 291 | 18 | 325 | 8.33e-23 | 96.7 |
| MS.gene027875.t1 | AT3G21390 | 26.101 | 318 | 192 | 7 | 7 | 291 | 40 | 347 | 1.07e-22 | 96.7 |
| MS.gene027875.t1 | AT3G54110 | 30.824 | 279 | 169 | 10 | 24 | 293 | 31 | 294 | 1.42e-22 | 95.5 |
| MS.gene027875.t1 | AT3G54110 | 27.861 | 201 | 131 | 3 | 1 | 199 | 109 | 297 | 6.74e-17 | 79.7 |
| MS.gene027875.t1 | AT3G54110 | 28.500 | 200 | 134 | 4 | 102 | 296 | 9 | 204 | 1.61e-15 | 75.9 |
| MS.gene027875.t1 | AT5G66380 | 26.756 | 299 | 193 | 9 | 6 | 290 | 8 | 294 | 4.31e-22 | 94.4 |
| MS.gene027875.t1 | AT5G66380 | 25.943 | 212 | 138 | 7 | 5 | 207 | 107 | 308 | 4.98e-14 | 71.6 |
| MS.gene027875.t1 | AT2G47490 | 27.076 | 277 | 189 | 7 | 24 | 296 | 33 | 300 | 7.86e-22 | 93.6 |
| MS.gene027875.t1 | AT4G11440 | 26.263 | 297 | 186 | 8 | 10 | 297 | 332 | 604 | 9.56e-22 | 95.5 |
| MS.gene027875.t1 | AT4G11440 | 26.263 | 297 | 186 | 8 | 10 | 297 | 332 | 604 | 9.56e-22 | 95.5 |
| MS.gene027875.t1 | AT5G01340 | 29.268 | 287 | 177 | 10 | 10 | 286 | 19 | 289 | 1.18e-20 | 90.5 |
| MS.gene027875.t1 | AT5G01340 | 31.250 | 176 | 111 | 5 | 19 | 191 | 123 | 291 | 3.01e-16 | 77.8 |
| MS.gene027875.t1 | AT1G14140 | 25.362 | 276 | 196 | 6 | 21 | 293 | 29 | 297 | 4.09e-20 | 89.0 |
| MS.gene027875.t1 | AT1G14140 | 33.696 | 184 | 106 | 7 | 117 | 293 | 28 | 202 | 2.39e-14 | 72.4 |
| MS.gene027875.t1 | AT1G14140 | 27.919 | 197 | 129 | 5 | 6 | 201 | 117 | 301 | 4.43e-11 | 62.8 |
| MS.gene027875.t1 | AT4G32400 | 26.974 | 304 | 179 | 8 | 6 | 296 | 112 | 385 | 4.95e-19 | 86.7 |
| MS.gene027875.t1 | AT5G61810 | 27.667 | 300 | 180 | 9 | 5 | 296 | 62 | 332 | 5.13e-19 | 86.3 |
| MS.gene027875.t1 | AT5G48970 | 25.641 | 273 | 166 | 7 | 50 | 296 | 2 | 263 | 5.48e-19 | 85.1 |
| MS.gene027875.t1 | AT1G07030 | 28.620 | 297 | 180 | 10 | 8 | 294 | 40 | 314 | 7.25e-19 | 85.5 |
| MS.gene027875.t1 | AT2G37890 | 26.246 | 301 | 201 | 5 | 6 | 296 | 43 | 332 | 1.01e-18 | 85.5 |
| MS.gene027875.t1 | AT2G37890 | 27.941 | 204 | 134 | 5 | 2 | 204 | 146 | 337 | 2.01e-14 | 73.2 |
| MS.gene027875.t1 | AT1G14560 | 25.850 | 294 | 181 | 9 | 24 | 296 | 43 | 320 | 3.02e-18 | 84.0 |
| MS.gene027875.t1 | AT5G61810 | 27.852 | 298 | 182 | 9 | 5 | 296 | 205 | 475 | 3.77e-18 | 84.7 |
| MS.gene027875.t1 | AT1G74240 | 27.445 | 317 | 194 | 10 | 4 | 296 | 32 | 336 | 8.49e-18 | 83.2 |
| MS.gene027875.t1 | AT5G42130 | 28.159 | 277 | 172 | 5 | 24 | 293 | 134 | 390 | 1.82e-17 | 82.4 |
| MS.gene027875.t1 | AT1G34065 | 33.000 | 200 | 115 | 5 | 8 | 207 | 156 | 336 | 3.81e-17 | 80.9 |
| MS.gene027875.t1 | AT1G34065 | 30.412 | 194 | 99 | 5 | 103 | 293 | 70 | 230 | 3.82e-13 | 69.3 |
| MS.gene027875.t1 | AT1G34065 | 27.444 | 266 | 149 | 11 | 14 | 273 | 78 | 305 | 1.06e-11 | 65.1 |
| MS.gene027875.t1 | AT1G34065 | 33.000 | 200 | 115 | 5 | 8 | 207 | 163 | 343 | 4.04e-17 | 80.9 |
| MS.gene027875.t1 | AT1G34065 | 30.890 | 191 | 96 | 5 | 106 | 293 | 80 | 237 | 3.72e-13 | 69.3 |
| MS.gene027875.t1 | AT1G34065 | 27.444 | 266 | 149 | 11 | 14 | 273 | 85 | 312 | 1.05e-11 | 65.1 |
| MS.gene027875.t1 | AT1G74240 | 27.517 | 298 | 180 | 10 | 23 | 296 | 3 | 288 | 6.67e-17 | 80.1 |
| MS.gene027875.t1 | AT2G30160 | 26.667 | 300 | 185 | 10 | 8 | 294 | 42 | 319 | 9.91e-17 | 79.7 |
| MS.gene027875.t1 | AT5G51050 | 26.621 | 293 | 191 | 7 | 8 | 296 | 223 | 495 | 3.28e-16 | 79.0 |
| MS.gene027875.t1 | AT4G26180 | 25.000 | 308 | 199 | 10 | 5 | 296 | 18 | 309 | 1.38e-15 | 76.3 |
| MS.gene027875.t1 | AT3G55640 | 24.262 | 305 | 196 | 8 | 3 | 290 | 33 | 319 | 3.34e-15 | 75.1 |
| MS.gene027875.t1 | AT3G55640 | 27.749 | 191 | 125 | 6 | 7 | 196 | 144 | 322 | 1.15e-13 | 70.9 |
| MS.gene027875.t1 | AT3G55640 | 28.351 | 194 | 127 | 5 | 107 | 294 | 37 | 224 | 2.97e-11 | 63.5 |
| MS.gene027875.t1 | AT3G55640 | 24.262 | 305 | 196 | 8 | 3 | 290 | 33 | 319 | 3.34e-15 | 75.1 |
| MS.gene027875.t1 | AT3G55640 | 27.749 | 191 | 125 | 6 | 7 | 196 | 144 | 322 | 1.15e-13 | 70.9 |
| MS.gene027875.t1 | AT3G55640 | 28.351 | 194 | 127 | 5 | 107 | 294 | 37 | 224 | 2.97e-11 | 63.5 |
| MS.gene027875.t1 | AT5G58970 | 25.980 | 204 | 143 | 4 | 98 | 296 | 6 | 206 | 7.82e-15 | 73.6 |
| MS.gene027875.t1 | AT5G58970 | 32.044 | 181 | 112 | 5 | 24 | 199 | 32 | 206 | 4.42e-14 | 71.2 |
| MS.gene027875.t1 | AT3G53940 | 25.817 | 306 | 196 | 9 | 6 | 296 | 71 | 360 | 8.88e-15 | 74.3 |
| MS.gene027875.t1 | AT3G53940 | 27.136 | 199 | 132 | 6 | 3 | 200 | 175 | 361 | 1.32e-14 | 73.9 |
| MS.gene027875.t1 | AT1G14560 | 25.651 | 269 | 163 | 9 | 24 | 271 | 43 | 295 | 9.01e-15 | 73.6 |
| MS.gene027875.t1 | AT4G39460 | 29.682 | 283 | 144 | 11 | 3 | 273 | 49 | 288 | 2.17e-14 | 72.8 |
| MS.gene027875.t1 | AT4G39460 | 30.319 | 188 | 101 | 4 | 103 | 290 | 53 | 210 | 1.34e-13 | 70.5 |
| MS.gene027875.t1 | AT4G39460 | 29.016 | 193 | 118 | 4 | 8 | 200 | 139 | 312 | 1.81e-11 | 64.3 |
| MS.gene027875.t1 | AT4G39460 | 29.682 | 283 | 144 | 11 | 3 | 273 | 49 | 288 | 2.17e-14 | 72.8 |
| MS.gene027875.t1 | AT4G39460 | 30.319 | 188 | 101 | 4 | 103 | 290 | 53 | 210 | 1.34e-13 | 70.5 |
| MS.gene027875.t1 | AT4G39460 | 29.016 | 193 | 118 | 4 | 8 | 200 | 139 | 312 | 1.81e-11 | 64.3 |
| MS.gene027875.t1 | AT4G39460 | 29.682 | 283 | 144 | 11 | 3 | 273 | 49 | 288 | 2.17e-14 | 72.8 |
| MS.gene027875.t1 | AT4G39460 | 30.319 | 188 | 101 | 4 | 103 | 290 | 53 | 210 | 1.34e-13 | 70.5 |
| MS.gene027875.t1 | AT4G39460 | 29.016 | 193 | 118 | 4 | 8 | 200 | 139 | 312 | 1.81e-11 | 64.3 |
| MS.gene027875.t1 | AT5G07320 | 24.820 | 278 | 180 | 8 | 24 | 297 | 225 | 477 | 2.25e-14 | 73.6 |
| MS.gene027875.t1 | AT4G24570 | 27.673 | 318 | 179 | 13 | 14 | 296 | 9 | 310 | 4.86e-14 | 71.6 |
| MS.gene027875.t1 | AT4G24570 | 24.631 | 203 | 130 | 4 | 3 | 199 | 125 | 310 | 6.51e-11 | 62.4 |
| MS.gene027875.t1 | AT5G15640 | 23.958 | 288 | 188 | 9 | 23 | 293 | 36 | 309 | 1.21e-13 | 70.5 |
| MS.gene027875.t1 | AT5G15640 | 23.958 | 288 | 188 | 9 | 23 | 293 | 43 | 316 | 1.37e-13 | 70.5 |
| MS.gene027875.t1 | AT5G56450 | 24.351 | 308 | 204 | 12 | 6 | 297 | 32 | 326 | 2.59e-13 | 69.7 |
| MS.gene027875.t1 | AT5G13490 | 26.829 | 287 | 190 | 9 | 3 | 279 | 83 | 359 | 2.89e-13 | 70.1 |
| MS.gene027875.t1 | AT5G13490 | 26.829 | 287 | 190 | 9 | 3 | 279 | 83 | 359 | 2.89e-13 | 70.1 |
| MS.gene027875.t1 | AT4G26180 | 25.088 | 283 | 180 | 10 | 5 | 271 | 18 | 284 | 8.12e-13 | 67.8 |
| MS.gene027875.t1 | AT5G01500 | 25.180 | 278 | 187 | 7 | 21 | 297 | 132 | 389 | 8.79e-13 | 68.6 |
| MS.gene027875.t1 | AT1G14560 | 26.829 | 205 | 127 | 5 | 108 | 296 | 25 | 222 | 9.05e-13 | 67.0 |
| MS.gene027875.t1 | AT1G14560 | 24.757 | 206 | 135 | 6 | 7 | 199 | 24 | 222 | 4.13e-11 | 62.4 |
| MS.gene027875.t1 | AT2G39970 | 25.574 | 305 | 184 | 13 | 20 | 290 | 20 | 315 | 1.62e-12 | 67.4 |
| MS.gene027875.t1 | AT3G51870 | 24.188 | 277 | 183 | 9 | 21 | 293 | 104 | 357 | 2.21e-12 | 67.4 |
| MS.gene027875.t1 | AT5G64970 | 26.667 | 270 | 159 | 8 | 50 | 296 | 45 | 298 | 3.07e-12 | 66.2 |
| MS.gene027875.t1 | AT5G64970 | 26.937 | 271 | 157 | 9 | 50 | 296 | 169 | 422 | 4.77e-12 | 66.2 |
| MS.gene027875.t1 | AT2G22500 | 27.461 | 193 | 104 | 7 | 21 | 198 | 136 | 307 | 7.20e-12 | 65.5 |
| MS.gene027875.t1 | AT5G17400 | 23.755 | 261 | 188 | 7 | 24 | 279 | 30 | 284 | 1.33e-11 | 64.3 |
| MS.gene027875.t1 | AT3G55640 | 28.351 | 194 | 127 | 5 | 107 | 294 | 37 | 224 | 1.77e-11 | 63.5 |
| MS.gene027875.t1 | AT3G55640 | 28.351 | 194 | 127 | 5 | 107 | 294 | 37 | 224 | 1.77e-11 | 63.5 |
| MS.gene027875.t1 | AT3G08580 | 25.436 | 287 | 194 | 9 | 3 | 279 | 79 | 355 | 3.00e-11 | 63.9 |
| MS.gene027875.t1 | AT3G08580 | 25.436 | 287 | 194 | 9 | 3 | 279 | 79 | 355 | 3.00e-11 | 63.9 |
| MS.gene027875.t1 | AT5G09470 | 27.835 | 194 | 126 | 4 | 8 | 199 | 151 | 332 | 7.69e-11 | 62.4 |
Find 92 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTGGAGCTTGACCTTTA+TGG | 0.202406 | 5.4:+20665097 | None:intergenic |
| CGCCAATGCAGCATGTTTCT+TGG | 0.216190 | 5.4:-20663562 | MS.gene027875:CDS |
| AAAGGTCTTTATAAAGGTTT+TGG | 0.282854 | 5.4:-20663609 | MS.gene027875:CDS |
| AGAGGTTCTCTGATGCTTTC+CGG | 0.300203 | 5.4:-20663774 | MS.gene027875:CDS |
| ATGCTTTCCGGAGGCTTGGC+TGG | 0.311514 | 5.4:-20663762 | MS.gene027875:CDS |
| CCAAACATTGCGGCATTTCC+AGG | 0.322024 | 5.4:+20663855 | None:intergenic |
| AAAGCTACTGAAGGGTTTAA+AGG | 0.332217 | 5.4:-20663627 | MS.gene027875:CDS |
| AAATCAGAAGGTGGTGTAAA+AGG | 0.339772 | 5.4:-20663918 | MS.gene027875:CDS |
| GACCTTACTGCTGGAACTAT+TGG | 0.348951 | 5.4:-20665158 | MS.gene027875:CDS |
| GGGTTTAAAGGTCTTTATAA+AGG | 0.355736 | 5.4:-20663615 | MS.gene027875:CDS |
| GGTCAGATTCCGAAATATTC+TGG | 0.368345 | 5.4:-20665056 | MS.gene027875:CDS |
| TCAATTGCACCAGAATATTT+CGG | 0.369063 | 5.4:+20665047 | None:intergenic |
| GAAGTGGTGTAGGCTGGCTT+TGG | 0.378224 | 5.4:+20665081 | None:intergenic |
| GCTGTCCTGTTTACAGTTAG+AGG | 0.393198 | 5.4:-20664936 | MS.gene027875:CDS |
| TCAATTGAACCAGAAAACTT+TGG | 0.403615 | 5.4:+20663666 | None:intergenic |
| TTCAGTAGGGCAAGCTAGAA+AGG | 0.416209 | 5.4:+20664821 | None:intergenic |
| TCTGATGCTTTCCGGAGGCT+TGG | 0.423725 | 5.4:-20663766 | MS.gene027875:CDS |
| GGAACACTTCTGCACATTGC+AGG | 0.431055 | 5.4:+20663585 | None:intergenic |
| CCTGGAAATGCCGCAATGTT+TGG | 0.431845 | 5.4:-20663855 | MS.gene027875:CDS |
| GTTTACAGTTAGAGGGCAAA+TGG | 0.443517 | 5.4:-20664928 | MS.gene027875:CDS |
| GCAACAAAGCAATTAATTGC+AGG | 0.446536 | 5.4:-20663822 | MS.gene027875:CDS |
| GAGATGACAAGATCAGCTTT+AGG | 0.446594 | 5.4:-20663534 | MS.gene027875:CDS |
| TTCTGATTTGAGAACATGTC+TGG | 0.450563 | 5.4:+20663932 | None:intergenic |
| TCATCCATTTGACACCATAA+AGG | 0.457483 | 5.4:-20665111 | MS.gene027875:CDS |
| ATAAATCAGCAGGTGGTTTG+TGG | 0.460439 | 5.4:-20664867 | MS.gene027875:CDS |
| CAAGGGGTTAGTCCCCACTA+TGG | 0.464944 | 5.4:-20663889 | MS.gene027875:CDS |
| TTTGCCCTCTAACTGTAAAC+AGG | 0.465311 | 5.4:+20664931 | None:intergenic |
| AGGTATTTCACGCGCCATAG+TGG | 0.475118 | 5.4:+20663875 | None:intergenic |
| AGCCAGCCTACACCACTTCC+TGG | 0.475356 | 5.4:-20665077 | MS.gene027875:CDS |
| CAAGAAACATGCTGCATTGG+CGG | 0.477691 | 5.4:+20663563 | None:intergenic |
| GACCAGGAAGTGGTGTAGGC+TGG | 0.492277 | 5.4:+20665075 | None:intergenic |
| GTGGTTTGTGGAGCTGCAGC+CGG | 0.496452 | 5.4:-20664855 | MS.gene027875:CDS |
| CTCCAATAGTTCCAGCAGTA+AGG | 0.497657 | 5.4:+20665156 | None:intergenic |
| AAGAAACATGCTGCATTGGC+GGG | 0.499177 | 5.4:+20663564 | None:intergenic |
| GGCGGATTATACAAAGGTAT+GGG | 0.499882 | 5.4:-20664990 | MS.gene027875:CDS |
| TAGAAAGGAAACAGAAAGTC+CGG | 0.500243 | 5.4:+20664836 | None:intergenic |
| TGTAAACAGGACAGCATTGA+AGG | 0.507591 | 5.4:+20664944 | None:intergenic |
| AGGCGGATTATACAAAGGTA+TGG | 0.510915 | 5.4:-20664991 | MS.gene027875:CDS |
| TTGACCTTTATGGTGTCAAA+TGG | 0.512260 | 5.4:+20665107 | None:intergenic |
| CAAAGTGCACTAGCTGGATC+AGG | 0.515504 | 5.4:-20663999 | MS.gene027875:CDS |
| AGCAGCTCCAGCCAAGCCTC+CGG | 0.518143 | 5.4:+20663755 | None:intergenic |
| CTGCATTTGATAAGTTCAGT+AGG | 0.523172 | 5.4:+20664807 | None:intergenic |
| ACAATTGCAGCTGAAGGTCC+AGG | 0.523676 | 5.4:-20665011 | MS.gene027875:CDS |
| CTACTGAACTTATCAAATGC+AGG | 0.524614 | 5.4:-20664806 | MS.gene027875:intron |
| GGTATTTCACGCGCCATAGT+GGG | 0.526034 | 5.4:+20663876 | None:intergenic |
| TGCCAAGAAACATGCTGCAT+TGG | 0.527075 | 5.4:+20663560 | None:intergenic |
| AGAAGGATAAAAGCTACTGA+AGG | 0.529939 | 5.4:-20663636 | MS.gene027875:CDS |
| CTTACTGCTGGAACTATTGG+AGG | 0.538872 | 5.4:-20665155 | MS.gene027875:CDS |
| ACACTCTTAATAACATCAGT+TGG | 0.538878 | 5.4:+20663714 | None:intergenic |
| ATACCTTTGTATAATCCGCC+TGG | 0.539426 | 5.4:+20664993 | None:intergenic |
| GCAACATTGGCAGTGAAATA+CGG | 0.540088 | 5.4:-20663972 | MS.gene027875:CDS |
| CAAGCACAAAGTGCACTAGC+TGG | 0.542970 | 5.4:-20664005 | MS.gene027875:CDS |
| TCAGATGGGAGATGTGGCTA+AGG | 0.553954 | 5.4:-20665180 | None:intergenic |
| GTGGCTAAGGACCTTACTGC+TGG | 0.553962 | 5.4:-20665167 | MS.gene027875:CDS |
| CTGTCCTGTTTACAGTTAGA+GGG | 0.554693 | 5.4:-20664935 | MS.gene027875:CDS |
| TGGATCAGGAACAGCAACAT+TGG | 0.556451 | 5.4:-20663985 | MS.gene027875:CDS |
| TGTCCTCACAATAAATCAGC+AGG | 0.556549 | 5.4:-20664877 | MS.gene027875:CDS |
| TTCGGAATCTGACCAGGAAG+TGG | 0.557357 | 5.4:+20665065 | None:intergenic |
| ACTATGGCGCGTGAAATACC+TGG | 0.562535 | 5.4:-20663873 | MS.gene027875:CDS |
| GTTCAATTGATGCTTTCAGA+AGG | 0.566746 | 5.4:-20663653 | MS.gene027875:CDS |
| GATACCTCTGAACTCGGTAG+AGG | 0.574095 | 5.4:-20663792 | MS.gene027875:CDS |
| GGGGCCGCACAACTGATAGT+TGG | 0.575353 | 5.4:-20665134 | MS.gene027875:CDS |
| GCATTGTTGAGGTCACATCC+TGG | 0.576675 | 5.4:-20664903 | MS.gene027875:CDS |
| GAATATTTCGGAATCTGACC+AGG | 0.578700 | 5.4:+20665059 | None:intergenic |
| TTTATTGTGAGGACATCGCC+AGG | 0.579003 | 5.4:+20664885 | None:intergenic |
| TGCATTTGATAAGTTCAGTA+GGG | 0.581238 | 5.4:+20664808 | None:intergenic |
| CCACCTGCTGATTTATTGTG+AGG | 0.581721 | 5.4:+20664874 | None:intergenic |
| GAAGGATAAAAGCTACTGAA+GGG | 0.583076 | 5.4:-20663635 | MS.gene027875:CDS |
| ACATGTCTGGCTACATCCAT+CGG | 0.595686 | 5.4:+20663945 | None:intergenic |
| TTACTGCTGGAACTATTGGA+GGG | 0.596917 | 5.4:-20665154 | MS.gene027875:CDS |
| AAGAAGACAATTGCAGCTGA+AGG | 0.598564 | 5.4:-20665017 | MS.gene027875:CDS |
| TCTACCGAGTTCAGAGGTAT+CGG | 0.601498 | 5.4:+20663794 | None:intergenic |
| TTCATATACACCAAACATTG+CGG | 0.607181 | 5.4:+20663845 | None:intergenic |
| AGACATGTTCTCAAATCAGA+AGG | 0.616745 | 5.4:-20663930 | MS.gene027875:CDS |
| TACTGCTGGAACTATTGGAG+GGG | 0.618483 | 5.4:-20665153 | MS.gene027875:CDS |
| ATCTGACCAGGAAGTGGTGT+AGG | 0.619871 | 5.4:+20665071 | None:intergenic |
| GGCAAATGGAAGCATTGTTG+AGG | 0.625965 | 5.4:-20664914 | MS.gene027875:CDS |
| GCGGATTATACAAAGGTATG+GGG | 0.640550 | 5.4:-20664989 | MS.gene027875:CDS |
| AGAACCTCTACCGAGTTCAG+AGG | 0.650113 | 5.4:+20663788 | None:intergenic |
| GTATTTCACGCGCCATAGTG+GGG | 0.652213 | 5.4:+20663877 | None:intergenic |
| CATGTTCTCAAATCAGAAGG+TGG | 0.657123 | 5.4:-20663927 | MS.gene027875:CDS |
| GGCACCGATACCTCTGAACT+CGG | 0.657541 | 5.4:-20663798 | MS.gene027875:CDS |
| ACAAAGCAATTAATTGCAGG+AGG | 0.657726 | 5.4:-20663819 | MS.gene027875:CDS |
| CGGATTATACAAAGGTATGG+GGG | 0.659055 | 5.4:-20664988 | MS.gene027875:CDS |
| AGTGAAATACGGTGGACCGA+TGG | 0.659920 | 5.4:-20663961 | MS.gene027875:CDS |
| GGTTCTCTGATGCTTTCCGG+AGG | 0.681688 | 5.4:-20663771 | MS.gene027875:CDS |
| CCTCACAATAAATCAGCAGG+TGG | 0.684378 | 5.4:-20664874 | MS.gene027875:CDS |
| ATGACCAACTATCAGTTGTG+CGG | 0.697243 | 5.4:+20665130 | None:intergenic |
| GGTCCAGGCGGATTATACAA+AGG | 0.698858 | 5.4:-20664996 | MS.gene027875:CDS |
| AAGGCAGCTACTGTTGCAAG+TGG | 0.709145 | 5.4:+20664963 | None:intergenic |
| ACATTGGCAGTGAAATACGG+TGG | 0.717423 | 5.4:-20663969 | MS.gene027875:CDS |
| ATTGCAGCTGAAGGTCCAGG+CGG | 0.756596 | 5.4:-20665008 | MS.gene027875:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATAATAATGTGAAA+AGG | + | chr5.4:20664623-20664642 | None:intergenic | 10.0% |
| !!! | ATTTTATTAAGATTGAACCA+GGG | + | chr5.4:20664135-20664154 | None:intergenic | 20.0% |
| ! | AAATGTAATCATTTCTCTCA+TGG | - | chr5.4:20664524-20664543 | MS.gene027875:intron | 25.0% |
| ! | AATCTCTGATTAATCTCTTT+AGG | - | chr5.4:20664487-20664506 | MS.gene027875:intron | 25.0% |
| ! | ATAATGTGAAAAGGAAATTC+AGG | + | chr5.4:20664614-20664633 | None:intergenic | 25.0% |
| ! | ATGTATGTATGTATGTATGT+TGG | + | chr5.4:20664322-20664341 | None:intergenic | 25.0% |
| ! | CTTTCTATTATTCAAGCTTA+GGG | - | chr5.4:20664225-20664244 | MS.gene027875:intron | 25.0% |
| ! | TGTATGTATGTATGTATGTT+GGG | + | chr5.4:20664321-20664340 | None:intergenic | 25.0% |
| !! | AAAGGTCTTTATAAAGGTTT+TGG | - | chr5.4:20665097-20665116 | MS.gene027875:CDS | 25.0% |
| !! | CATTTTATTAAGATTGAACC+AGG | + | chr5.4:20664136-20664155 | None:intergenic | 25.0% |
| !! | TACAAAAATCCAAAGTTTTC+TGG | - | chr5.4:20665031-20665050 | MS.gene027875:CDS | 25.0% |
| !! | TTTTATTAAGATTGAACCAG+GGG | + | chr5.4:20664134-20664153 | None:intergenic | 25.0% |
| AACTAAATATGATGAACACC+AGG | - | chr5.4:20664675-20664694 | MS.gene027875:intron | 30.0% | |
| ACACTCTTAATAACATCAGT+TGG | + | chr5.4:20664995-20665014 | None:intergenic | 30.0% | |
| CCTAAGCTTGAATAATAGAA+AGG | + | chr5.4:20664227-20664246 | None:intergenic | 30.0% | |
| CCTTTCTATTATTCAAGCTT+AGG | - | chr5.4:20664224-20664243 | MS.gene027875:intron | 30.0% | |
| CTAGAAAGTTATTACATGAC+AGG | + | chr5.4:20663970-20663989 | None:intergenic | 30.0% | |
| GAAGATACGATATTTGATCA+AGG | - | chr5.4:20664164-20664183 | MS.gene027875:intron | 30.0% | |
| GGGTTTAAAGGTCTTTATAA+AGG | - | chr5.4:20665091-20665110 | MS.gene027875:CDS | 30.0% | |
| TAACGACTTGAACTAGATAT+TGG | - | chr5.4:20664429-20664448 | MS.gene027875:intron | 30.0% | |
| TAGAGAACAAGACTAAACAA+AGG | + | chr5.4:20664003-20664022 | None:intergenic | 30.0% | |
| TCAATTGAACCAGAAAACTT+TGG | + | chr5.4:20665043-20665062 | None:intergenic | 30.0% | |
| TCAATTGCACCAGAATATTT+CGG | + | chr5.4:20663662-20663681 | None:intergenic | 30.0% | |
| TGCATTTGATAAGTTCAGTA+GGG | + | chr5.4:20663901-20663920 | None:intergenic | 30.0% | |
| TTCATATACACCAAACATTG+CGG | + | chr5.4:20664864-20664883 | None:intergenic | 30.0% | |
| ! | AATATCTAGTTCAAGTCGTT+AGG | + | chr5.4:20664430-20664449 | None:intergenic | 30.0% |
| ! | GATTATTAGAATCTGAGATC+AGG | + | chr5.4:20664471-20664490 | None:intergenic | 30.0% |
| ! | TATAGTCTTTTCTCTTCACA+AGG | - | chr5.4:20664394-20664413 | MS.gene027875:intron | 30.0% |
| ! | TGGCTCATAATTTACTGATT+AGG | + | chr5.4:20664296-20664315 | None:intergenic | 30.0% |
| AAAGCTACTGAAGGGTTTAA+AGG | - | chr5.4:20665079-20665098 | MS.gene027875:CDS | 35.0% | |
| AAATCAGAAGGTGGTGTAAA+AGG | - | chr5.4:20664788-20664807 | MS.gene027875:intron | 35.0% | |
| ACAAAGCAATTAATTGCAGG+AGG | - | chr5.4:20664887-20664906 | MS.gene027875:CDS | 35.0% | |
| AGAAGGATAAAAGCTACTGA+AGG | - | chr5.4:20665070-20665089 | MS.gene027875:CDS | 35.0% | |
| AGACATGTTCTCAAATCAGA+AGG | - | chr5.4:20664776-20664795 | MS.gene027875:intron | 35.0% | |
| ATATTGGACGTAGTAGAGTT+AGG | - | chr5.4:20664445-20664464 | MS.gene027875:intron | 35.0% | |
| CTACTGAACTTATCAAATGC+AGG | - | chr5.4:20663900-20663919 | MS.gene027875:CDS | 35.0% | |
| CTGCATTTGATAAGTTCAGT+AGG | + | chr5.4:20663902-20663921 | None:intergenic | 35.0% | |
| CTGTTCTAACAATATCTCCA+CGG | + | chr5.4:20664109-20664128 | None:intergenic | 35.0% | |
| GAAGGATAAAAGCTACTGAA+GGG | - | chr5.4:20665071-20665090 | MS.gene027875:CDS | 35.0% | |
| GCAACAAAGCAATTAATTGC+AGG | - | chr5.4:20664884-20664903 | MS.gene027875:CDS | 35.0% | |
| GTATGTATGTATGTTGGGTA+TGG | + | chr5.4:20664316-20664335 | None:intergenic | 35.0% | |
| GTTCAATTGATGCTTTCAGA+AGG | - | chr5.4:20665053-20665072 | MS.gene027875:CDS | 35.0% | |
| TAGAAAGGAAACAGAAAGTC+CGG | + | chr5.4:20663873-20663892 | None:intergenic | 35.0% | |
| TCATCCATTTGACACCATAA+AGG | - | chr5.4:20663595-20663614 | MS.gene027875:CDS | 35.0% | |
| TGTTCTAACAATATCTCCAC+GGG | + | chr5.4:20664108-20664127 | None:intergenic | 35.0% | |
| ! | CTCTTTAGGTGCTCATTTTA+AGG | - | chr5.4:20664501-20664520 | MS.gene027875:intron | 35.0% |
| ! | GGTGTAAAAGGTCTTTTCAA+GGG | - | chr5.4:20664800-20664819 | MS.gene027875:intron | 35.0% |
| ! | TGGTGTAAAAGGTCTTTTCA+AGG | - | chr5.4:20664799-20664818 | MS.gene027875:intron | 35.0% |
| ! | TTCTGATTTGAGAACATGTC+TGG | + | chr5.4:20664777-20664796 | None:intergenic | 35.0% |
| ! | TTGACCTTTATGGTGTCAAA+TGG | + | chr5.4:20663602-20663621 | None:intergenic | 35.0% |
| !! | GTGTAAAAGGTCTTTTCAAG+GGG | - | chr5.4:20664801-20664820 | MS.gene027875:intron | 35.0% |
| AAGAAGACAATTGCAGCTGA+AGG | - | chr5.4:20663689-20663708 | MS.gene027875:CDS | 40.0% | |
| ATAAATCAGCAGGTGGTTTG+TGG | - | chr5.4:20663839-20663858 | MS.gene027875:CDS | 40.0% | |
| ATACCTTTGTATAATCCGCC+TGG | + | chr5.4:20663716-20663735 | None:intergenic | 40.0% | |
| ATGACCAACTATCAGTTGTG+CGG | + | chr5.4:20663579-20663598 | None:intergenic | 40.0% | |
| CAAATCAGAAAGATCACCAG+TGG | + | chr5.4:20663933-20663952 | None:intergenic | 40.0% | |
| CATGTTCTCAAATCAGAAGG+TGG | - | chr5.4:20664779-20664798 | MS.gene027875:intron | 40.0% | |
| CTGTCCTGTTTACAGTTAGA+GGG | - | chr5.4:20663771-20663790 | MS.gene027875:CDS | 40.0% | |
| GAATATTTCGGAATCTGACC+AGG | + | chr5.4:20663650-20663669 | None:intergenic | 40.0% | |
| GAGATGACAAGATCAGCTTT+AGG | - | chr5.4:20665172-20665191 | MS.gene027875:CDS | 40.0% | |
| GCAACATTGGCAGTGAAATA+CGG | - | chr5.4:20664734-20664753 | MS.gene027875:intron | 40.0% | |
| GCAAGTCAGAGTTATTCTCA+TGG | + | chr5.4:20664569-20664588 | None:intergenic | 40.0% | |
| GGTCAGATTCCGAAATATTC+TGG | - | chr5.4:20663650-20663669 | MS.gene027875:CDS | 40.0% | |
| GTTTACAGTTAGAGGGCAAA+TGG | - | chr5.4:20663778-20663797 | MS.gene027875:CDS | 40.0% | |
| TGTCCTCACAATAAATCAGC+AGG | - | chr5.4:20663829-20663848 | MS.gene027875:CDS | 40.0% | |
| TTACTGCTGGAACTATTGGA+GGG | - | chr5.4:20663552-20663571 | MS.gene027875:CDS | 40.0% | |
| TTTGCCCTCTAACTGTAAAC+AGG | + | chr5.4:20663778-20663797 | None:intergenic | 40.0% | |
| ! | CGGATTATACAAAGGTATGG+GGG | - | chr5.4:20663718-20663737 | MS.gene027875:CDS | 40.0% |
| ! | GCGGATTATACAAAGGTATG+GGG | - | chr5.4:20663717-20663736 | MS.gene027875:CDS | 40.0% |
| ! | TCTAAAGCATGGACAAATGC+AGG | + | chr5.4:20664049-20664068 | None:intergenic | 40.0% |
| ! | TCTTTTCTCTTCACAAGGTG+TGG | - | chr5.4:20664399-20664418 | MS.gene027875:intron | 40.0% |
| ! | TGTAAACAGGACAGCATTGA+AGG | + | chr5.4:20663765-20663784 | None:intergenic | 40.0% |
| !! | AGGCGGATTATACAAAGGTA+TGG | - | chr5.4:20663715-20663734 | MS.gene027875:CDS | 40.0% |
| !! | GGCGGATTATACAAAGGTAT+GGG | - | chr5.4:20663716-20663735 | MS.gene027875:CDS | 40.0% |
| !!! | TGGAGCTGCTTTTTGGTTTA+TGG | - | chr5.4:20664964-20664983 | MS.gene027875:CDS | 40.0% |
| AAAGCATGGACAAATGCAGG+TGG | + | chr5.4:20664046-20664065 | None:intergenic | 45.0% | |
| AAATGCAGGTTAGATGCCAC+TGG | - | chr5.4:20663914-20663933 | MS.gene027875:CDS | 45.0% | |
| ACATGTCTGGCTACATCCAT+CGG | + | chr5.4:20664764-20664783 | None:intergenic | 45.0% | |
| ACATTGGCAGTGAAATACGG+TGG | - | chr5.4:20664737-20664756 | MS.gene027875:intron | 45.0% | |
| ACTGATTAGGTCGCTCATGT+GGG | + | chr5.4:20664283-20664302 | None:intergenic | 45.0% | |
| AGAGGTTCTCTGATGCTTTC+CGG | - | chr5.4:20664932-20664951 | MS.gene027875:CDS | 45.0% | |
| CAAGAAACATGCTGCATTGG+CGG | + | chr5.4:20665146-20665165 | None:intergenic | 45.0% | |
| CCTCACAATAAATCAGCAGG+TGG | - | chr5.4:20663832-20663851 | MS.gene027875:CDS | 45.0% | |
| CTCCAATAGTTCCAGCAGTA+AGG | + | chr5.4:20663553-20663572 | None:intergenic | 45.0% | |
| CTTACTGCTGGAACTATTGG+AGG | - | chr5.4:20663551-20663570 | MS.gene027875:CDS | 45.0% | |
| GACCTTACTGCTGGAACTAT+TGG | - | chr5.4:20663548-20663567 | MS.gene027875:CDS | 45.0% | |
| GCTGTCCTGTTTACAGTTAG+AGG | - | chr5.4:20663770-20663789 | MS.gene027875:CDS | 45.0% | |
| GTGGGTGAGTAGTTAAACAC+AGG | + | chr5.4:20664265-20664284 | None:intergenic | 45.0% | |
| TACTGCTGGAACTATTGGAG+GGG | - | chr5.4:20663553-20663572 | MS.gene027875:CDS | 45.0% | |
| TATTGTTAGAACAGCACCCC+TGG | - | chr5.4:20664115-20664134 | MS.gene027875:intron | 45.0% | |
| TGCACTTTGTGCTTGTAACC+TGG | + | chr5.4:20664696-20664715 | None:intergenic | 45.0% | |
| TGCCAAGAAACATGCTGCAT+TGG | + | chr5.4:20665149-20665168 | None:intergenic | 45.0% | |
| TGGATCAGGAACAGCAACAT+TGG | - | chr5.4:20664721-20664740 | MS.gene027875:intron | 45.0% | |
| TTCAGTAGGGCAAGCTAGAA+AGG | + | chr5.4:20663888-20663907 | None:intergenic | 45.0% | |
| TTTATTGTGAGGACATCGCC+AGG | + | chr5.4:20663824-20663843 | None:intergenic | 45.0% | |
| ! | AAGAAACATGCTGCATTGGC+GGG | + | chr5.4:20665145-20665164 | None:intergenic | 45.0% |
| ! | GTCTAAGACGCATGCATGAT+CGG | + | chr5.4:20664197-20664216 | None:intergenic | 45.0% |
| ! | TACTGATTAGGTCGCTCATG+TGG | + | chr5.4:20664284-20664303 | None:intergenic | 45.0% |
| ! | TCTACCGAGTTCAGAGGTAT+CGG | + | chr5.4:20664915-20664934 | None:intergenic | 45.0% |
| !! | CCACCTGCTGATTTATTGTG+AGG | + | chr5.4:20663835-20663854 | None:intergenic | 45.0% |
| !! | GCTTTGGAGCTTGACCTTTA+TGG | + | chr5.4:20663612-20663631 | None:intergenic | 45.0% |
| !! | GGCAAATGGAAGCATTGTTG+AGG | - | chr5.4:20663792-20663811 | MS.gene027875:CDS | 45.0% |
| AAGGCAGCTACTGTTGCAAG+TGG | + | chr5.4:20663746-20663765 | None:intergenic | 50.0% | |
| ACAATTGCAGCTGAAGGTCC+AGG | - | chr5.4:20663695-20663714 | MS.gene027875:CDS | 50.0% | |
| ACTATGGCGCGTGAAATACC+TGG | - | chr5.4:20664833-20664852 | MS.gene027875:CDS | 50.0% | |
| AGAACCTCTACCGAGTTCAG+AGG | + | chr5.4:20664921-20664940 | None:intergenic | 50.0% | |
| AGGTATTTCACGCGCCATAG+TGG | + | chr5.4:20664834-20664853 | None:intergenic | 50.0% | |
| AGTGAAATACGGTGGACCGA+TGG | - | chr5.4:20664745-20664764 | MS.gene027875:intron | 50.0% | |
| ATCTGACCAGGAAGTGGTGT+AGG | + | chr5.4:20663638-20663657 | None:intergenic | 50.0% | |
| CAAAGTGCACTAGCTGGATC+AGG | - | chr5.4:20664707-20664726 | MS.gene027875:intron | 50.0% | |
| CAAGCACAAAGTGCACTAGC+TGG | - | chr5.4:20664701-20664720 | MS.gene027875:intron | 50.0% | |
| CCAAACATTGCGGCATTTCC+AGG | + | chr5.4:20664854-20664873 | None:intergenic | 50.0% | |
| CCTGGAAATGCCGCAATGTT+TGG | - | chr5.4:20664851-20664870 | MS.gene027875:CDS | 50.0% | |
| CGCCAATGCAGCATGTTTCT+TGG | - | chr5.4:20665144-20665163 | MS.gene027875:CDS | 50.0% | |
| GATACCTCTGAACTCGGTAG+AGG | - | chr5.4:20664914-20664933 | MS.gene027875:CDS | 50.0% | |
| GCATTGTTGAGGTCACATCC+TGG | - | chr5.4:20663803-20663822 | MS.gene027875:CDS | 50.0% | |
| GGAACACTTCTGCACATTGC+AGG | + | chr5.4:20665124-20665143 | None:intergenic | 50.0% | |
| GGTATTTCACGCGCCATAGT+GGG | + | chr5.4:20664833-20664852 | None:intergenic | 50.0% | |
| GTATTTCACGCGCCATAGTG+GGG | + | chr5.4:20664832-20664851 | None:intergenic | 50.0% | |
| TTCGGAATCTGACCAGGAAG+TGG | + | chr5.4:20663644-20663663 | None:intergenic | 50.0% | |
| ! | ACGCTGGGACATCTAAAGCA+TGG | + | chr5.4:20664060-20664079 | None:intergenic | 50.0% |
| ! | AGAGGTGTGTTGATATCCCG+TGG | - | chr5.4:20664089-20664108 | MS.gene027875:intron | 50.0% |
| !! | GGTCCAGGCGGATTATACAA+AGG | - | chr5.4:20663710-20663729 | MS.gene027875:CDS | 50.0% |
| ATTGCAGCTGAAGGTCCAGG+CGG | - | chr5.4:20663698-20663717 | MS.gene027875:CDS | 55.0% | |
| GGTTCTCTGATGCTTTCCGG+AGG | - | chr5.4:20664935-20664954 | MS.gene027875:CDS | 55.0% | |
| GTGGCTAAGGACCTTACTGC+TGG | - | chr5.4:20663539-20663558 | MS.gene027875:CDS | 55.0% | |
| TCTGATGCTTTCCGGAGGCT+TGG | - | chr5.4:20664940-20664959 | MS.gene027875:CDS | 55.0% | |
| !! | CAAGGGGTTAGTCCCCACTA+TGG | - | chr5.4:20664817-20664836 | MS.gene027875:CDS | 55.0% |
| !! | GAAGTGGTGTAGGCTGGCTT+TGG | + | chr5.4:20663628-20663647 | None:intergenic | 55.0% |
| !! | GGCACCGATACCTCTGAACT+CGG | - | chr5.4:20664908-20664927 | MS.gene027875:CDS | 55.0% |
| !!! | GCTTGGCTGGAGCTGCTTTT+TGG | - | chr5.4:20664957-20664976 | MS.gene027875:CDS | 55.0% |
| ACCTCTCACGCAGACACGCT+GGG | + | chr5.4:20664075-20664094 | None:intergenic | 60.0% | |
| AGCCAGCCTACACCACTTCC+TGG | - | chr5.4:20663629-20663648 | MS.gene027875:CDS | 60.0% | |
| ATGCTTTCCGGAGGCTTGGC+TGG | - | chr5.4:20664944-20664963 | MS.gene027875:CDS | 60.0% | |
| GACCAGGAAGTGGTGTAGGC+TGG | + | chr5.4:20663634-20663653 | None:intergenic | 60.0% | |
| GGGGCCGCACAACTGATAGT+TGG | - | chr5.4:20663572-20663591 | MS.gene027875:CDS | 60.0% | |
| ! | GTGGTTTGTGGAGCTGCAGC+CGG | - | chr5.4:20663851-20663870 | MS.gene027875:CDS | 60.0% |
| AGCAGCTCCAGCCAAGCCTC+CGG | + | chr5.4:20664954-20664973 | None:intergenic | 65.0% | |
| CACCTCTCACGCAGACACGC+TGG | + | chr5.4:20664076-20664095 | None:intergenic | 65.0% | |
| TCCCAGCGTGTCTGCGTGAG+AGG | - | chr5.4:20664071-20664090 | MS.gene027875:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 20663530 | 20665198 | 20663530 | ID=MS.gene027875 |
| chr5.4 | mRNA | 20663530 | 20665198 | 20663530 | ID=MS.gene027875.t1;Parent=MS.gene027875 |
| chr5.4 | exon | 20664807 | 20665198 | 20664807 | ID=MS.gene027875.t1.exon1;Parent=MS.gene027875.t1 |
| chr5.4 | CDS | 20664807 | 20665198 | 20664807 | ID=cds.MS.gene027875.t1;Parent=MS.gene027875.t1 |
| chr5.4 | exon | 20663530 | 20664031 | 20663530 | ID=MS.gene027875.t1.exon2;Parent=MS.gene027875.t1 |
| chr5.4 | CDS | 20663530 | 20664031 | 20663530 | ID=cds.MS.gene027875.t1;Parent=MS.gene027875.t1 |
| Gene Sequence |
| Protein sequence |
