Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33379.t1 | XP_003604475.1 | 97.7 | 304 | 7 | 0 | 1 | 304 | 1 | 304 | 2.30E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33379.t1 | Q9CA93 | 71.4 | 294 | 75 | 4 | 1 | 294 | 1 | 285 | 5.0e-117 | 422.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33379.t1 | G7JJD6 | 97.7 | 304 | 7 | 0 | 1 | 304 | 1 | 304 | 1.6e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050508 | MS.gene33379 | 0.813139 | 2.98E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene33379 | 0.844283 | 8.32E-59 | -1.69E-46 |
| MS.gene059710 | MS.gene33379 | 0.819357 | 1.21E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33379 | MS.gene048432 | PPI |
| MS.gene33379 | MS.gene008988 | PPI |
| MS.gene33379 | MS.gene65990 | PPI |
| MS.gene33379 | MS.gene069192 | PPI |
| MS.gene33379 | MS.gene027875 | PPI |
| MS.gene33379 | MS.gene036285 | PPI |
| MS.gene33379 | MS.gene47475 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33379.t1 | MTR_4g012850 | 97.697 | 304 | 7 | 0 | 1 | 304 | 1 | 304 | 0.0 | 614 |
| MS.gene33379.t1 | MTR_2g102010 | 60.738 | 298 | 113 | 3 | 1 | 295 | 1 | 297 | 3.52e-124 | 357 |
| MS.gene33379.t1 | MTR_8g066975 | 36.735 | 294 | 160 | 7 | 14 | 288 | 6 | 292 | 2.88e-47 | 160 |
| MS.gene33379.t1 | MTR_5g030530 | 33.333 | 294 | 170 | 8 | 14 | 288 | 6 | 292 | 9.43e-42 | 146 |
| MS.gene33379.t1 | MTR_5g030530 | 29.703 | 202 | 118 | 9 | 107 | 292 | 6 | 199 | 4.51e-11 | 62.8 |
| MS.gene33379.t1 | MTR_4g088545 | 26.756 | 299 | 203 | 5 | 8 | 292 | 4 | 300 | 1.06e-30 | 117 |
| MS.gene33379.t1 | MTR_8g096050 | 27.798 | 277 | 191 | 5 | 14 | 286 | 225 | 496 | 7.52e-27 | 110 |
| MS.gene33379.t1 | MTR_8g096050 | 29.082 | 196 | 117 | 8 | 11 | 194 | 317 | 502 | 4.68e-12 | 66.6 |
| MS.gene33379.t1 | MTR_7g084400 | 26.950 | 282 | 184 | 5 | 14 | 286 | 211 | 479 | 3.77e-26 | 107 |
| MS.gene33379.t1 | MTR_3g098460 | 25.436 | 287 | 205 | 4 | 5 | 286 | 192 | 474 | 2.75e-25 | 105 |
| MS.gene33379.t1 | MTR_1g097890 | 29.643 | 280 | 166 | 8 | 17 | 292 | 52 | 304 | 8.33e-25 | 102 |
| MS.gene33379.t1 | MTR_4g057850 | 32.824 | 262 | 159 | 9 | 17 | 267 | 23 | 278 | 2.43e-24 | 100 |
| MS.gene33379.t1 | MTR_4g057850 | 29.756 | 205 | 107 | 8 | 97 | 284 | 10 | 194 | 1.64e-11 | 64.3 |
| MS.gene33379.t1 | MTR_4g088545 | 27.459 | 244 | 162 | 4 | 8 | 237 | 4 | 246 | 2.96e-24 | 99.4 |
| MS.gene33379.t1 | MTR_4g088545 | 26.506 | 166 | 116 | 2 | 126 | 286 | 28 | 192 | 9.68e-15 | 73.2 |
| MS.gene33379.t1 | MTR_8g092080 | 30.714 | 280 | 156 | 11 | 22 | 292 | 55 | 305 | 3.44e-24 | 100 |
| MS.gene33379.t1 | MTR_8g027975 | 31.731 | 208 | 127 | 6 | 101 | 296 | 37 | 241 | 9.50e-23 | 97.1 |
| MS.gene33379.t1 | MTR_8g027975 | 23.659 | 317 | 210 | 8 | 5 | 292 | 40 | 353 | 2.79e-17 | 81.6 |
| MS.gene33379.t1 | MTR_3g104600 | 28.053 | 303 | 188 | 8 | 14 | 292 | 33 | 329 | 1.31e-22 | 96.3 |
| MS.gene33379.t1 | MTR_8g098240 | 31.273 | 275 | 168 | 8 | 18 | 286 | 322 | 581 | 4.34e-22 | 96.7 |
| MS.gene33379.t1 | MTR_8g098240 | 27.168 | 173 | 119 | 5 | 22 | 191 | 416 | 584 | 3.36e-11 | 64.3 |
| MS.gene33379.t1 | MTR_6g034515 | 26.950 | 282 | 183 | 7 | 31 | 302 | 82 | 350 | 5.98e-22 | 94.7 |
| MS.gene33379.t1 | MTR_5g009500 | 31.683 | 202 | 123 | 6 | 97 | 286 | 20 | 218 | 7.61e-22 | 94.4 |
| MS.gene33379.t1 | MTR_5g009500 | 25.081 | 307 | 198 | 9 | 14 | 292 | 36 | 338 | 3.37e-17 | 81.3 |
| MS.gene33379.t1 | MTR_7g109135 | 28.231 | 294 | 182 | 10 | 22 | 295 | 25 | 309 | 8.27e-22 | 94.0 |
| MS.gene33379.t1 | MTR_7g109135 | 31.250 | 192 | 125 | 5 | 110 | 297 | 22 | 210 | 1.86e-15 | 75.9 |
| MS.gene33379.t1 | MTR_4g088545 | 26.904 | 197 | 134 | 3 | 8 | 195 | 4 | 199 | 1.08e-21 | 92.0 |
| MS.gene33379.t1 | MTR_4g088545 | 26.506 | 166 | 116 | 2 | 126 | 286 | 28 | 192 | 9.62e-15 | 72.8 |
| MS.gene33379.t1 | MTR_1g090330 | 30.682 | 176 | 114 | 2 | 126 | 296 | 30 | 202 | 1.74e-19 | 87.0 |
| MS.gene33379.t1 | MTR_1g090330 | 26.070 | 257 | 169 | 7 | 31 | 273 | 29 | 278 | 4.46e-19 | 85.9 |
| MS.gene33379.t1 | MTR_8g086070 | 26.054 | 261 | 176 | 6 | 4 | 259 | 15 | 263 | 5.05e-19 | 85.9 |
| MS.gene33379.t1 | MTR_4g114320 | 23.711 | 291 | 213 | 4 | 8 | 296 | 115 | 398 | 1.26e-18 | 85.9 |
| MS.gene33379.t1 | MTR_3g107510 | 26.471 | 204 | 137 | 4 | 104 | 304 | 117 | 310 | 2.51e-18 | 84.7 |
| MS.gene33379.t1 | MTR_3g107510 | 22.414 | 290 | 218 | 4 | 8 | 296 | 114 | 397 | 1.30e-17 | 82.8 |
| MS.gene33379.t1 | MTR_1g012030 | 25.000 | 288 | 205 | 6 | 8 | 292 | 131 | 410 | 2.70e-18 | 85.1 |
| MS.gene33379.t1 | MTR_1g012030 | 27.861 | 201 | 132 | 5 | 104 | 304 | 134 | 321 | 3.25e-17 | 81.6 |
| MS.gene33379.t1 | MTR_7g109135 | 26.871 | 294 | 179 | 10 | 22 | 295 | 25 | 302 | 1.45e-17 | 81.6 |
| MS.gene33379.t1 | MTR_1g087840 | 27.599 | 279 | 174 | 9 | 32 | 292 | 35 | 303 | 3.42e-17 | 80.9 |
| MS.gene33379.t1 | MTR_1g087840 | 31.892 | 185 | 118 | 4 | 123 | 302 | 32 | 213 | 6.91e-15 | 74.3 |
| MS.gene33379.t1 | MTR_6g091800 | 29.798 | 198 | 117 | 6 | 104 | 286 | 13 | 203 | 6.68e-17 | 79.3 |
| MS.gene33379.t1 | MTR_6g091800 | 26.786 | 280 | 159 | 10 | 1 | 256 | 9 | 266 | 4.87e-16 | 77.0 |
| MS.gene33379.t1 | MTR_6g091800 | 30.097 | 206 | 121 | 7 | 97 | 286 | 5 | 203 | 7.69e-17 | 79.0 |
| MS.gene33379.t1 | MTR_6g091800 | 26.667 | 255 | 150 | 8 | 1 | 235 | 9 | 246 | 6.64e-14 | 70.9 |
| MS.gene33379.t1 | MTR_6g015860 | 24.172 | 302 | 201 | 11 | 25 | 303 | 21 | 317 | 8.26e-17 | 79.7 |
| MS.gene33379.t1 | MTR_6g091800 | 29.798 | 198 | 117 | 6 | 104 | 286 | 13 | 203 | 1.26e-16 | 79.3 |
| MS.gene33379.t1 | MTR_6g091800 | 25.078 | 319 | 191 | 10 | 1 | 292 | 9 | 306 | 1.63e-16 | 79.0 |
| MS.gene33379.t1 | MTR_5g055410 | 25.267 | 281 | 178 | 7 | 32 | 292 | 37 | 305 | 1.38e-16 | 79.3 |
| MS.gene33379.t1 | MTR_5g055410 | 32.065 | 184 | 116 | 5 | 123 | 302 | 34 | 212 | 1.81e-15 | 76.3 |
| MS.gene33379.t1 | MTR_5g081910 | 26.821 | 302 | 164 | 12 | 31 | 286 | 23 | 313 | 1.45e-16 | 79.3 |
| MS.gene33379.t1 | MTR_7g064980 | 30.978 | 184 | 121 | 4 | 15 | 194 | 133 | 314 | 2.38e-16 | 78.6 |
| MS.gene33379.t1 | MTR_7g064980 | 32.192 | 146 | 94 | 2 | 145 | 286 | 65 | 209 | 9.29e-16 | 76.6 |
| MS.gene33379.t1 | MTR_7g109135 | 27.500 | 240 | 156 | 7 | 65 | 295 | 1 | 231 | 2.65e-16 | 77.0 |
| MS.gene33379.t1 | MTR_6g091800 | 30.481 | 187 | 107 | 7 | 97 | 267 | 5 | 184 | 3.44e-16 | 75.5 |
| MS.gene33379.t1 | MTR_5g073040 | 28.889 | 225 | 143 | 5 | 71 | 292 | 2 | 212 | 7.33e-16 | 77.0 |
| MS.gene33379.t1 | MTR_5g073040 | 27.413 | 259 | 169 | 6 | 17 | 266 | 40 | 288 | 1.47e-13 | 70.5 |
| MS.gene33379.t1 | MTR_8g019480 | 24.092 | 303 | 195 | 6 | 31 | 298 | 48 | 350 | 9.42e-16 | 77.0 |
| MS.gene33379.t1 | MTR_7g084400 | 25.561 | 223 | 147 | 5 | 14 | 227 | 205 | 417 | 4.94e-15 | 75.5 |
| MS.gene33379.t1 | MTR_7g084400 | 28.061 | 196 | 126 | 6 | 96 | 286 | 194 | 379 | 5.64e-15 | 75.1 |
| MS.gene33379.t1 | MTR_3g100570 | 23.151 | 311 | 195 | 9 | 22 | 295 | 9 | 312 | 5.08e-15 | 74.7 |
| MS.gene33379.t1 | MTR_7g109135 | 28.261 | 184 | 115 | 6 | 121 | 295 | 35 | 210 | 7.95e-15 | 72.4 |
| MS.gene33379.t1 | MTR_4g018750 | 24.161 | 298 | 198 | 8 | 11 | 291 | 10 | 296 | 2.35e-14 | 72.4 |
| MS.gene33379.t1 | MTR_8g076760 | 35.196 | 179 | 84 | 9 | 124 | 286 | 28 | 190 | 2.72e-14 | 72.4 |
| MS.gene33379.t1 | MTR_8g076760 | 25.532 | 282 | 185 | 9 | 31 | 292 | 29 | 305 | 2.17e-12 | 67.0 |
| MS.gene33379.t1 | MTR_6g034145 | 31.757 | 148 | 82 | 4 | 154 | 286 | 6 | 149 | 6.01e-14 | 70.9 |
| MS.gene33379.t1 | MTR_6g034145 | 23.828 | 256 | 171 | 6 | 53 | 292 | 5 | 252 | 1.18e-11 | 64.3 |
| MS.gene33379.t1 | MTR_1g088995 | 28.740 | 254 | 157 | 9 | 31 | 273 | 48 | 288 | 6.31e-14 | 71.2 |
| MS.gene33379.t1 | MTR_6g091800 | 23.324 | 343 | 191 | 11 | 1 | 292 | 9 | 330 | 6.58e-14 | 71.6 |
| MS.gene33379.t1 | MTR_5g032420 | 23.175 | 315 | 194 | 8 | 22 | 292 | 9 | 319 | 7.15e-14 | 71.2 |
| MS.gene33379.t1 | MTR_3g025800 | 27.010 | 311 | 193 | 8 | 14 | 294 | 26 | 332 | 8.22e-14 | 71.2 |
| MS.gene33379.t1 | MTR_7g015870 | 22.742 | 299 | 202 | 10 | 18 | 296 | 29 | 318 | 1.22e-13 | 70.5 |
| MS.gene33379.t1 | MTR_7g015870 | 23.616 | 271 | 178 | 10 | 18 | 268 | 25 | 286 | 1.26e-13 | 70.9 |
| MS.gene33379.t1 | MTR_2g098070 | 29.927 | 137 | 92 | 2 | 150 | 286 | 214 | 346 | 1.83e-13 | 70.5 |
| MS.gene33379.t1 | MTR_4g005330 | 22.667 | 300 | 205 | 5 | 6 | 286 | 56 | 347 | 2.04e-13 | 70.5 |
| MS.gene33379.t1 | MTR_8g068890 | 22.654 | 309 | 196 | 7 | 22 | 292 | 9 | 312 | 2.04e-13 | 70.1 |
| MS.gene33379.t1 | MTR_8g068890 | 26.829 | 205 | 117 | 5 | 113 | 286 | 5 | 207 | 3.61e-11 | 63.2 |
| MS.gene33379.t1 | MTR_4g018750 | 27.647 | 170 | 113 | 4 | 126 | 286 | 31 | 199 | 3.00e-13 | 69.3 |
| MS.gene33379.t1 | MTR_4g018750 | 24.906 | 265 | 171 | 8 | 11 | 258 | 10 | 263 | 6.37e-13 | 68.2 |
| MS.gene33379.t1 | MTR_7g066690 | 22.945 | 292 | 201 | 7 | 16 | 292 | 17 | 299 | 4.93e-13 | 68.6 |
| MS.gene33379.t1 | MTR_2g436930 | 23.636 | 330 | 198 | 9 | 4 | 292 | 8 | 324 | 7.32e-13 | 68.6 |
| MS.gene33379.t1 | MTR_8g107270 | 24.797 | 246 | 165 | 6 | 51 | 286 | 63 | 298 | 2.12e-12 | 67.0 |
| MS.gene33379.t1 | MTR_3g462140 | 29.825 | 171 | 109 | 4 | 126 | 286 | 31 | 200 | 2.42e-12 | 66.6 |
| MS.gene33379.t1 | MTR_5g081150 | 32.258 | 186 | 116 | 5 | 15 | 194 | 140 | 321 | 3.31e-12 | 66.6 |
| MS.gene33379.t1 | MTR_5g081150 | 27.811 | 169 | 110 | 4 | 101 | 258 | 21 | 188 | 3.35e-11 | 63.5 |
| MS.gene33379.t1 | MTR_8g036880 | 29.927 | 137 | 92 | 2 | 150 | 286 | 251 | 383 | 8.03e-12 | 65.9 |
| MS.gene33379.t1 | MTR_4g119770 | 23.197 | 319 | 187 | 9 | 24 | 292 | 15 | 325 | 1.13e-11 | 65.1 |
| MS.gene33379.t1 | MTR_3g028590 | 27.673 | 159 | 106 | 3 | 133 | 286 | 223 | 377 | 1.16e-11 | 65.1 |
| MS.gene33379.t1 | MTR_3g028590 | 27.673 | 159 | 106 | 3 | 133 | 286 | 219 | 373 | 1.24e-11 | 65.1 |
| MS.gene33379.t1 | MTR_4g119770 | 24.873 | 197 | 128 | 4 | 112 | 291 | 16 | 209 | 1.26e-11 | 63.9 |
| MS.gene33379.t1 | MTR_5g081150 | 27.811 | 169 | 110 | 4 | 101 | 258 | 21 | 188 | 1.45e-11 | 63.9 |
| MS.gene33379.t1 | MTR_1g095780 | 26.299 | 308 | 182 | 13 | 6 | 299 | 515 | 791 | 2.45e-11 | 64.7 |
| MS.gene33379.t1 | MTR_5g081150 | 27.811 | 169 | 110 | 4 | 101 | 258 | 21 | 188 | 2.58e-11 | 63.2 |
| MS.gene33379.t1 | MTR_2g436930 | 25.974 | 154 | 97 | 3 | 156 | 292 | 81 | 234 | 4.59e-11 | 62.0 |
| MS.gene33379.t1 | MTR_8g086070 | 25.654 | 191 | 131 | 4 | 4 | 192 | 15 | 196 | 5.34e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33379.t1 | AT1G79900 | 69.831 | 295 | 80 | 2 | 1 | 295 | 1 | 286 | 7.03e-141 | 399 |
| MS.gene33379.t1 | AT5G46800 | 34.237 | 295 | 169 | 7 | 14 | 288 | 6 | 295 | 3.83e-43 | 150 |
| MS.gene33379.t1 | AT5G46800 | 28.365 | 208 | 130 | 7 | 105 | 297 | 4 | 207 | 6.51e-11 | 62.4 |
| MS.gene33379.t1 | AT5G46800 | 34.237 | 295 | 169 | 7 | 14 | 288 | 6 | 295 | 3.83e-43 | 150 |
| MS.gene33379.t1 | AT5G46800 | 28.365 | 208 | 130 | 7 | 105 | 297 | 4 | 207 | 6.51e-11 | 62.4 |
| MS.gene33379.t1 | AT5G46800 | 34.237 | 295 | 169 | 7 | 14 | 288 | 6 | 295 | 3.83e-43 | 150 |
| MS.gene33379.t1 | AT5G46800 | 28.365 | 208 | 130 | 7 | 105 | 297 | 4 | 207 | 6.51e-11 | 62.4 |
| MS.gene33379.t1 | AT2G33820 | 26.621 | 293 | 199 | 5 | 14 | 292 | 16 | 306 | 3.72e-35 | 129 |
| MS.gene33379.t1 | AT2G33820 | 26.246 | 301 | 198 | 7 | 14 | 292 | 16 | 314 | 7.56e-33 | 123 |
| MS.gene33379.t1 | AT1G34065 | 29.329 | 283 | 169 | 7 | 14 | 292 | 73 | 328 | 2.31e-26 | 106 |
| MS.gene33379.t1 | AT1G34065 | 28.421 | 285 | 169 | 7 | 14 | 292 | 80 | 335 | 2.73e-26 | 106 |
| MS.gene33379.t1 | AT4G11440 | 32.384 | 281 | 171 | 9 | 14 | 286 | 328 | 597 | 2.89e-25 | 106 |
| MS.gene33379.t1 | AT4G11440 | 32.384 | 281 | 171 | 9 | 14 | 286 | 328 | 597 | 2.89e-25 | 106 |
| MS.gene33379.t1 | AT2G33820 | 26.222 | 225 | 156 | 4 | 76 | 292 | 3 | 225 | 5.72e-25 | 100 |
| MS.gene33379.t1 | AT4G39460 | 30.034 | 293 | 172 | 10 | 16 | 303 | 58 | 322 | 7.76e-25 | 102 |
| MS.gene33379.t1 | AT4G39460 | 30.034 | 293 | 172 | 10 | 16 | 303 | 58 | 322 | 7.76e-25 | 102 |
| MS.gene33379.t1 | AT4G39460 | 30.034 | 293 | 172 | 10 | 16 | 303 | 58 | 322 | 7.76e-25 | 102 |
| MS.gene33379.t1 | AT5G19760 | 26.667 | 300 | 192 | 7 | 14 | 304 | 16 | 296 | 1.70e-24 | 100 |
| MS.gene33379.t1 | AT5G01340 | 30.640 | 297 | 179 | 11 | 17 | 294 | 18 | 306 | 2.21e-23 | 97.8 |
| MS.gene33379.t1 | AT5G01340 | 29.767 | 215 | 120 | 7 | 97 | 297 | 5 | 202 | 2.18e-12 | 67.0 |
| MS.gene33379.t1 | AT4G01100 | 32.889 | 225 | 132 | 8 | 88 | 297 | 12 | 232 | 4.45e-23 | 97.8 |
| MS.gene33379.t1 | AT4G01100 | 23.585 | 318 | 209 | 8 | 5 | 292 | 31 | 344 | 1.46e-18 | 85.1 |
| MS.gene33379.t1 | AT2G33820 | 25.214 | 234 | 158 | 5 | 14 | 231 | 16 | 248 | 1.02e-22 | 95.5 |
| MS.gene33379.t1 | AT4G01100 | 30.962 | 239 | 132 | 8 | 88 | 297 | 12 | 246 | 1.80e-22 | 96.3 |
| MS.gene33379.t1 | AT4G01100 | 22.630 | 327 | 205 | 8 | 5 | 287 | 31 | 353 | 5.46e-18 | 83.6 |
| MS.gene33379.t1 | AT1G25380 | 28.058 | 278 | 175 | 7 | 32 | 292 | 37 | 306 | 2.23e-22 | 96.3 |
| MS.gene33379.t1 | AT1G25380 | 28.058 | 278 | 175 | 7 | 32 | 292 | 37 | 306 | 2.23e-22 | 96.3 |
| MS.gene33379.t1 | AT4G01100 | 34.444 | 180 | 109 | 5 | 124 | 297 | 6 | 182 | 4.31e-21 | 91.7 |
| MS.gene33379.t1 | AT4G01100 | 24.521 | 261 | 167 | 7 | 53 | 287 | 33 | 289 | 7.66e-17 | 79.7 |
| MS.gene33379.t1 | AT3G20240 | 25.246 | 305 | 191 | 5 | 6 | 286 | 42 | 333 | 6.94e-21 | 91.7 |
| MS.gene33379.t1 | AT5G42130 | 27.719 | 285 | 176 | 10 | 32 | 302 | 134 | 402 | 8.51e-21 | 92.0 |
| MS.gene33379.t1 | AT2G47490 | 29.577 | 284 | 167 | 11 | 32 | 295 | 33 | 303 | 1.49e-20 | 90.1 |
| MS.gene33379.t1 | AT5G51050 | 25.175 | 286 | 204 | 6 | 5 | 286 | 210 | 489 | 6.37e-20 | 90.1 |
| MS.gene33379.t1 | AT1G14140 | 25.098 | 255 | 175 | 6 | 31 | 273 | 31 | 281 | 8.71e-20 | 88.2 |
| MS.gene33379.t1 | AT1G14140 | 28.302 | 212 | 140 | 6 | 94 | 296 | 1 | 209 | 2.87e-16 | 78.2 |
| MS.gene33379.t1 | AT4G32400 | 23.448 | 290 | 215 | 4 | 8 | 296 | 106 | 389 | 9.24e-20 | 89.0 |
| MS.gene33379.t1 | AT1G74240 | 28.479 | 309 | 187 | 8 | 14 | 295 | 34 | 335 | 3.04e-19 | 87.4 |
| MS.gene33379.t1 | AT5G61810 | 26.199 | 271 | 177 | 8 | 5 | 267 | 52 | 307 | 1.24e-18 | 85.1 |
| MS.gene33379.t1 | AT5G61810 | 28.796 | 191 | 119 | 7 | 11 | 194 | 152 | 332 | 3.03e-11 | 63.5 |
| MS.gene33379.t1 | AT5G61810 | 26.199 | 271 | 177 | 8 | 5 | 267 | 195 | 450 | 4.20e-18 | 84.7 |
| MS.gene33379.t1 | AT5G61810 | 28.796 | 191 | 119 | 7 | 11 | 194 | 295 | 475 | 3.23e-11 | 64.3 |
| MS.gene33379.t1 | AT4G03115 | 28.395 | 243 | 155 | 8 | 31 | 266 | 53 | 283 | 5.27e-18 | 83.2 |
| MS.gene33379.t1 | AT4G03115 | 27.000 | 200 | 133 | 6 | 103 | 299 | 29 | 218 | 3.58e-12 | 66.2 |
| MS.gene33379.t1 | AT4G03115 | 28.395 | 243 | 155 | 8 | 31 | 266 | 85 | 315 | 8.34e-18 | 82.8 |
| MS.gene33379.t1 | AT4G03115 | 27.000 | 200 | 133 | 6 | 103 | 299 | 61 | 250 | 5.62e-12 | 65.9 |
| MS.gene33379.t1 | AT4G26180 | 24.830 | 294 | 195 | 8 | 13 | 287 | 18 | 304 | 9.24e-18 | 82.8 |
| MS.gene33379.t1 | AT4G26180 | 29.744 | 195 | 121 | 4 | 104 | 286 | 15 | 205 | 6.94e-16 | 77.4 |
| MS.gene33379.t1 | AT4G26180 | 25.641 | 273 | 177 | 8 | 14 | 267 | 19 | 284 | 1.23e-17 | 81.6 |
| MS.gene33379.t1 | AT4G26180 | 29.744 | 195 | 121 | 4 | 104 | 286 | 15 | 205 | 3.56e-16 | 77.8 |
| MS.gene33379.t1 | AT2G37890 | 29.592 | 196 | 129 | 5 | 6 | 194 | 139 | 332 | 4.36e-17 | 80.9 |
| MS.gene33379.t1 | AT2G37890 | 25.166 | 302 | 191 | 9 | 14 | 292 | 43 | 332 | 1.59e-14 | 73.6 |
| MS.gene33379.t1 | AT2G37890 | 30.729 | 192 | 118 | 8 | 105 | 286 | 41 | 227 | 2.54e-14 | 72.8 |
| MS.gene33379.t1 | AT1G72820 | 23.810 | 315 | 205 | 7 | 16 | 297 | 31 | 343 | 1.09e-16 | 79.7 |
| MS.gene33379.t1 | AT1G72820 | 23.810 | 315 | 205 | 7 | 16 | 297 | 31 | 343 | 1.09e-16 | 79.7 |
| MS.gene33379.t1 | AT3G54110 | 25.556 | 270 | 175 | 8 | 14 | 267 | 13 | 272 | 1.73e-16 | 78.6 |
| MS.gene33379.t1 | AT3G54110 | 29.787 | 188 | 109 | 5 | 126 | 304 | 31 | 204 | 4.17e-14 | 72.0 |
| MS.gene33379.t1 | AT1G74240 | 27.740 | 292 | 177 | 8 | 31 | 295 | 3 | 287 | 2.22e-16 | 78.6 |
| MS.gene33379.t1 | AT1G14560 | 25.180 | 278 | 179 | 8 | 32 | 286 | 43 | 314 | 2.60e-16 | 78.6 |
| MS.gene33379.t1 | AT1G14560 | 27.684 | 177 | 110 | 4 | 124 | 286 | 41 | 213 | 4.23e-11 | 63.2 |
| MS.gene33379.t1 | AT1G14560 | 25.869 | 259 | 163 | 8 | 32 | 267 | 43 | 295 | 4.40e-16 | 77.8 |
| MS.gene33379.t1 | AT3G53940 | 30.108 | 186 | 120 | 5 | 15 | 194 | 179 | 360 | 4.74e-16 | 78.2 |
| MS.gene33379.t1 | AT3G53940 | 29.508 | 183 | 121 | 3 | 111 | 286 | 74 | 255 | 2.60e-14 | 73.2 |
| MS.gene33379.t1 | AT5G58970 | 24.342 | 304 | 197 | 9 | 2 | 286 | 3 | 292 | 8.42e-16 | 76.6 |
| MS.gene33379.t1 | AT4G03115 | 28.139 | 231 | 149 | 7 | 41 | 266 | 2 | 220 | 1.56e-15 | 75.1 |
| MS.gene33379.t1 | AT4G03115 | 28.111 | 217 | 142 | 6 | 52 | 266 | 8 | 212 | 2.12e-15 | 74.7 |
| MS.gene33379.t1 | AT3G55640 | 30.769 | 195 | 129 | 4 | 1 | 191 | 130 | 322 | 2.73e-15 | 75.5 |
| MS.gene33379.t1 | AT3G55640 | 27.322 | 183 | 125 | 3 | 111 | 286 | 39 | 220 | 1.81e-14 | 73.2 |
| MS.gene33379.t1 | AT3G55640 | 23.701 | 308 | 197 | 9 | 12 | 295 | 34 | 327 | 4.02e-11 | 63.2 |
| MS.gene33379.t1 | AT3G55640 | 30.769 | 195 | 129 | 4 | 1 | 191 | 130 | 322 | 2.73e-15 | 75.5 |
| MS.gene33379.t1 | AT3G55640 | 27.322 | 183 | 125 | 3 | 111 | 286 | 39 | 220 | 1.81e-14 | 73.2 |
| MS.gene33379.t1 | AT3G55640 | 23.701 | 308 | 197 | 9 | 12 | 295 | 34 | 327 | 4.02e-11 | 63.2 |
| MS.gene33379.t1 | AT5G09470 | 29.936 | 157 | 104 | 2 | 134 | 286 | 77 | 231 | 2.98e-15 | 75.5 |
| MS.gene33379.t1 | AT5G09470 | 24.891 | 229 | 163 | 5 | 48 | 273 | 91 | 313 | 1.58e-11 | 64.7 |
| MS.gene33379.t1 | AT5G66380 | 26.351 | 296 | 190 | 10 | 18 | 292 | 12 | 300 | 5.82e-15 | 74.3 |
| MS.gene33379.t1 | AT3G55640 | 27.322 | 183 | 125 | 3 | 111 | 286 | 39 | 220 | 7.34e-15 | 73.6 |
| MS.gene33379.t1 | AT3G55640 | 27.322 | 183 | 125 | 3 | 111 | 286 | 39 | 220 | 7.34e-15 | 73.6 |
| MS.gene33379.t1 | AT4G24570 | 24.367 | 316 | 193 | 8 | 14 | 292 | 4 | 310 | 8.77e-15 | 73.9 |
| MS.gene33379.t1 | AT3G53940 | 29.508 | 183 | 121 | 3 | 111 | 286 | 74 | 255 | 1.25e-14 | 73.2 |
| MS.gene33379.t1 | AT2G39970 | 24.242 | 297 | 180 | 9 | 31 | 286 | 23 | 315 | 4.31e-14 | 72.0 |
| MS.gene33379.t1 | AT5G07320 | 24.364 | 275 | 195 | 5 | 14 | 286 | 207 | 470 | 7.39e-14 | 72.0 |
| MS.gene33379.t1 | AT5G07320 | 29.167 | 168 | 109 | 4 | 125 | 292 | 224 | 381 | 2.83e-12 | 67.4 |
| MS.gene33379.t1 | AT5G07320 | 25.654 | 191 | 125 | 5 | 11 | 194 | 296 | 476 | 3.56e-12 | 67.0 |
| MS.gene33379.t1 | AT1G14560 | 26.667 | 195 | 120 | 5 | 111 | 286 | 26 | 216 | 1.36e-13 | 69.3 |
| MS.gene33379.t1 | AT1G07030 | 27.962 | 211 | 140 | 5 | 94 | 302 | 25 | 225 | 1.54e-13 | 70.5 |
| MS.gene33379.t1 | AT1G07030 | 26.148 | 283 | 175 | 9 | 2 | 266 | 24 | 290 | 3.53e-11 | 63.5 |
| MS.gene33379.t1 | AT5G13490 | 29.375 | 160 | 103 | 3 | 133 | 286 | 214 | 369 | 1.61e-13 | 70.9 |
| MS.gene33379.t1 | AT5G13490 | 29.375 | 160 | 103 | 3 | 133 | 286 | 214 | 369 | 1.61e-13 | 70.9 |
| MS.gene33379.t1 | AT5G58970 | 28.191 | 188 | 113 | 5 | 126 | 304 | 32 | 206 | 4.72e-13 | 68.6 |
| MS.gene33379.t1 | AT4G03115 | 27.000 | 200 | 133 | 6 | 103 | 299 | 29 | 218 | 1.55e-12 | 66.2 |
| MS.gene33379.t1 | AT4G03115 | 27.000 | 200 | 133 | 6 | 103 | 299 | 29 | 218 | 1.75e-12 | 66.2 |
| MS.gene33379.t1 | AT5G15640 | 22.939 | 279 | 183 | 9 | 14 | 268 | 18 | 288 | 2.04e-12 | 67.0 |
| MS.gene33379.t1 | AT5G15640 | 22.939 | 279 | 183 | 9 | 14 | 268 | 25 | 295 | 2.58e-12 | 67.0 |
| MS.gene33379.t1 | AT2G46320 | 29.861 | 144 | 93 | 3 | 155 | 290 | 109 | 252 | 5.32e-12 | 66.2 |
| MS.gene33379.t1 | AT2G30160 | 27.473 | 182 | 123 | 3 | 111 | 292 | 43 | 215 | 5.77e-12 | 65.9 |
| MS.gene33379.t1 | AT2G46320 | 28.767 | 146 | 96 | 3 | 153 | 290 | 8 | 153 | 8.47e-12 | 64.3 |
| MS.gene33379.t1 | AT2G46320 | 28.767 | 146 | 96 | 3 | 153 | 290 | 8 | 153 | 1.12e-11 | 64.3 |
| MS.gene33379.t1 | AT2G46320 | 28.767 | 146 | 96 | 3 | 153 | 290 | 8 | 153 | 1.12e-11 | 64.3 |
| MS.gene33379.t1 | AT2G46320 | 28.767 | 146 | 96 | 3 | 153 | 290 | 8 | 153 | 1.12e-11 | 64.3 |
| MS.gene33379.t1 | AT3G51870 | 23.792 | 269 | 184 | 7 | 36 | 302 | 120 | 369 | 2.35e-11 | 64.3 |
| MS.gene33379.t1 | AT2G22500 | 22.727 | 308 | 198 | 8 | 22 | 295 | 9 | 310 | 2.39e-11 | 63.9 |
| MS.gene33379.t1 | AT5G48970 | 24.762 | 210 | 140 | 4 | 110 | 304 | 22 | 228 | 3.36e-11 | 63.5 |
| MS.gene33379.t1 | AT5G48970 | 24.062 | 320 | 186 | 9 | 23 | 292 | 22 | 334 | 9.31e-11 | 62.4 |
Find 69 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAAAAGCAGAACCATTT+TGG | 0.220455 | 4.2:+87881185 | None:intergenic |
| GGCACTGCTGGTATAATTTC+TGG | 0.229075 | 4.2:-87881250 | MS.gene33379:CDS |
| GTAAGGATAGAATGGATTTC+TGG | 0.274280 | 4.2:-87881327 | None:intergenic |
| GAATTTGTGGCTGGTGGATT+TGG | 0.305163 | 4.2:-87881274 | MS.gene33379:CDS |
| CTTTAGACAACATTTGTCTA+AGG | 0.317894 | 4.2:+87881161 | None:intergenic |
| TATAATTTCTGGTTATCCTT+TGG | 0.324296 | 4.2:-87881239 | MS.gene33379:CDS |
| CAACAAAGTGGTGGCCAAAA+TGG | 0.330381 | 4.2:-87881199 | MS.gene33379:CDS |
| GAGTTTCTTGCAAGTAGTTC+AGG | 0.334182 | 4.2:-87881301 | MS.gene33379:CDS |
| CCTGTGTTGTGGCGCGGTTT+AGG | 0.358076 | 4.2:-87879310 | MS.gene33379:CDS |
| CTCGTCTTCACAACATCAAA+AGG | 0.383330 | 4.2:+87879415 | None:intergenic |
| TTGTTCTTTGTACCGTGGTA+TGG | 0.393231 | 4.2:-87881131 | MS.gene33379:CDS |
| GCCTAATGCAACACTCTTGT+AGG | 0.397929 | 4.2:+87879777 | None:intergenic |
| GGTGGATTTGGAGGCACTGC+TGG | 0.406098 | 4.2:-87881262 | MS.gene33379:CDS |
| GCCAGAGCATTTGTTGTGAA+TGG | 0.409963 | 4.2:-87879277 | MS.gene33379:CDS |
| AGACAAATGTTGTCTAAAGA+AGG | 0.414361 | 4.2:-87881157 | MS.gene33379:CDS |
| TTGGTGTCTGGAGGATTAGC+GGG | 0.424572 | 4.2:-87879463 | MS.gene33379:CDS |
| TAAAAGTAGCTAAACACATA+TGG | 0.435448 | 4.2:-87879642 | MS.gene33379:CDS |
| CGCGGCATATATCGAGGACT+TGG | 0.435598 | 4.2:-87879604 | MS.gene33379:CDS |
| TTGAATACTATGTTGGTGTC+TGG | 0.453435 | 4.2:-87879475 | MS.gene33379:CDS |
| TAGTTCAGGTAGAGAATTTG+TGG | 0.458521 | 4.2:-87881287 | MS.gene33379:CDS |
| GAGTGTTGCATTAGGCGGAA+TGG | 0.463700 | 4.2:-87879770 | MS.gene33379:CDS |
| AGTGTTGCATTAGGCGGAAT+GGG | 0.466863 | 4.2:-87879769 | MS.gene33379:CDS |
| ACGAAGAGTGTCAGAGAAGA+AGG | 0.477304 | 4.2:-87879337 | MS.gene33379:CDS |
| CAATGAAAACGTTCAAATGC+AGG | 0.490208 | 4.2:-87879209 | MS.gene33379:CDS |
| TGTTCTTTGTACCGTGGTAT+GGG | 0.490836 | 4.2:-87881130 | MS.gene33379:CDS |
| CCGTGGTATGGGTGCACCAT+TGG | 0.501937 | 4.2:-87881119 | MS.gene33379:CDS |
| GGTAGAGAATTTGTGGCTGG+TGG | 0.502758 | 4.2:-87881280 | MS.gene33379:CDS |
| AGAAAGTTTGAATACTATGT+TGG | 0.504957 | 4.2:-87879482 | MS.gene33379:CDS |
| GTTGGTGTCTGGAGGATTAG+CGG | 0.505819 | 4.2:-87879464 | MS.gene33379:CDS |
| AAACATATGCAGTTCTCTCA+AGG | 0.505854 | 4.2:-87879837 | MS.gene33379:CDS |
| TCCTACAAGAGTGTTGCATT+AGG | 0.508226 | 4.2:-87879778 | MS.gene33379:CDS |
| ACAAACCAGTCAAAAGAATC+CGG | 0.509431 | 4.2:-87879676 | MS.gene33379:CDS |
| AAGTTTATTGCTTTCACCAG+TGG | 0.509839 | 4.2:-87879731 | MS.gene33379:CDS |
| ACCATTCACAACAAATGCTC+TGG | 0.512219 | 4.2:+87879276 | None:intergenic |
| CCTAAACCGCGCCACAACAC+AGG | 0.527341 | 4.2:+87879310 | None:intergenic |
| GAACTACTTGCAAGAAACTC+TGG | 0.529528 | 4.2:+87881304 | None:intergenic |
| TAAACACATATGGAGAAAAG+AGG | 0.540728 | 4.2:-87879632 | MS.gene33379:CDS |
| TTTGTGGCTGGTGGATTTGG+AGG | 0.542646 | 4.2:-87881271 | MS.gene33379:CDS |
| GCATTAGGCGGAATGGGCAC+AGG | 0.549467 | 4.2:-87879763 | MS.gene33379:CDS |
| TCAGGTAGAGAATTTGTGGC+TGG | 0.550186 | 4.2:-87881283 | MS.gene33379:CDS |
| ATGAGGGATATACCTTCTCA+TGG | 0.567380 | 4.2:-87879571 | MS.gene33379:CDS |
| GGATCTTTAGCAGAATCAGA+TGG | 0.579538 | 4.2:+87879805 | None:intergenic |
| GACTTGGCATCACTATAATG+AGG | 0.581438 | 4.2:-87879588 | MS.gene33379:CDS |
| CTAAACCGCGCCACAACACA+GGG | 0.586443 | 4.2:+87879311 | None:intergenic |
| AACATATGCAGTTCTCTCAA+GGG | 0.587290 | 4.2:-87879836 | MS.gene33379:CDS |
| TCGTCTTCACAACATCAAAA+GGG | 0.593439 | 4.2:+87879416 | None:intergenic |
| AATGCAACACTCTTGTAGGA+TGG | 0.595216 | 4.2:+87879781 | None:intergenic |
| TACAAGAGTGTTGCATTAGG+CGG | 0.595968 | 4.2:-87879775 | MS.gene33379:CDS |
| CCTTCTGCTATAAAATACAA+AGG | 0.598476 | 4.2:-87879376 | MS.gene33379:CDS |
| AAACACATATGGAGAAAAGA+GGG | 0.601908 | 4.2:-87879631 | MS.gene33379:CDS |
| GGATACCCTGTGTTGTGGCG+CGG | 0.610153 | 4.2:-87879316 | MS.gene33379:CDS |
| TGGTGTCTGGAGGATTAGCG+GGG | 0.610871 | 4.2:-87879462 | MS.gene33379:CDS |
| AATACTATGTTGGTGTCTGG+AGG | 0.616080 | 4.2:-87879472 | MS.gene33379:CDS |
| AAGAAGGATACCCTGTGTTG+TGG | 0.621789 | 4.2:-87879321 | MS.gene33379:CDS |
| TCTGGACATATGAATACATG+AGG | 0.629048 | 4.2:-87879540 | MS.gene33379:CDS |
| GCAACACTCTTGTAGGATGG+AGG | 0.631532 | 4.2:+87879784 | None:intergenic |
| TTAGGCGGAATGGGCACAGG+AGG | 0.638617 | 4.2:-87879760 | MS.gene33379:CDS |
| ACTTGGCATCACTATAATGA+GGG | 0.646915 | 4.2:-87879587 | MS.gene33379:CDS |
| CCAATGGTGCACCCATACCA+CGG | 0.656699 | 4.2:+87881119 | None:intergenic |
| CTTAGAATCAGACAACAAAG+TGG | 0.668062 | 4.2:-87881211 | MS.gene33379:CDS |
| TGGAGAAAAGAGGGTTTGCG+CGG | 0.668379 | 4.2:-87879622 | MS.gene33379:CDS |
| AGAATCAGACAACAAAGTGG+TGG | 0.674748 | 4.2:-87881208 | MS.gene33379:CDS |
| CTGATTCTAAGAGTATCCAA+AGG | 0.682126 | 4.2:+87881223 | None:intergenic |
| GGTTTGCGCGGCATATATCG+AGG | 0.692095 | 4.2:-87879610 | MS.gene33379:CDS |
| CTGGACATATGAATACATGA+GGG | 0.692763 | 4.2:-87879539 | MS.gene33379:CDS |
| TGAAAAGTAACTGATGCCAA+TGG | 0.710784 | 4.2:+87881103 | None:intergenic |
| GTGGCGCGGTTTAGGAACTG+CGG | 0.716540 | 4.2:-87879302 | MS.gene33379:CDS |
| GGTGTCTGGAGGATTAGCGG+GGG | 0.720060 | 4.2:-87879461 | MS.gene33379:CDS |
| CTGCTTATGAGATTACACTG+AGG | 0.757246 | 4.2:-87879243 | MS.gene33379:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAATGATTGACAA+TGG | + | chr4.2:87880622-87880641 | None:intergenic | 15.0% |
| !! | TAATTATAAATATTCTTTGC+TGG | + | chr4.2:87880264-87880283 | None:intergenic | 15.0% |
| !! | ACGAAAATTGTCTAAAAATT+TGG | - | chr4.2:87880544-87880563 | MS.gene33379:intron | 20.0% |
| !! | ATATTTAATATTGCTTGAGT+TGG | + | chr4.2:87880057-87880076 | None:intergenic | 20.0% |
| !! | ATATTTGTGTAAACTCATAT+TGG | - | chr4.2:87879954-87879973 | MS.gene33379:intron | 20.0% |
| !! | ATGCTATGATTTATTGTTTA+TGG | - | chr4.2:87879513-87879532 | MS.gene33379:CDS | 20.0% |
| !! | ATTAGGATTAGATTAAGATT+AGG | - | chr4.2:87880006-87880025 | MS.gene33379:intron | 20.0% |
| !! | ATTTGTTTAGATAAAGGATT+AGG | - | chr4.2:87879989-87880008 | MS.gene33379:intron | 20.0% |
| !!! | AAATTTTTAGACAATTTTCG+TGG | + | chr4.2:87880545-87880564 | None:intergenic | 20.0% |
| !!! | ATTATTTTTTTGTTTTTCGG+TGG | - | chr4.2:87880635-87880654 | MS.gene33379:intron | 20.0% |
| !!! | CTTTTGATTTGTTTAGATAA+AGG | - | chr4.2:87879983-87880002 | MS.gene33379:intron | 20.0% |
| ! | AGAAAGTTTGAATACTATGT+TGG | - | chr4.2:87881032-87881051 | MS.gene33379:intron | 25.0% |
| ! | ATGAGAAGAAAAGAAAAAAG+TGG | - | chr4.2:87879814-87879833 | MS.gene33379:CDS | 25.0% |
| ! | TAAAAGTAGCTAAACACATA+TGG | - | chr4.2:87880872-87880891 | MS.gene33379:intron | 25.0% |
| ! | TATCTACATATGAAGTTTGT+GGG | - | chr4.2:87880425-87880444 | MS.gene33379:intron | 25.0% |
| ! | TATTGCAACAATCAAAGAAA+TGG | - | chr4.2:87880487-87880506 | MS.gene33379:intron | 25.0% |
| ! | TTATCTACATATGAAGTTTG+TGG | - | chr4.2:87880424-87880443 | MS.gene33379:intron | 25.0% |
| !! | TTTTGATGCATCTAATTGAA+TGG | + | chr4.2:87880289-87880308 | None:intergenic | 25.0% |
| !!! | TATAATTTCTGGTTATCCTT+TGG | - | chr4.2:87879275-87879294 | MS.gene33379:CDS | 25.0% |
| AAAAAAGTGGCTGATATGAT+AGG | - | chr4.2:87879827-87879846 | MS.gene33379:CDS | 30.0% | |
| AAACACATATGGAGAAAAGA+GGG | - | chr4.2:87880883-87880902 | MS.gene33379:intron | 30.0% | |
| AGACAAATGTTGTCTAAAGA+AGG | - | chr4.2:87879357-87879376 | MS.gene33379:CDS | 30.0% | |
| AGTATAGGATTCATGTGAAT+AGG | - | chr4.2:87879642-87879661 | MS.gene33379:CDS | 30.0% | |
| ATCAGGCATAAATCATCAAT+TGG | - | chr4.2:87879555-87879574 | MS.gene33379:CDS | 30.0% | |
| ATCATCACAAATTGCAGTAT+AGG | - | chr4.2:87879627-87879646 | MS.gene33379:CDS | 30.0% | |
| CCTTCTGCTATAAAATACAA+AGG | - | chr4.2:87881138-87881157 | MS.gene33379:CDS | 30.0% | |
| CTTTAGACAACATTTGTCTA+AGG | + | chr4.2:87879356-87879375 | None:intergenic | 30.0% | |
| TAAACACATATGGAGAAAAG+AGG | - | chr4.2:87880882-87880901 | MS.gene33379:intron | 30.0% | |
| TCAGGCATAAATCATCAATT+GGG | - | chr4.2:87879556-87879575 | MS.gene33379:CDS | 30.0% | |
| TCTCATATAATTGATCTCTG+TGG | + | chr4.2:87880579-87880598 | None:intergenic | 30.0% | |
| ! | AACAGTGCTTTTGTATATTC+TGG | - | chr4.2:87880346-87880365 | MS.gene33379:intron | 30.0% |
| ! | ACAGTGCTTTTGTATATTCT+GGG | - | chr4.2:87880347-87880366 | MS.gene33379:intron | 30.0% |
| ! | ATAGGAATCGTTTGTGATTT+TGG | - | chr4.2:87879845-87879864 | MS.gene33379:CDS | 30.0% |
| ! | CCTTTGTATTTTATAGCAGA+AGG | + | chr4.2:87881141-87881160 | None:intergenic | 30.0% |
| ! | GAACGTTTTCATTGTTAAAC+AGG | + | chr4.2:87881299-87881318 | None:intergenic | 30.0% |
| ! | TAAATATTTTCACATGAGCC+AGG | - | chr4.2:87880070-87880089 | MS.gene33379:intron | 30.0% |
| ! | TAGGAATCGTTTGTGATTTT+GGG | - | chr4.2:87879846-87879865 | MS.gene33379:CDS | 30.0% |
| ! | TGTTAAAAGCAGAACCATTT+TGG | + | chr4.2:87879332-87879351 | None:intergenic | 30.0% |
| !! | ATATTGCTTGAGTTGGAAAA+AGG | + | chr4.2:87880050-87880069 | None:intergenic | 30.0% |
| !!! | ATGTGTTTAGCTACTTTTAC+AGG | + | chr4.2:87880871-87880890 | None:intergenic | 30.0% |
| AAAACATCCTTTGCCATCTT+TGG | - | chr4.2:87879742-87879761 | MS.gene33379:CDS | 35.0% | |
| AAAACTGTACGACTGTTACA+TGG | - | chr4.2:87880149-87880168 | MS.gene33379:intron | 35.0% | |
| AAACATATGCAGTTCTCTCA+AGG | - | chr4.2:87880677-87880696 | MS.gene33379:intron | 35.0% | |
| AAACTGTACGACTGTTACAT+GGG | - | chr4.2:87880150-87880169 | MS.gene33379:intron | 35.0% | |
| AACATATGCAGTTCTCTCAA+GGG | - | chr4.2:87880678-87880697 | MS.gene33379:intron | 35.0% | |
| AAGTTTATTGCTTTCACCAG+TGG | - | chr4.2:87880783-87880802 | MS.gene33379:intron | 35.0% | |
| AATAGCCTTTGAATGCCTTA+TGG | + | chr4.2:87880471-87880490 | None:intergenic | 35.0% | |
| ACAAACCAGTCAAAAGAATC+CGG | - | chr4.2:87880838-87880857 | MS.gene33379:intron | 35.0% | |
| ACTGTATCCATACCATAGTA+GGG | + | chr4.2:87880113-87880132 | None:intergenic | 35.0% | |
| ACTTGGCATCACTATAATGA+GGG | - | chr4.2:87880927-87880946 | MS.gene33379:intron | 35.0% | |
| CAATGAAAACGTTCAAATGC+AGG | - | chr4.2:87881305-87881324 | MS.gene33379:CDS | 35.0% | |
| CACTGTTCATGTCATTGTAT+TGG | + | chr4.2:87880333-87880352 | None:intergenic | 35.0% | |
| CAGAAGTAAAAACCATGAGA+AGG | + | chr4.2:87880958-87880977 | None:intergenic | 35.0% | |
| CTGGACATATGAATACATGA+GGG | - | chr4.2:87880975-87880994 | MS.gene33379:intron | 35.0% | |
| CTTAGAATCAGACAACAAAG+TGG | - | chr4.2:87879303-87879322 | MS.gene33379:CDS | 35.0% | |
| GAACATCAAGAATCCAAAGA+TGG | + | chr4.2:87879758-87879777 | None:intergenic | 35.0% | |
| GATGTTCTTTGAATCTCTGA+TGG | - | chr4.2:87879771-87879790 | MS.gene33379:CDS | 35.0% | |
| TACTGTATCCATACCATAGT+AGG | + | chr4.2:87880114-87880133 | None:intergenic | 35.0% | |
| TAGTTCAGGTAGAGAATTTG+TGG | - | chr4.2:87879227-87879246 | MS.gene33379:CDS | 35.0% | |
| TCGTCTTCACAACATCAAAA+GGG | + | chr4.2:87881101-87881120 | None:intergenic | 35.0% | |
| TCTGGACATATGAATACATG+AGG | - | chr4.2:87880974-87880993 | MS.gene33379:intron | 35.0% | |
| TGAAAAGTAACTGATGCCAA+TGG | + | chr4.2:87879414-87879433 | None:intergenic | 35.0% | |
| ! | AGGAATCGTTTGTGATTTTG+GGG | - | chr4.2:87879847-87879866 | MS.gene33379:CDS | 35.0% |
| ! | ATGTCATTGTATTGGTAGGT+GGG | + | chr4.2:87880325-87880344 | None:intergenic | 35.0% |
| ! | CTTCTCATGGTTTTTACTTC+TGG | - | chr4.2:87880956-87880975 | MS.gene33379:intron | 35.0% |
| ! | GCTTTTGTATATTCTGGGTA+TGG | - | chr4.2:87880352-87880371 | MS.gene33379:intron | 35.0% |
| ! | GTTCATGTCATTGTATTGGT+AGG | + | chr4.2:87880329-87880348 | None:intergenic | 35.0% |
| ! | TACTTTTACAGGAGTTGTTC+CGG | + | chr4.2:87880860-87880879 | None:intergenic | 35.0% |
| ! | TATAGCCATAAGGCATTCAA+AGG | - | chr4.2:87880463-87880482 | MS.gene33379:intron | 35.0% |
| ! | TTGAATACTATGTTGGTGTC+TGG | - | chr4.2:87881039-87881058 | MS.gene33379:intron | 35.0% |
| !! | CTGATTCTAAGAGTATCCAA+AGG | + | chr4.2:87879294-87879313 | None:intergenic | 35.0% |
| !!! | ATTGGCATCAGTTACTTTTC+AGG | - | chr4.2:87879413-87879432 | MS.gene33379:CDS | 35.0% |
| AATGCAACACTCTTGTAGGA+TGG | + | chr4.2:87880736-87880755 | None:intergenic | 40.0% | |
| ACCATTCACAACAAATGCTC+TGG | + | chr4.2:87881241-87881260 | None:intergenic | 40.0% | |
| AGAATCAGACAACAAAGTGG+TGG | - | chr4.2:87879306-87879325 | MS.gene33379:CDS | 40.0% | |
| ATGAGGGAAAAATTGCATCC+AGG | - | chr4.2:87880991-87881010 | MS.gene33379:intron | 40.0% | |
| ATGAGGGATATACCTTCTCA+TGG | - | chr4.2:87880943-87880962 | MS.gene33379:intron | 40.0% | |
| CAAGAATCCAAAGATGGCAA+AGG | + | chr4.2:87879752-87879771 | None:intergenic | 40.0% | |
| CATCCAGGTTGTAGAAAAAG+TGG | - | chr4.2:87881006-87881025 | MS.gene33379:intron | 40.0% | |
| CTCGTCTTCACAACATCAAA+AGG | + | chr4.2:87881102-87881121 | None:intergenic | 40.0% | |
| CTGCTTATGAGATTACACTG+AGG | - | chr4.2:87881271-87881290 | MS.gene33379:CDS | 40.0% | |
| CTGGGTTATGTATAGCCATA+AGG | - | chr4.2:87880453-87880472 | MS.gene33379:intron | 40.0% | |
| CTGTATCCATACCATAGTAG+GGG | + | chr4.2:87880112-87880131 | None:intergenic | 40.0% | |
| GAACTACTTGCAAGAAACTC+TGG | + | chr4.2:87879213-87879232 | None:intergenic | 40.0% | |
| GAATCACATTCACATCACAC+AGG | + | chr4.2:87880176-87880195 | None:intergenic | 40.0% | |
| GACTTGGCATCACTATAATG+AGG | - | chr4.2:87880926-87880945 | MS.gene33379:intron | 40.0% | |
| GAGTTTCTTGCAAGTAGTTC+AGG | - | chr4.2:87879213-87879232 | MS.gene33379:CDS | 40.0% | |
| GATGATTTATGCCTGATCGA+AGG | + | chr4.2:87879552-87879571 | None:intergenic | 40.0% | |
| GGATCTTTAGCAGAATCAGA+TGG | + | chr4.2:87880712-87880731 | None:intergenic | 40.0% | |
| TATGGCTATACATAACCCAG+TGG | + | chr4.2:87880453-87880472 | None:intergenic | 40.0% | |
| TCAACATGATGTTGCATGTG+TGG | - | chr4.2:87879709-87879728 | MS.gene33379:CDS | 40.0% | |
| TGTTCTTTGTACCGTGGTAT+GGG | - | chr4.2:87879384-87879403 | MS.gene33379:CDS | 40.0% | |
| TTGTTCTTTGTACCGTGGTA+TGG | - | chr4.2:87879383-87879402 | MS.gene33379:CDS | 40.0% | |
| ! | AATACTATGTTGGTGTCTGG+AGG | - | chr4.2:87881042-87881061 | MS.gene33379:intron | 40.0% |
| ! | AATCTCTGATGGATGCGATT+TGG | - | chr4.2:87879782-87879801 | MS.gene33379:CDS | 40.0% |
| ! | CATGTCATTGTATTGGTAGG+TGG | + | chr4.2:87880326-87880345 | None:intergenic | 40.0% |
| ! | GGTTTTTGTTCTTTGTACCG+TGG | - | chr4.2:87879378-87879397 | MS.gene33379:CDS | 40.0% |
| ! | GTTGATAAGATCCTTCGATC+AGG | - | chr4.2:87879538-87879557 | MS.gene33379:CDS | 40.0% |
| ! | TTGTTCCGGATTCTTTTGAC+TGG | + | chr4.2:87880846-87880865 | None:intergenic | 40.0% |
| !! | CGAATTTTGATCAACTCCAC+TGG | + | chr4.2:87880802-87880821 | None:intergenic | 40.0% |
| !! | TACAAGAGTGTTGCATTAGG+CGG | - | chr4.2:87880739-87880758 | MS.gene33379:intron | 40.0% |
| !! | TCCTACAAGAGTGTTGCATT+AGG | - | chr4.2:87880736-87880755 | MS.gene33379:intron | 40.0% |
| !!! | TGACCACTTTTTCTACAACC+TGG | + | chr4.2:87881012-87881031 | None:intergenic | 40.0% |
| AAGAAGGATACCCTGTGTTG+TGG | - | chr4.2:87881193-87881212 | MS.gene33379:CDS | 45.0% | |
| AGTGTTGCATTAGGCGGAAT+GGG | - | chr4.2:87880745-87880764 | MS.gene33379:intron | 45.0% | |
| CAACAAAGTGGTGGCCAAAA+TGG | - | chr4.2:87879315-87879334 | MS.gene33379:CDS | 45.0% | |
| CTGAATCCCCTACTATGGTA+TGG | - | chr4.2:87880103-87880122 | MS.gene33379:intron | 45.0% | |
| GCCTAATGCAACACTCTTGT+AGG | + | chr4.2:87880740-87880759 | None:intergenic | 45.0% | |
| GGCACTGCTGGTATAATTTC+TGG | - | chr4.2:87879264-87879283 | MS.gene33379:CDS | 45.0% | |
| TCAGGTAGAGAATTTGTGGC+TGG | - | chr4.2:87879231-87879250 | MS.gene33379:CDS | 45.0% | |
| TGGATCTGAATCCCCTACTA+TGG | - | chr4.2:87880098-87880117 | MS.gene33379:intron | 45.0% | |
| ! | ATTTTCACATGAGCCAGGTG+AGG | - | chr4.2:87880075-87880094 | MS.gene33379:intron | 45.0% |
| !! | ACGAAGAGTGTCAGAGAAGA+AGG | - | chr4.2:87881177-87881196 | MS.gene33379:CDS | 45.0% |
| !! | GAATTTGTGGCTGGTGGATT+TGG | - | chr4.2:87879240-87879259 | MS.gene33379:CDS | 45.0% |
| !! | GCCAGAGCATTTGTTGTGAA+TGG | - | chr4.2:87881237-87881256 | MS.gene33379:CDS | 45.0% |
| !! | ACAAATATAAAATTAATAAA+AGG | + | chr4.2:87879942-87879961 | None:intergenic | 5.0% |
| !!! | TAATATTAATTTTTTAGATA+TGG | - | chr4.2:87879666-87879685 | MS.gene33379:CDS | 5.0% |
| !!! | TAATTATTGTTTTTTTTAAT+TGG | - | chr4.2:87879887-87879906 | MS.gene33379:intron | 5.0% |
| !!! | TTAATTATTTTTTTGTTTTT+CGG | - | chr4.2:87880632-87880651 | MS.gene33379:intron | 5.0% |
| GCAACACTCTTGTAGGATGG+AGG | + | chr4.2:87880733-87880752 | None:intergenic | 50.0% | |
| GGTAGAGAATTTGTGGCTGG+TGG | - | chr4.2:87879234-87879253 | MS.gene33379:CDS | 50.0% | |
| TGGAGAAAAGAGGGTTTGCG+CGG | - | chr4.2:87880892-87880911 | MS.gene33379:intron | 50.0% | |
| ! | ATGAAGTTTGTGGGTGCCAC+TGG | - | chr4.2:87880434-87880453 | MS.gene33379:intron | 50.0% |
| ! | GAGTGTTGCATTAGGCGGAA+TGG | - | chr4.2:87880744-87880763 | MS.gene33379:intron | 50.0% |
| ! | GTTGGTGTCTGGAGGATTAG+CGG | - | chr4.2:87881050-87881069 | MS.gene33379:intron | 50.0% |
| ! | TTGGTGTCTGGAGGATTAGC+GGG | - | chr4.2:87881051-87881070 | MS.gene33379:intron | 50.0% |
| ! | TTTTCGGTGGCAGAATGCTG+TGG | - | chr4.2:87880648-87880667 | MS.gene33379:intron | 50.0% |
| !! | TGAAGTTTGTGGGTGCCACT+GGG | - | chr4.2:87880435-87880454 | MS.gene33379:intron | 50.0% |
| !! | TTTGTGGCTGGTGGATTTGG+AGG | - | chr4.2:87879243-87879262 | MS.gene33379:CDS | 50.0% |
| CCAATGGTGCACCCATACCA+CGG | + | chr4.2:87879398-87879417 | None:intergenic | 55.0% | |
| CGCGGCATATATCGAGGACT+TGG | - | chr4.2:87880910-87880929 | MS.gene33379:intron | 55.0% | |
| CTAAACCGCGCCACAACACA+GGG | + | chr4.2:87881206-87881225 | None:intergenic | 55.0% | |
| GGATTCAGATCCACCTCACC+TGG | + | chr4.2:87880091-87880110 | None:intergenic | 55.0% | |
| GGTTTGCGCGGCATATATCG+AGG | - | chr4.2:87880904-87880923 | MS.gene33379:intron | 55.0% | |
| TTCACATGAGCCAGGTGAGG+TGG | - | chr4.2:87880078-87880097 | MS.gene33379:intron | 55.0% | |
| ! | TGGTGTCTGGAGGATTAGCG+GGG | - | chr4.2:87881052-87881071 | MS.gene33379:intron | 55.0% |
| ATTAGCGGGGGTAGCGAGCT+GGG | - | chr4.2:87881065-87881084 | MS.gene33379:intron | 60.0% | |
| CCGTGGTATGGGTGCACCAT+TGG | - | chr4.2:87879395-87879414 | MS.gene33379:CDS | 60.0% | |
| CCTAAACCGCGCCACAACAC+AGG | + | chr4.2:87881207-87881226 | None:intergenic | 60.0% | |
| CCTGTGTTGTGGCGCGGTTT+AGG | - | chr4.2:87881204-87881223 | MS.gene33379:CDS | 60.0% | |
| GCATTAGGCGGAATGGGCAC+AGG | - | chr4.2:87880751-87880770 | MS.gene33379:intron | 60.0% | |
| GGATACCCTGTGTTGTGGCG+CGG | - | chr4.2:87881198-87881217 | MS.gene33379:CDS | 60.0% | |
| GTGGCGCGGTTTAGGAACTG+CGG | - | chr4.2:87881212-87881231 | MS.gene33379:CDS | 60.0% | |
| TTAGGCGGAATGGGCACAGG+AGG | - | chr4.2:87880754-87880773 | MS.gene33379:intron | 60.0% | |
| ! | GGTGTCTGGAGGATTAGCGG+GGG | - | chr4.2:87881053-87881072 | MS.gene33379:intron | 60.0% |
| !! | GGTGGATTTGGAGGCACTGC+TGG | - | chr4.2:87879252-87879271 | MS.gene33379:CDS | 60.0% |
| GATTAGCGGGGGTAGCGAGC+TGG | - | chr4.2:87881064-87881083 | MS.gene33379:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 87879198 | 87881338 | 87879198 | ID=MS.gene33379 |
| chr4.2 | mRNA | 87879198 | 87881338 | 87879198 | ID=MS.gene33379.t1;Parent=MS.gene33379 |
| chr4.2 | exon | 87881102 | 87881338 | 87881102 | ID=MS.gene33379.t1.exon1;Parent=MS.gene33379.t1 |
| chr4.2 | CDS | 87881102 | 87881338 | 87881102 | ID=cds.MS.gene33379.t1;Parent=MS.gene33379.t1 |
| chr4.2 | exon | 87879198 | 87879875 | 87879198 | ID=MS.gene33379.t1.exon2;Parent=MS.gene33379.t1 |
| chr4.2 | CDS | 87879198 | 87879875 | 87879198 | ID=cds.MS.gene33379.t1;Parent=MS.gene33379.t1 |
| Gene Sequence |
| Protein sequence |
