Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028102.t1 | AGQ42774.1 | 99.4 | 321 | 1 | 1 | 1 | 321 | 16 | 335 | 1.40E-185 | 658.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028102.t1 | Q39219 | 79.7 | 311 | 60 | 1 | 14 | 321 | 44 | 354 | 3.0e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028102.t1 | S5FNL5 | 99.4 | 321 | 1 | 1 | 1 | 321 | 16 | 335 | 1.0e-185 | 658.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70368 | MS.gene028102 | PPI |
| MS.gene028441 | MS.gene028102 | PPI |
| MS.gene90178 | MS.gene028102 | PPI |
| MS.gene35020 | MS.gene028102 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028102.t1 | MTR_5g026620 | 95.950 | 321 | 10 | 2 | 1 | 321 | 13 | 330 | 0.0 | 643 |
| MS.gene028102.t1 | MTR_5g026620 | 98.667 | 225 | 3 | 0 | 97 | 321 | 38 | 262 | 2.37e-169 | 471 |
| MS.gene028102.t1 | MTR_4g094222 | 75.600 | 250 | 61 | 0 | 72 | 321 | 96 | 345 | 1.07e-149 | 424 |
| MS.gene028102.t1 | MTR_5g070680 | 67.424 | 264 | 86 | 0 | 58 | 321 | 60 | 323 | 8.48e-140 | 398 |
| MS.gene028102.t1 | MTR_5g070870 | 64.085 | 284 | 92 | 1 | 38 | 321 | 51 | 324 | 2.13e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028102.t1 | AT3G22370 | 79.743 | 311 | 60 | 1 | 14 | 321 | 44 | 354 | 0.0 | 522 |
| MS.gene028102.t1 | AT3G22360 | 84.249 | 273 | 41 | 1 | 51 | 321 | 53 | 325 | 2.40e-176 | 491 |
| MS.gene028102.t1 | AT3G27620 | 82.528 | 269 | 39 | 1 | 61 | 321 | 61 | 329 | 2.97e-169 | 473 |
| MS.gene028102.t1 | AT1G32350 | 70.652 | 276 | 73 | 1 | 54 | 321 | 43 | 318 | 1.35e-154 | 436 |
| MS.gene028102.t1 | AT5G64210 | 70.438 | 274 | 75 | 2 | 50 | 321 | 84 | 353 | 3.52e-148 | 421 |
| MS.gene028102.t1 | AT1G32350 | 70.817 | 257 | 67 | 1 | 54 | 302 | 43 | 299 | 2.09e-143 | 407 |
Find 80 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATACGGTGTGCAAATT+TGG | 0.112313 | 5.2:+17464422 | None:intergenic |
| TTCCTCAAAACTCTACTTTA+AGG | 0.145682 | 5.2:-17464287 | MS.gene028102:CDS |
| TTCTGGACAAGATGGCTTAT+TGG | 0.228191 | 5.2:-17465750 | MS.gene028102:CDS |
| TTCTTCAATGCTTATTTCTT+AGG | 0.252741 | 5.2:-17464459 | MS.gene028102:CDS |
| ATTGGACTGTTAAGAGTCTT+AGG | 0.253076 | 5.2:-17465732 | MS.gene028102:CDS |
| GGTGATAACAAAGATGAAAA+AGG | 0.272034 | 5.2:-17466010 | MS.gene028102:CDS |
| ACGAAATAACCCCATTTGTT+TGG | 0.275926 | 5.2:+17466151 | None:intergenic |
| AAAAGGGATTACCAGTTATT+GGG | 0.302542 | 5.2:-17465993 | MS.gene028102:CDS |
| TTTGCAAAGAAGGGTTTATT+AGG | 0.324829 | 5.2:-17466190 | MS.gene028102:CDS |
| AATGGAAATGGAATTGCTTC+AGG | 0.325465 | 5.2:-17465931 | MS.gene028102:CDS |
| CCACTTCCATGAAAGTCATT+AGG | 0.338652 | 5.2:+17464532 | None:intergenic |
| CGTAATGTTGTTTGCAAAGA+AGG | 0.348388 | 5.2:-17466200 | None:intergenic |
| CAGCTATTGCTATTGACTAT+TGG | 0.356927 | 5.2:-17464314 | MS.gene028102:CDS |
| GGGATGTTGTCGAGGTTGTC+AGG | 0.363968 | 5.2:-17464266 | MS.gene028102:CDS |
| CATGCACCTAATGACTTTCA+TGG | 0.370912 | 5.2:-17464538 | MS.gene028102:CDS |
| ACCATACGGTGTGCAAATTT+GGG | 0.381391 | 5.2:+17464423 | None:intergenic |
| TCCTCAAAACTCTACTTTAA+GGG | 0.382420 | 5.2:-17464286 | MS.gene028102:CDS |
| GATCAACAACCCCTCTTGTA+AGG | 0.418814 | 5.2:-17466126 | MS.gene028102:CDS |
| GGTTTATTAGGTGGTGAAGT+TGG | 0.424159 | 5.2:-17466178 | MS.gene028102:CDS |
| AGGTTGAACACCCCAATAAC+TGG | 0.436601 | 5.2:+17465982 | None:intergenic |
| AGGGAGGCTGCTGCTCCAAT+TGG | 0.436968 | 5.2:-17463889 | MS.gene028102:CDS |
| CATTTCCATTCAGTACCATC+TGG | 0.440119 | 5.2:+17465944 | None:intergenic |
| CAGATGGTACTGAATGGAAA+TGG | 0.440215 | 5.2:-17465943 | MS.gene028102:CDS |
| AAGTTGGTGTTCCAAACAAA+TGG | 0.440248 | 5.2:-17466162 | MS.gene028102:CDS |
| AGTTGGTGTTCCAAACAAAT+GGG | 0.442514 | 5.2:-17466161 | MS.gene028102:CDS |
| AGCATTCCTCCTACCATGCC+AGG | 0.449536 | 5.2:+17464642 | None:intergenic |
| TCGTCGTCTCAGGGTGGTGC+TGG | 0.451393 | 5.2:-17466031 | MS.gene028102:CDS |
| ATTACCAAGGACGAGAGTTA+AGG | 0.452922 | 5.2:-17463909 | MS.gene028102:CDS |
| TTACCAAGGACGAGAGTTAA+GGG | 0.457110 | 5.2:-17463908 | MS.gene028102:CDS |
| TGCACTTGTCATAACTGTCC+AGG | 0.463520 | 5.2:-17464487 | MS.gene028102:CDS |
| ATCTTGTCCAGAAAAGTTGT+TGG | 0.465005 | 5.2:+17465760 | None:intergenic |
| GGTATCTAGTGATAACCAAT+TGG | 0.473206 | 5.2:+17463874 | None:intergenic |
| GAGACAGTAGCTGCTGTCCC+TGG | 0.491184 | 5.2:-17464660 | MS.gene028102:CDS |
| ATCCACCACTGTGCTCAAAT+CGG | 0.492142 | 5.2:+17464598 | None:intergenic |
| GCTGCTGTCCCTGGCATGGT+AGG | 0.504751 | 5.2:-17464651 | MS.gene028102:CDS |
| TCAATAGCAATAGCTGGAGC+AGG | 0.506103 | 5.2:+17464321 | None:intergenic |
| ACCCAAATTTGCACACCGTA+TGG | 0.511597 | 5.2:-17464424 | MS.gene028102:CDS |
| CCTAATGACTTTCATGGAAG+TGG | 0.513462 | 5.2:-17464532 | MS.gene028102:CDS |
| ATGGAAATGGAATTGCTTCA+GGG | 0.515778 | 5.2:-17465930 | MS.gene028102:intron |
| TAATTGAAACAGAGAAGGTA+TGG | 0.517621 | 5.2:-17464702 | MS.gene028102:intron |
| TACTTTAAGGGATGTTGTCG+AGG | 0.527952 | 5.2:-17464274 | MS.gene028102:CDS |
| CCTCCCTTAACTCTCGTCCT+TGG | 0.532033 | 5.2:+17463905 | None:intergenic |
| CAAAACCAGATGGTACTGAA+TGG | 0.540728 | 5.2:-17465949 | MS.gene028102:CDS |
| GTAATGTTGTTTGCAAAGAA+GGG | 0.540746 | 5.2:-17466199 | MS.gene028102:CDS |
| AGTGCACGCTCATACCACTT+TGG | 0.545912 | 5.2:+17464504 | None:intergenic |
| GGATGTTGTCGAGGTTGTCA+GGG | 0.547504 | 5.2:-17464265 | MS.gene028102:CDS |
| GCAAAGAAGGGTTTATTAGG+TGG | 0.547710 | 5.2:-17466187 | MS.gene028102:CDS |
| TGCTAATCTGTCAGATCAGA+AGG | 0.555356 | 5.2:-17466086 | MS.gene028102:CDS |
| GCTGTCCCTGGCATGGTAGG+AGG | 0.556200 | 5.2:-17464648 | MS.gene028102:CDS |
| CTGTCTCAAGCATCATTGCT+CGG | 0.558637 | 5.2:+17464676 | None:intergenic |
| AAATTTGCACACCGTATGGT+TGG | 0.563076 | 5.2:-17464420 | MS.gene028102:CDS |
| GTTTCTCAAGGAGCTTGACA+AGG | 0.563279 | 5.2:-17464361 | MS.gene028102:CDS |
| CTCATACACTGAGTTTCTCA+AGG | 0.566793 | 5.2:-17464373 | MS.gene028102:CDS |
| CAATAGTCAATAGCAATAGC+TGG | 0.570433 | 5.2:+17464315 | None:intergenic |
| TGCTTGCGTTCCTTACAAGA+GGG | 0.572460 | 5.2:+17466116 | None:intergenic |
| AAAGGGATTACCAGTTATTG+GGG | 0.581745 | 5.2:-17465992 | MS.gene028102:CDS |
| CGCCGATTTGAGCACAGTGG+TGG | 0.585049 | 5.2:-17464600 | MS.gene028102:CDS |
| GATTTGAGCACAGTGGTGGA+TGG | 0.585457 | 5.2:-17464596 | MS.gene028102:CDS |
| AGTGAATAGCTTCTTCCTCA+AGG | 0.587319 | 5.2:+17464394 | None:intergenic |
| GTGCTTGCGTTCCTTACAAG+AGG | 0.587389 | 5.2:+17466115 | None:intergenic |
| AGTAGCTGCTGTCCCTGGCA+TGG | 0.598186 | 5.2:-17464655 | MS.gene028102:CDS |
| CAATAGCAATAGCTGGAGCA+GGG | 0.618562 | 5.2:+17464322 | None:intergenic |
| CGATGTTAACCACTTTGCAT+CGG | 0.619490 | 5.2:-17464223 | MS.gene028102:intron |
| TCTGCTTTATATGTCTCCCA+TGG | 0.622545 | 5.2:+17465814 | None:intergenic |
| GCACTTGTCATAACTGTCCA+GGG | 0.622780 | 5.2:-17464486 | MS.gene028102:CDS |
| CCTCAAGGTAACCAACCATA+CGG | 0.624191 | 5.2:+17464409 | None:intergenic |
| GCTTGCGTTCCTTACAAGAG+GGG | 0.632754 | 5.2:+17466117 | None:intergenic |
| GACAACATACCGATGCAAAG+TGG | 0.644093 | 5.2:+17464214 | None:intergenic |
| CCCTGAGACGACGACGACGA+CGG | 0.644525 | 5.2:+17466040 | None:intergenic |
| TCTAAGATCACAAAACCAGA+TGG | 0.647284 | 5.2:-17465959 | MS.gene028102:CDS |
| CCGTATGGTTGGTTACCTTG+AGG | 0.649479 | 5.2:-17464409 | MS.gene028102:CDS |
| GCATTCCTCCTACCATGCCA+GGG | 0.651988 | 5.2:+17464643 | None:intergenic |
| TTTCTCAAGGAGCTTGACAA+GGG | 0.653346 | 5.2:-17464360 | MS.gene028102:CDS |
| GTTGGTGTTCCAAACAAATG+GGG | 0.661779 | 5.2:-17466160 | MS.gene028102:CDS |
| TGGAAGTGGCAAAACCAAAG+TGG | 0.670752 | 5.2:-17464518 | MS.gene028102:CDS |
| AAGCATTGAAGAAAACACCC+TGG | 0.672042 | 5.2:+17464469 | None:intergenic |
| TTGCAGGATATACATTACCA+AGG | 0.701646 | 5.2:-17463922 | MS.gene028102:intron |
| TCGTCGTCGTCGTCTCAGGG+TGG | 0.724572 | 5.2:-17466037 | MS.gene028102:CDS |
| CCAAGGACGAGAGTTAAGGG+AGG | 0.747025 | 5.2:-17463905 | MS.gene028102:CDS |
| TTGCGCCGATTTGAGCACAG+TGG | 0.750440 | 5.2:-17464603 | MS.gene028102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAATAAAAAA+TGG | - | chr5.2:17464560-17464579 | MS.gene028102:CDS | 0.0% |
| !!! | TATATATTTTATTTATTTTA+TGG | - | chr5.2:17464629-17464648 | MS.gene028102:CDS | 0.0% |
| !! | ATTATTATAATTTCAAAATC+CGG | - | chr5.2:17464436-17464455 | MS.gene028102:CDS | 10.0% |
| !!! | AAATGATTTTTTTTTTAATG+TGG | - | chr5.2:17464222-17464241 | MS.gene028102:intron | 10.0% |
| !! | AAACTTTGAACATAATTTAT+AGG | + | chr5.2:17465292-17465311 | None:intergenic | 15.0% |
| !! | AAATAAAAAATTGCTTAAAC+TGG | - | chr5.2:17465121-17465140 | MS.gene028102:intron | 15.0% |
| !! | ATTCAAATTTCATTCTTATT+AGG | + | chr5.2:17465226-17465245 | None:intergenic | 15.0% |
| !! | TTATTATAATTTCAAAATCC+GGG | - | chr5.2:17464437-17464456 | MS.gene028102:CDS | 15.0% |
| !! | TTCAAATTTCATTCTTATTA+GGG | + | chr5.2:17465225-17465244 | None:intergenic | 15.0% |
| !!! | AAAAATAAAAAATGGATTTC+AGG | - | chr5.2:17464568-17464587 | MS.gene028102:CDS | 15.0% |
| !!! | ATTTTATTTATTTTATGGTC+AGG | - | chr5.2:17464634-17464653 | MS.gene028102:CDS | 15.0% |
| !!! | ATTTTTATTTTTTTCATAGG+AGG | + | chr5.2:17464554-17464573 | None:intergenic | 15.0% |
| !! | AACACACATTAAAAATATGA+TGG | + | chr5.2:17464829-17464848 | None:intergenic | 20.0% |
| !! | ACAATTATATTGTTCTTTAG+AGG | + | chr5.2:17465062-17465081 | None:intergenic | 20.0% |
| !! | GTAGCTTATAGATAAATAAA+TGG | + | chr5.2:17465918-17465937 | None:intergenic | 20.0% |
| !! | TTATGCATGATTGAATATTT+AGG | + | chr5.2:17464853-17464872 | None:intergenic | 20.0% |
| !!! | ACATAAAATACTTTTGATCT+TGG | + | chr5.2:17465331-17465350 | None:intergenic | 20.0% |
| !!! | GGATTTTTTTTTAAACCAAA+AGG | + | chr5.2:17465015-17465034 | None:intergenic | 20.0% |
| ! | AATAAAAATCCACCATAAGA+TGG | - | chr5.2:17464980-17464999 | MS.gene028102:intron | 25.0% |
| ! | ACACATTAAAAATATGATGG+CGG | + | chr5.2:17464826-17464845 | None:intergenic | 25.0% |
| ! | CATAATAAAAAGACAGATCA+TGG | + | chr5.2:17465968-17465987 | None:intergenic | 25.0% |
| ! | GTATTTAATTGAAACAGAGA+AGG | - | chr5.2:17465368-17465387 | MS.gene028102:intron | 25.0% |
| ! | GTGATAACAAAGATGAAAAA+GGG | - | chr5.2:17464066-17464085 | MS.gene028102:intron | 25.0% |
| ! | TACCATACAGTATAAAACAT+TGG | + | chr5.2:17464958-17464977 | None:intergenic | 25.0% |
| ! | TTTCAGGAATTACAATTTAC+TGG | - | chr5.2:17464584-17464603 | MS.gene028102:CDS | 25.0% |
| !! | ATCCAATGTTTTATACTGTA+TGG | - | chr5.2:17464953-17464972 | MS.gene028102:intron | 25.0% |
| !! | TTCTTCAATGCTTATTTCTT+AGG | - | chr5.2:17465616-17465635 | MS.gene028102:intron | 25.0% |
| !! | TTTCTAAAAAGACACAACTA+TGG | + | chr5.2:17466056-17466075 | None:intergenic | 25.0% |
| !!! | TAGTTGTGTCTTTTTAGAAA+TGG | - | chr5.2:17466056-17466075 | MS.gene028102:CDS | 25.0% |
| !!! | TTCATCTGAGTATTTTGAAT+GGG | - | chr5.2:17466095-17466114 | MS.gene028102:CDS | 25.0% |
| !!! | TTTTAAGGTACTTTTGTTCA+AGG | - | chr5.2:17464800-17464819 | MS.gene028102:intron | 25.0% |
| AAAAAGGGATTACCAGTTAT+TGG | - | chr5.2:17464081-17464100 | MS.gene028102:intron | 30.0% | |
| AAAAGGGATTACCAGTTATT+GGG | - | chr5.2:17464082-17464101 | MS.gene028102:intron | 30.0% | |
| ATAGGATAGTAAGTTCATCA+AGG | + | chr5.2:17465274-17465293 | None:intergenic | 30.0% | |
| CATTCAAAATACTCAGATGA+AGG | + | chr5.2:17466096-17466115 | None:intergenic | 30.0% | |
| CTATAAGCTACAAATTCAAG+AGG | - | chr5.2:17465927-17465946 | MS.gene028102:intron | 30.0% | |
| GGTGATAACAAAGATGAAAA+AGG | - | chr5.2:17464065-17464084 | MS.gene028102:intron | 30.0% | |
| TAACAATAATAGCTAGCAAG+TGG | + | chr5.2:17465036-17465055 | None:intergenic | 30.0% | |
| TAATTGAAACAGAGAAGGTA+TGG | - | chr5.2:17465373-17465392 | MS.gene028102:intron | 30.0% | |
| TAGGATAGTAAGTTCATCAA+GGG | + | chr5.2:17465273-17465292 | None:intergenic | 30.0% | |
| TCCTCAAAACTCTACTTTAA+GGG | - | chr5.2:17465789-17465808 | MS.gene028102:CDS | 30.0% | |
| TTCCTCAAAACTCTACTTTA+AGG | - | chr5.2:17465788-17465807 | MS.gene028102:CDS | 30.0% | |
| TTTGCAAAGAAGGGTTTATT+AGG | - | chr5.2:17463885-17463904 | MS.gene028102:CDS | 30.0% | |
| ! | AAGTACCTTAAAACCTTTTC+AGG | + | chr5.2:17464793-17464812 | None:intergenic | 30.0% |
| ! | GTTTTCATGTAATGAATTGC+AGG | - | chr5.2:17466137-17466156 | MS.gene028102:CDS | 30.0% |
| ! | TAACTCCTGAAAAGGTTTTA+AGG | - | chr5.2:17464785-17464804 | MS.gene028102:intron | 30.0% |
| ! | TCATAAACCAACAACTTTTC+TGG | - | chr5.2:17464308-17464327 | MS.gene028102:CDS | 30.0% |
| ! | TTTTATGGTCAGGATTTGAA+AGG | - | chr5.2:17464644-17464663 | MS.gene028102:CDS | 30.0% |
| !! | CTTCATCTGAGTATTTTGAA+TGG | - | chr5.2:17466094-17466113 | MS.gene028102:CDS | 30.0% |
| !! | TTAAAACCTTTTCAGGAGTT+AGG | + | chr5.2:17464786-17464805 | None:intergenic | 30.0% |
| !!! | TGATCTCTTTTTTCAGGTAA+TGG | - | chr5.2:17464374-17464393 | MS.gene028102:CDS | 30.0% |
| AAAGGGATTACCAGTTATTG+GGG | - | chr5.2:17464083-17464102 | MS.gene028102:intron | 35.0% | |
| AATGGAAATGGAATTGCTTC+AGG | - | chr5.2:17464144-17464163 | MS.gene028102:intron | 35.0% | |
| ACCTGAAAAAAGAGATCAGT+TGG | + | chr5.2:17464372-17464391 | None:intergenic | 35.0% | |
| ACGAAATAACCCCATTTGTT+TGG | + | chr5.2:17463927-17463946 | None:intergenic | 35.0% | |
| AGGATAGTAAGTTCATCAAG+GGG | + | chr5.2:17465272-17465291 | None:intergenic | 35.0% | |
| ATCTTGTCCAGAAAAGTTGT+TGG | + | chr5.2:17464318-17464337 | None:intergenic | 35.0% | |
| ATGGAAATGGAATTGCTTCA+GGG | - | chr5.2:17464145-17464164 | MS.gene028102:intron | 35.0% | |
| ATTGGACTGTTAAGAGTCTT+AGG | - | chr5.2:17464343-17464362 | MS.gene028102:CDS | 35.0% | |
| CAATAGTCAATAGCAATAGC+TGG | + | chr5.2:17465763-17465782 | None:intergenic | 35.0% | |
| CATCTAATCTTTATCGGAAG+AGG | - | chr5.2:17464520-17464539 | MS.gene028102:CDS | 35.0% | |
| CTCTTCCGATAAAGATTAGA+TGG | + | chr5.2:17464522-17464541 | None:intergenic | 35.0% | |
| GCGAACCATCTAATCTTTAT+CGG | - | chr5.2:17464514-17464533 | MS.gene028102:CDS | 35.0% | |
| GTCAGTTGGTTACATGAAAT+GGG | - | chr5.2:17464917-17464936 | MS.gene028102:intron | 35.0% | |
| TAATTTCAAAATCCGGGTTC+TGG | - | chr5.2:17464443-17464462 | MS.gene028102:CDS | 35.0% | |
| TGCATAATGCATGTGATGTT+TGG | - | chr5.2:17464866-17464885 | MS.gene028102:intron | 35.0% | |
| TTGCAGGATATACATTACCA+AGG | - | chr5.2:17466153-17466172 | MS.gene028102:CDS | 35.0% | |
| ! | AACAACTTTTCTGGACAAGA+TGG | - | chr5.2:17464317-17464336 | MS.gene028102:CDS | 35.0% |
| ! | AGTTGGTGTTCCAAACAAAT+GGG | - | chr5.2:17463914-17463933 | MS.gene028102:CDS | 35.0% |
| ! | CAGCTATTGCTATTGACTAT+TGG | - | chr5.2:17465761-17465780 | MS.gene028102:CDS | 35.0% |
| ! | TCCCTTAAAGTAGAGTTTTG+AGG | + | chr5.2:17465793-17465812 | None:intergenic | 35.0% |
| ! | TCTAAGATCACAAAACCAGA+TGG | - | chr5.2:17464116-17464135 | MS.gene028102:intron | 35.0% |
| !! | AAGTTGGTGTTCCAAACAAA+TGG | - | chr5.2:17463913-17463932 | MS.gene028102:CDS | 35.0% |
| !! | AGATGGTGCTTTTTACCTTT+TGG | - | chr5.2:17464997-17465016 | MS.gene028102:intron | 35.0% |
| !! | AGGTAAAAAGCACCATCTTA+TGG | + | chr5.2:17464995-17465014 | None:intergenic | 35.0% |
| !! | TAAAAAGCACCATCTTATGG+TGG | + | chr5.2:17464992-17465011 | None:intergenic | 35.0% |
| !!! | ATTTTGATTGTGACAGCCAT+GGG | - | chr5.2:17464245-17464264 | MS.gene028102:CDS | 35.0% |
| !!! | TCCAACTGATCTCTTTTTTC+AGG | - | chr5.2:17464368-17464387 | MS.gene028102:CDS | 35.0% |
| !!! | TCTGGTTTTGTGATCTTAGA+AGG | + | chr5.2:17464116-17464135 | None:intergenic | 35.0% |
| AAATTTGCACACCGTATGGT+TGG | - | chr5.2:17465655-17465674 | MS.gene028102:intron | 40.0% | |
| AACCATACGGTGTGCAAATT+TGG | + | chr5.2:17465656-17465675 | None:intergenic | 40.0% | |
| ACCATACGGTGTGCAAATTT+GGG | + | chr5.2:17465655-17465674 | None:intergenic | 40.0% | |
| AGTGAATAGCTTCTTCCTCA+AGG | + | chr5.2:17465684-17465703 | None:intergenic | 40.0% | |
| ATTACCAAGGACGAGAGTTA+AGG | - | chr5.2:17466166-17466185 | MS.gene028102:CDS | 40.0% | |
| CATGCACCTAATGACTTTCA+TGG | - | chr5.2:17465537-17465556 | MS.gene028102:intron | 40.0% | |
| CATTTCCATTCAGTACCATC+TGG | + | chr5.2:17464134-17464153 | None:intergenic | 40.0% | |
| CCACTTCCATGAAAGTCATT+AGG | + | chr5.2:17465546-17465565 | None:intergenic | 40.0% | |
| CCTAATGACTTTCATGGAAG+TGG | - | chr5.2:17465543-17465562 | MS.gene028102:intron | 40.0% | |
| CGATGTTAACCACTTTGCAT+CGG | - | chr5.2:17465852-17465871 | MS.gene028102:intron | 40.0% | |
| CTCATACACTGAGTTTCTCA+AGG | - | chr5.2:17465702-17465721 | MS.gene028102:intron | 40.0% | |
| GCAAAGAAGGGTTTATTAGG+TGG | - | chr5.2:17463888-17463907 | MS.gene028102:CDS | 40.0% | |
| GGTCAGTTGGTTACATGAAA+TGG | - | chr5.2:17464916-17464935 | MS.gene028102:intron | 40.0% | |
| GGTTTATTAGGTGGTGAAGT+TGG | - | chr5.2:17463897-17463916 | MS.gene028102:CDS | 40.0% | |
| GTTACACCTAACTCCTGAAA+AGG | - | chr5.2:17464777-17464796 | MS.gene028102:intron | 40.0% | |
| TAGATGGTTCGCTACATTGT+GGG | + | chr5.2:17464506-17464525 | None:intergenic | 40.0% | |
| TCTGCTTTATATGTCTCCCA+TGG | + | chr5.2:17464264-17464283 | None:intergenic | 40.0% | |
| TGCTAATCTGTCAGATCAGA+AGG | - | chr5.2:17463989-17464008 | MS.gene028102:intron | 40.0% | |
| TTACCAAGGACGAGAGTTAA+GGG | - | chr5.2:17466167-17466186 | MS.gene028102:CDS | 40.0% | |
| TTAGATGGTTCGCTACATTG+TGG | + | chr5.2:17464507-17464526 | None:intergenic | 40.0% | |
| TTCTGGACAAGATGGCTTAT+TGG | - | chr5.2:17464325-17464344 | MS.gene028102:CDS | 40.0% | |
| TTTCTCAAGGAGCTTGACAA+GGG | - | chr5.2:17465715-17465734 | MS.gene028102:CDS | 40.0% | |
| ! | CAAAACCAGATGGTACTGAA+TGG | - | chr5.2:17464126-17464145 | MS.gene028102:intron | 40.0% |
| ! | CAGATGGTACTGAATGGAAA+TGG | - | chr5.2:17464132-17464151 | MS.gene028102:intron | 40.0% |
| ! | GTTGGTGTTCCAAACAAATG+GGG | - | chr5.2:17463915-17463934 | MS.gene028102:CDS | 40.0% |
| ! | TACTTTAAGGGATGTTGTCG+AGG | - | chr5.2:17465801-17465820 | MS.gene028102:CDS | 40.0% |
| !! | AAGCATTGAAGAAAACACCC+TGG | + | chr5.2:17465609-17465628 | None:intergenic | 40.0% |
| !! | CATGTGATGTTTGGCTTGTT+TGG | - | chr5.2:17464875-17464894 | MS.gene028102:intron | 40.0% |
| !!! | GATTTTGATTGTGACAGCCA+TGG | - | chr5.2:17464244-17464263 | MS.gene028102:CDS | 40.0% |
| ACCCAAATTTGCACACCGTA+TGG | - | chr5.2:17465651-17465670 | MS.gene028102:intron | 45.0% | |
| AGGTTGAACACCCCAATAAC+TGG | + | chr5.2:17464096-17464115 | None:intergenic | 45.0% | |
| ATCCACCACTGTGCTCAAAT+CGG | + | chr5.2:17465480-17465499 | None:intergenic | 45.0% | |
| ATGGTCAGGATTTGAAAGGC+TGG | - | chr5.2:17464648-17464667 | MS.gene028102:CDS | 45.0% | |
| ATTGCGCAAGAGTGAGACAA+AGG | + | chr5.2:17465891-17465910 | None:intergenic | 45.0% | |
| CAATAGCAATAGCTGGAGCA+GGG | + | chr5.2:17465756-17465775 | None:intergenic | 45.0% | |
| CCTCAAGGTAACCAACCATA+CGG | + | chr5.2:17465669-17465688 | None:intergenic | 45.0% | |
| CTGTCTCAAGCATCATTGCT+CGG | + | chr5.2:17465402-17465421 | None:intergenic | 45.0% | |
| GACAACATACCGATGCAAAG+TGG | + | chr5.2:17465864-17465883 | None:intergenic | 45.0% | |
| GATCAACAACCCCTCTTGTA+AGG | - | chr5.2:17463949-17463968 | MS.gene028102:intron | 45.0% | |
| GCACTTGTCATAACTGTCCA+GGG | - | chr5.2:17465589-17465608 | MS.gene028102:intron | 45.0% | |
| GTTTCTCAAGGAGCTTGACA+AGG | - | chr5.2:17465714-17465733 | MS.gene028102:CDS | 45.0% | |
| TCAATAGCAATAGCTGGAGC+AGG | + | chr5.2:17465757-17465776 | None:intergenic | 45.0% | |
| TGAGAGTTGGATCTAGCAGA+CGG | - | chr5.2:17464472-17464491 | MS.gene028102:CDS | 45.0% | |
| TGCACTTGTCATAACTGTCC+AGG | - | chr5.2:17465588-17465607 | MS.gene028102:intron | 45.0% | |
| TGCTTGCGTTCCTTACAAGA+GGG | + | chr5.2:17463962-17463981 | None:intergenic | 45.0% | |
| TGGAAGTGGCAAAACCAAAG+TGG | - | chr5.2:17465557-17465576 | MS.gene028102:intron | 45.0% | |
| TGTGCTTTGGTAAGGTCAGT+TGG | - | chr5.2:17464903-17464922 | MS.gene028102:intron | 45.0% | |
| TTGCGCAAGAGTGAGACAAA+GGG | + | chr5.2:17465890-17465909 | None:intergenic | 45.0% | |
| TTGTTTGGACGCATGTGCTT+TGG | - | chr5.2:17464890-17464909 | MS.gene028102:intron | 45.0% | |
| ! | GTTCTGGATCGATTGAGAGT+TGG | - | chr5.2:17464459-17464478 | MS.gene028102:CDS | 45.0% |
| !!! | ATTTTGAAATTATAATAATA+AGG | + | chr5.2:17464435-17464454 | None:intergenic | 5.0% |
| !!! | TTTATTTTTATTTTTTTCAT+AGG | + | chr5.2:17464557-17464576 | None:intergenic | 5.0% |
| AGTGCACGCTCATACCACTT+TGG | + | chr5.2:17465574-17465593 | None:intergenic | 50.0% | |
| CTCTCAATCGATCCAGAACC+CGG | + | chr5.2:17464458-17464477 | None:intergenic | 50.0% | |
| GAGAGTTGGATCTAGCAGAC+GGG | - | chr5.2:17464473-17464492 | MS.gene028102:CDS | 50.0% | |
| GCTTGCGTTCCTTACAAGAG+GGG | + | chr5.2:17463961-17463980 | None:intergenic | 50.0% | |
| GGATGTTGTCGAGGTTGTCA+GGG | - | chr5.2:17465810-17465829 | MS.gene028102:CDS | 50.0% | |
| GTGCTTGCGTTCCTTACAAG+AGG | + | chr5.2:17463963-17463982 | None:intergenic | 50.0% | |
| TGGACGCATGTGCTTTGGTA+AGG | - | chr5.2:17464895-17464914 | MS.gene028102:intron | 50.0% | |
| ! | CCGTATGGTTGGTTACCTTG+AGG | - | chr5.2:17465666-17465685 | MS.gene028102:intron | 50.0% |
| ! | GATTTGAGCACAGTGGTGGA+TGG | - | chr5.2:17465479-17465498 | MS.gene028102:intron | 50.0% |
| AGCATTCCTCCTACCATGCC+AGG | + | chr5.2:17465436-17465455 | None:intergenic | 55.0% | |
| CCAAGGACGAGAGTTAAGGG+AGG | - | chr5.2:17466170-17466189 | MS.gene028102:CDS | 55.0% | |
| CCTCCCTTAACTCTCGTCCT+TGG | + | chr5.2:17466173-17466192 | None:intergenic | 55.0% | |
| GCATTCCTCCTACCATGCCA+GGG | + | chr5.2:17465435-17465454 | None:intergenic | 55.0% | |
| GGGATGTTGTCGAGGTTGTC+AGG | - | chr5.2:17465809-17465828 | MS.gene028102:CDS | 55.0% | |
| !! | TTGCGCCGATTTGAGCACAG+TGG | - | chr5.2:17465472-17465491 | MS.gene028102:intron | 55.0% |
| AGGGAGGCTGCTGCTCCAAT+TGG | - | chr5.2:17466186-17466205 | MS.gene028102:CDS | 60.0% | |
| AGTAGCTGCTGTCCCTGGCA+TGG | - | chr5.2:17465420-17465439 | MS.gene028102:intron | 60.0% | |
| GAGACAGTAGCTGCTGTCCC+TGG | - | chr5.2:17465415-17465434 | MS.gene028102:intron | 60.0% | |
| !! | CGCCGATTTGAGCACAGTGG+TGG | - | chr5.2:17465475-17465494 | MS.gene028102:intron | 60.0% |
| CCCTGAGACGACGACGACGA+CGG | + | chr5.2:17464038-17464057 | None:intergenic | 65.0% | |
| CCGTCGTCGTCGTCGTCTCA+GGG | - | chr5.2:17464035-17464054 | MS.gene028102:intron | 65.0% | |
| GCTGCTGTCCCTGGCATGGT+AGG | - | chr5.2:17465424-17465443 | MS.gene028102:intron | 65.0% | |
| GCTGTCCCTGGCATGGTAGG+AGG | - | chr5.2:17465427-17465446 | MS.gene028102:intron | 65.0% | |
| TCCGTCGTCGTCGTCGTCTC+AGG | - | chr5.2:17464034-17464053 | MS.gene028102:intron | 65.0% | |
| TCGTCGTCGTCGTCTCAGGG+TGG | - | chr5.2:17464038-17464057 | MS.gene028102:intron | 65.0% | |
| TCGTCGTCTCAGGGTGGTGC+TGG | - | chr5.2:17464044-17464063 | MS.gene028102:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 17463879 | 17466218 | 17463879 | ID=MS.gene028102 |
| chr5.2 | mRNA | 17463879 | 17466218 | 17463879 | ID=MS.gene028102.t1;Parent=MS.gene028102 |
| chr5.2 | exon | 17465931 | 17466218 | 17465931 | ID=MS.gene028102.t1.exon1;Parent=MS.gene028102.t1 |
| chr5.2 | CDS | 17465931 | 17466218 | 17465931 | ID=cds.MS.gene028102.t1;Parent=MS.gene028102.t1 |
| chr5.2 | exon | 17465708 | 17465836 | 17465708 | ID=MS.gene028102.t1.exon2;Parent=MS.gene028102.t1 |
| chr5.2 | CDS | 17465708 | 17465836 | 17465708 | ID=cds.MS.gene028102.t1;Parent=MS.gene028102.t1 |
| chr5.2 | exon | 17464224 | 17464712 | 17464224 | ID=MS.gene028102.t1.exon3;Parent=MS.gene028102.t1 |
| chr5.2 | CDS | 17464224 | 17464712 | 17464224 | ID=cds.MS.gene028102.t1;Parent=MS.gene028102.t1 |
| chr5.2 | exon | 17463879 | 17463938 | 17463879 | ID=MS.gene028102.t1.exon4;Parent=MS.gene028102.t1 |
| chr5.2 | CDS | 17463879 | 17463938 | 17463879 | ID=cds.MS.gene028102.t1;Parent=MS.gene028102.t1 |
| Gene Sequence |
| Protein sequence |
