AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028441


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028441.t1 MTR_4g094222 98.165 327 5 1 1 326 1 327 0.0 667
MS.gene028441.t1 MTR_5g070680 65.152 330 94 3 1 330 1 309 2.61e-153 436
MS.gene028441.t1 MTR_5g070870 69.737 304 75 4 29 330 22 310 1.59e-145 417
MS.gene028441.t1 MTR_5g026620 67.925 265 83 1 68 330 52 316 5.42e-137 395
MS.gene028441.t1 MTR_5g026620 76.887 212 49 0 119 330 37 248 2.64e-123 358
MS.gene028441.t1 MTR_2g025140 26.667 180 111 3 158 317 109 287 5.29e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028441.t1 AT5G64210 77.068 266 57 2 67 330 76 339 2.22e-153 438
MS.gene028441.t1 AT3G22370 68.382 272 77 1 68 330 69 340 1.37e-139 403
MS.gene028441.t1 AT3G22360 66.667 267 89 0 64 330 45 311 8.66e-134 387
MS.gene028441.t1 AT1G32350 68.145 248 79 0 79 326 53 300 9.94e-133 384
MS.gene028441.t1 AT3G27620 69.478 249 76 0 82 330 67 315 4.33e-132 383
MS.gene028441.t1 AT1G32350 68.016 247 79 0 79 325 53 299 6.10e-132 382
MS.gene028441.t1 AT4G22260 30.000 180 105 3 158 317 121 299 1.02e-15 78.6

Find 122 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCAAAAGGATGCTAATA+TGG 0.211225 4.1:-19560517 MS.gene028441:CDS
TGTTATGACATCTTTCAATT+TGG 0.225219 4.1:+19561225 None:intergenic
ACGTGGTTGTGTCGAGTTAT+TGG 0.242663 4.1:-19562483 MS.gene028441:CDS
TTCTGGATAAAGTCGCTTAC+AGG 0.257073 4.1:-19562220 MS.gene028441:CDS
ATCTTTCAATTTGGCATCCT+TGG 0.265673 4.1:+19561234 None:intergenic
CGTGGTTGTGTCGAGTTATT+GGG 0.294734 4.1:-19562482 MS.gene028441:CDS
AACTTTGACGGTTAGAATTC+CGG 0.295362 4.1:+19562704 None:intergenic
AAGGGAGTGATATGTCATTT+TGG 0.320592 4.1:-19560605 MS.gene028441:CDS
GAAATGGTATGAGAGATTTC+TGG 0.357389 4.1:-19561452 MS.gene028441:CDS
AGAAATCTCTCATACCATTT+CGG 0.371303 4.1:+19561454 None:intergenic
CAAGTTCTACCATAGTCATT+AGG 0.381374 4.1:+19561482 None:intergenic
GAGAAGAAGGAGGAGAGTTC+CGG 0.382377 4.1:-19562517 MS.gene028441:CDS
CAACTCTATGAGCCACCTTT+GGG 0.383053 4.1:+19561374 None:intergenic
ACAACTCTATGAGCCACCTT+TGG 0.383957 4.1:+19561373 None:intergenic
CAGAGAGGGGTGAAGGAAAG+TGG 0.385426 4.1:-19560473 MS.gene028441:CDS
AGCATCCCTCCAACCATTCC+AGG 0.387944 4.1:+19561592 None:intergenic
CTGCCATTGCAATAGACTAT+TGG 0.388788 4.1:-19561264 MS.gene028441:CDS
AGGATGGAACAGAGTGGCCT+TGG 0.398321 4.1:-19562432 MS.gene028441:CDS
CTCTACGCCGATGGCGGAAA+CGG 0.400110 4.1:-19562634 MS.gene028441:CDS
AATGTATAGCTTCTTCTTCA+AGG 0.401405 4.1:+19561344 None:intergenic
ATTTCTGGTTCTTGCTGTAC+AGG 0.408480 4.1:-19561437 MS.gene028441:CDS
GGGGTGAAGGAAAGTGGGAT+TGG 0.409237 4.1:-19560467 MS.gene028441:CDS
TCACAACCGCCGAACTTTGA+CGG 0.414769 4.1:+19562692 None:intergenic
GTGAAGGAAAGTGGGATTGG+AGG 0.424676 4.1:-19560464 MS.gene028441:CDS
TTCCTACACTGAGTATTTGA+AGG 0.429843 4.1:-19561323 MS.gene028441:CDS
TCATTCGCGGCGGCGGAAAT+CGG 0.438546 4.1:-19562667 MS.gene028441:CDS
GAAACAGTTGCAGCTGTCCC+TGG 0.444443 4.1:-19561610 MS.gene028441:CDS
AACCACGTTATTCTTTGTTC+CGG 0.444667 4.1:+19562498 None:intergenic
TCTTTCAATTTGGCATCCTT+GGG 0.445531 4.1:+19561235 None:intergenic
CGCTGATGAGGCTCACCATC+GGG 0.449836 4.1:-19561194 MS.gene028441:CDS
ATGATGCTTATTCAGATCAA+TGG 0.451779 4.1:+19562256 None:intergenic
CCATCCTCTCTCATAATCTT+CGG 0.453617 4.1:+19562448 None:intergenic
AAGGTGGCTCATAGAGTTGT+TGG 0.454036 4.1:-19561370 MS.gene028441:CDS
ATGCAAAAGGATGCTAATAT+GGG 0.455233 4.1:-19560516 MS.gene028441:CDS
GCCTCCGTCTCTTCCGCTGA+TGG 0.455263 4.1:+19562559 None:intergenic
GTGGCCTTGGAACTGCTTCA+TGG 0.462385 4.1:-19562419 MS.gene028441:intron
GAGGATGCACCTAATGACTA+TGG 0.466754 4.1:-19561491 MS.gene028441:CDS
GAACCCTCCGTTTCCGCCAT+CGG 0.466915 4.1:+19562627 None:intergenic
GAATTCTAACCGTCAAAGTT+CGG 0.475373 4.1:-19562701 MS.gene028441:CDS
ACTTTATCCAGAAAATTCTT+CGG 0.476030 4.1:+19562230 None:intergenic
ATTCCAAATAACAATGCAAA+AGG 0.476703 4.1:-19560529 MS.gene028441:CDS
ATTTCAGCATAGTGGTGGTT+GGG 0.477652 4.1:-19561545 MS.gene028441:CDS
GTGATCCATGGGTAGGGCAA+GGG 0.484969 4.1:-19560581 MS.gene028441:CDS
TAGAACTTGTGAAGCCGAAA+TGG 0.485630 4.1:-19561468 MS.gene028441:CDS
GCATTCAGCATTGTGTTACA+TGG 0.485894 4.1:-19562749 MS.gene028441:CDS
TGTGAGGTCATTCGCGGCGG+CGG 0.486795 4.1:-19562674 MS.gene028441:CDS
CCATTGCAATAGACTATTGG+AGG 0.495126 4.1:-19561261 MS.gene028441:CDS
AGAGAGGGGTGAAGGAAAGT+GGG 0.497572 4.1:-19560472 MS.gene028441:CDS
CATTCACCAACTCCTTCCAA+TGG 0.507958 4.1:+19560430 None:intergenic
GCTGGTTCTCTAGTAAGTGC+AGG 0.510165 4.1:-19560641 MS.gene028441:CDS
AATTTCAGCATAGTGGTGGT+TGG 0.511730 4.1:-19561546 MS.gene028441:CDS
GCTGTCCCTGGAATGGTTGG+AGG 0.515427 4.1:-19561598 MS.gene028441:CDS
TCTATTGCAATGGCAGGAGC+AGG 0.517572 4.1:+19561271 None:intergenic
TGATCCATGGGTAGGGCAAG+GGG 0.521207 4.1:-19560580 MS.gene028441:CDS
CAATAGTCTATTGCAATGGC+AGG 0.522929 4.1:+19561265 None:intergenic
TTTCTGGTTCTTGCTGTACA+GGG 0.524259 4.1:-19561436 MS.gene028441:CDS
GGCGGTTGTGAGGTCATTCG+CGG 0.528832 4.1:-19562680 MS.gene028441:CDS
GACGGAGAAGAACGAGAAGA+AGG 0.529053 4.1:-19562530 MS.gene028441:CDS
ATCTCCCCTTGCCCTACCCA+TGG 0.531395 4.1:+19560576 None:intergenic
CCGAAGATTATGAGAGAGGA+TGG 0.536815 4.1:-19562448 MS.gene028441:CDS
AGGTGGCTCATAGAGTTGTT+GGG 0.545630 4.1:-19561369 MS.gene028441:CDS
AGTAAGTGCAGGGAAGTAGT+GGG 0.548006 4.1:-19560630 MS.gene028441:CDS
TAGTAAGTGCAGGGAAGTAG+TGG 0.550324 4.1:-19560631 MS.gene028441:CDS
GTCAATCCATTGGAAGGAGT+TGG 0.551731 4.1:-19560436 MS.gene028441:CDS
ACGCCGATGGCGGAAACGGA+GGG 0.558279 4.1:-19562630 MS.gene028441:CDS
GCAGAGCTTTGATCGGTGGC+CGG 0.558864 4.1:-19562723 MS.gene028441:CDS
AGTGATCCATGGGTAGGGCA+AGG 0.562262 4.1:-19560582 MS.gene028441:CDS
AACAGTCATTCGCGCTGATG+AGG 0.563488 4.1:-19561206 MS.gene028441:CDS
TACGCCGATGGCGGAAACGG+AGG 0.565606 4.1:-19562631 MS.gene028441:CDS
TTTGGAGTGATCCATGGGTA+GGG 0.567857 4.1:-19560587 MS.gene028441:CDS
ACAAGTTCAGAGAGGGGTGA+AGG 0.567967 4.1:-19560480 MS.gene028441:CDS
GGAGGAGAAAGTCAATCCAT+TGG 0.568099 4.1:-19560446 MS.gene028441:CDS
GTGGTTGTGTCGAGTTATTG+GGG 0.571030 4.1:-19562481 MS.gene028441:CDS
GCAGCTGTCCCTGGAATGGT+TGG 0.572427 4.1:-19561601 MS.gene028441:CDS
CAGAGGCATCTCTACGCCGA+TGG 0.573886 4.1:-19562643 MS.gene028441:CDS
TTGAAGAAGCAGAGAATGAG+AGG 0.575067 4.1:-19561510 MS.gene028441:CDS
GTGTGGAACAAGTTCAGAGA+GGG 0.584226 4.1:-19560487 MS.gene028441:CDS
TCTTCCGCTGATGGCTTCGA+CGG 0.586594 4.1:+19562568 None:intergenic
GCCATCAGCGGAAGAGACGG+AGG 0.587726 4.1:-19562560 MS.gene028441:CDS
TATTTGAAGGACATTGATAG+TGG 0.587742 4.1:-19561310 MS.gene028441:CDS
TTTGATTGATAAGTCTCCCA+TGG 0.588432 4.1:+19562284 None:intergenic
ATGGCTCGCAGAGCTTTGAT+CGG 0.589072 4.1:-19562730 MS.gene028441:CDS
GAAGCCATCAGCGGAAGAGA+CGG 0.589166 4.1:-19562563 MS.gene028441:CDS
GCGCTGATGAGGCTCACCAT+CGG 0.590135 4.1:-19561195 MS.gene028441:CDS
CGAAAATTTCAGCATAGTGG+TGG 0.590958 4.1:-19561550 MS.gene028441:CDS
CTGTTTCGAGCATCATTGCA+CGG 0.591594 4.1:+19561626 None:intergenic
GTCAAAGTTCGGCGGTTGTG+AGG 0.592006 4.1:-19562690 MS.gene028441:CDS
TTACATACTTTCCCCAAAGG+TGG 0.592089 4.1:-19561386 MS.gene028441:CDS
CTGTCCCTGGAATGGTTGGA+GGG 0.593126 4.1:-19561597 MS.gene028441:CDS
CTCCGAAAATTTCAGCATAG+TGG 0.594257 4.1:-19561553 MS.gene028441:CDS
CGGCGGCGGAAATCGGCCAG+AGG 0.595135 4.1:-19562660 MS.gene028441:CDS
ACGAGGAGAGTCAAACAAGC+TGG 0.595319 4.1:-19560659 MS.gene028441:CDS
AACTCTATGAGCCACCTTTG+GGG 0.595501 4.1:+19561375 None:intergenic
TGCAAAAGGATGCTAATATG+GGG 0.599946 4.1:-19560515 MS.gene028441:CDS
ACTTTACATACTTTCCCCAA+AGG 0.601341 4.1:-19561389 MS.gene028441:CDS
GAGAAAGTCAATCCATTGGA+AGG 0.601637 4.1:-19560442 MS.gene028441:CDS
CATCGGCGTAGAGATGCCTC+TGG 0.604415 4.1:+19562644 None:intergenic
AGGCATCTCTACGCCGATGG+CGG 0.606114 4.1:-19562640 MS.gene028441:CDS
AGAGACGGAGGCGAAATCGA+CGG 0.606512 4.1:-19562548 MS.gene028441:CDS
CTGGTTCTCTAGTAAGTGCA+GGG 0.611763 4.1:-19560640 MS.gene028441:CDS
GAGGCCGAAGATTATGAGAG+AGG 0.612635 4.1:-19562452 MS.gene028441:CDS
TAAGTGCAGGGAAGTAGTGG+GGG 0.613519 4.1:-19560628 MS.gene028441:CDS
TGCGCCGTCGAAGCCATCAG+CGG 0.613702 4.1:-19562572 MS.gene028441:CDS
GGAGAAGAACGAGAAGAAGG+AGG 0.617945 4.1:-19562527 MS.gene028441:CDS
GTTACCATGAAGCAGTTCCA+AGG 0.624690 4.1:+19562415 None:intergenic
GCTCGCAGAGCTTTGATCGG+TGG 0.625356 4.1:-19562727 MS.gene028441:CDS
AGTTGCAGCTGTCCCTGGAA+TGG 0.626357 4.1:-19561605 MS.gene028441:CDS
AGACTATTGGAGGCTTCCCA+AGG 0.628882 4.1:-19561251 MS.gene028441:CDS
GCATCCCTCCAACCATTCCA+GGG 0.636143 4.1:+19561593 None:intergenic
GAACACTCACTGAAGCGAAG+TGG 0.637444 4.1:+19561164 None:intergenic
GTCCTTCAAATACTCAGTGT+AGG 0.637701 4.1:+19561321 None:intergenic
CCTCCAATAGTCTATTGCAA+TGG 0.640373 4.1:+19561261 None:intergenic
GTAAGTGCAGGGAAGTAGTG+GGG 0.651085 4.1:-19560629 MS.gene028441:CDS
TTCTAACCGTCAAAGTTCGG+CGG 0.651224 4.1:-19562698 MS.gene028441:CDS
TGGTTGTGTCGAGTTATTGG+GGG 0.651952 4.1:-19562480 MS.gene028441:CDS
CGAAGTGGTTCACATCCCGA+TGG 0.653019 4.1:+19561179 None:intergenic
CGTGTGGAACAAGTTCAGAG+AGG 0.691774 4.1:-19560488 MS.gene028441:CDS
GCAAAAGGATGCTAATATGG+GGG 0.693941 4.1:-19560514 MS.gene028441:CDS
TGTGGAACAAGTTCAGAGAG+GGG 0.706013 4.1:-19560486 MS.gene028441:CDS
GGTTGTGAGGTCATTCGCGG+CGG 0.720769 4.1:-19562677 MS.gene028441:CDS
TGAGAGAGGATGGAACAGAG+TGG 0.750950 4.1:-19562438 MS.gene028441:CDS
TTCCGGAACAAAGAATAACG+TGG 0.755903 4.1:-19562500 MS.gene028441:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATATTTTATTTTATTCC+TGG - chr4.1:19561329-19561348 MS.gene028441:CDS 10.0%
!! TATCATCTTACATTTATTTA+CGG - chr4.1:19562075-19562094 MS.gene028441:intron 15.0%
!!! TAATTTAGTCAATTTTTTAC+CGG - chr4.1:19561128-19561147 MS.gene028441:intron 15.0%
!! ACATGAAAACTGTAAAATTT+AGG - chr4.1:19562184-19562203 MS.gene028441:CDS 20.0%
!! ATAAATGTAAGATGATATGT+TGG + chr4.1:19562072-19562091 None:intergenic 20.0%
!! ATAAGTAAAGCTTCATTATT+TGG + chr4.1:19562436-19562455 None:intergenic 20.0%
!! TAAGTAAAGCTTCATTATTT+GGG + chr4.1:19562435-19562454 None:intergenic 20.0%
!! TTTGCTACATATGAATAAAA+GGG - chr4.1:19561216-19561235 MS.gene028441:CDS 20.0%
!!! AAAACTGTAAAATTTAGGAT+TGG - chr4.1:19562189-19562208 MS.gene028441:CDS 20.0%
!!! TAAAATTTAGGATTGGTATA+AGG - chr4.1:19562196-19562215 MS.gene028441:CDS 20.0%
!!! TTACTTATATCCAACTTTTA+GGG - chr4.1:19562448-19562467 MS.gene028441:CDS 20.0%
!!! TTTACTTATATCCAACTTTT+AGG - chr4.1:19562447-19562466 MS.gene028441:CDS 20.0%
! AACTTGTGATCTCAATATAT+TGG - chr4.1:19562137-19562156 MS.gene028441:intron 25.0%
! AATTCATGGTTTCTATAAAG+TGG - chr4.1:19560812-19560831 MS.gene028441:intron 25.0%
! ACTTTATCCAGAAAATTCTT+CGG + chr4.1:19560931-19560950 None:intergenic 25.0%
! ATTCCAAATAACAATGCAAA+AGG - chr4.1:19562629-19562648 MS.gene028441:CDS 25.0%
! ATTGACTAAATTACATGTGT+CGG + chr4.1:19561121-19561140 None:intergenic 25.0%
! ATTGTATGATCCATAACAAA+AGG - chr4.1:19561042-19561061 MS.gene028441:intron 25.0%
! GTATAAGGTAATATACACAA+AGG - chr4.1:19562211-19562230 MS.gene028441:CDS 25.0%
! TACAGAGAAATTCTTCAATT+CGG + chr4.1:19560775-19560794 None:intergenic 25.0%
! TGTTATGACATCTTTCAATT+TGG + chr4.1:19561936-19561955 None:intergenic 25.0%
! TTTATGTGCTCTTAAGAAAT+TGG - chr4.1:19561246-19561265 MS.gene028441:CDS 25.0%
!! GTTTGCTACATATGAATAAA+AGG - chr4.1:19561215-19561234 MS.gene028441:CDS 25.0%
!! TTTGTTATGGATCATACAAT+AGG + chr4.1:19561042-19561061 None:intergenic 25.0%
!!! ATTGTTTTTTCGCTAATTCA+TGG - chr4.1:19560798-19560817 MS.gene028441:intron 25.0%
!!! GTAAGAAATTTTAACCACTT+GGG - chr4.1:19562473-19562492 MS.gene028441:CDS 25.0%
!!! TTTTGTTATGATGTTCTTCA+TGG - chr4.1:19561444-19561463 MS.gene028441:CDS 25.0%
AATGCAAAAGGATGCTAATA+TGG - chr4.1:19562641-19562660 MS.gene028441:CDS 30.0%
AATGTATAGCTTCTTCTTCA+AGG + chr4.1:19561817-19561836 None:intergenic 30.0%
ACCTTAAAAAACACATCAGT+GGG + chr4.1:19560985-19561004 None:intergenic 30.0%
AGAAATCTCTCATACCATTT+CGG + chr4.1:19561707-19561726 None:intergenic 30.0%
ATGATGCTTATTCAGATCAA+TGG + chr4.1:19560905-19560924 None:intergenic 30.0%
ATGCAAAAGGATGCTAATAT+GGG - chr4.1:19562642-19562661 MS.gene028441:CDS 30.0%
CATACTATACTAGATATTGC+AGG - chr4.1:19561409-19561428 MS.gene028441:CDS 30.0%
GTTGCTATACACTTTACAAA+GGG - chr4.1:19562320-19562339 MS.gene028441:intron 30.0%
TATCAATGATGCATATTTCC+AGG + chr4.1:19561350-19561369 None:intergenic 30.0%
TATTTGAAGGACATTGATAG+TGG - chr4.1:19561848-19561867 MS.gene028441:intron 30.0%
TGTTGCTATACACTTTACAA+AGG - chr4.1:19562319-19562338 MS.gene028441:intron 30.0%
! AACGTCTCTGAAAATATTCA+TGG + chr4.1:19561505-19561524 None:intergenic 30.0%
! AGAAGTATATGACTACCATA+AGG - chr4.1:19562347-19562366 MS.gene028441:intron 30.0%
! GAATATTTTCAGAGACGTTA+TGG - chr4.1:19561506-19561525 MS.gene028441:CDS 30.0%
! TCTTCTCTTTCCTTTTGTTA+TGG + chr4.1:19561055-19561074 None:intergenic 30.0%
!! CATCCTTTTGCATTGTTATT+TGG + chr4.1:19562635-19562654 None:intergenic 30.0%
!! GGTAAGAAATTTTAACCACT+TGG - chr4.1:19562472-19562491 MS.gene028441:CDS 30.0%
AACCACGTTATTCTTTGTTC+CGG + chr4.1:19560663-19560682 None:intergenic 35.0%
AACTTTGACGGTTAGAATTC+CGG + chr4.1:19560457-19560476 None:intergenic 35.0%
AAGTGCATGAGAGGAAATTA+GGG + chr4.1:19562270-19562289 None:intergenic 35.0%
ACACTACACTTTCGAATTCT+AGG + chr4.1:19562293-19562312 None:intergenic 35.0%
ACTTTACATACTTTCCCCAA+AGG - chr4.1:19561769-19561788 MS.gene028441:intron 35.0%
ATCTTTCAATTTGGCATCCT+TGG + chr4.1:19561927-19561946 None:intergenic 35.0%
ATTGAGATCACAAGTTCAAC+AGG + chr4.1:19562133-19562152 None:intergenic 35.0%
CAAGTTCTACCATAGTCATT+AGG + chr4.1:19561679-19561698 None:intergenic 35.0%
CACCTTAAAAAACACATCAG+TGG + chr4.1:19560986-19561005 None:intergenic 35.0%
GAAATGGTATGAGAGATTTC+TGG - chr4.1:19561706-19561725 MS.gene028441:intron 35.0%
GAATTCTAACCGTCAAAGTT+CGG - chr4.1:19560457-19560476 MS.gene028441:CDS 35.0%
GACAACAAATGTATGCCTTA+TGG + chr4.1:19562365-19562384 None:intergenic 35.0%
TCTTTCAATTTGGCATCCTT+GGG + chr4.1:19561926-19561945 None:intergenic 35.0%
TGCAAAAGGATGCTAATATG+GGG - chr4.1:19562643-19562662 MS.gene028441:CDS 35.0%
TTCCTACACTGAGTATTTGA+AGG - chr4.1:19561835-19561854 MS.gene028441:intron 35.0%
TTTCTTACCTCCCTAAAAGT+TGG + chr4.1:19562461-19562480 None:intergenic 35.0%
TTTGATTGATAAGTCTCCCA+TGG + chr4.1:19560877-19560896 None:intergenic 35.0%
! AAATTACATGTGTCGGTGTA+AGG + chr4.1:19561114-19561133 None:intergenic 35.0%
! AGAATTCGAAAGTGTAGTGT+AGG - chr4.1:19562293-19562312 MS.gene028441:intron 35.0%
! CACCACTATGCTGAAATTTT+CGG + chr4.1:19561610-19561629 None:intergenic 35.0%
!! AAGGGAGTGATATGTCATTT+TGG - chr4.1:19562553-19562572 MS.gene028441:CDS 35.0%
!! AGAAATTTTAACCACTTGGG+AGG - chr4.1:19562476-19562495 MS.gene028441:CDS 35.0%
!! CTTATATCCAACTTTTAGGG+AGG - chr4.1:19562451-19562470 MS.gene028441:CDS 35.0%
!!! GATGTGTTTTTTAAGGTGTG+TGG - chr4.1:19560988-19561007 MS.gene028441:intron 35.0%
!!! TCCCACTGATGTGTTTTTTA+AGG - chr4.1:19560981-19561000 MS.gene028441:intron 35.0%
AATTAGGGGAAAATGCGATC+TGG + chr4.1:19562255-19562274 None:intergenic 40.0%
AATTTCAGCATAGTGGTGGT+TGG - chr4.1:19561612-19561631 MS.gene028441:CDS 40.0%
AGTGCATGAGAGGAAATTAG+GGG + chr4.1:19562269-19562288 None:intergenic 40.0%
ATTTCAGCATAGTGGTGGTT+GGG - chr4.1:19561613-19561632 MS.gene028441:CDS 40.0%
CAATAGTCTATTGCAATGGC+AGG + chr4.1:19561896-19561915 None:intergenic 40.0%
CCATCCTCTCTCATAATCTT+CGG + chr4.1:19560713-19560732 None:intergenic 40.0%
CCATTGCAATAGACTATTGG+AGG - chr4.1:19561897-19561916 MS.gene028441:intron 40.0%
CCTCCAATAGTCTATTGCAA+TGG + chr4.1:19561900-19561919 None:intergenic 40.0%
CGAAAATTTCAGCATAGTGG+TGG - chr4.1:19561608-19561627 MS.gene028441:CDS 40.0%
CTCCGAAAATTTCAGCATAG+TGG - chr4.1:19561605-19561624 MS.gene028441:CDS 40.0%
CTGCCATTGCAATAGACTAT+TGG - chr4.1:19561894-19561913 MS.gene028441:intron 40.0%
GAAGTGCATGAGAGGAAATT+AGG + chr4.1:19562271-19562290 None:intergenic 40.0%
GAGAAAGTCAATCCATTGGA+AGG - chr4.1:19562716-19562735 MS.gene028441:CDS 40.0%
GCAAAAGGATGCTAATATGG+GGG - chr4.1:19562644-19562663 MS.gene028441:CDS 40.0%
GCATTCAGCATTGTGTTACA+TGG - chr4.1:19560409-19560428 MS.gene028441:CDS 40.0%
GCTATACACTTTACAAAGGG+CGG - chr4.1:19562323-19562342 MS.gene028441:intron 40.0%
GTCCTTCAAATACTCAGTGT+AGG + chr4.1:19561840-19561859 None:intergenic 40.0%
TAGAACTTGTGAAGCCGAAA+TGG - chr4.1:19561690-19561709 MS.gene028441:intron 40.0%
TTACATACTTTCCCCAAAGG+TGG - chr4.1:19561772-19561791 MS.gene028441:intron 40.0%
TTCCGGAACAAAGAATAACG+TGG - chr4.1:19560658-19560677 MS.gene028441:CDS 40.0%
TTCTGGATAAAGTCGCTTAC+AGG - chr4.1:19560938-19560957 MS.gene028441:intron 40.0%
TTGAAGAAGCAGAGAATGAG+AGG - chr4.1:19561648-19561667 MS.gene028441:intron 40.0%
! AATTCTAGGAAGTGCATGAG+AGG + chr4.1:19562279-19562298 None:intergenic 40.0%
! GAAATTTTCGGAGTGACTTG+AGG + chr4.1:19561598-19561617 None:intergenic 40.0%
! TCATGAGCCGAAGAATTTTC+TGG - chr4.1:19560921-19560940 MS.gene028441:intron 40.0%
! TCGTTGTTGATTGTAGCCAT+GGG - chr4.1:19560858-19560877 MS.gene028441:intron 40.0%
! TTCGTTGTTGATTGTAGCCA+TGG - chr4.1:19560857-19560876 MS.gene028441:intron 40.0%
!! ATTTCTGGTTCTTGCTGTAC+AGG - chr4.1:19561721-19561740 MS.gene028441:intron 40.0%
!! TTTCTGGTTCTTGCTGTACA+GGG - chr4.1:19561722-19561741 MS.gene028441:intron 40.0%
!!! GTCATTTTGGAGTGATCCAT+GGG - chr4.1:19562566-19562585 MS.gene028441:CDS 40.0%
!!! TGTCATTTTGGAGTGATCCA+TGG - chr4.1:19562565-19562584 MS.gene028441:CDS 40.0%
AAAGGATGCTAATATGGGGG+AGG - chr4.1:19562647-19562666 MS.gene028441:CDS 45.0%
AACTCTATGAGCCACCTTTG+GGG + chr4.1:19561786-19561805 None:intergenic 45.0%
AAGGTGGCTCATAGAGTTGT+TGG - chr4.1:19561788-19561807 MS.gene028441:intron 45.0%
ACAACTCTATGAGCCACCTT+TGG + chr4.1:19561788-19561807 None:intergenic 45.0%
ACGTGGTTGTGTCGAGTTAT+TGG - chr4.1:19560675-19560694 MS.gene028441:intron 45.0%
AGGTGGCTCATAGAGTTGTT+GGG - chr4.1:19561789-19561808 MS.gene028441:intron 45.0%
AGTAAGTGCAGGGAAGTAGT+GGG - chr4.1:19562528-19562547 MS.gene028441:CDS 45.0%
CAACTCTATGAGCCACCTTT+GGG + chr4.1:19561787-19561806 None:intergenic 45.0%
CATTCACCAACTCCTTCCAA+TGG + chr4.1:19562731-19562750 None:intergenic 45.0%
CCGAAGATTATGAGAGAGGA+TGG - chr4.1:19560710-19560729 MS.gene028441:intron 45.0%
CGTGGTTGTGTCGAGTTATT+GGG - chr4.1:19560676-19560695 MS.gene028441:intron 45.0%
CTGTTTCGAGCATCATTGCA+CGG + chr4.1:19561535-19561554 None:intergenic 45.0%
GACACGACACAACATTGACA+CGG + chr4.1:19561165-19561184 None:intergenic 45.0%
GAGGATGCACCTAATGACTA+TGG - chr4.1:19561667-19561686 MS.gene028441:intron 45.0%
GGAGGAGAAAGTCAATCCAT+TGG - chr4.1:19562712-19562731 MS.gene028441:CDS 45.0%
GTCAATCCATTGGAAGGAGT+TGG - chr4.1:19562722-19562741 MS.gene028441:CDS 45.0%
GTCGTGTCTAGTGTTCATGT+TGG - chr4.1:19561177-19561196 MS.gene028441:CDS 45.0%
GTGGTTGTGTCGAGTTATTG+GGG - chr4.1:19560677-19560696 MS.gene028441:intron 45.0%
GTGTGGAACAAGTTCAGAGA+GGG - chr4.1:19562671-19562690 MS.gene028441:CDS 45.0%
GTTACCATGAAGCAGTTCCA+AGG + chr4.1:19560746-19560765 None:intergenic 45.0%
TAGTAAGTGCAGGGAAGTAG+TGG - chr4.1:19562527-19562546 MS.gene028441:CDS 45.0%
TGGTTGTGTCGAGTTATTGG+GGG - chr4.1:19560678-19560697 MS.gene028441:intron 45.0%
TGTGGAACAAGTTCAGAGAG+GGG - chr4.1:19562672-19562691 MS.gene028441:CDS 45.0%
TTCTAACCGTCAAAGTTCGG+CGG - chr4.1:19560460-19560479 MS.gene028441:CDS 45.0%
! CTGGTTCTCTAGTAAGTGCA+GGG - chr4.1:19562518-19562537 MS.gene028441:CDS 45.0%
! GAAACGGAGGGTTCTTTTAC+TGG - chr4.1:19560540-19560559 MS.gene028441:CDS 45.0%
! GAGGGTTCTTTTACTGGAAG+AGG - chr4.1:19560546-19560565 MS.gene028441:CDS 45.0%
! TTTGGAGTGATCCATGGGTA+GGG - chr4.1:19562571-19562590 MS.gene028441:CDS 45.0%
!!! TTTTGGAGTGATCCATGGGT+AGG - chr4.1:19562570-19562589 MS.gene028441:CDS 45.0%
ACAAGTTCAGAGAGGGGTGA+AGG - chr4.1:19562678-19562697 MS.gene028441:CDS 50.0%
ACGAGGAGAGTCAAACAAGC+TGG - chr4.1:19562499-19562518 MS.gene028441:CDS 50.0%
AGACTATTGGAGGCTTCCCA+AGG - chr4.1:19561907-19561926 MS.gene028441:intron 50.0%
AGAGAGGGGTGAAGGAAAGT+GGG - chr4.1:19562686-19562705 MS.gene028441:CDS 50.0%
CGAGTTATTGGGGGATTTCG+AGG - chr4.1:19560687-19560706 MS.gene028441:intron 50.0%
CGTGTGGAACAAGTTCAGAG+AGG - chr4.1:19562670-19562689 MS.gene028441:CDS 50.0%
GAACACTCACTGAAGCGAAG+TGG + chr4.1:19561997-19562016 None:intergenic 50.0%
GACGGAGAAGAACGAGAAGA+AGG - chr4.1:19560628-19560647 MS.gene028441:CDS 50.0%
GAGAAGAAGGAGGAGAGTTC+CGG - chr4.1:19560641-19560660 MS.gene028441:CDS 50.0%
GAGGCCGAAGATTATGAGAG+AGG - chr4.1:19560706-19560725 MS.gene028441:intron 50.0%
GGAGAAGAACGAGAAGAAGG+AGG - chr4.1:19560631-19560650 MS.gene028441:CDS 50.0%
GTAAGTGCAGGGAAGTAGTG+GGG - chr4.1:19562529-19562548 MS.gene028441:CDS 50.0%
GTGAAGGAAAGTGGGATTGG+AGG - chr4.1:19562694-19562713 MS.gene028441:CDS 50.0%
TAAGTGCAGGGAAGTAGTGG+GGG - chr4.1:19562530-19562549 MS.gene028441:CDS 50.0%
TAAGTGTTCTCTGTCGCACG+AGG - chr4.1:19561077-19561096 MS.gene028441:intron 50.0%
TCACAACCGCCGAACTTTGA+CGG + chr4.1:19560469-19560488 None:intergenic 50.0%
TCTATTGCAATGGCAGGAGC+AGG + chr4.1:19561890-19561909 None:intergenic 50.0%
TGAGAGAGGATGGAACAGAG+TGG - chr4.1:19560720-19560739 MS.gene028441:intron 50.0%
TTTAACCACTTGGGAGGACG+AGG - chr4.1:19562482-19562501 MS.gene028441:CDS 50.0%
! AACAGTCATTCGCGCTGATG+AGG - chr4.1:19561952-19561971 MS.gene028441:intron 50.0%
! ATGGCTCGCAGAGCTTTGAT+CGG - chr4.1:19560428-19560447 MS.gene028441:CDS 50.0%
! GCTGGTTCTCTAGTAAGTGC+AGG - chr4.1:19562517-19562536 MS.gene028441:CDS 50.0%
AGAGACGGAGGCGAAATCGA+CGG - chr4.1:19560610-19560629 MS.gene028441:CDS 55.0%
AGCATCCCTCCAACCATTCC+AGG + chr4.1:19561569-19561588 None:intergenic 55.0%
AGGATGGAACAGAGTGGCCT+TGG - chr4.1:19560726-19560745 MS.gene028441:intron 55.0%
AGTGATCCATGGGTAGGGCA+AGG - chr4.1:19562576-19562595 MS.gene028441:CDS 55.0%
AGTTGCAGCTGTCCCTGGAA+TGG - chr4.1:19561553-19561572 MS.gene028441:CDS 55.0%
CAGAGAGGGGTGAAGGAAAG+TGG - chr4.1:19562685-19562704 MS.gene028441:CDS 55.0%
CGAAGTGGTTCACATCCCGA+TGG + chr4.1:19561982-19562001 None:intergenic 55.0%
CTGTCCCTGGAATGGTTGGA+GGG - chr4.1:19561561-19561580 MS.gene028441:CDS 55.0%
GAAACAGTTGCAGCTGTCCC+TGG - chr4.1:19561548-19561567 MS.gene028441:CDS 55.0%
GAAGCCATCAGCGGAAGAGA+CGG - chr4.1:19560595-19560614 MS.gene028441:CDS 55.0%
GCATCCCTCCAACCATTCCA+GGG + chr4.1:19561568-19561587 None:intergenic 55.0%
GGGGTGAAGGAAAGTGGGAT+TGG - chr4.1:19562691-19562710 MS.gene028441:CDS 55.0%
GTCAAAGTTCGGCGGTTGTG+AGG - chr4.1:19560468-19560487 MS.gene028441:CDS 55.0%
GTGATCCATGGGTAGGGCAA+GGG - chr4.1:19562577-19562596 MS.gene028441:CDS 55.0%
TCTTCCGCTGATGGCTTCGA+CGG + chr4.1:19560593-19560612 None:intergenic 55.0%
TGACACGGACACGATGACAC+CGG + chr4.1:19561150-19561169 None:intergenic 55.0%
TGATCCATGGGTAGGGCAAG+GGG - chr4.1:19562578-19562597 MS.gene028441:CDS 55.0%
! GTGGCCTTGGAACTGCTTCA+TGG - chr4.1:19560739-19560758 MS.gene028441:intron 55.0%
ACTCTCCTCGTCCTCCCAAG+TGG + chr4.1:19562490-19562509 None:intergenic 60.0%
AGGCATCTCTACGCCGATGG+CGG - chr4.1:19560518-19560537 MS.gene028441:CDS 60.0%
ATCTCCCCTTGCCCTACCCA+TGG + chr4.1:19562585-19562604 None:intergenic 60.0%
CATCGGCGTAGAGATGCCTC+TGG + chr4.1:19560517-19560536 None:intergenic 60.0%
CGCTGATGAGGCTCACCATC+GGG - chr4.1:19561964-19561983 MS.gene028441:intron 60.0%
GAACCCTCCGTTTCCGCCAT+CGG + chr4.1:19560534-19560553 None:intergenic 60.0%
GCAGCTGTCCCTGGAATGGT+TGG - chr4.1:19561557-19561576 MS.gene028441:CDS 60.0%
GCTGTCCCTGGAATGGTTGG+AGG - chr4.1:19561560-19561579 MS.gene028441:CDS 60.0%
GGCGGTTGTGAGGTCATTCG+CGG - chr4.1:19560478-19560497 MS.gene028441:CDS 60.0%
GGTTGTGAGGTCATTCGCGG+CGG - chr4.1:19560481-19560500 MS.gene028441:CDS 60.0%
TCATTCGCGGCGGCGGAAAT+CGG - chr4.1:19560491-19560510 MS.gene028441:CDS 60.0%
TCTGTCGCACGAGGCGTGTA+TGG - chr4.1:19561086-19561105 MS.gene028441:intron 60.0%
! GCAGAGCTTTGATCGGTGGC+CGG - chr4.1:19560435-19560454 MS.gene028441:CDS 60.0%
! GCAGGGAAGTAGTGGGGGAA+GGG - chr4.1:19562535-19562554 MS.gene028441:CDS 60.0%
! GCGCTGATGAGGCTCACCAT+CGG - chr4.1:19561963-19561982 MS.gene028441:intron 60.0%
! GCTAATATGGGGGAGGCGTG+TGG - chr4.1:19562654-19562673 MS.gene028441:CDS 60.0%
! GCTCGCAGAGCTTTGATCGG+TGG - chr4.1:19560431-19560450 MS.gene028441:CDS 60.0%
! TGCAGGGAAGTAGTGGGGGA+AGG - chr4.1:19562534-19562553 MS.gene028441:CDS 60.0%
!! CAGAGGCATCTCTACGCCGA+TGG - chr4.1:19560515-19560534 MS.gene028441:CDS 60.0%
!! CTCTACGCCGATGGCGGAAA+CGG - chr4.1:19560524-19560543 MS.gene028441:CDS 60.0%
GCCATCAGCGGAAGAGACGG+AGG - chr4.1:19560598-19560617 MS.gene028441:CDS 65.0%
GCCTCCGTCTCTTCCGCTGA+TGG + chr4.1:19560602-19560621 None:intergenic 65.0%
TGCGCCGTCGAAGCCATCAG+CGG - chr4.1:19560586-19560605 MS.gene028441:CDS 65.0%
TGTGAGGTCATTCGCGGCGG+CGG - chr4.1:19560484-19560503 MS.gene028441:CDS 65.0%
!! ACGCCGATGGCGGAAACGGA+GGG - chr4.1:19560528-19560547 MS.gene028441:CDS 65.0%
!! TACGCCGATGGCGGAAACGG+AGG - chr4.1:19560527-19560546 MS.gene028441:CDS 65.0%
CGGCGGCGGAAATCGGCCAG+AGG - chr4.1:19560498-19560517 MS.gene028441:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 19560404 19562776 19560404 ID=MS.gene028441
chr4.1 mRNA 19560404 19562776 19560404 ID=MS.gene028441.t1;Parent=MS.gene028441
chr4.1 exon 19562420 19562776 19562420 ID=MS.gene028441.t1.exon1;Parent=MS.gene028441.t1
chr4.1 CDS 19562420 19562776 19562420 ID=cds.MS.gene028441.t1;Parent=MS.gene028441.t1
chr4.1 exon 19562178 19562306 19562178 ID=MS.gene028441.t1.exon2;Parent=MS.gene028441.t1
chr4.1 CDS 19562178 19562306 19562178 ID=cds.MS.gene028441.t1;Parent=MS.gene028441.t1
chr4.1 exon 19561174 19561662 19561174 ID=MS.gene028441.t1.exon3;Parent=MS.gene028441.t1
chr4.1 CDS 19561174 19561662 19561174 ID=cds.MS.gene028441.t1;Parent=MS.gene028441.t1
chr4.1 exon 19560404 19560682 19560404 ID=MS.gene028441.t1.exon4;Parent=MS.gene028441.t1
chr4.1 CDS 19560404 19560682 19560404 ID=cds.MS.gene028441.t1;Parent=MS.gene028441.t1
Gene Sequence

>MS.gene028441

ATGAAGCATTCAGCATTGTGTTACATGGCTCGCAGAGCTTTGATCGGTGGCCGGAATTCTAACCGTCAAAGTTCGGCGGTTGTGAGGTCATTCGCGGCGGCGGAAATCGGCCAGAGGCATCTCTACGCCGATGGCGGAAACGGAGGGTTCTTTTACTGGAAGAGGATGATGTCTTCGCAAGCTGCGCCGTCGAAGCCATCAGCGGAAGAGACGGAGGCGAAATCGACGGAGAAGAACGAGAAGAAGGAGGAGAGTTCCGGAACAAAGAATAACGTGGTTGTGTCGAGTTATTGGGGGATTTCGAGGCCGAAGATTATGAGAGAGGATGGAACAGAGTGGCCTTGGAACTGCTTCATGGTAACGATTTTCCGAATTGAAGAATTTCTCTGTATTCATTGTTTTTTCGCTAATTCATGGTTTCTATAAAGTGGAATTTGACTTATGAGACGAGATTTCGTTGTTGATTGTAGCCATGGGAGACTTATCAATCAAACGTTTCCATTGATCTGAATAAGCATCATGAGCCGAAGAATTTTCTGGATAAAGTCGCTTACAGGACAGTGAAGCTTCTCAGAATTCCCACTGATGTGTTTTTTAAGGTGTGTGGTATACTATAGCACTTGATTTTGAAATTTCCTATTGTATGATCCATAACAAAAGGAAAGAGAAGAAATAAGTGTTCTCTGTCGCACGAGGCGTGTATGGTGCCTTACACCGACACATGTAATTTAGTCAATTTTTTACCGGTGTCATCGTGTCCGTGTCAATGTTGTGTCGTGTCTAGTGTTCATGTTGGTGCTTCATACGAAGTGTTTGCTACATATGAATAAAAGGGTGCTATATTTATGTGCTCTTAAGAAATTGGTTTGTTTAGCGTCATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATTTTATTCCTGGAAATATGCATCATTGATATTGCATGTCATGTATTTGCTCTAAAAAAATATTTAGATGCATACTATACTAGATATTGCAGGTTCATCACAAAATTTTGTTATGATGTTCTTCATGGAAATTGTCTCAATTGTTATTCATAATAATAATAATCCATGAATATTTTCAGAGACGTTATGGTTGCCGTGCAATGATGCTCGAAACAGTTGCAGCTGTCCCTGGAATGGTTGGAGGGATGCTGTTGCACCTCAAGTCACTCCGAAAATTTCAGCATAGTGGTGGTTGGGTCAAAGCATTGCTTGAAGAAGCAGAGAATGAGAGGATGCACCTAATGACTATGGTAGAACTTGTGAAGCCGAAATGGTATGAGAGATTTCTGGTTCTTGCTGTACAGGGAGTTTTCTTCAATGCATTCTTTGTACTTTACATACTTTCCCCAAAGGTGGCTCATAGAGTTGTTGGGTACCTTGAAGAAGAAGCTATACATTCCTACACTGAGTATTTGAAGGACATTGATAGTGGTGCAATTGAAAATGTTCCTGCTCCTGCCATTGCAATAGACTATTGGAGGCTTCCCAAGGATGCCAAATTGAAAGATGTCATAACAGTCATTCGCGCTGATGAGGCTCACCATCGGGATGTGAACCACTTCGCTTCAGTGAGTGTTCTTTATCACTTGTGTAATGATATATTTTTCTTCATAAAACTATGCTTATTCTACCAACATATCATCTTACATTTATTTACGGTATATTTGTTTCTGTGCTTTTCATTTTGTTATCCTGTTGAACTTGTGATCTCAATATATTGGATCACTTTTTATTTGAAAAACAGAACATGAAAACTGTAAAATTTAGGATTGGTATAAGGTAATATACACAAAGGATAATAATCTGACAGAAACCAGATCGCATTTTCCCCTAATTTCCTCTCATGCACTTCCTAGAATTCGAAAGTGTAGTGTAGGTTGTGTTGCTATACACTTTACAAAGGGCGGCAGAAGTATATGACTACCATAAGGCATACATTTGTTGTCAAGTGTAGTCAAATAGATAGAAATCAGTAGAAATTTAATTAACTTCACCCAAATAATGAAGCTTTACTTATATCCAACTTTTAGGGAGGTAAGAAATTTTAACCACTTGGGAGGACGAGGAGAGTCAAACAAGCTGGTTCTCTAGTAAGTGCAGGGAAGTAGTGGGGGAAGGGAGTGATATGTCATTTTGGAGTGATCCATGGGTAGGGCAAGGGGAGATCTTGCAAGAGAAGTTTGCAACGTTATTCCAAATAACAATGCAAAAGGATGCTAATATGGGGGAGGCGTGTGGAACAAGTTCAGAGAGGGGTGAAGGAAAGTGGGATTGGAGGAGAAAGTCAATCCATTGGAAGGAGTTGGTGAATGAATGTATAAAATTTGATCAACCGTGA

Protein sequence

>MS.gene028441.t1

MKHSALCYMARRALIGGRNSNRQSSAVVRSFAAAEIGQRHLYADGGNGGFFYWKRMMSSQAAPSKPSAEETEAKSTEKNEKKEESSGTKNNVVVSSYWGISRPKIMREDGTEWPWNCFMPWETYQSNVSIDLNKHHEPKNFLDKVAYRTVKLLRIPTDVFFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWVKALLEEAENERMHLMTMVELVKPKWYERFLVLAVQGVFFNAFFVLYILSPKVAHRVVGYLEEEAIHSYTEYLKDIDSGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDEESQTSWFSSKCREVVGEGSDMSFWSDPWVGQGEILQEKFATLFQITMQKDANMGEACGTSSERGEGKWDWRRKSIHWKELVNECIKFDQP