Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84998.t1 | AGQ42774.1 | 99.7 | 336 | 0 | 1 | 1 | 336 | 1 | 335 | 1.20E-195 | 692.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84998.t1 | Q39219 | 79.7 | 311 | 60 | 1 | 29 | 336 | 44 | 354 | 2.4e-144 | 513.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84998.t1 | S5FNL5 | 99.7 | 336 | 0 | 1 | 1 | 336 | 1 | 335 | 8.6e-196 | 692.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060237 | MS.gene84998 | 0.814998 | 1.16E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84998 | MS.gene70368 | PPI |
| MS.gene028441 | MS.gene84998 | PPI |
| MS.gene90178 | MS.gene84998 | PPI |
| MS.gene35020 | MS.gene84998 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84998.t1 | MTR_5g026620 | 95.238 | 336 | 10 | 3 | 1 | 336 | 1 | 330 | 0.0 | 663 |
| MS.gene84998.t1 | MTR_5g026620 | 98.667 | 225 | 3 | 0 | 112 | 336 | 38 | 262 | 5.12e-169 | 471 |
| MS.gene84998.t1 | MTR_4g094222 | 75.600 | 250 | 61 | 0 | 87 | 336 | 96 | 345 | 1.94e-149 | 424 |
| MS.gene84998.t1 | MTR_5g070680 | 67.424 | 264 | 86 | 0 | 73 | 336 | 60 | 323 | 1.40e-139 | 398 |
| MS.gene84998.t1 | MTR_5g070870 | 66.667 | 273 | 88 | 1 | 67 | 336 | 52 | 324 | 2.73e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84998.t1 | AT3G22370 | 79.743 | 311 | 60 | 1 | 29 | 336 | 44 | 354 | 0.0 | 521 |
| MS.gene84998.t1 | AT3G22360 | 84.249 | 273 | 41 | 1 | 66 | 336 | 53 | 325 | 8.79e-176 | 490 |
| MS.gene84998.t1 | AT3G27620 | 82.528 | 269 | 39 | 1 | 76 | 336 | 61 | 329 | 8.15e-169 | 473 |
| MS.gene84998.t1 | AT1G32350 | 70.545 | 275 | 73 | 1 | 70 | 336 | 44 | 318 | 8.64e-154 | 434 |
| MS.gene84998.t1 | AT5G64210 | 68.293 | 287 | 80 | 3 | 52 | 336 | 76 | 353 | 1.09e-147 | 420 |
| MS.gene84998.t1 | AT1G32350 | 70.703 | 256 | 67 | 1 | 70 | 317 | 44 | 299 | 1.10e-142 | 405 |
Find 87 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATACGGTGTGCAAATT+TGG | 0.112313 | 5.2:+17633692 | None:intergenic |
| TTCCTCAAAACTCTACTTTA+AGG | 0.145682 | 5.2:-17633557 | MS.gene84998:CDS |
| TTCTGGACAAGATGGCTTAT+TGG | 0.228191 | 5.2:-17635069 | MS.gene84998:CDS |
| TTCTTCAATGCTTATTTCTT+AGG | 0.252741 | 5.2:-17633729 | MS.gene84998:CDS |
| ATTGGACTGTTAAGAGTCTT+AGG | 0.253076 | 5.2:-17635051 | MS.gene84998:CDS |
| ACAAAATAACCCCATTTGTT+TGG | 0.260248 | 5.2:+17635459 | None:intergenic |
| GGTGATAACAAAGATGAAAA+AGG | 0.272034 | 5.2:-17635318 | MS.gene84998:CDS |
| AAAAGGGATTACGAGTTATT+GGG | 0.318703 | 5.2:-17635301 | MS.gene84998:CDS |
| TCCTCCGTCGTCGTCGTCTC+AGG | 0.324683 | 5.2:-17635349 | MS.gene84998:CDS |
| TTTGCAAAGAAGGGTTTATT+AGG | 0.324829 | 5.2:-17635498 | MS.gene84998:CDS |
| AATGGAAATGGAATTGCTTC+AGG | 0.325465 | 5.2:-17635239 | MS.gene84998:CDS |
| CCACTTCCATGAAAGTCATT+AGG | 0.338652 | 5.2:+17633802 | None:intergenic |
| CGTAATGTTGTTTGCAAAGA+AGG | 0.348388 | 5.2:-17635508 | MS.gene84998:CDS |
| CAGCTATTGCTATTGACTAT+TGG | 0.356927 | 5.2:-17633584 | MS.gene84998:CDS |
| GGGATGTTGTCGAGGTTGTC+AGG | 0.363968 | 5.2:-17633536 | MS.gene84998:CDS |
| CATGCACCTAATGACTTTCA+TGG | 0.370912 | 5.2:-17633808 | MS.gene84998:CDS |
| ACCATACGGTGTGCAAATTT+GGG | 0.381391 | 5.2:+17633693 | None:intergenic |
| TCCTCAAAACTCTACTTTAA+GGG | 0.382420 | 5.2:-17633556 | MS.gene84998:CDS |
| CTTCTTTGCAAACAACATTA+CGG | 0.406181 | 5.2:+17635509 | None:intergenic |
| GATCAACAACCCCTCTTGTA+AGG | 0.418814 | 5.2:-17635434 | MS.gene84998:CDS |
| GGTTTATTAGGTGGTGAAGT+TGG | 0.424159 | 5.2:-17635486 | MS.gene84998:CDS |
| AGGGAGGCTGCTGCTCCAAT+TGG | 0.436968 | 5.2:-17633158 | MS.gene84998:CDS |
| AAGTTGGTGTTCCAAACAAA+TGG | 0.440248 | 5.2:-17635470 | MS.gene84998:CDS |
| AGTTGGTGTTCCAAACAAAT+GGG | 0.442514 | 5.2:-17635469 | MS.gene84998:CDS |
| AGCATTCCTCCTACCATGCC+AGG | 0.449536 | 5.2:+17633912 | None:intergenic |
| TCGTCGTCTCAGGGTGGTGC+TGG | 0.451393 | 5.2:-17635339 | MS.gene84998:CDS |
| ATTACCAAGGACGAGAGTTA+AGG | 0.452922 | 5.2:-17633178 | MS.gene84998:CDS |
| TTACCAAGGACGAGAGTTAA+GGG | 0.457110 | 5.2:-17633177 | MS.gene84998:CDS |
| CTGATGGTACTGAATGGAAA+TGG | 0.462655 | 5.2:-17635251 | MS.gene84998:CDS |
| TGCACTTGTCATAACTGTCC+AGG | 0.463520 | 5.2:-17633757 | MS.gene84998:CDS |
| CATTTCCATTCAGTACCATC+AGG | 0.464852 | 5.2:+17635252 | None:intergenic |
| ATCTTGTCCAGAAAAGTTGT+TGG | 0.465005 | 5.2:+17635079 | None:intergenic |
| GGTATCTAGTGATAACCAAT+TGG | 0.473206 | 5.2:+17633143 | None:intergenic |
| GAGACAGTAGCTGCTGTCCC+TGG | 0.491184 | 5.2:-17633930 | MS.gene84998:CDS |
| ATCCACCACTGTGCTCAAAT+CGG | 0.492142 | 5.2:+17633868 | None:intergenic |
| CCTCCGTCGTCGTCGTCTCA+GGG | 0.492164 | 5.2:-17635348 | MS.gene84998:CDS |
| GCTGCTGTCCCTGGCATGGT+AGG | 0.504751 | 5.2:-17633921 | MS.gene84998:CDS |
| TCAATAGCAATAGCTGGAGC+AGG | 0.506103 | 5.2:+17633591 | None:intergenic |
| ACCCAAATTTGCACACCGTA+TGG | 0.511597 | 5.2:-17633694 | MS.gene84998:CDS |
| CCTAATGACTTTCATGGAAG+TGG | 0.513462 | 5.2:-17633802 | MS.gene84998:CDS |
| ATGGAAATGGAATTGCTTCA+GGG | 0.515778 | 5.2:-17635238 | MS.gene84998:intron |
| TAATTGAAACAGAGAAGGTA+TGG | 0.517621 | 5.2:-17633972 | MS.gene84998:intron |
| CAAAACCTGATGGTACTGAA+TGG | 0.518207 | 5.2:-17635257 | MS.gene84998:CDS |
| TACTTTAAGGGATGTTGTCG+AGG | 0.527952 | 5.2:-17633544 | MS.gene84998:CDS |
| CCTCCCTTAACTCTCGTCCT+TGG | 0.532033 | 5.2:+17633174 | None:intergenic |
| GTAATGTTGTTTGCAAAGAA+GGG | 0.540746 | 5.2:-17635507 | MS.gene84998:CDS |
| GGATGTTGTCGAGGTTGTCA+GGG | 0.547504 | 5.2:-17633535 | MS.gene84998:CDS |
| GCAAAGAAGGGTTTATTAGG+TGG | 0.547710 | 5.2:-17635495 | MS.gene84998:CDS |
| AAAGGGATTACGAGTTATTG+GGG | 0.549336 | 5.2:-17635300 | MS.gene84998:CDS |
| TGCTAATCTGTCAGATCAGA+AGG | 0.555356 | 5.2:-17635394 | MS.gene84998:CDS |
| GCTGTCCCTGGCATGGTAGG+AGG | 0.556200 | 5.2:-17633918 | MS.gene84998:CDS |
| CTGTCTCAAGCATCATTGCT+CGG | 0.558637 | 5.2:+17633946 | None:intergenic |
| AGTGCACGCTCATACCACTT+TGG | 0.562854 | 5.2:+17633774 | None:intergenic |
| AAATTTGCACACCGTATGGT+TGG | 0.563076 | 5.2:-17633690 | MS.gene84998:CDS |
| GTTTCTCAAGGAGCTTGACA+AGG | 0.563279 | 5.2:-17633631 | MS.gene84998:CDS |
| CTCATACACTGAGTTTCTCA+AGG | 0.566793 | 5.2:-17633643 | MS.gene84998:CDS |
| CAATAGTCAATAGCAATAGC+TGG | 0.570433 | 5.2:+17633585 | None:intergenic |
| TGCTTGCGTTCCTTACAAGA+GGG | 0.572460 | 5.2:+17635424 | None:intergenic |
| TCTGCTTTGTATGTCTCCCA+TGG | 0.581364 | 5.2:+17635133 | None:intergenic |
| CGCCGATTTGAGCACAGTGG+TGG | 0.585049 | 5.2:-17633870 | MS.gene84998:CDS |
| GATTTGAGCACAGTGGTGGA+TGG | 0.585457 | 5.2:-17633866 | MS.gene84998:CDS |
| AGTGAATAGCTTCTTCCTCA+AGG | 0.587319 | 5.2:+17633664 | None:intergenic |
| GTGCTTGCGTTCCTTACAAG+AGG | 0.587389 | 5.2:+17635423 | None:intergenic |
| AGTAGCTGCTGTCCCTGGCA+TGG | 0.598186 | 5.2:-17633925 | MS.gene84998:CDS |
| ATGATGAGGCATGGTGGTCA+CGG | 0.609582 | 5.2:-17635546 | MS.gene84998:CDS |
| TCTAAGATCACAAAACCTGA+TGG | 0.617644 | 5.2:-17635267 | MS.gene84998:CDS |
| CAATAGCAATAGCTGGAGCA+GGG | 0.618562 | 5.2:+17633592 | None:intergenic |
| CGATGTTAACCACTTTGCAT+CGG | 0.619490 | 5.2:-17633493 | MS.gene84998:intron |
| CCACCCTGAGACGACGACGA+CGG | 0.620652 | 5.2:+17635345 | None:intergenic |
| GATCGAAGAAGATGATGATG+AGG | 0.622737 | 5.2:-17635560 | None:intergenic |
| GCACTTGTCATAACTGTCCA+GGG | 0.622780 | 5.2:-17633756 | MS.gene84998:CDS |
| CCTCAAGGTAACCAACCATA+CGG | 0.624191 | 5.2:+17633679 | None:intergenic |
| TGGAAGTGGCAAAGCCAAAG+TGG | 0.631195 | 5.2:-17633788 | MS.gene84998:CDS |
| GCTTGCGTTCCTTACAAGAG+GGG | 0.632754 | 5.2:+17635425 | None:intergenic |
| CCGTATGGTTGGTTACCTTG+AGG | 0.649479 | 5.2:-17633679 | MS.gene84998:CDS |
| GCATTCCTCCTACCATGCCA+GGG | 0.651988 | 5.2:+17633913 | None:intergenic |
| ACAAACATACCGATGCAAAG+TGG | 0.652245 | 5.2:+17633484 | None:intergenic |
| TTTCTCAAGGAGCTTGACAA+GGG | 0.653346 | 5.2:-17633630 | MS.gene84998:CDS |
| CCCTGAGACGACGACGACGG+AGG | 0.657783 | 5.2:+17635348 | None:intergenic |
| GTTGGTGTTCCAAACAAATG+GGG | 0.661779 | 5.2:-17635468 | MS.gene84998:CDS |
| AAGCATTGAAGAAAACACCC+TGG | 0.672042 | 5.2:+17633739 | None:intergenic |
| AAGAAGATGATGATGAGGCA+TGG | 0.686981 | 5.2:-17635555 | None:intergenic |
| TTGCAGGATATACATTACCA+AGG | 0.701646 | 5.2:-17633191 | MS.gene84998:intron |
| CCGTCGTCGTCGTCTCAGGG+TGG | 0.709337 | 5.2:-17635345 | MS.gene84998:CDS |
| AAGATGATGATGAGGCATGG+TGG | 0.746370 | 5.2:-17635552 | MS.gene84998:CDS |
| CCAAGGACGAGAGTTAAGGG+AGG | 0.747025 | 5.2:-17633174 | MS.gene84998:CDS |
| TTGCGCCGATTTGAGCACAG+TGG | 0.750440 | 5.2:-17633873 | MS.gene84998:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTATTTATTTTA+TGG | - | chr5.2:17633938-17633957 | MS.gene84998:CDS | 0.0% |
| !! | GAAAAAAATTAACAAAAAAA+TGG | - | chr5.2:17633876-17633895 | MS.gene84998:CDS | 10.0% |
| !! | TATTATTATTATAAAAATCC+GGG | - | chr5.2:17633747-17633766 | MS.gene84998:CDS | 10.0% |
| !!! | AAAATGATTTTTTTTTAATG+TGG | - | chr5.2:17633525-17633544 | MS.gene84998:CDS | 10.0% |
| !!! | TTTTTGTTAATTTTTTTCAA+AGG | + | chr5.2:17633874-17633893 | None:intergenic | 10.0% |
| !! | AAACCTAATTAAAAATATGA+TGG | + | chr5.2:17634135-17634154 | None:intergenic | 15.0% |
| !! | AAACTTTGAACATAATTTAT+AGG | + | chr5.2:17634644-17634663 | None:intergenic | 15.0% |
| !! | AAATAAAAAATTGCTTAAAC+TGG | - | chr5.2:17634473-17634492 | MS.gene84998:intron | 15.0% |
| !! | ATTCAAATTTCATTCTTATT+AGG | + | chr5.2:17634578-17634597 | None:intergenic | 15.0% |
| !! | TTCAAATTTCATTCTTATTA+GGG | + | chr5.2:17634577-17634596 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATTTTATGGTC+AGG | - | chr5.2:17633943-17633962 | MS.gene84998:CDS | 15.0% |
| !!! | TCAATTATATTGTTTTTTAG+AGG | + | chr5.2:17634414-17634433 | None:intergenic | 15.0% |
| !!! | TTTTATTTATTTTATGGTCA+GGG | - | chr5.2:17633944-17633963 | MS.gene84998:CDS | 15.0% |
| !! | GTAGCTTATAGATAAATAAA+TGG | + | chr5.2:17635271-17635290 | None:intergenic | 20.0% |
| !! | TTATGCATGATTGAATATTT+AGG | + | chr5.2:17634169-17634188 | None:intergenic | 20.0% |
| !!! | ACATAAAATACTTTTGATCT+TGG | + | chr5.2:17634683-17634702 | None:intergenic | 20.0% |
| !!! | TTAACAAAAAAATGGATTTC+AGG | - | chr5.2:17633884-17633903 | MS.gene84998:CDS | 20.0% |
| !!! | TTGTTAATTTTTTTCAAAGG+AGG | + | chr5.2:17633871-17633890 | None:intergenic | 20.0% |
| ! | CATAATAAAAAGACAGATCA+TGG | + | chr5.2:17635321-17635340 | None:intergenic | 25.0% |
| ! | CCTAATTAAAAATATGATGG+CGG | + | chr5.2:17634132-17634151 | None:intergenic | 25.0% |
| ! | GTATTTAATTGAAACAGAGA+AGG | - | chr5.2:17634720-17634739 | MS.gene84998:intron | 25.0% |
| ! | GTGATAACAAAGATGAAAAA+GGG | - | chr5.2:17633380-17633399 | MS.gene84998:intron | 25.0% |
| ! | TACCATACAGTATAAAACAT+TGG | + | chr5.2:17634274-17634293 | None:intergenic | 25.0% |
| !! | ATCCAATGTTTTATACTGTA+TGG | - | chr5.2:17634269-17634288 | MS.gene84998:intron | 25.0% |
| !! | GTGGATTATTTCAAAACAAA+AGG | + | chr5.2:17634325-17634344 | None:intergenic | 25.0% |
| !! | TTCTTCAATGCTTATTTCTT+AGG | - | chr5.2:17634968-17634987 | MS.gene84998:intron | 25.0% |
| !! | TTTCTAAAAAGACACAACTA+TGG | + | chr5.2:17635409-17635428 | None:intergenic | 25.0% |
| !! | TTTTCAAACCAAAAGGTAAA+AGG | + | chr5.2:17634360-17634379 | None:intergenic | 25.0% |
| !!! | AATTTTTTTCAAAGGAGGTA+AGG | + | chr5.2:17633866-17633885 | None:intergenic | 25.0% |
| !!! | TAGTTGTGTCTTTTTAGAAA+TGG | - | chr5.2:17635409-17635428 | MS.gene84998:CDS | 25.0% |
| !!! | TTCATCTGAGTATTTTGAAT+GGG | - | chr5.2:17635448-17635467 | MS.gene84998:CDS | 25.0% |
| AAAAAGGGATTACGAGTTAT+TGG | - | chr5.2:17633395-17633414 | MS.gene84998:intron | 30.0% | |
| AAAAGGGATTACGAGTTATT+GGG | - | chr5.2:17633396-17633415 | MS.gene84998:intron | 30.0% | |
| ACAAAATAACCCCATTTGTT+TGG | + | chr5.2:17633241-17633260 | None:intergenic | 30.0% | |
| ATAGGATAGTAAGTTCATCA+AGG | + | chr5.2:17634626-17634645 | None:intergenic | 30.0% | |
| CATCGAATCTTTATTAGAAG+AGG | - | chr5.2:17633829-17633848 | MS.gene84998:CDS | 30.0% | |
| CATTCAAAATACTCAGATGA+AGG | + | chr5.2:17635449-17635468 | None:intergenic | 30.0% | |
| CTATAAGCTACAAATTCAAG+AGG | - | chr5.2:17635280-17635299 | MS.gene84998:CDS | 30.0% | |
| CTCTTCTAATAAAGATTCGA+TGG | + | chr5.2:17633831-17633850 | None:intergenic | 30.0% | |
| CTTCTTTGCAAACAACATTA+CGG | + | chr5.2:17633191-17633210 | None:intergenic | 30.0% | |
| GGTGATAACAAAGATGAAAA+AGG | - | chr5.2:17633379-17633398 | MS.gene84998:intron | 30.0% | |
| TAACAATAATAGCTAGCAAG+TGG | + | chr5.2:17634388-17634407 | None:intergenic | 30.0% | |
| TAATTGAAACAGAGAAGGTA+TGG | - | chr5.2:17634725-17634744 | MS.gene84998:intron | 30.0% | |
| TAGGATAGTAAGTTCATCAA+GGG | + | chr5.2:17634625-17634644 | None:intergenic | 30.0% | |
| TATTATAAAAATCCGGGTTC+TGG | - | chr5.2:17633753-17633772 | MS.gene84998:CDS | 30.0% | |
| TCCTCAAAACTCTACTTTAA+GGG | - | chr5.2:17635141-17635160 | MS.gene84998:intron | 30.0% | |
| TTCCTCAAAACTCTACTTTA+AGG | - | chr5.2:17635140-17635159 | MS.gene84998:intron | 30.0% | |
| TTTGCAAAGAAGGGTTTATT+AGG | - | chr5.2:17633199-17633218 | MS.gene84998:intron | 30.0% | |
| ! | AAATGGATTTCAGGAATTAC+TGG | - | chr5.2:17633893-17633912 | MS.gene84998:CDS | 30.0% |
| ! | GGATTTCTTTTCAAACCAAA+AGG | + | chr5.2:17634367-17634386 | None:intergenic | 30.0% |
| ! | GTAATGTTGTTTGCAAAGAA+GGG | - | chr5.2:17633190-17633209 | MS.gene84998:intron | 30.0% |
| ! | GTTTTCATGTAATGAATTGC+AGG | - | chr5.2:17635490-17635509 | MS.gene84998:CDS | 30.0% |
| ! | TCATAAACCAACAACTTTTC+TGG | - | chr5.2:17633611-17633630 | MS.gene84998:CDS | 30.0% |
| !! | CCGCCATCATATTTTTAATT+AGG | - | chr5.2:17634129-17634148 | MS.gene84998:intron | 30.0% |
| !! | CTTCATCTGAGTATTTTGAA+TGG | - | chr5.2:17635447-17635466 | MS.gene84998:CDS | 30.0% |
| !!! | TTTTAAGGTACCTTTGTTCA+AGG | - | chr5.2:17634106-17634125 | MS.gene84998:intron | 30.0% |
| AAAGGGATTACGAGTTATTG+GGG | - | chr5.2:17633397-17633416 | MS.gene84998:intron | 35.0% | |
| AACAAAAGGTCATCATTCTG+TGG | + | chr5.2:17634311-17634330 | None:intergenic | 35.0% | |
| AATGGAAATGGAATTGCTTC+AGG | - | chr5.2:17633458-17633477 | MS.gene84998:intron | 35.0% | |
| ACCTGAAAAAAGAGATCAGT+TGG | + | chr5.2:17633675-17633694 | None:intergenic | 35.0% | |
| AGGATAGTAAGTTCATCAAG+GGG | + | chr5.2:17634624-17634643 | None:intergenic | 35.0% | |
| ATCTTGTCCAGAAAAGTTGT+TGG | + | chr5.2:17633621-17633640 | None:intergenic | 35.0% | |
| ATGGAAATGGAATTGCTTCA+GGG | - | chr5.2:17633459-17633478 | MS.gene84998:intron | 35.0% | |
| ATTGGACTGTTAAGAGTCTT+AGG | - | chr5.2:17633646-17633665 | MS.gene84998:CDS | 35.0% | |
| CAATAGTCAATAGCAATAGC+TGG | + | chr5.2:17635115-17635134 | None:intergenic | 35.0% | |
| GTCAGTTGGTTACATGAAAT+GGG | - | chr5.2:17634233-17634252 | MS.gene84998:intron | 35.0% | |
| TGAAATAATCCACCACAAGA+TGG | - | chr5.2:17634332-17634351 | MS.gene84998:intron | 35.0% | |
| TGCATAATGCATGTGATGTT+TGG | - | chr5.2:17634182-17634201 | MS.gene84998:intron | 35.0% | |
| TTAAAACCTCTTCAGGAGTT+AGG | + | chr5.2:17634092-17634111 | None:intergenic | 35.0% | |
| TTGCAGGATATACATTACCA+AGG | - | chr5.2:17635506-17635525 | MS.gene84998:CDS | 35.0% | |
| ! | AACAACTTTTCTGGACAAGA+TGG | - | chr5.2:17633620-17633639 | MS.gene84998:CDS | 35.0% |
| ! | AGTTGGTGTTCCAAACAAAT+GGG | - | chr5.2:17633228-17633247 | MS.gene84998:intron | 35.0% |
| ! | CAGCTATTGCTATTGACTAT+TGG | - | chr5.2:17635113-17635132 | MS.gene84998:CDS | 35.0% |
| ! | CGTAATGTTGTTTGCAAAGA+AGG | - | chr5.2:17633189-17633208 | MS.gene84998:intron | 35.0% |
| ! | TAACTCCTGAAGAGGTTTTA+AGG | - | chr5.2:17634091-17634110 | MS.gene84998:intron | 35.0% |
| ! | TCCCTTAAAGTAGAGTTTTG+AGG | + | chr5.2:17635145-17635164 | None:intergenic | 35.0% |
| ! | TCTAAGATCACAAAACCTGA+TGG | - | chr5.2:17633430-17633449 | MS.gene84998:intron | 35.0% |
| !! | AAGTTGGTGTTCCAAACAAA+TGG | - | chr5.2:17633227-17633246 | MS.gene84998:intron | 35.0% |
| !! | TCAGGTTTTGTGATCTTAGA+AGG | + | chr5.2:17633430-17633449 | None:intergenic | 35.0% |
| !!! | ATTTTGATTGTGACAGCCAT+GGG | - | chr5.2:17633548-17633567 | MS.gene84998:CDS | 35.0% |
| !!! | TCCAACTGATCTCTTTTTTC+AGG | - | chr5.2:17633671-17633690 | MS.gene84998:CDS | 35.0% |
| AAAAGGTCATCATTCTGTGG+TGG | + | chr5.2:17634308-17634327 | None:intergenic | 40.0% | |
| AAATTTGCACACCGTATGGT+TGG | - | chr5.2:17635007-17635026 | MS.gene84998:intron | 40.0% | |
| AACCATACGGTGTGCAAATT+TGG | + | chr5.2:17635008-17635027 | None:intergenic | 40.0% | |
| ACAAACATACCGATGCAAAG+TGG | + | chr5.2:17635216-17635235 | None:intergenic | 40.0% | |
| ACCATACGGTGTGCAAATTT+GGG | + | chr5.2:17635007-17635026 | None:intergenic | 40.0% | |
| AGGTACCTTAAAACCTCTTC+AGG | + | chr5.2:17634099-17634118 | None:intergenic | 40.0% | |
| AGTGAATAGCTTCTTCCTCA+AGG | + | chr5.2:17635036-17635055 | None:intergenic | 40.0% | |
| ATTACCAAGGACGAGAGTTA+AGG | - | chr5.2:17635519-17635538 | MS.gene84998:CDS | 40.0% | |
| ATTGCGCAAAAGTGAGACAA+AGG | + | chr5.2:17635244-17635263 | None:intergenic | 40.0% | |
| CATGCACCTAATGACTTTCA+TGG | - | chr5.2:17634889-17634908 | MS.gene84998:intron | 40.0% | |
| CATTTCCATTCAGTACCATC+AGG | + | chr5.2:17633448-17633467 | None:intergenic | 40.0% | |
| CCACTTCCATGAAAGTCATT+AGG | + | chr5.2:17634898-17634917 | None:intergenic | 40.0% | |
| CCTAATGACTTTCATGGAAG+TGG | - | chr5.2:17634895-17634914 | MS.gene84998:intron | 40.0% | |
| CGATGTTAACCACTTTGCAT+CGG | - | chr5.2:17635204-17635223 | MS.gene84998:intron | 40.0% | |
| CTCATACACTGAGTTTCTCA+AGG | - | chr5.2:17635054-17635073 | MS.gene84998:CDS | 40.0% | |
| GCAAAGAAGGGTTTATTAGG+TGG | - | chr5.2:17633202-17633221 | MS.gene84998:intron | 40.0% | |
| GGTCAGTTGGTTACATGAAA+TGG | - | chr5.2:17634232-17634251 | MS.gene84998:intron | 40.0% | |
| GGTTTATTAGGTGGTGAAGT+TGG | - | chr5.2:17633211-17633230 | MS.gene84998:intron | 40.0% | |
| TGCTAATCTGTCAGATCAGA+AGG | - | chr5.2:17633303-17633322 | MS.gene84998:intron | 40.0% | |
| TTACCAAGGACGAGAGTTAA+GGG | - | chr5.2:17635520-17635539 | MS.gene84998:CDS | 40.0% | |
| TTCTGGACAAGATGGCTTAT+TGG | - | chr5.2:17633628-17633647 | MS.gene84998:CDS | 40.0% | |
| TTGCGCAAAAGTGAGACAAA+GGG | + | chr5.2:17635243-17635262 | None:intergenic | 40.0% | |
| TTGTTTGGATGCATGTGCTT+TGG | - | chr5.2:17634206-17634225 | MS.gene84998:intron | 40.0% | |
| TTTCTCAAGGAGCTTGACAA+GGG | - | chr5.2:17635067-17635086 | MS.gene84998:CDS | 40.0% | |
| ! | AGATGGTGCCTTTTACCTTT+TGG | - | chr5.2:17634349-17634368 | MS.gene84998:intron | 40.0% |
| ! | CAAAACCTGATGGTACTGAA+TGG | - | chr5.2:17633440-17633459 | MS.gene84998:intron | 40.0% |
| ! | CTGATGGTACTGAATGGAAA+TGG | - | chr5.2:17633446-17633465 | MS.gene84998:intron | 40.0% |
| ! | GTTGGTGTTCCAAACAAATG+GGG | - | chr5.2:17633229-17633248 | MS.gene84998:intron | 40.0% |
| ! | TACTTTAAGGGATGTTGTCG+AGG | - | chr5.2:17635153-17635172 | MS.gene84998:intron | 40.0% |
| !! | AAGCATTGAAGAAAACACCC+TGG | + | chr5.2:17634961-17634980 | None:intergenic | 40.0% |
| !! | CATGTGATGTTTGGCTTGTT+TGG | - | chr5.2:17634191-17634210 | MS.gene84998:intron | 40.0% |
| !!! | GATTTTGATTGTGACAGCCA+TGG | - | chr5.2:17633547-17633566 | MS.gene84998:CDS | 40.0% |
| AAACCTCTTCAGGAGTTAGG+TGG | + | chr5.2:17634089-17634108 | None:intergenic | 45.0% | |
| ACCCAAATTTGCACACCGTA+TGG | - | chr5.2:17635003-17635022 | MS.gene84998:intron | 45.0% | |
| ATCCACCACTGTGCTCAAAT+CGG | + | chr5.2:17634832-17634851 | None:intergenic | 45.0% | |
| CAATAGCAATAGCTGGAGCA+GGG | + | chr5.2:17635108-17635127 | None:intergenic | 45.0% | |
| CCTCAAGGTAACCAACCATA+CGG | + | chr5.2:17635021-17635040 | None:intergenic | 45.0% | |
| CTGTCTCAAGCATCATTGCT+CGG | + | chr5.2:17634754-17634773 | None:intergenic | 45.0% | |
| GAGAGTTGGATCTAGCAGAA+GGG | - | chr5.2:17633782-17633801 | MS.gene84998:CDS | 45.0% | |
| GATCAACAACCCCTCTTGTA+AGG | - | chr5.2:17633263-17633282 | MS.gene84998:intron | 45.0% | |
| GCACTTGTCATAACTGTCCA+GGG | - | chr5.2:17634941-17634960 | MS.gene84998:intron | 45.0% | |
| GTTTCTCAAGGAGCTTGACA+AGG | - | chr5.2:17635066-17635085 | MS.gene84998:CDS | 45.0% | |
| TCAATAGCAATAGCTGGAGC+AGG | + | chr5.2:17635109-17635128 | None:intergenic | 45.0% | |
| TCGATGGTTCGCTACATTGT+GGG | + | chr5.2:17633815-17633834 | None:intergenic | 45.0% | |
| TCTGCTTTGTATGTCTCCCA+TGG | + | chr5.2:17633567-17633586 | None:intergenic | 45.0% | |
| TGAGAGTTGGATCTAGCAGA+AGG | - | chr5.2:17633781-17633800 | MS.gene84998:CDS | 45.0% | |
| TGCACTTGTCATAACTGTCC+AGG | - | chr5.2:17634940-17634959 | MS.gene84998:intron | 45.0% | |
| TGCTTGCGTTCCTTACAAGA+GGG | + | chr5.2:17633276-17633295 | None:intergenic | 45.0% | |
| TGGATGCATGTGCTTTGGTA+AGG | - | chr5.2:17634211-17634230 | MS.gene84998:intron | 45.0% | |
| TGTGCTTTGGTAAGGTCAGT+TGG | - | chr5.2:17634219-17634238 | MS.gene84998:intron | 45.0% | |
| TTCAGGAGTTAGGTGGAGTT+AGG | + | chr5.2:17634082-17634101 | None:intergenic | 45.0% | |
| TTCGATGGTTCGCTACATTG+TGG | + | chr5.2:17633816-17633835 | None:intergenic | 45.0% | |
| !! | AGGTAAAAGGCACCATCTTG+TGG | + | chr5.2:17634347-17634366 | None:intergenic | 45.0% |
| !! | TAAAAGGCACCATCTTGTGG+TGG | + | chr5.2:17634344-17634363 | None:intergenic | 45.0% |
| !! | TTATTATTATTATAAAAATC+CGG | - | chr5.2:17633746-17633765 | MS.gene84998:CDS | 5.0% |
| ACTCCACCTAACTCCTGAAG+AGG | - | chr5.2:17634083-17634102 | MS.gene84998:intron | 50.0% | |
| ACTCTCATCGATCCAGAACC+CGG | + | chr5.2:17633768-17633787 | None:intergenic | 50.0% | |
| AGTGCACGCTCATACCACTT+TGG | + | chr5.2:17634926-17634945 | None:intergenic | 50.0% | |
| ATGATGAGGCATGGTGGTCA+CGG | - | chr5.2:17633151-17633170 | MS.gene84998:CDS | 50.0% | |
| GCTTGCGTTCCTTACAAGAG+GGG | + | chr5.2:17633275-17633294 | None:intergenic | 50.0% | |
| GGATGTTGTCGAGGTTGTCA+GGG | - | chr5.2:17635162-17635181 | MS.gene84998:intron | 50.0% | |
| GTGCTTGCGTTCCTTACAAG+AGG | + | chr5.2:17633277-17633296 | None:intergenic | 50.0% | |
| TGGAAGTGGCAAAGCCAAAG+TGG | - | chr5.2:17634909-17634928 | MS.gene84998:intron | 50.0% | |
| ! | CCGTATGGTTGGTTACCTTG+AGG | - | chr5.2:17635018-17635037 | MS.gene84998:intron | 50.0% |
| ! | GATTTGAGCACAGTGGTGGA+TGG | - | chr5.2:17634831-17634850 | MS.gene84998:intron | 50.0% |
| !! | ATGATGGCGGCCTTGAACAA+AGG | + | chr5.2:17634119-17634138 | None:intergenic | 50.0% |
| !! | GGTTCTGGATCGATGAGAGT+TGG | - | chr5.2:17633768-17633787 | MS.gene84998:CDS | 50.0% |
| AGCATTCCTCCTACCATGCC+AGG | + | chr5.2:17634788-17634807 | None:intergenic | 55.0% | |
| CCAAGGACGAGAGTTAAGGG+AGG | - | chr5.2:17635523-17635542 | MS.gene84998:CDS | 55.0% | |
| CCTCCCTTAACTCTCGTCCT+TGG | + | chr5.2:17635526-17635545 | None:intergenic | 55.0% | |
| GCATTCCTCCTACCATGCCA+GGG | + | chr5.2:17634787-17634806 | None:intergenic | 55.0% | |
| GGGATGTTGTCGAGGTTGTC+AGG | - | chr5.2:17635161-17635180 | MS.gene84998:intron | 55.0% | |
| !! | TTGCGCCGATTTGAGCACAG+TGG | - | chr5.2:17634824-17634843 | MS.gene84998:intron | 55.0% |
| AGGGAGGCTGCTGCTCCAAT+TGG | - | chr5.2:17635539-17635558 | MS.gene84998:CDS | 60.0% | |
| AGTAGCTGCTGTCCCTGGCA+TGG | - | chr5.2:17634772-17634791 | MS.gene84998:intron | 60.0% | |
| GAGACAGTAGCTGCTGTCCC+TGG | - | chr5.2:17634767-17634786 | MS.gene84998:intron | 60.0% | |
| !! | CGCCGATTTGAGCACAGTGG+TGG | - | chr5.2:17634827-17634846 | MS.gene84998:intron | 60.0% |
| CCACCCTGAGACGACGACGA+CGG | + | chr5.2:17633355-17633374 | None:intergenic | 65.0% | |
| CCTCCGTCGTCGTCGTCTCA+GGG | - | chr5.2:17633349-17633368 | MS.gene84998:intron | 65.0% | |
| GCTGCTGTCCCTGGCATGGT+AGG | - | chr5.2:17634776-17634795 | MS.gene84998:intron | 65.0% | |
| GCTGTCCCTGGCATGGTAGG+AGG | - | chr5.2:17634779-17634798 | MS.gene84998:intron | 65.0% | |
| TCCTCCGTCGTCGTCGTCTC+AGG | - | chr5.2:17633348-17633367 | MS.gene84998:intron | 65.0% | |
| TCGTCGTCTCAGGGTGGTGC+TGG | - | chr5.2:17633358-17633377 | MS.gene84998:intron | 65.0% | |
| CCCTGAGACGACGACGACGG+AGG | + | chr5.2:17633352-17633371 | None:intergenic | 70.0% | |
| CCGTCGTCGTCGTCTCAGGG+TGG | - | chr5.2:17633352-17633371 | MS.gene84998:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 17633148 | 17635571 | 17633148 | ID=MS.gene84998 |
| chr5.2 | mRNA | 17633148 | 17635571 | 17633148 | ID=MS.gene84998.t1;Parent=MS.gene84998 |
| chr5.2 | exon | 17635239 | 17635571 | 17635239 | ID=MS.gene84998.t1.exon1;Parent=MS.gene84998.t1 |
| chr5.2 | CDS | 17635239 | 17635571 | 17635239 | ID=cds.MS.gene84998.t1;Parent=MS.gene84998.t1 |
| chr5.2 | exon | 17635027 | 17635155 | 17635027 | ID=MS.gene84998.t1.exon2;Parent=MS.gene84998.t1 |
| chr5.2 | CDS | 17635027 | 17635155 | 17635027 | ID=cds.MS.gene84998.t1;Parent=MS.gene84998.t1 |
| chr5.2 | exon | 17633494 | 17633982 | 17633494 | ID=MS.gene84998.t1.exon3;Parent=MS.gene84998.t1 |
| chr5.2 | CDS | 17633494 | 17633982 | 17633494 | ID=cds.MS.gene84998.t1;Parent=MS.gene84998.t1 |
| chr5.2 | exon | 17633148 | 17633207 | 17633148 | ID=MS.gene84998.t1.exon4;Parent=MS.gene84998.t1 |
| chr5.2 | CDS | 17633148 | 17633207 | 17633148 | ID=cds.MS.gene84998.t1;Parent=MS.gene84998.t1 |
| Gene Sequence |
| Protein sequence |
