AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83481

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83481.t1 MTR_5g026620 96.262 321 9 2 1 321 13 330 0.0 644
MS.gene83481.t1 MTR_5g026620 98.667 225 3 0 97 321 38 262 2.06e-169 471
MS.gene83481.t1 MTR_4g094222 75.600 250 61 0 72 321 96 345 8.66e-150 424
MS.gene83481.t1 MTR_5g070680 67.424 264 86 0 58 321 60 323 8.30e-140 398
MS.gene83481.t1 MTR_5g070870 64.085 284 92 1 38 321 51 324 2.46e-133 382
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83481.t1 AT3G22370 79.743 311 60 1 14 321 44 354 0.0 523
MS.gene83481.t1 AT3G22360 84.249 273 41 1 51 321 53 325 2.35e-176 491
MS.gene83481.t1 AT3G27620 82.528 269 39 1 61 321 61 329 2.16e-169 473
MS.gene83481.t1 AT1G32350 70.652 276 73 1 54 321 43 318 1.04e-154 436
MS.gene83481.t1 AT5G64210 70.438 274 75 2 50 321 84 353 3.05e-148 421
MS.gene83481.t1 AT1G32350 70.817 257 67 1 54 302 43 299 2.14e-143 407

Find 80 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCATACGGTGTGCAAATT+TGG 0.112313 5.2:-17506463 None:intergenic
TTCCTCAAAACTCTACTTTA+AGG 0.145682 5.2:+17506598 MS.gene83481:CDS
TTCTGGACAAGATGGCTTAT+TGG 0.228191 5.2:+17505264 MS.gene83481:CDS
TCCAAACAAATGGGGTTATT+TGG 0.231356 5.2:+17504870 MS.gene83481:CDS
TTCTTCAATGCTTATTTCTT+AGG 0.252741 5.2:+17506426 MS.gene83481:CDS
ATTGGACTGTTAAGAGTCTT+AGG 0.253076 5.2:+17505282 MS.gene83481:CDS
ACCAAATAACCCCATTTGTT+TGG 0.264764 5.2:-17504871 None:intergenic
GGTGATAACAAAGATGAAAA+AGG 0.272034 5.2:+17505012 MS.gene83481:CDS
AAAAGGGATTACCAGTTATT+GGG 0.302542 5.2:+17505029 MS.gene83481:CDS
TTTGCAAAGAAGGGTTTATT+AGG 0.324829 5.2:+17504832 MS.gene83481:CDS
AATGGAAATGGAATTGCTTC+AGG 0.325465 5.2:+17505091 MS.gene83481:CDS
CGTAATGTTGTTTGCAAAGA+AGG 0.348388 5.2:+17504822 None:intergenic
CAGCTATTGCTATTGACTAT+TGG 0.356927 5.2:+17506571 MS.gene83481:CDS
GGGATGTTGTCGAGGTTGTC+AGG 0.363968 5.2:+17506619 MS.gene83481:CDS
ACCATACGGTGTGCAAATTT+GGG 0.381391 5.2:-17506462 None:intergenic
TCCTCAAAACTCTACTTTAA+GGG 0.382420 5.2:+17506599 MS.gene83481:CDS
CATGCACCTGATGACTTTCA+TGG 0.388105 5.2:+17506347 MS.gene83481:CDS
GATCAACAACCCCTCTTGTA+AGG 0.418814 5.2:+17504896 MS.gene83481:CDS
GGTTTATTAGGTGGTGAAGT+TGG 0.424159 5.2:+17504844 MS.gene83481:CDS
AGGTTGAACACCCCAATAAC+TGG 0.436601 5.2:-17505040 None:intergenic
AGGGAGGCTGCTGCTCCAAT+TGG 0.436968 5.2:+17506996 MS.gene83481:CDS
AAGTTGGTGTTCCAAACAAA+TGG 0.440248 5.2:+17504860 MS.gene83481:CDS
AGTTGGTGTTCCAAACAAAT+GGG 0.442514 5.2:+17504861 MS.gene83481:CDS
AGCATTCCTCCTACCATGCC+AGG 0.449536 5.2:-17506243 None:intergenic
TCGTCGTCTCAGGGTGGTGC+TGG 0.451393 5.2:+17504991 MS.gene83481:CDS
ATTACCAAGGACGAGAGTTA+AGG 0.452922 5.2:+17506976 MS.gene83481:CDS
TTACCAAGGACGAGAGTTAA+GGG 0.457110 5.2:+17506977 MS.gene83481:CDS
CTGATGGTACTGAATGGAAA+TGG 0.462655 5.2:+17505079 MS.gene83481:CDS
CCACTTCCATGAAAGTCATC+AGG 0.462886 5.2:-17506353 None:intergenic
TGCACTTGTCATAACTGTCC+AGG 0.463520 5.2:+17506398 MS.gene83481:CDS
CATTTCCATTCAGTACCATC+AGG 0.464852 5.2:-17505078 None:intergenic
ATCTTGTCCAGAAAAGTTGT+TGG 0.465005 5.2:-17505254 None:intergenic
GGTATCTAGTGATAACCAAT+TGG 0.473206 5.2:-17507011 None:intergenic
GAGACAGTAGCTGCTGTCCC+TGG 0.491184 5.2:+17506225 MS.gene83481:CDS
ATCCACCACTGTGCTCAAAT+CGG 0.492142 5.2:-17506287 None:intergenic
GCTGCTGTCCCTGGCATGGT+AGG 0.504751 5.2:+17506234 MS.gene83481:CDS
ACCCAAATTTGCACACCGTA+TGG 0.511597 5.2:+17506461 MS.gene83481:CDS
ATGGAAATGGAATTGCTTCA+GGG 0.515778 5.2:+17505092 MS.gene83481:CDS
TAATTGAAACAGAGAAGGTA+TGG 0.517621 5.2:+17506183 MS.gene83481:intron
CAAAACCTGATGGTACTGAA+TGG 0.518207 5.2:+17505073 MS.gene83481:CDS
TGCTAATCTGTCAGATCAGA+AGG 0.526688 5.2:+17504936 MS.gene83481:CDS
TACTTTAAGGGATGTTGTCG+AGG 0.527952 5.2:+17506611 MS.gene83481:CDS
CCTCCCTTAACTCTCGTCCT+TGG 0.532033 5.2:-17506980 None:intergenic
GTAATGTTGTTTGCAAAGAA+GGG 0.540746 5.2:+17504823 None:intergenic
GGATGTTGTCGAGGTTGTCA+GGG 0.547504 5.2:+17506620 MS.gene83481:CDS
GCAAAGAAGGGTTTATTAGG+TGG 0.547710 5.2:+17504835 MS.gene83481:CDS
TCAATAGCAATAGCTGGAGC+AGG 0.548905 5.2:-17506564 None:intergenic
CCTGATGACTTTCATGGAAG+TGG 0.550544 5.2:+17506353 MS.gene83481:CDS
GCTGTCCCTGGCATGGTAGG+AGG 0.556200 5.2:+17506237 MS.gene83481:CDS
CTGTCTCAAGCATCATTGCT+CGG 0.558637 5.2:-17506209 None:intergenic
AGTGCACGCTCATACCACTT+TGG 0.562854 5.2:-17506381 None:intergenic
AAATTTGCACACCGTATGGT+TGG 0.563076 5.2:+17506465 MS.gene83481:CDS
GTTTCTCAAGGAGCTTGACA+AGG 0.563279 5.2:+17506524 MS.gene83481:CDS
CTCATACACTGAGTTTCTCA+AGG 0.566793 5.2:+17506512 MS.gene83481:CDS
CAATAGTCAATAGCAATAGC+TGG 0.570433 5.2:-17506570 None:intergenic
TGCTTGCGTTCCTTACAAGA+GGG 0.572460 5.2:-17504906 None:intergenic
TCTGCTTTGTATGTCTCCCA+TGG 0.581364 5.2:-17505200 None:intergenic
AAAGGGATTACCAGTTATTG+GGG 0.581745 5.2:+17505030 MS.gene83481:CDS
CGCCGATTTGAGCACAGTGG+TGG 0.585049 5.2:+17506285 MS.gene83481:CDS
GATTTGAGCACAGTGGTGGA+TGG 0.585457 5.2:+17506289 MS.gene83481:CDS
AGTGAATAGCTTCTTCCTCA+AGG 0.587319 5.2:-17506491 None:intergenic
GTGCTTGCGTTCCTTACAAG+AGG 0.587389 5.2:-17504907 None:intergenic
AGTAGCTGCTGTCCCTGGCA+TGG 0.598186 5.2:+17506230 MS.gene83481:CDS
TCTAAGATCACAAAACCTGA+TGG 0.617644 5.2:+17505063 MS.gene83481:CDS
CGATGTTAACCACTTTGCAT+CGG 0.619490 5.2:+17506662 MS.gene83481:CDS
GCACTTGTCATAACTGTCCA+GGG 0.622780 5.2:+17506399 MS.gene83481:CDS
CCTCAAGGTAACCAACCATA+CGG 0.624191 5.2:-17506476 None:intergenic
TGGAAGTGGCAAAGCCAAAG+TGG 0.631195 5.2:+17506367 MS.gene83481:CDS
GCTTGCGTTCCTTACAAGAG+GGG 0.632754 5.2:-17504905 None:intergenic
GACAACATACCGATGCAAAG+TGG 0.644093 5.2:-17506671 None:intergenic
CCCTGAGACGACGACGACGA+CGG 0.644525 5.2:-17504982 None:intergenic
CCGTATGGTTGGTTACCTTG+AGG 0.649479 5.2:+17506476 MS.gene83481:CDS
GCATTCCTCCTACCATGCCA+GGG 0.651988 5.2:-17506242 None:intergenic
TTTCTCAAGGAGCTTGACAA+GGG 0.653346 5.2:+17506525 MS.gene83481:CDS
GTTGGTGTTCCAAACAAATG+GGG 0.661779 5.2:+17504862 MS.gene83481:CDS
AAGCATTGAAGAAAACACCC+TGG 0.672042 5.2:-17506416 None:intergenic
TTGCAGGATATACATTACCA+AGG 0.701646 5.2:+17506963 MS.gene83481:intron
TCGTCGTCGTCGTCTCAGGG+TGG 0.724572 5.2:+17504985 MS.gene83481:CDS
CCAAGGACGAGAGTTAAGGG+AGG 0.747025 5.2:+17506980 MS.gene83481:CDS
TTGCGCCGATTTGAGCACAG+TGG 0.750440 5.2:+17506282 MS.gene83481:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATATTTTATTTATTTTA+TGG + chr5.2:17505563-17505582 MS.gene83481:intron 0.0%
!! TATTATTATTATAAAAATCC+GGG + chr5.2:17505377-17505396 MS.gene83481:intron 10.0%
!!! ATGATTTTTTTTTTTTAATG+TGG + chr5.2:17505161-17505180 MS.gene83481:intron 10.0%
!! AAACTTTGAACATAATTTAT+AGG - chr5.2:17506101-17506120 None:intergenic 15.0%
!! AAATAAAAAATTGCTTAAAC+TGG + chr5.2:17505930-17505949 MS.gene83481:intron 15.0%
!! ATTCAAATTTCATTCTTATT+AGG - chr5.2:17506035-17506054 None:intergenic 15.0%
!! TTCAAATTTCATTCTTATTA+GGG - chr5.2:17506034-17506053 None:intergenic 15.0%
!!! ATTTTATTTATTTTATGGTC+AGG + chr5.2:17505568-17505587 MS.gene83481:intron 15.0%
!!! TCAATTATATTGTTTTTTAG+AGG - chr5.2:17505871-17505890 None:intergenic 15.0%
!!! TTATTAATTTTTTTCAAAGG+AGG - chr5.2:17505496-17505515 None:intergenic 15.0%
!!! TTTTATTTATTTTATGGTCA+GGG + chr5.2:17505569-17505588 MS.gene83481:intron 15.0%
!! GTAGCTTATAGATAAATAAA+TGG - chr5.2:17506728-17506747 None:intergenic 20.0%
!! TTAAATCAGTTACATGAAAT+GGG + chr5.2:17505690-17505709 MS.gene83481:intron 20.0%
!! TTTAAATCAGTTACATGAAA+TGG + chr5.2:17505689-17505708 MS.gene83481:intron 20.0%
!!! ACATAAAATACTTTTGATCT+TGG - chr5.2:17506140-17506159 None:intergenic 20.0%
!!! TTAATAAAAAAATGGATTCC+AGG + chr5.2:17505509-17505528 MS.gene83481:intron 20.0%
! CATAATAAAAAGACAGATCA+TGG - chr5.2:17506778-17506797 None:intergenic 25.0%
! GTATTTAATTGAAACAGAGA+AGG + chr5.2:17506178-17506197 MS.gene83481:intron 25.0%
! GTGATAACAAAGATGAAAAA+GGG + chr5.2:17505013-17505032 MS.gene83481:CDS 25.0%
! TACCATACAGTATAAAACAT+TGG - chr5.2:17505731-17505750 None:intergenic 25.0%
!! ATCCAATGTTTTATACTGTA+TGG + chr5.2:17505726-17505745 MS.gene83481:intron 25.0%
!! TTCTTCAATGCTTATTTCTT+AGG + chr5.2:17506426-17506445 MS.gene83481:CDS 25.0%
!! TTTCTAAAAAGACACAACTA+TGG - chr5.2:17506866-17506885 None:intergenic 25.0%
!!! GTGGATTTTTTCAAAACAAA+AGG - chr5.2:17505782-17505801 None:intergenic 25.0%
!!! TAGTTGTGTCTTTTTAGAAA+TGG + chr5.2:17506866-17506885 MS.gene83481:intron 25.0%
!!! TTCATCTGAGTATTTTGAAT+GGG + chr5.2:17506905-17506924 MS.gene83481:intron 25.0%
AAAAAGGGATTACCAGTTAT+TGG + chr5.2:17505028-17505047 MS.gene83481:CDS 30.0%
AAAAGGGATTACCAGTTATT+GGG + chr5.2:17505029-17505048 MS.gene83481:CDS 30.0%
ATAGGATAGTAAGTTCATCA+AGG - chr5.2:17506083-17506102 None:intergenic 30.0%
CATCGAATCTTTATTAGAAG+AGG + chr5.2:17505459-17505478 MS.gene83481:intron 30.0%
CATTCAAAATACTCAGATGA+AGG - chr5.2:17506906-17506925 None:intergenic 30.0%
CTATAAGCTACAAATTCAAG+AGG + chr5.2:17506737-17506756 MS.gene83481:intron 30.0%
CTCTTCTAATAAAGATTCGA+TGG - chr5.2:17505461-17505480 None:intergenic 30.0%
GGTGATAACAAAGATGAAAA+AGG + chr5.2:17505012-17505031 MS.gene83481:CDS 30.0%
TAACAATAATAGCTAGCAAG+TGG - chr5.2:17505845-17505864 None:intergenic 30.0%
TAATTGAAACAGAGAAGGTA+TGG + chr5.2:17506183-17506202 MS.gene83481:intron 30.0%
TAGGATAGTAAGTTCATCAA+GGG - chr5.2:17506082-17506101 None:intergenic 30.0%
TATTATAAAAATCCGGGTTC+TGG + chr5.2:17505383-17505402 MS.gene83481:intron 30.0%
TCCTCAAAACTCTACTTTAA+GGG + chr5.2:17506599-17506618 MS.gene83481:CDS 30.0%
TTCCTCAAAACTCTACTTTA+AGG + chr5.2:17506598-17506617 MS.gene83481:CDS 30.0%
TTTGCAAAGAAGGGTTTATT+AGG + chr5.2:17504832-17504851 MS.gene83481:CDS 30.0%
! GGATTTCTTTTCAAACCAAA+AGG - chr5.2:17505824-17505843 None:intergenic 30.0%
! GTTTTCATGTAATGAATTGC+AGG + chr5.2:17506947-17506966 MS.gene83481:intron 30.0%
! TCATAAACCAACAACTTTTC+TGG + chr5.2:17505247-17505266 MS.gene83481:CDS 30.0%
!! CTTCATCTGAGTATTTTGAA+TGG + chr5.2:17506904-17506923 MS.gene83481:intron 30.0%
AAAATCACACCAGTAATTCC+TGG - chr5.2:17505530-17505549 None:intergenic 35.0%
AAAGGGATTACCAGTTATTG+GGG + chr5.2:17505030-17505049 MS.gene83481:CDS 35.0%
AACAAAAGGTCATCATTCTG+TGG - chr5.2:17505768-17505787 None:intergenic 35.0%
AATGGAAATGGAATTGCTTC+AGG + chr5.2:17505091-17505110 MS.gene83481:CDS 35.0%
ACCAAATAACCCCATTTGTT+TGG - chr5.2:17504874-17504893 None:intergenic 35.0%
ACCTGAAAAAAGAGATCAGT+TGG - chr5.2:17505311-17505330 None:intergenic 35.0%
AGGATAGTAAGTTCATCAAG+GGG - chr5.2:17506081-17506100 None:intergenic 35.0%
ATCTTGTCCAGAAAAGTTGT+TGG - chr5.2:17505257-17505276 None:intergenic 35.0%
ATGGAAATGGAATTGCTTCA+GGG + chr5.2:17505092-17505111 MS.gene83481:CDS 35.0%
ATTGGACTGTTAAGAGTCTT+AGG + chr5.2:17505282-17505301 MS.gene83481:CDS 35.0%
CAATAGTCAATAGCAATAGC+TGG - chr5.2:17506573-17506592 None:intergenic 35.0%
TCCAAACAAATGGGGTTATT+TGG + chr5.2:17504870-17504889 MS.gene83481:CDS 35.0%
TGAAAAAATCCACCACAAGA+TGG + chr5.2:17505789-17505808 MS.gene83481:intron 35.0%
TTGCAGGATATACATTACCA+AGG + chr5.2:17506963-17506982 MS.gene83481:intron 35.0%
! AAATGGATTCCAGGAATTAC+TGG + chr5.2:17505518-17505537 MS.gene83481:intron 35.0%
! AACAACTTTTCTGGACAAGA+TGG + chr5.2:17505256-17505275 MS.gene83481:CDS 35.0%
! AGTTGGTGTTCCAAACAAAT+GGG + chr5.2:17504861-17504880 MS.gene83481:CDS 35.0%
! CAGCTATTGCTATTGACTAT+TGG + chr5.2:17506571-17506590 MS.gene83481:CDS 35.0%
! TCCCTTAAAGTAGAGTTTTG+AGG - chr5.2:17506603-17506622 None:intergenic 35.0%
! TCTAAGATCACAAAACCTGA+TGG + chr5.2:17505063-17505082 MS.gene83481:CDS 35.0%
!! AAGTTGGTGTTCCAAACAAA+TGG + chr5.2:17504860-17504879 MS.gene83481:CDS 35.0%
!! AGATGGTGCTTTTTACCTTT+TGG + chr5.2:17505806-17505825 MS.gene83481:intron 35.0%
!! TCAGGTTTTGTGATCTTAGA+AGG - chr5.2:17505063-17505082 None:intergenic 35.0%
!!! ATTTTGATTGTGACAGCCAT+GGG + chr5.2:17505184-17505203 MS.gene83481:intron 35.0%
!!! TCCAACTGATCTCTTTTTTC+AGG + chr5.2:17505307-17505326 MS.gene83481:CDS 35.0%
AAAAGGTCATCATTCTGTGG+TGG - chr5.2:17505765-17505784 None:intergenic 40.0%
AAATTTGCACACCGTATGGT+TGG + chr5.2:17506465-17506484 MS.gene83481:CDS 40.0%
AACCATACGGTGTGCAAATT+TGG - chr5.2:17506466-17506485 None:intergenic 40.0%
ACCATACGGTGTGCAAATTT+GGG - chr5.2:17506465-17506484 None:intergenic 40.0%
AGTGAATAGCTTCTTCCTCA+AGG - chr5.2:17506494-17506513 None:intergenic 40.0%
ATTACCAAGGACGAGAGTTA+AGG + chr5.2:17506976-17506995 MS.gene83481:CDS 40.0%
CATTTCCATTCAGTACCATC+AGG - chr5.2:17505081-17505100 None:intergenic 40.0%
CGATGTTAACCACTTTGCAT+CGG + chr5.2:17506662-17506681 MS.gene83481:CDS 40.0%
CTCATACACTGAGTTTCTCA+AGG + chr5.2:17506512-17506531 MS.gene83481:CDS 40.0%
GCAAAGAAGGGTTTATTAGG+TGG + chr5.2:17504835-17504854 MS.gene83481:CDS 40.0%
GGTTTATTAGGTGGTGAAGT+TGG + chr5.2:17504844-17504863 MS.gene83481:CDS 40.0%
TGCTAATCTGTCAGATCAGA+AGG + chr5.2:17504936-17504955 MS.gene83481:CDS 40.0%
TTACCAAGGACGAGAGTTAA+GGG + chr5.2:17506977-17506996 MS.gene83481:CDS 40.0%
TTCTGGACAAGATGGCTTAT+TGG + chr5.2:17505264-17505283 MS.gene83481:CDS 40.0%
TTTCTCAAGGAGCTTGACAA+GGG + chr5.2:17506525-17506544 MS.gene83481:CDS 40.0%
! CAAAACCTGATGGTACTGAA+TGG + chr5.2:17505073-17505092 MS.gene83481:CDS 40.0%
! CTGATGGTACTGAATGGAAA+TGG + chr5.2:17505079-17505098 MS.gene83481:CDS 40.0%
! GTTGGTGTTCCAAACAAATG+GGG + chr5.2:17504862-17504881 MS.gene83481:CDS 40.0%
! TACTTTAAGGGATGTTGTCG+AGG + chr5.2:17506611-17506630 MS.gene83481:CDS 40.0%
!! AAGCATTGAAGAAAACACCC+TGG - chr5.2:17506419-17506438 None:intergenic 40.0%
!! AGGTAAAAAGCACCATCTTG+TGG - chr5.2:17505804-17505823 None:intergenic 40.0%
!! TAAAAAGCACCATCTTGTGG+TGG - chr5.2:17505801-17505820 None:intergenic 40.0%
!!! GATTTTGATTGTGACAGCCA+TGG + chr5.2:17505183-17505202 MS.gene83481:intron 40.0%
ACCCAAATTTGCACACCGTA+TGG + chr5.2:17506461-17506480 MS.gene83481:CDS 45.0%
AGGTTGAACACCCCAATAAC+TGG - chr5.2:17505043-17505062 None:intergenic 45.0%
ATCCACCACTGTGCTCAAAT+CGG - chr5.2:17506290-17506309 None:intergenic 45.0%
ATTGCGCAAGAGTGAGACAA+AGG - chr5.2:17506701-17506720 None:intergenic 45.0%
CATGCACCTGATGACTTTCA+TGG + chr5.2:17506347-17506366 MS.gene83481:CDS 45.0%
CCACTTCCATGAAAGTCATC+AGG - chr5.2:17506356-17506375 None:intergenic 45.0%
CCTCAAGGTAACCAACCATA+CGG - chr5.2:17506479-17506498 None:intergenic 45.0%
CCTGATGACTTTCATGGAAG+TGG + chr5.2:17506353-17506372 MS.gene83481:CDS 45.0%
CTGTCTCAAGCATCATTGCT+CGG - chr5.2:17506212-17506231 None:intergenic 45.0%
GACAACATACCGATGCAAAG+TGG - chr5.2:17506674-17506693 None:intergenic 45.0%
GAGAGTTGGATCTAGCAGAA+GGG + chr5.2:17505412-17505431 MS.gene83481:intron 45.0%
GATCAACAACCCCTCTTGTA+AGG + chr5.2:17504896-17504915 MS.gene83481:CDS 45.0%
GCACTTGTCATAACTGTCCA+GGG + chr5.2:17506399-17506418 MS.gene83481:CDS 45.0%
GTTTCTCAAGGAGCTTGACA+AGG + chr5.2:17506524-17506543 MS.gene83481:CDS 45.0%
TCAATAGCAATAGCTGGAGC+AGG - chr5.2:17506567-17506586 None:intergenic 45.0%
TCGATGGTTCGCTACATTGT+GGG - chr5.2:17505445-17505464 None:intergenic 45.0%
TCTGCTTTGTATGTCTCCCA+TGG - chr5.2:17505203-17505222 None:intergenic 45.0%
TGAGAGTTGGATCTAGCAGA+AGG + chr5.2:17505411-17505430 MS.gene83481:intron 45.0%
TGCACTTGTCATAACTGTCC+AGG + chr5.2:17506398-17506417 MS.gene83481:CDS 45.0%
TGCTTGCGTTCCTTACAAGA+GGG - chr5.2:17504909-17504928 None:intergenic 45.0%
TTCGATGGTTCGCTACATTG+TGG - chr5.2:17505446-17505465 None:intergenic 45.0%
TTGCGCAAGAGTGAGACAAA+GGG - chr5.2:17506700-17506719 None:intergenic 45.0%
!! GAAAAAAATTAATAAAAAAA+TGG + chr5.2:17505501-17505520 MS.gene83481:intron 5.0%
!! TTATTATTATTATAAAAATC+CGG + chr5.2:17505376-17505395 MS.gene83481:intron 5.0%
!!! TTTTTATTAATTTTTTTCAA+AGG - chr5.2:17505499-17505518 None:intergenic 5.0%
ACTCTCATCGATCCAGAACC+CGG - chr5.2:17505398-17505417 None:intergenic 50.0%
AGTGCACGCTCATACCACTT+TGG - chr5.2:17506384-17506403 None:intergenic 50.0%
GCTTGCGTTCCTTACAAGAG+GGG - chr5.2:17504908-17504927 None:intergenic 50.0%
GGATGTTGTCGAGGTTGTCA+GGG + chr5.2:17506620-17506639 MS.gene83481:CDS 50.0%
GTGCTTGCGTTCCTTACAAG+AGG - chr5.2:17504910-17504929 None:intergenic 50.0%
TGGAAGTGGCAAAGCCAAAG+TGG + chr5.2:17506367-17506386 MS.gene83481:CDS 50.0%
! CCGTATGGTTGGTTACCTTG+AGG + chr5.2:17506476-17506495 MS.gene83481:CDS 50.0%
! GATTTGAGCACAGTGGTGGA+TGG + chr5.2:17506289-17506308 MS.gene83481:CDS 50.0%
!! GGTTCTGGATCGATGAGAGT+TGG + chr5.2:17505398-17505417 MS.gene83481:intron 50.0%
AGCATTCCTCCTACCATGCC+AGG - chr5.2:17506246-17506265 None:intergenic 55.0%
CCAAGGACGAGAGTTAAGGG+AGG + chr5.2:17506980-17506999 MS.gene83481:CDS 55.0%
CCTCCCTTAACTCTCGTCCT+TGG - chr5.2:17506983-17507002 None:intergenic 55.0%
GCATTCCTCCTACCATGCCA+GGG - chr5.2:17506245-17506264 None:intergenic 55.0%
GGGATGTTGTCGAGGTTGTC+AGG + chr5.2:17506619-17506638 MS.gene83481:CDS 55.0%
!! TTGCGCCGATTTGAGCACAG+TGG + chr5.2:17506282-17506301 MS.gene83481:CDS 55.0%
AGGGAGGCTGCTGCTCCAAT+TGG + chr5.2:17506996-17507015 MS.gene83481:CDS 60.0%
AGTAGCTGCTGTCCCTGGCA+TGG + chr5.2:17506230-17506249 MS.gene83481:CDS 60.0%
GAGACAGTAGCTGCTGTCCC+TGG + chr5.2:17506225-17506244 MS.gene83481:CDS 60.0%
!! CGCCGATTTGAGCACAGTGG+TGG + chr5.2:17506285-17506304 MS.gene83481:CDS 60.0%
CCCTGAGACGACGACGACGA+CGG - chr5.2:17504985-17505004 None:intergenic 65.0%
CCGTCGTCGTCGTCGTCTCA+GGG + chr5.2:17504982-17505001 MS.gene83481:CDS 65.0%
GCTGCTGTCCCTGGCATGGT+AGG + chr5.2:17506234-17506253 MS.gene83481:CDS 65.0%
GCTGTCCCTGGCATGGTAGG+AGG + chr5.2:17506237-17506256 MS.gene83481:CDS 65.0%
TCCGTCGTCGTCGTCGTCTC+AGG + chr5.2:17504981-17505000 MS.gene83481:CDS 65.0%
TCGTCGTCGTCGTCTCAGGG+TGG + chr5.2:17504985-17505004 MS.gene83481:CDS 65.0%
TCGTCGTCTCAGGGTGGTGC+TGG + chr5.2:17504991-17505010 MS.gene83481:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 17504826 17507028 17504826 ID=MS.gene83481
chr5.2 mRNA 17504826 17507028 17504826 ID=MS.gene83481.t1;Parent=MS.gene83481
chr5.2 exon 17504826 17505113 17504826 ID=MS.gene83481.t1.exon1;Parent=MS.gene83481.t1
chr5.2 CDS 17504826 17505113 17504826 ID=cds.MS.gene83481.t1;Parent=MS.gene83481.t1
chr5.2 exon 17505200 17505328 17505200 ID=MS.gene83481.t1.exon2;Parent=MS.gene83481.t1
chr5.2 CDS 17505200 17505328 17505200 ID=cds.MS.gene83481.t1;Parent=MS.gene83481.t1
chr5.2 exon 17506195 17506683 17506195 ID=MS.gene83481.t1.exon3;Parent=MS.gene83481.t1
chr5.2 CDS 17506195 17506683 17506195 ID=cds.MS.gene83481.t1;Parent=MS.gene83481.t1
chr5.2 exon 17506969 17507028 17506969 ID=MS.gene83481.t1.exon4;Parent=MS.gene83481.t1
chr5.2 CDS 17506969 17507028 17506969 ID=cds.MS.gene83481.t1;Parent=MS.gene83481.t1
Gene Sequence

>MS.gene83481

ATGTTGTTTGCAAAGAAGGGTTTATTAGGTGGTGAAGTTGGTGTTCCAAACAAATGGGGTTATTTGGTTAGATCAACAACCCCTCTTGTAAGGAACGCAAGCACTTTTACTGCTAATCTGTCAGATCAGAAGGACGACAAGACTGTCGACAAAACTCCGTCGTCGTCGTCGTCTCAGGGTGGTGCTGGTGATAACAAAGATGAAAAAGGGATTACCAGTTATTGGGGTGTTCAACCTTCTAAGATCACAAAACCTGATGGTACTGAATGGAAATGGAATTGCTTCAGGGTATGTTATTGCTATGTTACATCTTTTGATCTTGTTTTTTGAGAAAAATGATTTTTTTTTTTTAATGTGGATTTTGATTGTGACAGCCATGGGAGACATACAAAGCAGATGTTACGATTGATCTGACTAAACATCATAAACCAACAACTTTTCTGGACAAGATGGCTTATTGGACTGTTAAGAGTCTTAGGTATCCAACTGATCTCTTTTTTCAGGTAATGTTCTCTTTAATTGATATTGTGAGTGTGATTTTTATTCATTATTATTATTATTATAAAAATCCGGGTTCTGGATCGATGAGAGTTGGATCTAGCAGAAGGGTTAGACTCCCACAATGTAGCGAACCATCGAATCTTTATTAGAAGAGGTGCTATCATTACCTCCTTTGAAAAAAATTAATAAAAAAATGGATTCCAGGAATTACTGGTGTGATTTTGTGAGTTTGTATTTATATATTTTATTTATTTTATGGTCAGGGTTTTATTAATTATATCAGCACTTATTATTTTAAGAGTATATATAAAAAAATGAAATTGTATTTTTTGTCAAAATAGAATGAAATTGTATTTAAAATTTTTAAATCAGTTACATGAAATGGGAAGTTAAATAATGATCCAATGTTTTATACTGTATGGTAAAAATAAAAATCCACCACAGAATGATGACCTTTTGTTTTGAAAAAATCCACCACAAGATGGTGCTTTTTACCTTTTGGTTTGAAAAGAAATCCACTTGCTAGCTATTATTGTTATTTCCTCTAAAAAACAATATAATTGACATGTTAATTAGCACTTAGTCTTAACACTTTTCATTTGAAAATAAAAAATTGCTTAAACTGGTCTTCTGTAAGAAATCATTTCATATGAGAGTTGTAAAGTGTCAGTATTATTTTATATTGAAATATCAATCTATCATCTCCCTAATAAGAATGAAATTTGAATTGAATTTTATAGTAATATGTTCTCCCCTTGATGAACTTACTATCCTATAAATTATGTTCAAAGTTTCTTTTAGTTACTAACACCAAGATCAAAAGTATTTTATGTAATTTCTAACTTAAAGTTGTATTTAATTGAAACAGAGAAGGTATGGATGCCGAGCAATGATGCTTGAGACAGTAGCTGCTGTCCCTGGCATGGTAGGAGGAATGCTGCTTCACTGCAAATCATTGCGCCGATTTGAGCACAGTGGTGGATGGATCAAAGCTTTGCTAGAAGAAGCAGAGAACGAGCGCATGCACCTGATGACTTTCATGGAAGTGGCAAAGCCAAAGTGGTATGAGCGTGCACTTGTCATAACTGTCCAGGGTGTTTTCTTCAATGCTTATTTCTTAGGCTATTTGCTCTCACCCAAATTTGCACACCGTATGGTTGGTTACCTTGAGGAAGAAGCTATTCACTCATACACTGAGTTTCTCAAGGAGCTTGACAAGGGTAATATTGAAAATGTTCCTGCTCCAGCTATTGCTATTGACTATTGGCAGCTTCCTCAAAACTCTACTTTAAGGGATGTTGTCGAGGTTGTCAGGGCTGATGAAGCACATCATCGCGATGTTAACCACTTTGCATCGGTATGTTGTCTATCCCTTTGTCTCACTCTTGCGCAATCTATCCATTTATTTATCTATAAGCTACAAATTCAAGAGGCAGCTAGACGCATGTCCATGATCTGTCTTTTTATTATGATTCAGAGTGTATAAAGTACACATTTCTCAAACTGTGACATAGATAAGTCTTTATACATTCAAAACCATAGTTGTGTCTTTTTAGAAATGGAAAAAATCTTAGATCCTTCATCTGAGTATTTTGAATGGGATTCAAGAACACTGATTGTGTTTTCATGTAATGAATTGCAGGATATACATTACCAAGGACGAGAGTTAAGGGAGGCTGCTGCTCCAATTGGTTATCACTAG
Protein sequence

>MS.gene83481.t1

MLFAKKGLLGGEVGVPNKWGYLVRSTTPLVRNASTFTANLSDQKDDKTVDKTPSSSSSQGGAGDNKDEKGITSYWGVQPSKITKPDGTEWKWNCFRPWETYKADVTIDLTKHHKPTTFLDKMAYWTVKSLRYPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPQNSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH