Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72816.t1 | AGQ42774.1 | 97.6 | 336 | 3 | 3 | 1 | 332 | 1 | 335 | 9.10E-188 | 666 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72816.t1 | Q39219 | 81.0 | 311 | 55 | 2 | 26 | 332 | 44 | 354 | 3.7e-145 | 515.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72816.t1 | S5FNL5 | 97.6 | 336 | 3 | 3 | 1 | 332 | 1 | 335 | 6.6e-188 | 666.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72816 | MS.gene90178 | PPI |
| MS.gene72816 | MS.gene028441 | PPI |
| MS.gene72816 | MS.gene35020 | PPI |
| MS.gene72816 | MS.gene70368 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72816.t1 | MTR_5g026620 | 96.988 | 332 | 8 | 2 | 1 | 332 | 1 | 330 | 0.0 | 672 |
| MS.gene72816.t1 | MTR_5g026620 | 98.667 | 225 | 3 | 0 | 108 | 332 | 38 | 262 | 2.48e-169 | 471 |
| MS.gene72816.t1 | MTR_4g094222 | 75.600 | 250 | 61 | 0 | 83 | 332 | 96 | 345 | 1.04e-149 | 425 |
| MS.gene72816.t1 | MTR_5g070680 | 67.424 | 264 | 86 | 0 | 69 | 332 | 60 | 323 | 8.04e-140 | 399 |
| MS.gene72816.t1 | MTR_5g070870 | 70.518 | 251 | 74 | 0 | 82 | 332 | 74 | 324 | 3.88e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72816.t1 | AT3G22370 | 81.029 | 311 | 55 | 2 | 26 | 332 | 44 | 354 | 0.0 | 525 |
| MS.gene72816.t1 | AT3G22360 | 84.502 | 271 | 40 | 1 | 64 | 332 | 55 | 325 | 1.29e-175 | 489 |
| MS.gene72816.t1 | AT3G27620 | 82.528 | 269 | 39 | 1 | 72 | 332 | 61 | 329 | 4.86e-169 | 473 |
| MS.gene72816.t1 | AT1G32350 | 69.751 | 281 | 77 | 1 | 60 | 332 | 38 | 318 | 1.13e-154 | 436 |
| MS.gene72816.t1 | AT5G64210 | 69.643 | 280 | 76 | 3 | 55 | 332 | 81 | 353 | 9.57e-148 | 420 |
| MS.gene72816.t1 | AT1G32350 | 69.847 | 262 | 71 | 1 | 60 | 313 | 38 | 299 | 1.46e-143 | 408 |
Find 85 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATACGGTGTGCAAATT+TGG | 0.112313 | 5.1:+17351715 | None:intergenic |
| TTCCTCAAAACTCTACTTTA+AGG | 0.145682 | 5.1:-17351580 | MS.gene72816:CDS |
| TTCTGGACAAGATGGCTTAT+TGG | 0.228191 | 5.1:-17353077 | MS.gene72816:CDS |
| TCCAAACAAATGGGGTTATT+TGG | 0.231356 | 5.1:-17353476 | MS.gene72816:CDS |
| TTCTTCAATGCTTATTTCTT+AGG | 0.252741 | 5.1:-17351752 | MS.gene72816:CDS |
| ATTGGACTGTTAAGAGTCTT+AGG | 0.253076 | 5.1:-17353059 | MS.gene72816:CDS |
| ACCAAATAACCCCATTTGTT+TGG | 0.264764 | 5.1:+17353475 | None:intergenic |
| GGTGATAACAAAGATGAAAA+AGG | 0.272034 | 5.1:-17353337 | MS.gene72816:CDS |
| AAAAGGGATTACGAGTTATT+GGG | 0.318703 | 5.1:-17353320 | MS.gene72816:CDS |
| TTTGCAAAGAAGGGTTTATT+AGG | 0.324829 | 5.1:-17353514 | MS.gene72816:CDS |
| AATGGAAATGGAATTGCTTC+AGG | 0.325465 | 5.1:-17353258 | MS.gene72816:CDS |
| AACTCCGTCGTCATCGTCTC+AGG | 0.333886 | 5.1:-17353368 | MS.gene72816:CDS |
| CCACTTCCATGAAAGTCATT+AGG | 0.338652 | 5.1:+17351825 | None:intergenic |
| TGCAATGTTGTTTGCAAAGA+AGG | 0.355995 | 5.1:-17353524 | MS.gene72816:CDS |
| CAGCTATTGCTATTGACTAT+TGG | 0.356927 | 5.1:-17351607 | MS.gene72816:CDS |
| GGGATGTTGTCGAGGTTGTC+AGG | 0.363968 | 5.1:-17351559 | MS.gene72816:CDS |
| CATGCACCTAATGACTTTCA+TGG | 0.370912 | 5.1:-17351831 | MS.gene72816:CDS |
| ACCATACGGTGTGCAAATTT+GGG | 0.381391 | 5.1:+17351716 | None:intergenic |
| TCCTCAAAACTCTACTTTAA+GGG | 0.382420 | 5.1:-17351579 | MS.gene72816:CDS |
| GATCAACAACCCCTCTTGTA+AGG | 0.418814 | 5.1:-17353450 | MS.gene72816:CDS |
| GGTTTATTAGGTGGTGAAGT+TGG | 0.424159 | 5.1:-17353502 | MS.gene72816:CDS |
| AGGGAGGCTGCTGCTCCAAT+TGG | 0.436968 | 5.1:-17351182 | MS.gene72816:CDS |
| CATTTCCATTCAGTACCATC+TGG | 0.440119 | 5.1:+17353271 | None:intergenic |
| CAGATGGTACTGAATGGAAA+TGG | 0.440215 | 5.1:-17353270 | MS.gene72816:CDS |
| AAGTTGGTGTTCCAAACAAA+TGG | 0.440248 | 5.1:-17353486 | MS.gene72816:CDS |
| AGTTGGTGTTCCAAACAAAT+GGG | 0.442514 | 5.1:-17353485 | MS.gene72816:CDS |
| TCATCGTCTCAGGGTGGTGC+TGG | 0.444716 | 5.1:-17353358 | MS.gene72816:CDS |
| AGCATTCCTCCTACCATGCC+AGG | 0.449536 | 5.1:+17351935 | None:intergenic |
| ATTACCAAGGACGAGAGTTA+AGG | 0.452922 | 5.1:-17351202 | MS.gene72816:CDS |
| TTACCAAGGACGAGAGTTAA+GGG | 0.457110 | 5.1:-17351201 | MS.gene72816:CDS |
| TGCACTTGTCATAACTGTCC+AGG | 0.463520 | 5.1:-17351780 | MS.gene72816:CDS |
| ATCTTGTCCAGAAAAGTTGT+TGG | 0.465005 | 5.1:+17353087 | None:intergenic |
| GGTATCTAGTGATAACCAAT+TGG | 0.473206 | 5.1:+17351167 | None:intergenic |
| GAGACAGTAGCTGCTGTCCC+TGG | 0.491184 | 5.1:-17351953 | MS.gene72816:CDS |
| ATCCACCACTGTGCTCAAAT+CGG | 0.492142 | 5.1:+17351891 | None:intergenic |
| GCTGCTGTCCCTGGCATGGT+AGG | 0.504751 | 5.1:-17351944 | MS.gene72816:CDS |
| TCAATAGCAATAGCTGGAGC+AGG | 0.506103 | 5.1:+17351614 | None:intergenic |
| TGCTAATCTGTCAGATCAGA+AGG | 0.510439 | 5.1:-17353410 | MS.gene72816:CDS |
| ACCCAAATTTGCACACCGTA+TGG | 0.511597 | 5.1:-17351717 | MS.gene72816:CDS |
| CCTAATGACTTTCATGGAAG+TGG | 0.513462 | 5.1:-17351825 | MS.gene72816:CDS |
| ATGGAAATGGAATTGCTTCA+GGG | 0.515778 | 5.1:-17353257 | MS.gene72816:intron |
| TAATTGAAACAGAGAAGGTA+TGG | 0.517621 | 5.1:-17351995 | MS.gene72816:intron |
| TACTTTAAGGGATGTTGTCG+AGG | 0.527952 | 5.1:-17351567 | MS.gene72816:CDS |
| GCAATGTTGTTTGCAAAGAA+GGG | 0.531437 | 5.1:-17353523 | MS.gene72816:CDS |
| CCTCCCTTAACTCTCGTCCT+TGG | 0.532033 | 5.1:+17351198 | None:intergenic |
| CAAAACCAGATGGTACTGAA+TGG | 0.540728 | 5.1:-17353276 | MS.gene72816:CDS |
| GGATGTTGTCGAGGTTGTCA+GGG | 0.547504 | 5.1:-17351558 | MS.gene72816:CDS |
| GCAAAGAAGGGTTTATTAGG+TGG | 0.547710 | 5.1:-17353511 | MS.gene72816:CDS |
| AAAGGGATTACGAGTTATTG+GGG | 0.549336 | 5.1:-17353319 | MS.gene72816:CDS |
| GCTGTCCCTGGCATGGTAGG+AGG | 0.556200 | 5.1:-17351941 | MS.gene72816:CDS |
| CTGTCTCAAGCATCATTGCT+CGG | 0.558637 | 5.1:+17351969 | None:intergenic |
| AGTGCACGCTCATACCACTT+TGG | 0.562854 | 5.1:+17351797 | None:intergenic |
| AAATTTGCACACCGTATGGT+TGG | 0.563076 | 5.1:-17351713 | MS.gene72816:CDS |
| GTTTCTCAAGGAGCTTGACA+AGG | 0.563279 | 5.1:-17351654 | MS.gene72816:CDS |
| CTCATACACTGAGTTTCTCA+AGG | 0.566793 | 5.1:-17351666 | MS.gene72816:CDS |
| CAATAGTCAATAGCAATAGC+TGG | 0.570433 | 5.1:+17351608 | None:intergenic |
| TGCTTGCGTTCCTTACAAGA+GGG | 0.572460 | 5.1:+17353440 | None:intergenic |
| TCTGCTTTGTATGTCTCCCA+TGG | 0.581364 | 5.1:+17353141 | None:intergenic |
| CGCCGATTTGAGCACAGTGG+TGG | 0.585049 | 5.1:-17351893 | MS.gene72816:CDS |
| GATTTGAGCACAGTGGTGGA+TGG | 0.585457 | 5.1:-17351889 | MS.gene72816:CDS |
| ACTCCGTCGTCATCGTCTCA+GGG | 0.586019 | 5.1:-17353367 | MS.gene72816:CDS |
| AGTGAATAGCTTCTTCCTCA+AGG | 0.587319 | 5.1:+17351687 | None:intergenic |
| GTGCTTGCGTTCCTTACAAG+AGG | 0.587389 | 5.1:+17353439 | None:intergenic |
| AGTAGCTGCTGTCCCTGGCA+TGG | 0.598186 | 5.1:-17351948 | MS.gene72816:CDS |
| CAATAGCAATAGCTGGAGCA+GGG | 0.618562 | 5.1:+17351615 | None:intergenic |
| CGATGTTAACCACTTTGCAT+CGG | 0.619490 | 5.1:-17351516 | MS.gene72816:intron |
| GCACTTGTCATAACTGTCCA+GGG | 0.622780 | 5.1:-17351779 | MS.gene72816:CDS |
| CCTCAAGGTAACCAACCATA+CGG | 0.624191 | 5.1:+17351702 | None:intergenic |
| TCCGATCAAAGATGATGATG+AGG | 0.630911 | 5.1:-17353567 | None:intergenic |
| TGGAAGTGGCAAAGCCAAAG+TGG | 0.631195 | 5.1:-17351811 | MS.gene72816:CDS |
| GCTTGCGTTCCTTACAAGAG+GGG | 0.632754 | 5.1:+17353441 | None:intergenic |
| GACAACATACCGATGCAAAG+TGG | 0.644093 | 5.1:+17351507 | None:intergenic |
| TCTAAGATCACAAAACCAGA+TGG | 0.647284 | 5.1:-17353286 | MS.gene72816:CDS |
| CCGTATGGTTGGTTACCTTG+AGG | 0.649479 | 5.1:-17351702 | MS.gene72816:CDS |
| GCATTCCTCCTACCATGCCA+GGG | 0.651988 | 5.1:+17351936 | None:intergenic |
| TTTCTCAAGGAGCTTGACAA+GGG | 0.653346 | 5.1:-17351653 | MS.gene72816:CDS |
| TCAAAGATGATGATGAGGCA+CGG | 0.658727 | 5.1:-17353562 | None:intergenic |
| GTTGGTGTTCCAAACAAATG+GGG | 0.661779 | 5.1:-17353484 | MS.gene72816:CDS |
| AAGCATTGAAGAAAACACCC+TGG | 0.672042 | 5.1:+17351762 | None:intergenic |
| TTGCAGGATATACATTACCA+AGG | 0.701646 | 5.1:-17351215 | MS.gene72816:intron |
| CCGTCGTCATCGTCTCAGGG+TGG | 0.702765 | 5.1:-17353364 | MS.gene72816:CDS |
| CCACCCTGAGACGATGACGA+CGG | 0.716194 | 5.1:+17353364 | None:intergenic |
| CCAAGGACGAGAGTTAAGGG+AGG | 0.747025 | 5.1:-17351198 | MS.gene72816:CDS |
| TTGCGCCGATTTGAGCACAG+TGG | 0.750440 | 5.1:-17351896 | MS.gene72816:CDS |
| AAGATGATGATGAGGCACGG+TGG | 0.820663 | 5.1:-17353559 | MS.gene72816:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTATTTATTTTA+TGG | - | chr5.1:17351955-17351974 | MS.gene72816:CDS | 0.0% |
| !! | GAAAAAAATTAACAAAAAAA+TGG | - | chr5.1:17351893-17351912 | MS.gene72816:CDS | 10.0% |
| !! | TATTATTATTATAAAAATCC+GGG | - | chr5.1:17351764-17351783 | MS.gene72816:CDS | 10.0% |
| !!! | AAATGATTTTTTTTTTAATG+TGG | - | chr5.1:17351548-17351567 | MS.gene72816:CDS | 10.0% |
| !!! | TTTTTGTTAATTTTTTTCAA+AGG | + | chr5.1:17351891-17351910 | None:intergenic | 10.0% |
| !! | AAACTTTGAACATAATTTAT+AGG | + | chr5.1:17352652-17352671 | None:intergenic | 15.0% |
| !! | AAATAAAAAATTGCTTAAAC+TGG | - | chr5.1:17352481-17352500 | MS.gene72816:intron | 15.0% |
| !! | ATTCAAATTTCATTCTTATT+AGG | + | chr5.1:17352586-17352605 | None:intergenic | 15.0% |
| !! | TTCAAATTTCATTCTTATTA+GGG | + | chr5.1:17352585-17352604 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATTTTATGGTC+AGG | - | chr5.1:17351960-17351979 | MS.gene72816:CDS | 15.0% |
| !!! | CAATTATATTGTTTTTTTAG+AGG | + | chr5.1:17352421-17352440 | None:intergenic | 15.0% |
| !!! | TTTTATTTATTTTATGGTCA+GGG | - | chr5.1:17351961-17351980 | MS.gene72816:CDS | 15.0% |
| !! | AAACCTAATTAAAGATATGA+TGG | + | chr5.1:17352142-17352161 | None:intergenic | 20.0% |
| !! | GTAGCTTATAGATAAATAAA+TGG | + | chr5.1:17353278-17353297 | None:intergenic | 20.0% |
| !! | TTATGCATGATTGAATATTT+AGG | + | chr5.1:17352176-17352195 | None:intergenic | 20.0% |
| !!! | ACATAAAATACTTTTGATCT+TGG | + | chr5.1:17352691-17352710 | None:intergenic | 20.0% |
| !!! | TTAACAAAAAAATGGATTTC+AGG | - | chr5.1:17351901-17351920 | MS.gene72816:CDS | 20.0% |
| !!! | TTGTTAATTTTTTTCAAAGG+AGG | + | chr5.1:17351888-17351907 | None:intergenic | 20.0% |
| ! | CATAATAAAAAGACAGATCA+TGG | + | chr5.1:17353328-17353347 | None:intergenic | 25.0% |
| ! | GTATTTAATTGAAACAGAGA+AGG | - | chr5.1:17352728-17352747 | MS.gene72816:intron | 25.0% |
| ! | GTGATAACAAAGATGAAAAA+GGG | - | chr5.1:17351392-17351411 | MS.gene72816:intron | 25.0% |
| ! | TACCATACAGTATAAAACAT+TGG | + | chr5.1:17352281-17352300 | None:intergenic | 25.0% |
| !! | ATCCAATGTTTTATACTGTA+TGG | - | chr5.1:17352276-17352295 | MS.gene72816:intron | 25.0% |
| !! | TTCTTCAATGCTTATTTCTT+AGG | - | chr5.1:17352976-17352995 | MS.gene72816:intron | 25.0% |
| !! | TTTCTAAAAAGACACAACTA+TGG | + | chr5.1:17353416-17353435 | None:intergenic | 25.0% |
| !!! | AATTTTTTTCAAAGGAGGTA+AGG | + | chr5.1:17351883-17351902 | None:intergenic | 25.0% |
| !!! | GTGGATTTTTTCAAAACAAA+AGG | + | chr5.1:17352332-17352351 | None:intergenic | 25.0% |
| !!! | TAGTTGTGTCTTTTTAGAAA+TGG | - | chr5.1:17353416-17353435 | MS.gene72816:CDS | 25.0% |
| !!! | TTCATCTGAGTATTTTGAAT+GGG | - | chr5.1:17353455-17353474 | MS.gene72816:CDS | 25.0% |
| !!! | TTTTAAGGTACTTTTGTTCA+AGG | - | chr5.1:17352113-17352132 | MS.gene72816:intron | 25.0% |
| AAAAAGGGATTACGAGTTAT+TGG | - | chr5.1:17351407-17351426 | MS.gene72816:intron | 30.0% | |
| AAAAGGGATTACGAGTTATT+GGG | - | chr5.1:17351408-17351427 | MS.gene72816:intron | 30.0% | |
| ATAGGATAGTAAGTTCATCA+AGG | + | chr5.1:17352634-17352653 | None:intergenic | 30.0% | |
| CATCGAATCTTTATTAGAAG+AGG | - | chr5.1:17351846-17351865 | MS.gene72816:CDS | 30.0% | |
| CATTCAAAATACTCAGATGA+AGG | + | chr5.1:17353456-17353475 | None:intergenic | 30.0% | |
| CCTAATTAAAGATATGATGG+CGG | + | chr5.1:17352139-17352158 | None:intergenic | 30.0% | |
| CTATAAGCTACAAATTCAAG+AGG | - | chr5.1:17353287-17353306 | MS.gene72816:CDS | 30.0% | |
| CTCTTCTAATAAAGATTCGA+TGG | + | chr5.1:17351848-17351867 | None:intergenic | 30.0% | |
| GGTGATAACAAAGATGAAAA+AGG | - | chr5.1:17351391-17351410 | MS.gene72816:intron | 30.0% | |
| TAACAATAATAGCTAGCAAG+TGG | + | chr5.1:17352395-17352414 | None:intergenic | 30.0% | |
| TAATTGAAACAGAGAAGGTA+TGG | - | chr5.1:17352733-17352752 | MS.gene72816:intron | 30.0% | |
| TAGGATAGTAAGTTCATCAA+GGG | + | chr5.1:17352633-17352652 | None:intergenic | 30.0% | |
| TATTATAAAAATCCGGGTTC+TGG | - | chr5.1:17351770-17351789 | MS.gene72816:CDS | 30.0% | |
| TCCTCAAAACTCTACTTTAA+GGG | - | chr5.1:17353149-17353168 | MS.gene72816:intron | 30.0% | |
| TTCCTCAAAACTCTACTTTA+AGG | - | chr5.1:17353148-17353167 | MS.gene72816:intron | 30.0% | |
| TTTGCAAAGAAGGGTTTATT+AGG | - | chr5.1:17351214-17351233 | MS.gene72816:intron | 30.0% | |
| ! | AAATGGATTTCAGGAATTAC+TGG | - | chr5.1:17351910-17351929 | MS.gene72816:CDS | 30.0% |
| ! | AAGTACCTTAAAACCTTTTC+AGG | + | chr5.1:17352106-17352125 | None:intergenic | 30.0% |
| ! | GGATTTCTTTTCAAACCAAA+AGG | + | chr5.1:17352374-17352393 | None:intergenic | 30.0% |
| ! | GTTTTCATGTAATGAATTGC+AGG | - | chr5.1:17353497-17353516 | MS.gene72816:CDS | 30.0% |
| ! | TAACTCCTGAAAAGGTTTTA+AGG | - | chr5.1:17352098-17352117 | MS.gene72816:intron | 30.0% |
| ! | TCATAAACCAACAACTTTTC+TGG | - | chr5.1:17351634-17351653 | MS.gene72816:CDS | 30.0% |
| !! | CTTCATCTGAGTATTTTGAA+TGG | - | chr5.1:17353454-17353473 | MS.gene72816:CDS | 30.0% |
| !! | TTAAAACCTTTTCAGGAGTT+AGG | + | chr5.1:17352099-17352118 | None:intergenic | 30.0% |
| AAAGGGATTACGAGTTATTG+GGG | - | chr5.1:17351409-17351428 | MS.gene72816:intron | 35.0% | |
| AACAAAAGGTCATCATTCTG+TGG | + | chr5.1:17352318-17352337 | None:intergenic | 35.0% | |
| AATGGAAATGGAATTGCTTC+AGG | - | chr5.1:17351470-17351489 | MS.gene72816:intron | 35.0% | |
| ACCAAATAACCCCATTTGTT+TGG | + | chr5.1:17351256-17351275 | None:intergenic | 35.0% | |
| ACCTGAAAAAAGAGATCAGT+TGG | + | chr5.1:17351698-17351717 | None:intergenic | 35.0% | |
| AGGATAGTAAGTTCATCAAG+GGG | + | chr5.1:17352632-17352651 | None:intergenic | 35.0% | |
| ATCTTGTCCAGAAAAGTTGT+TGG | + | chr5.1:17351644-17351663 | None:intergenic | 35.0% | |
| ATGGAAATGGAATTGCTTCA+GGG | - | chr5.1:17351471-17351490 | MS.gene72816:intron | 35.0% | |
| ATTGGACTGTTAAGAGTCTT+AGG | - | chr5.1:17351669-17351688 | MS.gene72816:CDS | 35.0% | |
| CAATAGTCAATAGCAATAGC+TGG | + | chr5.1:17353123-17353142 | None:intergenic | 35.0% | |
| CCGCCATCATATCTTTAATT+AGG | - | chr5.1:17352136-17352155 | MS.gene72816:intron | 35.0% | |
| GTCAGTTGGTTACATGAAAT+GGG | - | chr5.1:17352240-17352259 | MS.gene72816:intron | 35.0% | |
| TCCAAACAAATGGGGTTATT+TGG | - | chr5.1:17351252-17351271 | MS.gene72816:intron | 35.0% | |
| TGAAAAAATCCACCACAAGA+TGG | - | chr5.1:17352339-17352358 | MS.gene72816:intron | 35.0% | |
| TGCATAATGCATGTGATGTT+TGG | - | chr5.1:17352189-17352208 | MS.gene72816:intron | 35.0% | |
| TTGCAGGATATACATTACCA+AGG | - | chr5.1:17353513-17353532 | MS.gene72816:CDS | 35.0% | |
| ! | AACAACTTTTCTGGACAAGA+TGG | - | chr5.1:17351643-17351662 | MS.gene72816:CDS | 35.0% |
| ! | AGTTGGTGTTCCAAACAAAT+GGG | - | chr5.1:17351243-17351262 | MS.gene72816:intron | 35.0% |
| ! | CAGCTATTGCTATTGACTAT+TGG | - | chr5.1:17353121-17353140 | MS.gene72816:CDS | 35.0% |
| ! | GCAATGTTGTTTGCAAAGAA+GGG | - | chr5.1:17351205-17351224 | MS.gene72816:CDS | 35.0% |
| ! | TCCCTTAAAGTAGAGTTTTG+AGG | + | chr5.1:17353153-17353172 | None:intergenic | 35.0% |
| ! | TCTAAGATCACAAAACCAGA+TGG | - | chr5.1:17351442-17351461 | MS.gene72816:intron | 35.0% |
| ! | TGCAATGTTGTTTGCAAAGA+AGG | - | chr5.1:17351204-17351223 | MS.gene72816:CDS | 35.0% |
| !! | AAGTTGGTGTTCCAAACAAA+TGG | - | chr5.1:17351242-17351261 | MS.gene72816:intron | 35.0% |
| !! | AGATGGTGCTTTTTACCTTT+TGG | - | chr5.1:17352356-17352375 | MS.gene72816:intron | 35.0% |
| !!! | ATTTTGATTGTGACAGCCAT+GGG | - | chr5.1:17351571-17351590 | MS.gene72816:CDS | 35.0% |
| !!! | TCCAACTGATCTCTTTTTTC+AGG | - | chr5.1:17351694-17351713 | MS.gene72816:CDS | 35.0% |
| !!! | TCTGGTTTTGTGATCTTAGA+AGG | + | chr5.1:17351442-17351461 | None:intergenic | 35.0% |
| AAAAGGTCATCATTCTGTGG+TGG | + | chr5.1:17352315-17352334 | None:intergenic | 40.0% | |
| AAATTTGCACACCGTATGGT+TGG | - | chr5.1:17353015-17353034 | MS.gene72816:intron | 40.0% | |
| AACCATACGGTGTGCAAATT+TGG | + | chr5.1:17353016-17353035 | None:intergenic | 40.0% | |
| ACCATACGGTGTGCAAATTT+GGG | + | chr5.1:17353015-17353034 | None:intergenic | 40.0% | |
| AGTGAATAGCTTCTTCCTCA+AGG | + | chr5.1:17353044-17353063 | None:intergenic | 40.0% | |
| ATTACCAAGGACGAGAGTTA+AGG | - | chr5.1:17353526-17353545 | MS.gene72816:CDS | 40.0% | |
| CATGCACCTAATGACTTTCA+TGG | - | chr5.1:17352897-17352916 | MS.gene72816:intron | 40.0% | |
| CATTTCCATTCAGTACCATC+TGG | + | chr5.1:17351460-17351479 | None:intergenic | 40.0% | |
| CCACTTCCATGAAAGTCATT+AGG | + | chr5.1:17352906-17352925 | None:intergenic | 40.0% | |
| CCTAATGACTTTCATGGAAG+TGG | - | chr5.1:17352903-17352922 | MS.gene72816:intron | 40.0% | |
| CGATGTTAACCACTTTGCAT+CGG | - | chr5.1:17353212-17353231 | MS.gene72816:intron | 40.0% | |
| CTCATACACTGAGTTTCTCA+AGG | - | chr5.1:17353062-17353081 | MS.gene72816:CDS | 40.0% | |
| GCAAAGAAGGGTTTATTAGG+TGG | - | chr5.1:17351217-17351236 | MS.gene72816:intron | 40.0% | |
| GGTCAGTTGGTTACATGAAA+TGG | - | chr5.1:17352239-17352258 | MS.gene72816:intron | 40.0% | |
| GGTTTATTAGGTGGTGAAGT+TGG | - | chr5.1:17351226-17351245 | MS.gene72816:intron | 40.0% | |
| GTTACACCTAACTCCTGAAA+AGG | - | chr5.1:17352090-17352109 | MS.gene72816:intron | 40.0% | |
| TGCTAATCTGTCAGATCAGA+AGG | - | chr5.1:17351318-17351337 | MS.gene72816:intron | 40.0% | |
| TTACCAAGGACGAGAGTTAA+GGG | - | chr5.1:17353527-17353546 | MS.gene72816:CDS | 40.0% | |
| TTCTGGACAAGATGGCTTAT+TGG | - | chr5.1:17351651-17351670 | MS.gene72816:CDS | 40.0% | |
| TTGTTTGGATGCATGTGCTT+TGG | - | chr5.1:17352213-17352232 | MS.gene72816:intron | 40.0% | |
| TTTCTCAAGGAGCTTGACAA+GGG | - | chr5.1:17353075-17353094 | MS.gene72816:CDS | 40.0% | |
| ! | CAAAACCAGATGGTACTGAA+TGG | - | chr5.1:17351452-17351471 | MS.gene72816:intron | 40.0% |
| ! | CAGATGGTACTGAATGGAAA+TGG | - | chr5.1:17351458-17351477 | MS.gene72816:intron | 40.0% |
| ! | GTTGGTGTTCCAAACAAATG+GGG | - | chr5.1:17351244-17351263 | MS.gene72816:intron | 40.0% |
| ! | TACTTTAAGGGATGTTGTCG+AGG | - | chr5.1:17353161-17353180 | MS.gene72816:intron | 40.0% |
| !! | AAGCATTGAAGAAAACACCC+TGG | + | chr5.1:17352969-17352988 | None:intergenic | 40.0% |
| !! | AGGTAAAAAGCACCATCTTG+TGG | + | chr5.1:17352354-17352373 | None:intergenic | 40.0% |
| !! | CATGTGATGTTTGGCTTGTT+TGG | - | chr5.1:17352198-17352217 | MS.gene72816:intron | 40.0% |
| !! | TAAAAAGCACCATCTTGTGG+TGG | + | chr5.1:17352351-17352370 | None:intergenic | 40.0% |
| !!! | GATTTTGATTGTGACAGCCA+TGG | - | chr5.1:17351570-17351589 | MS.gene72816:CDS | 40.0% |
| ACCCAAATTTGCACACCGTA+TGG | - | chr5.1:17353011-17353030 | MS.gene72816:intron | 45.0% | |
| ATCCACCACTGTGCTCAAAT+CGG | + | chr5.1:17352840-17352859 | None:intergenic | 45.0% | |
| ATTGCGCAAGAGTGAGACAA+AGG | + | chr5.1:17353251-17353270 | None:intergenic | 45.0% | |
| CAATAGCAATAGCTGGAGCA+GGG | + | chr5.1:17353116-17353135 | None:intergenic | 45.0% | |
| CCTCAAGGTAACCAACCATA+CGG | + | chr5.1:17353029-17353048 | None:intergenic | 45.0% | |
| CTGTCTCAAGCATCATTGCT+CGG | + | chr5.1:17352762-17352781 | None:intergenic | 45.0% | |
| GACAACATACCGATGCAAAG+TGG | + | chr5.1:17353224-17353243 | None:intergenic | 45.0% | |
| GAGAGTTGGATCTAGCAGAA+GGG | - | chr5.1:17351799-17351818 | MS.gene72816:CDS | 45.0% | |
| GATCAACAACCCCTCTTGTA+AGG | - | chr5.1:17351278-17351297 | MS.gene72816:intron | 45.0% | |
| GCACTTGTCATAACTGTCCA+GGG | - | chr5.1:17352949-17352968 | MS.gene72816:intron | 45.0% | |
| GTTTCTCAAGGAGCTTGACA+AGG | - | chr5.1:17353074-17353093 | MS.gene72816:CDS | 45.0% | |
| TCAATAGCAATAGCTGGAGC+AGG | + | chr5.1:17353117-17353136 | None:intergenic | 45.0% | |
| TCGATGGTTCGCTACATTGT+GGG | + | chr5.1:17351832-17351851 | None:intergenic | 45.0% | |
| TCTGCTTTGTATGTCTCCCA+TGG | + | chr5.1:17351590-17351609 | None:intergenic | 45.0% | |
| TGAGAGTTGGATCTAGCAGA+AGG | - | chr5.1:17351798-17351817 | MS.gene72816:CDS | 45.0% | |
| TGCACTTGTCATAACTGTCC+AGG | - | chr5.1:17352948-17352967 | MS.gene72816:intron | 45.0% | |
| TGCTTGCGTTCCTTACAAGA+GGG | + | chr5.1:17351291-17351310 | None:intergenic | 45.0% | |
| TGGATGCATGTGCTTTGGTA+AGG | - | chr5.1:17352218-17352237 | MS.gene72816:intron | 45.0% | |
| TGTGCTTTGGTAAGGTCAGT+TGG | - | chr5.1:17352226-17352245 | MS.gene72816:intron | 45.0% | |
| TTCGATGGTTCGCTACATTG+TGG | + | chr5.1:17351833-17351852 | None:intergenic | 45.0% | |
| TTGCGCAAGAGTGAGACAAA+GGG | + | chr5.1:17353250-17353269 | None:intergenic | 45.0% | |
| !! | TTATTATTATTATAAAAATC+CGG | - | chr5.1:17351763-17351782 | MS.gene72816:CDS | 5.0% |
| ACTCTCATCGATCCAGAACC+CGG | + | chr5.1:17351785-17351804 | None:intergenic | 50.0% | |
| AGTGCACGCTCATACCACTT+TGG | + | chr5.1:17352934-17352953 | None:intergenic | 50.0% | |
| GCTTGCGTTCCTTACAAGAG+GGG | + | chr5.1:17351290-17351309 | None:intergenic | 50.0% | |
| GGATGTTGTCGAGGTTGTCA+GGG | - | chr5.1:17353170-17353189 | MS.gene72816:intron | 50.0% | |
| GTGCTTGCGTTCCTTACAAG+AGG | + | chr5.1:17351292-17351311 | None:intergenic | 50.0% | |
| TGGAAGTGGCAAAGCCAAAG+TGG | - | chr5.1:17352917-17352936 | MS.gene72816:intron | 50.0% | |
| ! | CCGTATGGTTGGTTACCTTG+AGG | - | chr5.1:17353026-17353045 | MS.gene72816:intron | 50.0% |
| ! | GATTTGAGCACAGTGGTGGA+TGG | - | chr5.1:17352839-17352858 | MS.gene72816:intron | 50.0% |
| !! | GGTTCTGGATCGATGAGAGT+TGG | - | chr5.1:17351785-17351804 | MS.gene72816:CDS | 50.0% |
| AACTCCGTCGTCATCGTCTC+AGG | - | chr5.1:17351360-17351379 | MS.gene72816:intron | 55.0% | |
| ACTCCGTCGTCATCGTCTCA+GGG | - | chr5.1:17351361-17351380 | MS.gene72816:intron | 55.0% | |
| AGCATTCCTCCTACCATGCC+AGG | + | chr5.1:17352796-17352815 | None:intergenic | 55.0% | |
| CCAAGGACGAGAGTTAAGGG+AGG | - | chr5.1:17353530-17353549 | MS.gene72816:CDS | 55.0% | |
| CCTCCCTTAACTCTCGTCCT+TGG | + | chr5.1:17353533-17353552 | None:intergenic | 55.0% | |
| GCATTCCTCCTACCATGCCA+GGG | + | chr5.1:17352795-17352814 | None:intergenic | 55.0% | |
| GGGATGTTGTCGAGGTTGTC+AGG | - | chr5.1:17353169-17353188 | MS.gene72816:intron | 55.0% | |
| !! | TTGCGCCGATTTGAGCACAG+TGG | - | chr5.1:17352832-17352851 | MS.gene72816:intron | 55.0% |
| AGGGAGGCTGCTGCTCCAAT+TGG | - | chr5.1:17353546-17353565 | MS.gene72816:CDS | 60.0% | |
| AGTAGCTGCTGTCCCTGGCA+TGG | - | chr5.1:17352780-17352799 | MS.gene72816:intron | 60.0% | |
| CCACCCTGAGACGATGACGA+CGG | + | chr5.1:17351367-17351386 | None:intergenic | 60.0% | |
| GAGACAGTAGCTGCTGTCCC+TGG | - | chr5.1:17352775-17352794 | MS.gene72816:intron | 60.0% | |
| TCATCGTCTCAGGGTGGTGC+TGG | - | chr5.1:17351370-17351389 | MS.gene72816:intron | 60.0% | |
| !! | CGCCGATTTGAGCACAGTGG+TGG | - | chr5.1:17352835-17352854 | MS.gene72816:intron | 60.0% |
| CCGTCGTCATCGTCTCAGGG+TGG | - | chr5.1:17351364-17351383 | MS.gene72816:intron | 65.0% | |
| GCTGCTGTCCCTGGCATGGT+AGG | - | chr5.1:17352784-17352803 | MS.gene72816:intron | 65.0% | |
| GCTGTCCCTGGCATGGTAGG+AGG | - | chr5.1:17352787-17352806 | MS.gene72816:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17351172 | 17353578 | 17351172 | ID=MS.gene72816 |
| chr5.1 | mRNA | 17351172 | 17353578 | 17351172 | ID=MS.gene72816.t1;Parent=MS.gene72816 |
| chr5.1 | exon | 17353258 | 17353578 | 17353258 | ID=MS.gene72816.t1.exon1;Parent=MS.gene72816.t1 |
| chr5.1 | CDS | 17353258 | 17353578 | 17353258 | ID=cds.MS.gene72816.t1;Parent=MS.gene72816.t1 |
| chr5.1 | exon | 17353035 | 17353163 | 17353035 | ID=MS.gene72816.t1.exon2;Parent=MS.gene72816.t1 |
| chr5.1 | CDS | 17353035 | 17353163 | 17353035 | ID=cds.MS.gene72816.t1;Parent=MS.gene72816.t1 |
| chr5.1 | exon | 17351517 | 17352005 | 17351517 | ID=MS.gene72816.t1.exon3;Parent=MS.gene72816.t1 |
| chr5.1 | CDS | 17351517 | 17352005 | 17351517 | ID=cds.MS.gene72816.t1;Parent=MS.gene72816.t1 |
| chr5.1 | exon | 17351172 | 17351231 | 17351172 | ID=MS.gene72816.t1.exon4;Parent=MS.gene72816.t1 |
| chr5.1 | CDS | 17351172 | 17351231 | 17351172 | ID=cds.MS.gene72816.t1;Parent=MS.gene72816.t1 |
| Gene Sequence |
| Protein sequence |
