Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028529.t1 | XP_003608332.1 | 97.8 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 2.80E-170 | 607.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028529.t1 | O81884 | 78.2 | 316 | 69 | 0 | 1 | 316 | 4 | 319 | 3.4e-140 | 499.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028529.t1 | G7JTZ5 | 97.8 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 2.0e-170 | 607.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028529 | MS.gene061628 | PPI |
| MS.gene028529 | MS.gene53676 | PPI |
| MS.gene028529 | MS.gene96904 | PPI |
| MS.gene028529 | MS.gene062500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028529.t1 | MTR_4g092750 | 97.785 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 0.0 | 636 |
| MS.gene028529.t1 | MTR_4g092750 | 97.473 | 277 | 7 | 0 | 1 | 277 | 1 | 277 | 0.0 | 559 |
| MS.gene028529.t1 | MTR_4g092750 | 98.175 | 274 | 5 | 0 | 1 | 274 | 1 | 274 | 0.0 | 557 |
| MS.gene028529.t1 | MTR_7g114980 | 31.349 | 252 | 153 | 7 | 6 | 247 | 16 | 257 | 4.86e-23 | 97.1 |
| MS.gene028529.t1 | MTR_7g114970 | 29.885 | 261 | 161 | 7 | 5 | 259 | 11 | 255 | 4.88e-23 | 96.7 |
| MS.gene028529.t1 | MTR_7g114980 | 28.333 | 300 | 180 | 8 | 6 | 280 | 16 | 305 | 5.04e-23 | 97.8 |
| MS.gene028529.t1 | MTR_7g114970 | 29.885 | 261 | 161 | 7 | 5 | 259 | 11 | 255 | 5.80e-23 | 96.7 |
| MS.gene028529.t1 | MTR_7g114970 | 29.885 | 261 | 161 | 7 | 5 | 259 | 11 | 255 | 9.73e-23 | 97.1 |
| MS.gene028529.t1 | MTR_1g047250 | 26.948 | 308 | 187 | 11 | 1 | 280 | 1 | 298 | 2.72e-22 | 95.5 |
| MS.gene028529.t1 | MTR_7g114990 | 27.986 | 293 | 184 | 9 | 6 | 280 | 18 | 301 | 3.61e-21 | 92.8 |
| MS.gene028529.t1 | MTR_1g102750 | 27.969 | 261 | 165 | 8 | 5 | 258 | 9 | 253 | 7.98e-20 | 89.0 |
| MS.gene028529.t1 | MTR_7g114970 | 35.897 | 156 | 89 | 4 | 5 | 154 | 11 | 161 | 8.25e-20 | 86.3 |
| MS.gene028529.t1 | MTR_7g115010 | 30.488 | 246 | 142 | 8 | 6 | 249 | 14 | 232 | 8.95e-20 | 88.6 |
| MS.gene028529.t1 | MTR_1g102750 | 27.969 | 261 | 165 | 8 | 5 | 258 | 9 | 253 | 9.97e-20 | 88.2 |
| MS.gene028529.t1 | MTR_7g021850 | 30.556 | 216 | 136 | 7 | 5 | 215 | 8 | 214 | 6.79e-17 | 80.5 |
| MS.gene028529.t1 | MTR_7g021680 | 31.019 | 216 | 134 | 7 | 5 | 215 | 8 | 213 | 7.19e-17 | 80.5 |
| MS.gene028529.t1 | MTR_7g021820 | 31.019 | 216 | 134 | 7 | 5 | 215 | 8 | 213 | 7.19e-17 | 80.5 |
| MS.gene028529.t1 | MTR_8g088160 | 27.488 | 211 | 111 | 10 | 42 | 215 | 77 | 282 | 6.89e-13 | 68.6 |
| MS.gene028529.t1 | MTR_3g092140 | 24.917 | 301 | 183 | 13 | 11 | 280 | 44 | 332 | 1.27e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028529.t1 | AT4G33670 | 78.165 | 316 | 69 | 0 | 1 | 316 | 4 | 319 | 0.0 | 520 |
| MS.gene028529.t1 | AT1G04690 | 25.806 | 310 | 188 | 10 | 1 | 280 | 1 | 298 | 7.80e-22 | 94.4 |
| MS.gene028529.t1 | AT1G60750 | 32.407 | 216 | 131 | 5 | 5 | 214 | 12 | 218 | 1.43e-19 | 88.2 |
| MS.gene028529.t1 | AT1G60730 | 32.273 | 220 | 134 | 7 | 5 | 219 | 11 | 220 | 1.49e-18 | 85.5 |
| MS.gene028529.t1 | AT1G60680 | 31.222 | 221 | 136 | 6 | 5 | 219 | 11 | 221 | 3.80e-18 | 82.4 |
| MS.gene028529.t1 | AT1G60680 | 31.222 | 221 | 136 | 6 | 5 | 219 | 11 | 221 | 9.60e-18 | 83.2 |
| MS.gene028529.t1 | AT5G53580 | 27.181 | 298 | 180 | 13 | 11 | 280 | 45 | 333 | 1.78e-17 | 82.4 |
| MS.gene028529.t1 | AT1G60690 | 32.273 | 220 | 134 | 7 | 5 | 219 | 11 | 220 | 3.21e-17 | 81.6 |
| MS.gene028529.t1 | AT1G60710 | 30.455 | 220 | 138 | 7 | 5 | 219 | 11 | 220 | 1.31e-16 | 79.7 |
| MS.gene028529.t1 | AT1G60730 | 29.958 | 237 | 137 | 8 | 5 | 219 | 11 | 240 | 1.55e-15 | 76.6 |
Find 78 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTGCTTCCTTCAGTTTC+TGG | 0.033628 | 4.1:+20509401 | None:intergenic |
| CAGTGTCATGATATTGAATT+TGG | 0.090600 | 4.1:-20509595 | MS.gene028529:CDS |
| CTCGAAATTTGAAGATATTA+TGG | 0.250466 | 4.1:-20509802 | MS.gene028529:intron |
| GCAACTTATTGCAAAGAAAA+TGG | 0.252619 | 4.1:-20508250 | MS.gene028529:CDS |
| GCAAGAGAACTTGCAGCTTC+TGG | 0.255338 | 4.1:-20507024 | MS.gene028529:CDS |
| TATTTACTTATGTTCTTGAT+AGG | 0.294080 | 4.1:-20509339 | MS.gene028529:CDS |
| GCAGTACAGCTTGTTAAATA+AGG | 0.324806 | 4.1:-20508203 | MS.gene028529:CDS |
| GACTCGTTTCATTGGGATTA+CGG | 0.334830 | 4.1:-20509377 | MS.gene028529:CDS |
| TGGGATTACGGGACTTCCTT+TGG | 0.348113 | 4.1:-20509365 | MS.gene028529:CDS |
| GGTGAAGCAGGATGCCATTC+AGG | 0.355943 | 4.1:+20509160 | None:intergenic |
| ACTCGTTTCATTGGGATTAC+GGG | 0.365687 | 4.1:-20509376 | MS.gene028529:CDS |
| TCTCCTCTCGGAAACGTCTT+CGG | 0.379019 | 4.1:-20509971 | MS.gene028529:CDS |
| TCCTGCTTCACCGGAACTTA+AGG | 0.379403 | 4.1:-20509149 | MS.gene028529:intron |
| AAACTAAGCTCCGTCGGGTT+CGG | 0.379564 | 4.1:-20509998 | MS.gene028529:CDS |
| GCAGGGAAGACTCGTTTCAT+TGG | 0.381344 | 4.1:-20509385 | MS.gene028529:CDS |
| TCCTTCAGTTTCTGGAGTGC+AGG | 0.386056 | 4.1:+20509409 | None:intergenic |
| CAGTGCTTCTCCGTTGGCGA+TGG | 0.387532 | 4.1:-20509206 | MS.gene028529:CDS |
| CACAAGTGTAGACGAGAGTT+TGG | 0.388926 | 4.1:-20509650 | MS.gene028529:CDS |
| TTACGTGAACTTGGAAGAAC+TGG | 0.400346 | 4.1:-20510025 | MS.gene028529:CDS |
| CAGGGAAGACTCGTTTCATT+GGG | 0.402120 | 4.1:-20509384 | MS.gene028529:CDS |
| GCTACAATGTATTCACTTCT+CGG | 0.402496 | 4.1:+20509727 | None:intergenic |
| CTCTGTCAATGATTCGACTT+TGG | 0.415789 | 4.1:-20509272 | MS.gene028529:CDS |
| ATTGACAGAGTGATGGCAAT+AGG | 0.422905 | 4.1:+20509285 | None:intergenic |
| CAGCAAGGGGTCAACTCTGC+TGG | 0.427552 | 4.1:+20506926 | None:intergenic |
| ACCTTAAGTTCCGGTGAAGC+AGG | 0.436418 | 4.1:+20509148 | None:intergenic |
| ATGGGTCTTCTCACTGAGGC+TGG | 0.452747 | 4.1:-20509187 | MS.gene028529:CDS |
| GTTTGCTTGTTCTTCTGAAA+CGG | 0.454532 | 4.1:+20509946 | None:intergenic |
| CTGAGGCTGGCCCTCCTGAA+TGG | 0.457972 | 4.1:-20509174 | MS.gene028529:CDS |
| AACACCCTTGGACTTCAGAT+AGG | 0.459632 | 4.1:+20509237 | None:intergenic |
| CTCCAGAAACTGAAGGAAGC+AGG | 0.467577 | 4.1:-20509403 | MS.gene028529:CDS |
| AAAATGGAGTTACGTGAACT+TGG | 0.470953 | 4.1:-20510034 | MS.gene028529:CDS |
| TGAATTTGGATCGTTAGATC+AGG | 0.479668 | 4.1:-20509581 | MS.gene028529:intron |
| TAGGGTTCCGCCTGGAACAT+TGG | 0.482789 | 4.1:-20509320 | MS.gene028529:CDS |
| ATTTACTTATGTTCTTGATA+GGG | 0.486238 | 4.1:-20509338 | MS.gene028529:CDS |
| TGGCATGAGATCTGTCGAAC+AGG | 0.491310 | 4.1:-20508161 | MS.gene028529:intron |
| GGGTTCGGAGCTTCTCCTCT+CGG | 0.491973 | 4.1:-20509983 | MS.gene028529:CDS |
| TGTCAATGATTCGACTTTGG+AGG | 0.493678 | 4.1:-20509269 | MS.gene028529:CDS |
| CATTATCAGTGCTTCTCCGT+TGG | 0.494180 | 4.1:-20509212 | MS.gene028529:CDS |
| AGTATCACATCCAATGTTCC+AGG | 0.498225 | 4.1:+20509310 | None:intergenic |
| TGAATGGCATCCTGCTTCAC+CGG | 0.501096 | 4.1:-20509158 | MS.gene028529:CDS |
| GAAATCACATCAGTTCTTGT+TGG | 0.502174 | 4.1:-20508181 | MS.gene028529:CDS |
| GATTACGGGACTTCCTTTGG+AGG | 0.507961 | 4.1:-20509362 | MS.gene028529:CDS |
| AGTGCTTCTCCGTTGGCGAT+GGG | 0.519640 | 4.1:-20509205 | MS.gene028529:CDS |
| TAAGACAAGACCTTAAGTTC+CGG | 0.528236 | 4.1:+20509139 | None:intergenic |
| GACTTAAACTAAGCTCCGTC+GGG | 0.541712 | 4.1:-20510003 | MS.gene028529:CDS |
| ACTGATAATGCCAACACCCT+TGG | 0.547863 | 4.1:+20509225 | None:intergenic |
| GTTCTTGATAGGGTTCCGCC+TGG | 0.552103 | 4.1:-20509328 | MS.gene028529:CDS |
| GGACTTAAACTAAGCTCCGT+CGG | 0.552405 | 4.1:-20510004 | MS.gene028529:CDS |
| CAAACTCTCGTCTACACTTG+TGG | 0.552478 | 4.1:+20509651 | None:intergenic |
| CAACTCTGCTGGATTCCGCT+AGG | 0.566406 | 4.1:+20506937 | None:intergenic |
| TATCTGAAGTCCAAGGGTGT+TGG | 0.578204 | 4.1:-20509235 | MS.gene028529:CDS |
| ACACCCTTGGACTTCAGATA+GGG | 0.582023 | 4.1:+20509238 | None:intergenic |
| TACATTGTAGCAACTAAGTG+TGG | 0.594346 | 4.1:-20509715 | MS.gene028529:CDS |
| TCCAGAAACTGAAGGAAGCA+GGG | 0.594834 | 4.1:-20509402 | MS.gene028529:CDS |
| GTCTGAGAAAGTGCTCGGAA+AGG | 0.603040 | 4.1:-20509770 | MS.gene028529:CDS |
| AGTGCCCTATCTGAAGTCCA+AGG | 0.603565 | 4.1:-20509242 | MS.gene028529:CDS |
| GAAGCAGGATGCCATTCAGG+AGG | 0.605422 | 4.1:+20509163 | None:intergenic |
| ACATAAGTAAATACCTCCAA+AGG | 0.605576 | 4.1:+20509349 | None:intergenic |
| AGTGTCGAAGAAGTTGATGC+CGG | 0.606690 | 4.1:+20509898 | None:intergenic |
| AGGAGAAGCTCCGAACCCGA+CGG | 0.607761 | 4.1:+20509988 | None:intergenic |
| ACACTGTCTGAGAAAGTGCT+CGG | 0.611937 | 4.1:-20509775 | MS.gene028529:CDS |
| GTGCCCTATCTGAAGTCCAA+GGG | 0.616458 | 4.1:-20509241 | MS.gene028529:CDS |
| TTGTAGCAACTAAGTGTGGA+AGG | 0.618298 | 4.1:-20509711 | MS.gene028529:CDS |
| TCGAATCATTGACAGAGTGA+TGG | 0.619506 | 4.1:+20509278 | None:intergenic |
| GTGAGAAGACCCATCGCCAA+CGG | 0.621669 | 4.1:+20509196 | None:intergenic |
| GAAATTTGAAGATATTATGG+AGG | 0.631142 | 4.1:-20509799 | MS.gene028529:intron |
| TCCTGCACTCCAGAAACTGA+AGG | 0.632500 | 4.1:-20509410 | MS.gene028529:CDS |
| GAAGCGGCTCTGTCAGAAGT+CGG | 0.634736 | 4.1:-20506994 | MS.gene028529:CDS |
| AGAAGCTGCAAGTTCTCTTG+CGG | 0.638741 | 4.1:+20507026 | None:intergenic |
| AAGTGTGGAAGGTACAAAGA+GGG | 0.661768 | 4.1:-20509700 | MS.gene028529:CDS |
| TAAGTGTGGAAGGTACAAAG+AGG | 0.663345 | 4.1:-20509701 | MS.gene028529:CDS |
| AAGCAGGATGCCATTCAGGA+GGG | 0.673956 | 4.1:+20509164 | None:intergenic |
| GTGTAGACGAGAGTTTGGAA+AGG | 0.684238 | 4.1:-20509645 | MS.gene028529:CDS |
| AGCTTCTGGAATCGACGAAG+CGG | 0.691488 | 4.1:-20507010 | MS.gene028529:CDS |
| GGCGATGGGTCTTCTCACTG+AGG | 0.694882 | 4.1:-20509191 | MS.gene028529:CDS |
| TTGAAAAGCGATACGAACAG+AGG | 0.699253 | 4.1:+20509922 | None:intergenic |
| GAACCGAAGACGTTTCCGAG+AGG | 0.720849 | 4.1:+20509968 | None:intergenic |
| ATCACATCCAATGTTCCAGG+CGG | 0.724421 | 4.1:+20509313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAATATAAAGTTTTAATT+TGG | - | chr4.1:20508416-20508435 | MS.gene028529:intron | 10.0% |
| !!! | TTATATTTTTCTTATACAAA+AGG | - | chr4.1:20508145-20508164 | MS.gene028529:intron | 10.0% |
| !! | ACATATATTATCAATTATAG+TGG | + | chr4.1:20509752-20509771 | None:intergenic | 15.0% |
| !!! | TAATTTGCTACTAAATTTAT+CGG | - | chr4.1:20508107-20508126 | MS.gene028529:intron | 15.0% |
| !!! | TATATTTTCTCAATTTAGAA+CGG | + | chr4.1:20509901-20509920 | None:intergenic | 15.0% |
| !!! | TCTTGTCTTATTATTAATTA+CGG | - | chr4.1:20507841-20507860 | MS.gene028529:intron | 15.0% |
| !!! | TTGATAATATATGTCAATAT+TGG | - | chr4.1:20509758-20509777 | MS.gene028529:CDS | 15.0% |
| !! | ATTCGTTCAATATATCATAT+GGG | + | chr4.1:20508504-20508523 | None:intergenic | 20.0% |
| !! | ATTTACTTATGTTCTTGATA+GGG | - | chr4.1:20507629-20507648 | MS.gene028529:intron | 20.0% |
| !! | CAATACATGTTACTAAATTA+TGG | + | chr4.1:20509388-20509407 | None:intergenic | 20.0% |
| !! | TATTTACTTATGTTCTTGAT+AGG | - | chr4.1:20507628-20507647 | MS.gene028529:intron | 20.0% |
| !! | TTTGTATATGTAAATCAGAA+AGG | - | chr4.1:20508258-20508277 | MS.gene028529:CDS | 20.0% |
| !!! | AATTTGCTACTAAATTTATC+GGG | - | chr4.1:20508108-20508127 | MS.gene028529:intron | 20.0% |
| !!! | GTTCTAAATTGAGAAAATAT+AGG | - | chr4.1:20509900-20509919 | MS.gene028529:CDS | 20.0% |
| !!! | TTAAGTTTTTTTATCCAAAG+AGG | - | chr4.1:20507448-20507467 | MS.gene028529:intron | 20.0% |
| ! | AAATATGTACTTGTTTAGCT+TGG | - | chr4.1:20509109-20509128 | MS.gene028529:intron | 25.0% |
| ! | AAATGTCAATCTCTTAACAA+AGG | + | chr4.1:20509425-20509444 | None:intergenic | 25.0% |
| ! | AACAAGTACATAATTTACAG+AGG | + | chr4.1:20509015-20509034 | None:intergenic | 25.0% |
| ! | AATGCAATATTTAAGCAAGT+GGG | - | chr4.1:20509280-20509299 | MS.gene028529:CDS | 25.0% |
| ! | AATTATGTACTTGTTTAGCT+TGG | - | chr4.1:20509020-20509039 | MS.gene028529:intron | 25.0% |
| ! | AATTTCAGTTGTAACTTAAC+TGG | - | chr4.1:20507475-20507494 | MS.gene028529:intron | 25.0% |
| ! | CATATTTCATCAAAACTAAC+TGG | - | chr4.1:20508648-20508667 | MS.gene028529:intron | 25.0% |
| ! | CATTCGTTCAATATATCATA+TGG | + | chr4.1:20508505-20508524 | None:intergenic | 25.0% |
| ! | CTAAATTGAGAAAATATAGG+TGG | - | chr4.1:20509903-20509922 | MS.gene028529:CDS | 25.0% |
| ! | CTCGAAATTTGAAGATATTA+TGG | - | chr4.1:20507165-20507184 | MS.gene028529:intron | 25.0% |
| ! | GAAATTTGAAGATATTATGG+AGG | - | chr4.1:20507168-20507187 | MS.gene028529:intron | 25.0% |
| ! | TACACTATAATAAGCAAACA+TGG | - | chr4.1:20509575-20509594 | MS.gene028529:intron | 25.0% |
| ! | TGATCATAACATGCAAATTA+AGG | + | chr4.1:20507950-20507969 | None:intergenic | 25.0% |
| ! | TTCGTTCAATATATCATATG+GGG | + | chr4.1:20508503-20508522 | None:intergenic | 25.0% |
| !! | AACAAGTACATATTTTACAG+AGG | + | chr4.1:20509104-20509123 | None:intergenic | 25.0% |
| !! | GTTTATGTTGTTGTTGTAAA+AGG | - | chr4.1:20508195-20508214 | MS.gene028529:CDS | 25.0% |
| !! | TTTTTGTGCAAAAGATGATT+TGG | + | chr4.1:20508076-20508095 | None:intergenic | 25.0% |
| AACTCCACAAATTATGTGAT+AGG | + | chr4.1:20509332-20509351 | None:intergenic | 30.0% | |
| AACTGAAATTAGATCCTCTT+TGG | + | chr4.1:20507465-20507484 | None:intergenic | 30.0% | |
| AACTGGTAACTGTATTTCAA+GGG | - | chr4.1:20507492-20507511 | MS.gene028529:intron | 30.0% | |
| AATGAAAACAACAAAGAGAG+AGG | + | chr4.1:20508972-20508991 | None:intergenic | 30.0% | |
| AATTGAGAAAATATAGGTGG+AGG | - | chr4.1:20509906-20509925 | MS.gene028529:CDS | 30.0% | |
| ACATAAGTAAATACCTCCAA+AGG | + | chr4.1:20507621-20507640 | None:intergenic | 30.0% | |
| AGAACCTATCACATAATTTG+TGG | - | chr4.1:20509325-20509344 | MS.gene028529:CDS | 30.0% | |
| AGAACTAAGTTCTTATACAC+CGG | + | chr4.1:20508230-20508249 | None:intergenic | 30.0% | |
| AGAACTACTTGCAAATCATT+TGG | + | chr4.1:20509530-20509549 | None:intergenic | 30.0% | |
| ATACAAAAGGATAACGTTAG+TGG | - | chr4.1:20508158-20508177 | MS.gene028529:intron | 30.0% | |
| ATCACTGCATTCAATATTCT+TGG | - | chr4.1:20508525-20508544 | MS.gene028529:intron | 30.0% | |
| ATGTCAATATTGGAGTTCTT+GGG | - | chr4.1:20509768-20509787 | MS.gene028529:CDS | 30.0% | |
| CAATGCAATATTTAAGCAAG+TGG | - | chr4.1:20509279-20509298 | MS.gene028529:CDS | 30.0% | |
| CACTTGCTTAAATATTGCAT+TGG | + | chr4.1:20509281-20509300 | None:intergenic | 30.0% | |
| CAGTGTCATGATATTGAATT+TGG | - | chr4.1:20507372-20507391 | MS.gene028529:intron | 30.0% | |
| GAAATACAGAAAATTGAGCA+TGG | - | chr4.1:20508298-20508317 | MS.gene028529:intron | 30.0% | |
| GAACTACTTGCAAATCATTT+GGG | + | chr4.1:20509529-20509548 | None:intergenic | 30.0% | |
| GCAACTTATTGCAAAGAAAA+TGG | - | chr4.1:20508717-20508736 | MS.gene028529:intron | 30.0% | |
| TAACTGGTAACTGTATTTCA+AGG | - | chr4.1:20507491-20507510 | MS.gene028529:intron | 30.0% | |
| TACAAAAGGATAACGTTAGT+GGG | - | chr4.1:20508159-20508178 | MS.gene028529:intron | 30.0% | |
| TATGTCAATATTGGAGTTCT+TGG | - | chr4.1:20509767-20509786 | MS.gene028529:CDS | 30.0% | |
| TCGTTCAATATATCATATGG+GGG | + | chr4.1:20508502-20508521 | None:intergenic | 30.0% | |
| TGAAATGAAAAAAGAGAGAG+AGG | + | chr4.1:20507111-20507130 | None:intergenic | 30.0% | |
| TTGTAAAAGGATAACGTTTC+CGG | - | chr4.1:20508208-20508227 | MS.gene028529:CDS | 30.0% | |
| ! | AAAACTAGCTTACAACACTA+AGG | + | chr4.1:20507975-20507994 | None:intergenic | 30.0% |
| ! | AATCACAGATTTTCAGAACA+TGG | + | chr4.1:20508879-20508898 | None:intergenic | 30.0% |
| ! | CTCAATTTTCTGTATTTCTC+TGG | + | chr4.1:20508296-20508315 | None:intergenic | 30.0% |
| !! | TGTTCTGAAAATCTGTGATT+TGG | - | chr4.1:20508879-20508898 | MS.gene028529:intron | 30.0% |
| !!! | ATTTTTGACAGGCTTTAGAA+TGG | + | chr4.1:20510001-20510020 | None:intergenic | 30.0% |
| !!! | CTGGTTCTATGTATTTTGTT+TGG | - | chr4.1:20508667-20508686 | MS.gene028529:intron | 30.0% |
| AAACATCATTCAGTACTAGG+AGG | + | chr4.1:20508566-20508585 | None:intergenic | 35.0% | |
| ACTGGTAACTGTATTTCAAG+GGG | - | chr4.1:20507493-20507512 | MS.gene028529:intron | 35.0% | |
| AGATTGACATTTGCATGCAT+TGG | - | chr4.1:20509433-20509452 | MS.gene028529:intron | 35.0% | |
| CACAAACATCATTCAGTACT+AGG | + | chr4.1:20508569-20508588 | None:intergenic | 35.0% | |
| CTACCAAGTGAACTCAAATT+AGG | + | chr4.1:20507910-20507929 | None:intergenic | 35.0% | |
| CTTAACAAAGGACCTTCAAA+CGG | + | chr4.1:20509413-20509432 | None:intergenic | 35.0% | |
| GAAATCACATCAGTTCTTGT+TGG | - | chr4.1:20508786-20508805 | MS.gene028529:intron | 35.0% | |
| GCTACAATGTATTCACTTCT+CGG | + | chr4.1:20507243-20507262 | None:intergenic | 35.0% | |
| GTTCATCTTTATCAAGTGAC+TGG | + | chr4.1:20509879-20509898 | None:intergenic | 35.0% | |
| TAAGACAAGACCTTAAGTTC+CGG | + | chr4.1:20507831-20507850 | None:intergenic | 35.0% | |
| TACATTGTAGCAACTAAGTG+TGG | - | chr4.1:20507252-20507271 | MS.gene028529:intron | 35.0% | |
| TGAATTTGGATCGTTAGATC+AGG | - | chr4.1:20507386-20507405 | MS.gene028529:intron | 35.0% | |
| ! | ACATGTATTGATCCGTTTGA+AGG | - | chr4.1:20509398-20509417 | MS.gene028529:CDS | 35.0% |
| ! | ACCAACAGGAGTATGAAAAA+TGG | - | chr4.1:20509629-20509648 | MS.gene028529:CDS | 35.0% |
| ! | AGACCTAATTTGAGTTCACT+TGG | - | chr4.1:20507904-20507923 | MS.gene028529:intron | 35.0% |
| ! | CTAGTACTGAATGATGTTTG+TGG | - | chr4.1:20508567-20508586 | MS.gene028529:intron | 35.0% |
| ! | GAATCACTGTTTTCTGCTTA+TGG | - | chr4.1:20508613-20508632 | MS.gene028529:intron | 35.0% |
| ! | GTTTGCTTGTTCTTCTGAAA+CGG | + | chr4.1:20507024-20507043 | None:intergenic | 35.0% |
| ! | TTTTGTGCCGTAAAACAAGT+GGG | - | chr4.1:20509350-20509369 | MS.gene028529:CDS | 35.0% |
| !! | GCAGTACAGCTTGTTAAATA+AGG | - | chr4.1:20508764-20508783 | MS.gene028529:intron | 35.0% |
| !! | TCCATTTTTCATACTCCTGT+TGG | + | chr4.1:20509633-20509652 | None:intergenic | 35.0% |
| !!! | ATGATAGCCCACTTGTTTTA+CGG | + | chr4.1:20509360-20509379 | None:intergenic | 35.0% |
| AAAAATCAGTCATGGCCTAG+CGG | - | chr4.1:20510015-20510034 | MS.gene028529:CDS | 40.0% | |
| AAGGATAACGTTAGTGGGAT+AGG | - | chr4.1:20508164-20508183 | MS.gene028529:CDS | 40.0% | |
| ACTCGTTTCATTGGGATTAC+GGG | - | chr4.1:20507591-20507610 | MS.gene028529:intron | 40.0% | |
| AGAGAGAGGTAACAATCTGA+TGG | + | chr4.1:20508958-20508977 | None:intergenic | 40.0% | |
| AGCCTGTCAAAAATCAGTCA+TGG | - | chr4.1:20510007-20510026 | MS.gene028529:CDS | 40.0% | |
| AGGATAACGTTAGTGGGATA+GGG | - | chr4.1:20508165-20508184 | MS.gene028529:CDS | 40.0% | |
| AGTATCACATCCAATGTTCC+AGG | + | chr4.1:20507660-20507679 | None:intergenic | 40.0% | |
| ATGTGATAGGTTCTTCGTCT+AGG | + | chr4.1:20509319-20509338 | None:intergenic | 40.0% | |
| ATTGACAGAGTGATGGCAAT+AGG | + | chr4.1:20507685-20507704 | None:intergenic | 40.0% | |
| CTCTGTCAATGATTCGACTT+TGG | - | chr4.1:20507695-20507714 | MS.gene028529:intron | 40.0% | |
| CTTTGGTATCACTGTATAGC+TGG | - | chr4.1:20508931-20508950 | MS.gene028529:intron | 40.0% | |
| GACTCGTTTCATTGGGATTA+CGG | - | chr4.1:20507590-20507609 | MS.gene028529:intron | 40.0% | |
| TATGGGGGAAATCAGTAGTT+TGG | + | chr4.1:20508487-20508506 | None:intergenic | 40.0% | |
| TCGAATCATTGACAGAGTGA+TGG | + | chr4.1:20507692-20507711 | None:intergenic | 40.0% | |
| TGTCAATGATTCGACTTTGG+AGG | - | chr4.1:20507698-20507717 | MS.gene028529:intron | 40.0% | |
| TTACGTGAACTTGGAAGAAC+TGG | - | chr4.1:20506942-20506961 | MS.gene028529:CDS | 40.0% | |
| TTGAAAAGCGATACGAACAG+AGG | + | chr4.1:20507048-20507067 | None:intergenic | 40.0% | |
| TTGTAGCAACTAAGTGTGGA+AGG | - | chr4.1:20507256-20507275 | MS.gene028529:intron | 40.0% | |
| ! | AAGTGTGGAAGGTACAAAGA+GGG | - | chr4.1:20507267-20507286 | MS.gene028529:intron | 40.0% |
| ! | ACTGTTTTCTGCTTATGGTC+TGG | - | chr4.1:20508618-20508637 | MS.gene028529:intron | 40.0% |
| ! | GAGAGAGAGGAATTTGCTTA+CGG | + | chr4.1:20507098-20507117 | None:intergenic | 40.0% |
| ! | GTTTTGTGCCGTAAAACAAG+TGG | - | chr4.1:20509349-20509368 | MS.gene028529:CDS | 40.0% |
| ! | TAAGTGTGGAAGGTACAAAG+AGG | - | chr4.1:20507266-20507285 | MS.gene028529:intron | 40.0% |
| !! | GATACCAAAGCTTTAGAGCA+AGG | + | chr4.1:20508921-20508940 | None:intergenic | 40.0% |
| !! | GTTCGTATCGCTTTTCAATC+CGG | - | chr4.1:20507050-20507069 | MS.gene028529:intron | 40.0% |
| !! | TAAGCCTTGCTCTAAAGCTT+TGG | - | chr4.1:20508914-20508933 | MS.gene028529:intron | 40.0% |
| !! | TGCAAAAGATGATTTGGTGC+AGG | + | chr4.1:20508070-20508089 | None:intergenic | 40.0% |
| AACACCCTTGGACTTCAGAT+AGG | + | chr4.1:20507733-20507752 | None:intergenic | 45.0% | |
| ACACCCTTGGACTTCAGATA+GGG | + | chr4.1:20507732-20507751 | None:intergenic | 45.0% | |
| AGAAGCTGCAAGTTCTCTTG+CGG | + | chr4.1:20509944-20509963 | None:intergenic | 45.0% | |
| ATCACATCCAATGTTCCAGG+CGG | + | chr4.1:20507657-20507676 | None:intergenic | 45.0% | |
| CAAACTCTCGTCTACACTTG+TGG | + | chr4.1:20507319-20507338 | None:intergenic | 45.0% | |
| CACAAGTGTAGACGAGAGTT+TGG | - | chr4.1:20507317-20507336 | MS.gene028529:intron | 45.0% | |
| CAGGGAAGACTCGTTTCATT+GGG | - | chr4.1:20507583-20507602 | MS.gene028529:intron | 45.0% | |
| CATTATCAGTGCTTCTCCGT+TGG | - | chr4.1:20507755-20507774 | MS.gene028529:intron | 45.0% | |
| GACTTAAACTAAGCTCCGTC+GGG | - | chr4.1:20506964-20506983 | MS.gene028529:CDS | 45.0% | |
| GGACTTAAACTAAGCTCCGT+CGG | - | chr4.1:20506963-20506982 | MS.gene028529:CDS | 45.0% | |
| GTGTAGACGAGAGTTTGGAA+AGG | - | chr4.1:20507322-20507341 | MS.gene028529:intron | 45.0% | |
| TCCAGAAACTGAAGGAAGCA+GGG | - | chr4.1:20507565-20507584 | MS.gene028529:intron | 45.0% | |
| TCCTCATACTCTCTACCAAC+AGG | - | chr4.1:20509615-20509634 | MS.gene028529:CDS | 45.0% | |
| ! | ACTGATAATGCCAACACCCT+TGG | + | chr4.1:20507745-20507764 | None:intergenic | 45.0% |
| ! | GTTGGTAGAGAGTATGAGGA+AGG | + | chr4.1:20509615-20509634 | None:intergenic | 45.0% |
| ! | TATCTGAAGTCCAAGGGTGT+TGG | - | chr4.1:20507732-20507751 | MS.gene028529:intron | 45.0% |
| ! | TCCTGTTGGTAGAGAGTATG+AGG | + | chr4.1:20509619-20509638 | None:intergenic | 45.0% |
| !! | ACACTGTCTGAGAAAGTGCT+CGG | - | chr4.1:20507192-20507211 | MS.gene028529:intron | 45.0% |
| !! | AGTGTCGAAGAAGTTGATGC+CGG | + | chr4.1:20507072-20507091 | None:intergenic | 45.0% |
| !! | GGCCATGACTGATTTTTGAC+AGG | + | chr4.1:20510012-20510031 | None:intergenic | 45.0% |
| !! | TAAGCAAGTGGGCTATCATC+AGG | - | chr4.1:20509291-20509310 | MS.gene028529:CDS | 45.0% |
| AAACTAAGCTCCGTCGGGTT+CGG | - | chr4.1:20506969-20506988 | MS.gene028529:CDS | 50.0% | |
| AAGCAGGATGCCATTCAGGA+GGG | + | chr4.1:20507806-20507825 | None:intergenic | 50.0% | |
| ACCTTAAGTTCCGGTGAAGC+AGG | + | chr4.1:20507822-20507841 | None:intergenic | 50.0% | |
| CTCCAGAAACTGAAGGAAGC+AGG | - | chr4.1:20507564-20507583 | MS.gene028529:intron | 50.0% | |
| GATTACGGGACTTCCTTTGG+AGG | - | chr4.1:20507605-20507624 | MS.gene028529:intron | 50.0% | |
| GCAAGAGAACTTGCAGCTTC+TGG | - | chr4.1:20509943-20509962 | MS.gene028529:CDS | 50.0% | |
| GCAGGGAAGACTCGTTTCAT+TGG | - | chr4.1:20507582-20507601 | MS.gene028529:intron | 50.0% | |
| TCCCTGCTTCCTTCAGTTTC+TGG | + | chr4.1:20507569-20507588 | None:intergenic | 50.0% | |
| TCCTGCACTCCAGAAACTGA+AGG | - | chr4.1:20507557-20507576 | MS.gene028529:intron | 50.0% | |
| TCCTGCTTCACCGGAACTTA+AGG | - | chr4.1:20507818-20507837 | MS.gene028529:intron | 50.0% | |
| TCTCCTCTCGGAAACGTCTT+CGG | - | chr4.1:20506996-20507015 | MS.gene028529:CDS | 50.0% | |
| TGAATGGCATCCTGCTTCAC+CGG | - | chr4.1:20507809-20507828 | MS.gene028529:intron | 50.0% | |
| TGGCATGAGATCTGTCGAAC+AGG | - | chr4.1:20508806-20508825 | MS.gene028529:intron | 50.0% | |
| TGGGATTACGGGACTTCCTT+TGG | - | chr4.1:20507602-20507621 | MS.gene028529:intron | 50.0% | |
| TTGGAGTTCTTGGGTGCACT+AGG | - | chr4.1:20509777-20509796 | MS.gene028529:CDS | 50.0% | |
| ! | AGTGCCCTATCTGAAGTCCA+AGG | - | chr4.1:20507725-20507744 | MS.gene028529:intron | 50.0% |
| ! | GTGCCCTATCTGAAGTCCAA+GGG | - | chr4.1:20507726-20507745 | MS.gene028529:intron | 50.0% |
| !! | AGCTTCTGGAATCGACGAAG+CGG | - | chr4.1:20509957-20509976 | MS.gene028529:CDS | 50.0% |
| !! | GTCTGAGAAAGTGCTCGGAA+AGG | - | chr4.1:20507197-20507216 | MS.gene028529:intron | 50.0% |
| !! | TCCTTCAGTTTCTGGAGTGC+AGG | + | chr4.1:20507561-20507580 | None:intergenic | 50.0% |
| AGTGCTTCTCCGTTGGCGAT+GGG | - | chr4.1:20507762-20507781 | MS.gene028529:intron | 55.0% | |
| ATGGGTCTTCTCACTGAGGC+TGG | - | chr4.1:20507780-20507799 | MS.gene028529:intron | 55.0% | |
| CAACTCTGCTGGATTCCGCT+AGG | + | chr4.1:20510033-20510052 | None:intergenic | 55.0% | |
| GAACCGAAGACGTTTCCGAG+AGG | + | chr4.1:20507002-20507021 | None:intergenic | 55.0% | |
| GAAGCAGGATGCCATTCAGG+AGG | + | chr4.1:20507807-20507826 | None:intergenic | 55.0% | |
| GAAGCGGCTCTGTCAGAAGT+CGG | - | chr4.1:20509973-20509992 | MS.gene028529:CDS | 55.0% | |
| GGTGAAGCAGGATGCCATTC+AGG | + | chr4.1:20507810-20507829 | None:intergenic | 55.0% | |
| GTGAGAAGACCCATCGCCAA+CGG | + | chr4.1:20507774-20507793 | None:intergenic | 55.0% | |
| GTTCTTGATAGGGTTCCGCC+TGG | - | chr4.1:20507639-20507658 | MS.gene028529:intron | 55.0% | |
| TAGGGTTCCGCCTGGAACAT+TGG | - | chr4.1:20507647-20507666 | MS.gene028529:intron | 55.0% | |
| AGGAGAAGCTCCGAACCCGA+CGG | + | chr4.1:20506982-20507001 | None:intergenic | 60.0% | |
| CAGTGCTTCTCCGTTGGCGA+TGG | - | chr4.1:20507761-20507780 | MS.gene028529:intron | 60.0% | |
| GGCGATGGGTCTTCTCACTG+AGG | - | chr4.1:20507776-20507795 | MS.gene028529:intron | 60.0% | |
| GGGTTCGGAGCTTCTCCTCT+CGG | - | chr4.1:20506984-20507003 | MS.gene028529:CDS | 60.0% | |
| ! | CTGAGGCTGGCCCTCCTGAA+TGG | - | chr4.1:20507793-20507812 | MS.gene028529:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 20506936 | 20510053 | 20506936 | ID=MS.gene028529 |
| chr4.1 | mRNA | 20506936 | 20510053 | 20506936 | ID=MS.gene028529.t1;Parent=MS.gene028529 |
| chr4.1 | exon | 20509893 | 20510053 | 20509893 | ID=MS.gene028529.t1.exon1;Parent=MS.gene028529.t1 |
| chr4.1 | CDS | 20509893 | 20510053 | 20509893 | ID=cds.MS.gene028529.t1;Parent=MS.gene028529.t1 |
| chr4.1 | exon | 20509582 | 20509810 | 20509582 | ID=MS.gene028529.t1.exon2;Parent=MS.gene028529.t1 |
| chr4.1 | CDS | 20509582 | 20509810 | 20509582 | ID=cds.MS.gene028529.t1;Parent=MS.gene028529.t1 |
| chr4.1 | exon | 20509150 | 20509449 | 20509150 | ID=MS.gene028529.t1.exon3;Parent=MS.gene028529.t1 |
| chr4.1 | CDS | 20509150 | 20509449 | 20509150 | ID=cds.MS.gene028529.t1;Parent=MS.gene028529.t1 |
| chr4.1 | exon | 20508162 | 20508290 | 20508162 | ID=MS.gene028529.t1.exon4;Parent=MS.gene028529.t1 |
| chr4.1 | CDS | 20508162 | 20508290 | 20508162 | ID=cds.MS.gene028529.t1;Parent=MS.gene028529.t1 |
| chr4.1 | exon | 20506936 | 20507067 | 20506936 | ID=MS.gene028529.t1.exon5;Parent=MS.gene028529.t1 |
| chr4.1 | CDS | 20506936 | 20507067 | 20506936 | ID=cds.MS.gene028529.t1;Parent=MS.gene028529.t1 |
| Gene Sequence |
| Protein sequence |
