AlfalfaGEDB | MS.gene96904

M. sativa cultivar XinJiangDaYe / MS.gene96904

KEGG: -
GO: -
PFAM: PF00248.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96904.t1	XP_013467217.1	99.7	328	1	0	1	328	1	328	1.30E-189	672.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96904.t1	O23016	83.5	328	54	0	1	328	1	328	1.4e-165	583.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96904.t1	I3S210	99.7	328	1	0	1	328	1	328	9.0e-190	672.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene015787	MS.gene96904	PPI
MS.gene022150	MS.gene96904	PPI
MS.gene022151	MS.gene96904	PPI
MS.gene022153	MS.gene96904	PPI
MS.gene028529	MS.gene96904	PPI
MS.gene049084	MS.gene96904	PPI
MS.gene053384	MS.gene96904	PPI
MS.gene053630	MS.gene96904	PPI
MS.gene057207	MS.gene96904	PPI
MS.gene05880	MS.gene96904	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96904.t1	MTR_1g047250	99.695	328	1	0	1	328	1	328	0.0	679
MS.gene96904.t1	MTR_7g114990	30.915	317	200	9	5	317	17	318	7.08e-32	122
MS.gene96904.t1	MTR_7g114980	30.721	319	172	12	6	301	16	308	5.32e-28	112
MS.gene96904.t1	MTR_7g115010	29.904	311	168	12	5	301	13	287	2.15e-27	109
MS.gene96904.t1	MTR_1g102750	28.662	314	182	10	6	301	10	299	2.33e-27	110
MS.gene96904.t1	MTR_7g114970	30.164	305	189	9	6	301	12	301	4.86e-27	108
MS.gene96904.t1	MTR_7g114970	34.043	235	139	7	5	233	11	235	1.65e-26	106
MS.gene96904.t1	MTR_7g114970	34.043	235	139	7	5	233	11	235	1.73e-26	106
MS.gene96904.t1	MTR_7g114980	31.379	290	150	12	6	272	16	279	6.79e-26	105
MS.gene96904.t1	MTR_1g042730	27.147	361	208	11	1	318	61	409	1.28e-25	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96904.t1	AT1G04690	83.537	328	54	0	1	328	1	328	0.0	591
MS.gene96904.t1	AT1G60680	27.492	331	214	10	6	327	12	325	1.84e-25	104
MS.gene96904.t1	AT1G60690	28.701	331	209	11	6	327	12	324	3.60e-25	103
MS.gene96904.t1	AT1G60710	28.614	332	210	10	5	327	11	324	5.43e-25	103
MS.gene96904.t1	AT1G60750	28.963	328	196	11	6	327	13	309	7.56e-25	102
MS.gene96904.t1	AT1G04420	28.056	360	206	12	1	318	56	404	4.87e-24	102
MS.gene96904.t1	AT4G33670	26.284	331	202	12	1	318	4	305	2.20e-22	95.9
MS.gene96904.t1	AT1G60730	27.864	323	204	11	6	318	12	315	2.36e-21	93.6
MS.gene96904.t1	AT1G10810	27.707	314	184	11	6	301	12	300	7.76e-21	92.0
MS.gene96904.t1	AT1G60680	30.455	220	135	7	5	217	11	219	9.54e-20	87.0

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Find 91 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAAACGGCTGTCTGG+GGG	0.620635	1.4:+31812738	None:intergenic
AAAGCGTCGTTGAAGAGGCT+GGG	0.526852	1.4:-31816161	MS.gene96904:CDS
AAAGTCAGCCAACTCTCCTA+CGG	0.595921	1.4:-31816440	MS.gene96904:CDS
AACGCAGAAGTCTACGCCAA+CGG	0.656202	1.4:-31816326	MS.gene96904:CDS
AACTGACGAAACATTAGGAT+TGG	0.534487	1.4:+31812029	None:intergenic
AAGATCTTCTGGGGAGGACA+AGG	0.577927	1.4:-31816230	MS.gene96904:CDS
AAGATGCAATACAACAACTT+AGG	0.560476	1.4:-31816476	MS.gene96904:CDS
AAGCAATCAAAAGCCTTGAC+TGG	0.525793	1.4:-31816280	MS.gene96904:CDS
AAGCCAATAGCAGATGAACT+GGG	0.634352	1.4:-31812090	MS.gene96904:CDS
AAGCGTCGTTGAAGAGGCTG+GGG	0.588685	1.4:-31816160	MS.gene96904:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTTAGACCAAAGAATAA+AGG	-	chr1.4:31816063-31816082	MS.gene96904:CDS	30.0%
ACACACACACAAAAAATAAG+GGG	+	chr1.4:31816195-31816214	None:intergenic	30.0%
ACACACACACACAAAAAATA+AGG	+	chr1.4:31816197-31816216	None:intergenic	30.0%
AGGATTGAACCAATATATGT+AGG	-	chr1.4:31815905-31815924	MS.gene96904:intron	30.0%
ATAAGCATACAGTAACCAAT+TGG	+	chr1.4:31814072-31814091	None:intergenic	30.0%
ATCGGGTAATAACTGATATA+AGG	+	chr1.4:31816026-31816045	None:intergenic	30.0%
ATGAAGAGTTAGGTCAATTT+CGG	-	chr1.4:31814488-31814507	MS.gene96904:intron	30.0%
ATTCCATAACTAGAATACAG+GGG	+	chr1.4:31814202-31814221	None:intergenic	30.0%
CAAACTTGTGACTTTACTTA+AGG	+	chr1.4:31815954-31815973	None:intergenic	30.0%
CAATGTACGACTAAAATGTT+TGG	-	chr1.4:31812312-31812331	MS.gene96904:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	31810554	31816495	31810554	ID=MS.gene96904
chr1.4	mRNA	31810554	31816495	31810554	ID=MS.gene96904.t1;Parent=MS.gene96904
chr1.4	exon	31815932	31816495	31815932	ID=MS.gene96904.t1.exon1;Parent=MS.gene96904.t1
chr1.4	CDS	31815932	31816495	31815932	ID=cds.MS.gene96904.t1;Parent=MS.gene96904.t1
chr1.4	exon	31812725	31812868	31812725	ID=MS.gene96904.t1.exon2;Parent=MS.gene96904.t1
chr1.4	CDS	31812725	31812868	31812725	ID=cds.MS.gene96904.t1;Parent=MS.gene96904.t1
chr1.4	exon	31812002	31812166	31812002	ID=MS.gene96904.t1.exon3;Parent=MS.gene96904.t1
chr1.4	CDS	31812002	31812166	31812002	ID=cds.MS.gene96904.t1;Parent=MS.gene96904.t1
chr1.4	exon	31810554	31810667	31810554	ID=MS.gene96904.t1.exon4;Parent=MS.gene96904.t1
chr1.4	CDS	31810554	31810667	31810554	ID=cds.MS.gene96904.t1;Parent=MS.gene96904.t1

Gene Sequence

>MS.gene96904

ATGCAATACAACAACTTAGGCCGGTCAGGTCTAAAAGTCAGCCAACTCTCCTACGGAGCATGGGTAAGTTTCGGCAACCAACTGGACGTCAAAGAAGCAAAATCCCTTCTCCAATGCTGCCGCGACCACGGCGTAAACTTCTTCGACAACGCAGAAGTCTACGCCAACGGTCGCGCAGAGGAGATCATGGGACAAGCAATCAAAAGCCTTGACTGGAAACGGTCTGACATCGTTGTTTCGACGAAGATCTTCTGGGGAGGACAAGGACCGAATGATAAGGGGCTGTCAAGGAAGCATATTGTGGAAGGTACGAAAGCGTCGTTGAAGAGGCTGGGGATGGAGTATGTGGATGTTGTGTATTGTCATAGGCCGGATGTTTGTACGCCGATTGAGGAGACTGTAAGAGCAATGAATTTTGTTATTGATCAAGGTTGGGCTTTTTATTGGGGGACTAGTGAGTGGTCTAGTCAGCAGATTACTGAAGCTTGGGCTGTTGCTAATAGGTTGGATTTGGTTGGACCGGTTGTTGAACAGCCTGAGTATAATCTCTTGAACAGGCACAAGGTAAATTCAAATCCATTTTTGTTGAGATTTGTTGAATATATATGTTGAATTTGTTTATTATGACCATAATAATGTTGGATTTAGGACCCGTTTGGATTGGCTTGTTTCTGAGGTTATGTAAATAAATTTATTATTCATAAGTTTGTCAATACAGATAGTTGATGAAAAAAAAGCTTATGAAGATGCAGTTTTTGTTAGTGAGATTAGAACATAAGAATTAAAATAAAAGCTTATTTAGTTGGTTGACTTATTTGAGCTTATCTACTATGAAAATTACAAAAGCCACTTTTTCCCTTATGGATGATAAATTGGTACTTAGTTTTGCAGCGTCTTACATTGCAGGATGTCCTTCCTATTAACACTGCCAACCAACTTGAAACTATGATGCCCATATTTGATATGTTGTGTACTGTTGGTGTTAATTTTGTTTATATCATTGATTTGTGTTAGTGTAAAATTGAATCTGTGATGCTCAGATTCTCTGTACTGTTAGTGTTAATTTGATGGCGGCCACCTCAAACTTTTTTGTCTAGCTCTGCTCTGACACTGGTTTTCACAAGTTCTTTTGGGAATATTTTACTACTTTCTCCAATATATATATGGTTCTGTTTGGATAAGCTATTTTTACAACAAAAGAAATTTTTTATAGCATATACAAAAACAGTTTAACTCTATTTAACCTTTTTATATAAAAATAGCTTATGTAAGCTTATGCATAAACACTTATCATGATAAGTGCTTGTGCTATAAGCTGCATACAAGTTTATAAAAAACATAATTTAGTTTGCTTGTTTTTTGTTGATAAATTTAATCTTCTTGTTTTAGTTTAGTGGTTGGTATGTAATGTATTTTTTACTCCCTCCGGTCCTTAATATAAGAAGAAAAACCAAAAAACATCAAAACCAATGCAATTATTTATTAGTGTAACTTTTTGAATATTTTTACAAATATACCTTCATAAAATATTGTGAAGCATTAAATACACATACTAATATTAAAAACACAAACATTAAATAAAGGGTAGAAAAGTCTTTTAAACAGTAACTACTAGTTAAAACTTGTGATATTTTCTTATAATTTGGACCAATTTTTTTTTTGAAAATTTTCTTATATATATGACCAGAGGGAGTACTTTTTGTTGGAAATTGGGTATCCTCCACATGCAAGTCAACTACAGAGTCTAATCCCTCGAGTCAATGTACGACTAAAATGTTTGGCAAACTCCCCAACAATTTTAACGATGTTATATTGTATGTTCGAGTTTGAGACATGAGACTTTGGGTTCGAACTTGAGACTTTGATTCTATTGACATGTTTAGTGGTTAGTGTGCAATGTATATGACTATTGGTGTGCAATGTATAAGCGTGGAGATTAGATTTCGGCTAGAAGAGTTTAGTGGTTGGTGTGCTGTATATGACTATTGTAAACCTTTACGCTATTGATAAAAAAAAGTTTTCCAAATTTAAATTGCTGATGTATGTTTTAAAAAAAATTAAATTTAAAAAGGAACGATTGTTAAGGGTAAAATTGTATAGGAAAAAGTTCAATCAAAGTTGTTAGTTCTTTTGGTTACATCTTATATGTACGAAGTTTCCACCGCCGTTTAGTGTTGATTAATCTTTATCAGAGAACCTGTTGGGCACACATGGTGGGTTCTCCCCTTGTTGAGGGATGACTCAAAATTTGGTGTTTGGAAAATGTTGGAATCGTGACACAATTTTGGTATCGTGGCACGATTTTCAAGGCCGTGAATGGGTGTGTTCTGGAAGCCAAATCGTGACACGATTTGGGAAAACGTGACACGATTTGTGGATAAGATTTGTGTATTTTGGGTCGTACGCAAGGAATCGTGACACGATTTTGGCAACCGTGACACGATTTTGCCCGAATCTGAACACTATACAAGCATTTTTTGACCCATTTGTTGGGTAAGCTTGGTGAATCTCATGGAAACCAAAGGAGGGAACTTTTAGGGTTTTAGATACTAAAGGTTGAGGGTCTTTGGGTGAGGTTCAAAGCTTCAAGATGTGAATCTTGGAGAACCAAAAGAGGGGGTTCTTGGGAAAAGGGTTGGTGCCTTTTGGGGAAGATTCATGGGGTTGGGAAACACATGAATGGAGAGTCTTTTGTGAGCAACTTGGGTGAGTCTTGGGAAACCAAAAGAGAAGATTCTTAGTGAAATCAAAGGCTAAGGGTTGGTTCTCTTGGGGGTTAGATTCTAGAGTTGGGAAACAATTGTAAACACCTTTGGGAGAGAGAAAATTCATTAGTGTCTTGTTCATTGGTGAGATTGGGAAAATGGGTAGAAATTAGGGTTGTTCTTTGTGAGCTTGTTGAATCTAATTTCTTGTAACCCATTTGTATCTCTTTGTAAGAACTCATTGATAGTGGATTGGAGAGATCAATCTCTCCCCCAGAGTAGGTCAAGTTGGACCGAACTGGGTGAACATTTCTTGGTGTTGTTATCTTTTCTTTACTCTCTTTATCTTGTTTATTCTTTAGTTGGATTGTGGTTTTGCTATGCACTTGGTTTCTAGATTAGATCTAGATTGTTGTTATTGCTTGTTGGTTGCCATTGATACTTGCTCCACGAATCTAAATTTCATTGATGTGAAGTTTGGAATTGACCGAATTCACAACACCCCTCCCAACCGATATTTTTGCATACGCAAGCGTTAGAGAACTAACCCCTGATCACTTGCTTAAGGGATCCCTTACCGCTTGGATAAATCCATTGTTGGTGGTGCAAAGTGCTAGCTACTTTTTAGTTTCCACTATATGATGGTATGGATAATGTTGCGATATCTTATATTTTCCTTTTTGTTTTAACCCTCTGACTATGATGGAAAAGAAGCCGATAATTTGGAGTTCGGCTGGAGGCAAGTAAAGTTTGGCCAATGATTGTTTCAGCCAAAATTTATCCTTCACTAAATCTCATTATCCGGTTGAGCCAATTGGTTACTGTATGCTTATATGATATGATTGATATAAATGTATGCGTCATTTCATTTTAATTGGATATTTGTGTTGATTTGATTTGAGTGTGTAAATGTGTGTTGCAGGTTGAGTCTGAGTATCTTCCCCTGTATTCTAGTTATGGAATTGGTCTCACCACTTGGAGTCCACTTGCGTCTGGAGTCCTTACTGGAAAATACAAGAAAGGAGTTATTCCCCCAGACAGCCGTTTTGCTTTGGAAAATTACAAGGTAATAAAAAATTTAAGGCCTTTTTTAGTTTTCTTTTTAAATAAACTTCCGTGTCTTTCTTCACTGTTTCTTATGATGGCGTTTTGTAATTTAAAATGAATTGTGTCACCAAATTTAAATGTAGTTTATGAGAGCATGATAGAAGATGGAATGATTTGGGTTTATGAAGAGTTAGGTCAATTTCGGTCTTTTTTGACGACTAGAACAATGAATAAATTCAAAGAAATGAATAACATAGAAACTATTTTGGATCGTTAACTAGGATAGAGATCATAATATGTGAGGGGTACTAATTAGCGTTTATCGAGTTGGTGAACAATTTGAGTTTTGTTTTTTAGTATGAACAAATTCGAAGTGTTGAAGATGAATACATGAACTAATTTAGCCGAAAATTTACACATATCAGCACCGTAACTGTAATGATTGATTGCCTTCTAAATTGACATATAGGTTCTGGCACCATTGTTGTATGATGGATAGAAATGGAATTGTTTTGGCCTCTTTTGTTTAGATTACTGAGCAATTATTTCTATTCCCACTTTTCCTCGTGTGTTGTAGAATCTTGCATCTCGGTCACTGGTTGATGATGTGCTCAAAAAGGTTGATGGTCTGAAGCCAATAGCAGATGAACTGGGCGTGCCATTAGCACAGCTTTCAATTGCGTGGTGTGCTGCCAATCCTAATGTTTCGTCAGTTATCTGTGGCGCTACAAAAGAGTCTCAGGTTAGTTTTCACATTCTCAAGACATTTTTACAAGGACATCATTTGGGTATTGAAAGCACTCTTGTGTATCTATTTATTACATCATACATTCTTGATACATTATGCATTTAGCAAGAAATACTTGTGGCAGCTGGAGAATGTTAAGTTAATTATCTCTAGCATTGTCATGAGATAACTCCAACTTTCTGTTACATGTGGAAATGTTCTTTGTTTTCCTAATGGCATGAAAACTTTTCAAATAGAAGTGAATGAAACTAATAAATACTGAGAATTAGGGGACTTTTTGGTTTTTGTTTCGATTTTCTGGTTTCACTGTTTCTTGTATAAATCTTTGACAACAAGAAATAAATTAAAAACAAAGTGTCGTTTTCGTTATTAAAGGTAAGAACAAGAAATTAAAACAAAGAATGGAAACAAAAATTAGACTAGCTCTATATAAGGGTACTGACTGCTTGTTAGTAGCTGCGAGCAAGTTTTAAAGATGCAAATAGACTGTGAGGCAAAATACTGATATGTAGTCATTAAAAAAGTATAATCGAAACTGAAAGTACAGCCAATTATGGATGATGACCCATTTAAGGAATTTAACAAATATTGAACAGGTTGAAAAGTTGCAATAAAATAGAAGACAAAGGACATGCATTTGAGTACTAGAGAGAGGAAGGGTGTTAAACATAATTATTTCCATAGCTAGTAGTTCCTTCTGCCATCCTTATATCACATACTTTATGTTACCTTTCTTCTTTACCACATTCCTCCGTGGTTCTTGAGTTCCTGGGTTGAAAGTAACCTGTTAGGTCACTTGGTTCAGTCCTTCGAAGAAGCATTGTCAATAGCTCAACAGTCGTCCTATTGAAAGGATTGAACCAATATATGTAGGTTTAAGTGGCAAGTTTGATTTTTCCTTAAGTAAAGTCACAAGTTTGAAGTCAAGTTTTGTTAATAAAAAAATTAAACCCTGGGAGAGTTTTGCCCCCTTATATCAGTTATTACCCGATTCACCTCAGATTATGCCAAGGTTAGACCAAAGAATAAAGGAGAGAAAAATACTTAGATATACATGTCCATTTATATGGAACTTTTATCTTAATTTGTGAAATAATAACTTGCTTGCAAGAATGCACTTTACCATTATAATTTTTGCCCCCTTATTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAATTATGTTTTCCTATGCTTAAATCTAGGAGAACCTGAAAGCAATTGATGTCATTCTTAATTTGAGGCATAACTCTTTTTGCAAGAGTGGAACTTTTCATTCTAAATGATCTTATCTTTTCTGTTTTGCTTTGTTTAGATTCATGAGAATATGAAGGCTATTGAAGTCATTAAACTACTAACTCCTGCTGTGATGGAGAAGATTGAGGCTGTTGTTCAAAGCAAACCAAAGCGCGCTGATTCGTACAGATGA

Protein sequence

>MS.gene96904.t1

MQYNNLGRSGLKVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIKSLDWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLGMEYVDVVYCHRPDVCTPIEETVRAMNFVIDQGWAFYWGTSEWSSQQITEAWAVANRLDLVGPVVEQPEYNLLNRHKVESEYLPLYSSYGIGLTTWSPLASGVLTGKYKKGVIPPDSRFALENYKNLASRSLVDDVLKKVDGLKPIADELGVPLAQLSIAWCAANPNVSSVICGATKESQIHENMKAIEVIKLLTPAVMEKIEAVVQSKPKRADSYR